Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008749.1 Hibiscus syriacus cultivar Beakdansim tig00111840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 379273
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 2 of 3
Found at i:175884 original size:16 final size:16
Alignment explanation
Indices: 175863--175896 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
175853 AGTAATTTAT
175863 AAGTTACATAAATATC
1 AAGTTACATAAATATC
**
175879 AAGTTAGGTAAATATC
1 AAGTTACATAAATATC
175895 AA
1 AA
175897 ATCAATTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (16 bp):
AAGTTACATAAATATC
Found at i:182906 original size:13 final size:13
Alignment explanation
Indices: 182890--182923 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
182880 CATCTAAATC
182890 TTTCTTTCT-TTAT
1 TTTCTTT-TATTAT
182903 TTTCTTTTATTAT
1 TTTCTTTTATTAT
182916 TTTCTTTT
1 TTTCTTTT
182924 CCCAATGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTTATTAT
Found at i:186010 original size:6 final size:7
Alignment explanation
Indices: 185993--186023 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
185983 ATTTTTAACT
185993 TTTTTTA
1 TTTTTTA
186000 TTTTTTA
1 TTTTTTA
186007 TTTTTTA
1 TTTTTTA
*
186014 TTTTTCA
1 TTTTTTA
186021 TTT
1 TTT
186024 AATGTATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTA
Found at i:186684 original size:14 final size:14
Alignment explanation
Indices: 186665--186694 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
186655 TATTGATCTT
186665 AAGTTTTATTAAGA
1 AAGTTTTATTAAGA
*
186679 AAGTTTTATTGAGA
1 AAGTTTTATTAAGA
186693 AA
1 AA
186695 CTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (14 bp):
AAGTTTTATTAAGA
Found at i:187330 original size:33 final size:31
Alignment explanation
Indices: 187247--187350 Score: 84
Period size: 32 Copynumber: 3.2 Consensus size: 31
187237 GATGGTTTGA
* *
187247 TTTCGGTTCGGATTAATTTCTA-TTTAGGTTGC
1 TTTCGG-TCGGATTAAATTC-AGTTCAGGTTGC
**
187279 TTTCAGGTCGGATTAAATTTGGTTCAGGTTGC
1 TTTC-GGTCGGATTAAATTCAGTTCAGGTTGC
* * * *
187311 TTTCGGATTGGGTTAAAATTCAGTTCTGGTTGT
1 TTTCGG-TCGGATT-AAATTCAGTTCAGGTTGC
187344 TTTCGGT
1 TTTCGGT
187351 TCAAGTTAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
31 2 0.03
32 34 0.59
33 22 0.38
ACGTcount: A:0.16, C:0.12, G:0.26, T:0.46
Consensus pattern (31 bp):
TTTCGGTCGGATTAAATTCAGTTCAGGTTGC
Found at i:187397 original size:22 final size:22
Alignment explanation
Indices: 187356--187401 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
187346 TCGGTTCAAG
*
187356 TTAGTTTCGGTTCGTGTTAATT
1 TTAGTTTCGGTTCGTATTAATT
187378 TTAGTTTCGGTTC-TAATTAATT
1 TTAGTTTCGGTTCGT-ATTAATT
187400 TT
1 TT
187402 GGATCGGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.17, C:0.09, G:0.17, T:0.57
Consensus pattern (22 bp):
TTAGTTTCGGTTCGTATTAATT
Found at i:189651 original size:3 final size:3
Alignment explanation
Indices: 189645--189685 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
189635 TATGTACGAG
189645 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
189686 AAACATGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:191799 original size:60 final size:59
Alignment explanation
Indices: 191700--191847 Score: 147
Period size: 60 Copynumber: 2.5 Consensus size: 59
191690 TTTCTTTATC
* * * *
191700 GAGTCTCTTGACTATTAAAAGTTATGAAACATCCCTTTGACTATATGGCATTATTTT-GT
1 GAGTCTATTGACTATTAAAAGTTAT-AAACATCCCTTTGACTATAAGACATTATTTTCCT
* * * * *
191759 AGAGTCTGTTGACTATTAAAAGTTATAATACGGT-CTTTTGATTATAAGATATTATTTTCCT
1 -GAGTCTATTGACTATTAAAAGTTATAA-AC-ATCCCTTTGACTATAAGACATTATTTTCCT
* *
191820 GAGTCCATTGACTAATAAAAGTTATAAA
1 GAGTCTATTGACTATTAAAAGTTATAAA
191848 ATAGTCATCA
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
59 3 0.04
60 69 0.93
61 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (59 bp):
GAGTCTATTGACTATTAAAAGTTATAAACATCCCTTTGACTATAAGACATTATTTTCCT
Found at i:192647 original size:32 final size:33
Alignment explanation
Indices: 192584--192650 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
192574 GGTGAAATTA
192584 TTTAGATATTCTATTTGAGTCTTTTTTTTTTAC
1 TTTAGATATTCTATTTGAGTCTTTTTTTTTTAC
192617 TTTAGATATTCTATTTGAGTC-TTTTTTTTTAC
1 TTTAGATATTCTATTTGAGTCTTTTTTTTTTAC
192649 TT
1 TT
192651 ATAAAAGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.64
Consensus pattern (33 bp):
TTTAGATATTCTATTTGAGTCTTTTTTTTTTAC
Found at i:194952 original size:18 final size:18
Alignment explanation
Indices: 194926--194960 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
194916 TCGAAAGGAC
*
194926 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
194944 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
194961 CCGGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:203702 original size:58 final size:58
Alignment explanation
Indices: 203601--203748 Score: 154
Period size: 58 Copynumber: 2.6 Consensus size: 58
203591 GGGGATCTAG
* * * * * * * *
203601 TCTCATATAAAATCAGGATGATGATATAATCTCATGCAGAATCAACACGATG-ATATTA
1 TCTCATGTAGAATCAGGACGAGGATATAATCCCATACAAAATCAACACG-TGAATATAA
* *
203659 TCTCATGTAGAATCAGGACGAGGATATAATCCCATATAAAATCAAGACGTGAATATAA
1 TCTCATGTAGAATCAGGACGAGGATATAATCCCATACAAAATCAACACGTGAATATAA
* * * *
203717 TCCCATGAAGAATCAGGACGGGGATAAAATCC
1 TCTCATGTAGAATCAGGACGAGGATATAATCC
203749 AGTGCAAAAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
57 2 0.03
58 73 0.97
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (58 bp):
TCTCATGTAGAATCAGGACGAGGATATAATCCCATACAAAATCAACACGTGAATATAA
Found at i:203747 original size:29 final size:29
Alignment explanation
Indices: 203611--203748 Score: 116
Period size: 29 Copynumber: 4.8 Consensus size: 29
203601 TCTCATATAA
* * * *
203611 AATCAGGATGATGATATAATCTCATGCAG
1 AATCAGGACGAGGATATAATCCCATGAAG
** * * * *
203640 AATCAACACGATGATATTATCTCATGTAG
1 AATCAGGACGAGGATATAATCCCATGAAG
*
203669 AATCAGGACGAGGATATAATCCCAT-ATAA
1 AATCAGGACGAGGATATAATCCCATGA-AG
* * *
203698 AATCAAGACGTGAATATAATCCCATGAAG
1 AATCAGGACGAGGATATAATCCCATGAAG
* *
203727 AATCAGGACGGGGATAAAATCC
1 AATCAGGACGAGGATATAATCC
203749 AGTGCAAAAT
Statistics
Matches: 87, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
29 86 0.99
30 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (29 bp):
AATCAGGACGAGGATATAATCCCATGAAG
Found at i:205562 original size:138 final size:137
Alignment explanation
Indices: 205295--205618 Score: 365
Period size: 138 Copynumber: 2.4 Consensus size: 137
205285 ATCCATTATG
* * * **
205295 TGTTAACATTGATTAGGTTTAAATATTAGAGCTTTCATTTTA-CATTAA-TTCACTTTAGTCCTT
1 TGTTAAAATTGATTAGGTTT-AATATTAGAGCCTTCATCTTAGGTTTAATTTCACTTTAGTCCTT
** * *
205358 TAATTTAAGAGAATTTTAATTTGTTCTTTGCTTTTCTGCCGAGGTTCCATATTAATTATTCAATC
65 TAATTTAAGAGAATTTTAATTTGTTCTTCACCTTTATGCCGAGGTTCCATATTAATTATTCAATC
*
205423 CAATAAAT
130 CAATAAAA
* *
205431 TGTTAAAATTGACTAGGTTTAACATTAGAGCCTTCATCTTAGGTTTAATTTCA-TTGTAGTCCTT
1 TGTTAAAATTGATTAGGTTTAATATTAGAGCCTTCATCTTAGGTTTAATTTCACTT-TAGTCCTT
* *
205495 TAGTTT-AGAAGAATTTTAATTTGGTTC-TCACCTTTATGCTCGAGGTTTCGA-ATTAATTATTC
65 TAATTTAAG-AGAATTTTAATTT-GTTCTTCACCTTTATGC-CGAGG-TTCCATATTAATTATTC
* *
205557 GATCCACTAAAA
126 AATCCAATAAAA
**
205569 TGTTAAAATTCG-TTAGGTTTTAATATTAGAGCCAACATCTTAGGTTTAAT
1 TGTTAAAATT-GATTAGG-TTTAATATTAGAGCCTTCATCTTAGGTTTAAT
205619 CCCTTAAGTT
Statistics
Matches: 159, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
135 18 0.11
136 26 0.16
137 38 0.24
138 43 0.27
139 34 0.21
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (137 bp):
TGTTAAAATTGATTAGGTTTAATATTAGAGCCTTCATCTTAGGTTTAATTTCACTTTAGTCCTTT
AATTTAAGAGAATTTTAATTTGTTCTTCACCTTTATGCCGAGGTTCCATATTAATTATTCAATCC
AATAAAA
Found at i:206650 original size:23 final size:22
Alignment explanation
Indices: 206606--206647 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
206596 AAGATAACAA
206606 CAAAAATTAATTTTACACAATT
1 CAAAAATTAATTTTACACAATT
*
206628 CAAAAA-TAAGTTTTTCACAA
1 CAAAAATTAA-TTTTACACAA
206648 ATTTTTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.33
Consensus pattern (22 bp):
CAAAAATTAATTTTACACAATT
Found at i:210806 original size:22 final size:23
Alignment explanation
Indices: 210773--210815 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
210763 AATGTTGAGA
210773 GGTTGATAACTTGAG-ACTTCAT
1 GGTTGATAACTTGAGTACTTCAT
*
210795 GGTTGA-ACACTTTAGTACTTC
1 GGTTGATA-ACTTGAGTACTTC
210816 TCATAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 1 0.06
22 12 0.67
23 5 0.28
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (23 bp):
GGTTGATAACTTGAGTACTTCAT
Found at i:211485 original size:39 final size:39
Alignment explanation
Indices: 211423--211500 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
211413 TAAATAGAGA
211423 GAGTTTTCTGAATTCTCATTCACCTTAAGCACAACATTT
1 GAGTTTTCTGAATTCTCATTCACCTTAAGCACAACATTT
211462 GAGTATTT-TGAATTCTCATTCACCTTAAGCACAACATTT
1 GAGT-TTTCTGAATTCTCATTCACCTTAAGCACAACATTT
211501 TCCTTTTACA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 35 0.92
40 3 0.08
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.38
Consensus pattern (39 bp):
GAGTTTTCTGAATTCTCATTCACCTTAAGCACAACATTT
Found at i:213712 original size:169 final size:172
Alignment explanation
Indices: 213503--213848 Score: 596
Period size: 169 Copynumber: 2.0 Consensus size: 172
213493 ATAATCTTAA
213503 TTGAGATGATAAAACTCTTTTCTTTTAAGTTCTGGGTTATCTGATAACAAGCAGGGGAAGGCATT
1 TTGAGATGATAAAACTCTTTTCTTTTAAGTTCTGGGTTATCTGATAACAAGCAGGGGAAGGCATT
*
213568 AGGTTAGTAAATCATATATTAAACTGAAGTACC-TAAT-AATTAAATTATA-CCATAAAAATTAT
66 AGGTTAGTAAATCATATATTAAACTG-AGTACCATAATAAATTAAACTATACCCATAAAAATTAT
213630 GGAAATGTTTTGCATCTAACTTGCAATACTTGAAATTGTGGGG-G
130 GGAAA--TTTTGCATCTAACTTGCAATACTTGAAATTGTGGGGTG
213674 TTGAGATGAT-AAACTC-TTTCTTTTAAGTTCTGGGTTATCTGATAACAAGCAGGGGAAGGCATT
1 TTGAGATGATAAAACTCTTTTCTTTTAAGTTCTGGGTTATCTGATAACAAGCAGGGGAAGGCATT
213737 AGGTTAGTAAATCATATATTAAACTGAGTACCTAATAATAAATTAAACTATACCCATAAAAATTA
66 AGGTTAGTAAATCATATATTAAACTGAGTACC--ATAATAAATTAAACTATACCCATAAAAATTA
213802 TGGAAATTTTGCATCTAACTTGCAATACTTGAAATTGTGGGGTG
129 TGGAAATTTTGCATCTAACTTGCAATACTTGAAATTGTGGGGTG
213846 TTG
1 TTG
213849 GAAAAAGTTG
Statistics
Matches: 168, Mismatches: 1, Indels: 11
0.93 0.01 0.06
Matches are distributed among these distances:
168 6 0.04
169 73 0.43
170 6 0.04
171 50 0.30
172 15 0.09
173 18 0.11
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (172 bp):
TTGAGATGATAAAACTCTTTTCTTTTAAGTTCTGGGTTATCTGATAACAAGCAGGGGAAGGCATT
AGGTTAGTAAATCATATATTAAACTGAGTACCATAATAAATTAAACTATACCCATAAAAATTATG
GAAATTTTGCATCTAACTTGCAATACTTGAAATTGTGGGGTG
Found at i:230108 original size:41 final size:41
Alignment explanation
Indices: 230051--230133 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
230041 AAGTGAACGG
230051 TAAAGATGATTGATGAGGTGGATGGATATGTGGAAAATCGA
1 TAAAGATGATTGATGAGGTGGATGGATATGTGGAAAATCGA
230092 TAAAGATGATTGATGAGGTGGATGGATATGTGGAAAATCGA
1 TAAAGATGATTGATGAGGTGGATGGATATGTGGAAAATCGA
230133 T
1 T
230134 GGATAATGTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.36, C:0.02, G:0.34, T:0.28
Consensus pattern (41 bp):
TAAAGATGATTGATGAGGTGGATGGATATGTGGAAAATCGA
Found at i:234575 original size:42 final size:42
Alignment explanation
Indices: 234522--234659 Score: 159
Period size: 42 Copynumber: 3.3 Consensus size: 42
234512 GGCGAAAATA
* * * *
234522 TTTTGTCACTAGTCTTTGTTGGTTATTTATGACGACAGTCAT
1 TTTTGTTACTAGTCTTAGTTGGTTATTTATGACGACAATTAT
* * *
234564 TTTTGTTACTAGTCTTAGTTGGTTATTTGTGACGGCAATTGT
1 TTTTGTTACTAGTCTTAGTTGGTTATTTATGACGACAATTAT
* * * * *
234606 TTTTTTTCACTAATCTTAGTTGGTGATTTATAACGAAAATTAT
1 TTTTGTT-ACTAGTCTTAGTTGGTTATTTATGACGACAATTAT
234649 TTTTGTTACTA
1 TTTTGTTACTA
234660 TTAAAGTGAA
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 45 0.57
43 34 0.43
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (42 bp):
TTTTGTTACTAGTCTTAGTTGGTTATTTATGACGACAATTAT
Found at i:234624 original size:43 final size:43
Alignment explanation
Indices: 234522--234652 Score: 138
Period size: 43 Copynumber: 3.1 Consensus size: 43
234512 GGCGAAAATA
* * *
234522 TTTTGTCACTAGTCTTTGTTGGTTATTTATGACGACAGTCATT
1 TTTTTTCACTAGTCTTAGTTGGTTATTTATGACGACAATCATT
* * * **
234565 TTTGTT-ACTAGTCTTAGTTGGTTATTTGTGACGGCAATTGTT
1 TTTTTTCACTAGTCTTAGTTGGTTATTTATGACGACAATCATT
* * * * *
234607 TTTTTTCACTAATCTTAGTTGGTGATTTATAACGAAAATTATT
1 TTTTTTCACTAGTCTTAGTTGGTTATTTATGACGACAATCATT
234650 TTT
1 TTT
234653 GTTACTATTA
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 35 0.49
43 36 0.51
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.50
Consensus pattern (43 bp):
TTTTTTCACTAGTCTTAGTTGGTTATTTATGACGACAATCATT
Found at i:238394 original size:98 final size:94
Alignment explanation
Indices: 238167--238397 Score: 259
Period size: 95 Copynumber: 2.4 Consensus size: 94
238157 ATAAAGCTAA
* * * *
238167 CTCTAAAGCAATTGGTTAAATGCCCCGGCTTTATAGATAAGATTCAGCTAGCCTGATAAAGGAGA
1 CTCTAGAGCAATTGGTTAAAAGCCCTGGCTTTATGGATAAGATTCAGCTAGCCTGATAAAGGAGA
*
238232 TTATAATATATAATAAAGCTCGAGTTGTC
66 TTATAATATATAATAAAGATCGAGTTGTC
* * * * *
238261 CTGCTAGAGCAATTGGTTAAAAG-CCTCGATGTTATGGATAATATTTAGCTAGCCTGATAAAGGT
1 CT-CTAGAGCAATTGGTTAAAAGCCCTGGCT-TTATGGATAAGATTCAGCTAGCCTGATAAAGGA
* * *
238325 GATTATAATTTCT-ATACAATGATATTGAGTTGTCC
64 GATTATAATATATAATA-AA-G--ATCGAGTTGT-C
*
238360 CTCTAGAGCAATTGGTTAAACGCCCTGGCTTTATGGAT
1 CTCTAGAGCAATTGGTTAAAAGCCCTGGCTTTATGGAT
238398 CCAGCTAGCC
Statistics
Matches: 113, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
94 9 0.08
95 60 0.53
96 1 0.01
98 35 0.31
99 8 0.07
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (94 bp):
CTCTAGAGCAATTGGTTAAAAGCCCTGGCTTTATGGATAAGATTCAGCTAGCCTGATAAAGGAGA
TTATAATATATAATAAAGATCGAGTTGTC
Found at i:238975 original size:84 final size:84
Alignment explanation
Indices: 238834--239795 Score: 1161
Period size: 84 Copynumber: 11.5 Consensus size: 84
238824 AAAGCACCTT
* * * * *
238834 CAACAAAAGACATTCGAGTTCAATTACATTCAGCTCAAAGACACATCATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* * *
238899 GGTGAGAAGGGCTATATGC
66 GGCGAGAAGGGTTATCTGC
* *
238918 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATATCATTTACAGCATAACTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* *
238983 GGTGAGAAGGGTTATCTGT
66 GGCGAGAAGGGTTATCTGC
* * * *
239002 CAATC--AAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAATTGTGTAGTATAACT
1 CAA-CAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-ATT-TGCAGCATAACT
*
239065 CAAGGCGAGAAGGTTTATCTG-
63 CAAGGCGAGAAGGGTTATCTGC
* * * * *
239086 --TCAAAAGACCTTCGAGTTTGATTACACTCAACTCAAAGGCACATCCAATTTACAACATAACTC
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-C-ATTTGCAGCATAACTC
* *
239149 AAGGCGATAAGGGTTATCTGT
64 AAGGCGAGAAGGGTTATCTGC
* * * **
239170 CAAC-CAAGACCTTCGCGTTCGATTACACTCAGCTCAAAGG-ACATCATTTGAAGCATAGTTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
*
239233 GGCGAGAAGGGTTATCTAC
66 GGCGAGAAGGGTTATCTGC
* * * *
239252 CAACAAAAGACCTTCGAGTTTGATTACACTCAACTCAAAGGCACATCATTTGTAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* * * *
239317 GGCGAAAAGGGCTATGTTC
66 GGCGAGAAGGGTTATCTGC
* *
239336 CAACAGAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* * * *
239401 GGCGATAAGAGCTATATGC
66 GGCGAGAAGGGTTATCTGC
* * *
239420 CAAAAAAAGACCTTCGAGTTCGATTACACTCAGCTCGAAGGCACATCATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* *
239485 GACGAGAAGGGTTATCTTC
66 GGCGAGAAGGGTTATCTGC
* * * * * **
239504 CAATAAAAGACATTCGAGTACGATTACACTCAGCTCAAATGCACTTCATTTATAGCATAACTC-A
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* *
239568 GGCGATAAGGGTTATCTGT
66 GGCGAGAAGGGTTATCTGC
* * * **
239587 CAAC-CAAGACCTTCGAGTTTGATTACACTCAGTTCAAAGGTGCATCATTTGCAGCATAACTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
* *
239651 GGTGAGAAGGGTTATCTAC
66 GGCGAGAAGGGTTATCTGC
* *
239670 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTGAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
*
239735 GGCGAGAAGGGTTATCTGT
66 GGCGAGAAGGGTTATCTGC
* * * *
239754 CAA-AAAATACCTTCGAGTTCGATTACATTCAGCCCAAGGGCA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
239796 TGTCAAATTC
Statistics
Matches: 755, Mismatches: 110, Indels: 27
0.85 0.12 0.03
Matches are distributed among these distances:
81 1 0.00
82 80 0.11
83 210 0.28
84 402 0.53
85 61 0.08
86 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (84 bp):
CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
GGCGAGAAGGGTTATCTGC
Found at i:239497 original size:334 final size:334
Alignment explanation
Indices: 238838--239795 Score: 1209
Period size: 334 Copynumber: 2.9 Consensus size: 334
238828 CACCTTCAAC
* * * *
238838 AAAAGACATTCGAGTTCAATTACATTCAGCTCAAAGACACATCATTTGCAGCATAGCTCAAGGTG
1 AAAAGACATTCGAGTTCGATTACACTCAGCTCAAAG-CACATCATTTGAAGCATAGCTCAAGGCG
* * * *
238903 AGAAGGGCTATATGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATATCATT
65 AGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATT
* *
238968 TACAGCATAACTCAAGGTGAGAAGGGTTATCTGT-CAATC-AAGACCTTCGAGTTCGATTACATT
130 TGCAGCATAACTCAAGGTGAGAAGGGTTATCT-TCCAA-CAAAGACCTTCGAGTTCGATTACACT
* * *
239031 CAGCTCAAAGGCATATCAATTGTGTAGTATAACTCAAGGCGAGAAGGTTTATCTGTC--AAAAGA
193 CAGCTCAAAGGCACATC-ATT-TGCAGCATAACTCAAGGCGAGAAGG-TTATCTGTCAAAAAAGA
* * * *
239094 CCTTCGAGTTTGATTACACTCAACTCAAAGGCACATCCAATTTACAACATAACTCAAGGCGATAA
255 CCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAACATAACTCAAGACGAGAA
239159 GGGTTATCTGT-CAA-
320 GGGTTATCT-TCCAAT
** * * * *
239173 CCAAGACCTTCGCGTTCGATTACACTCAGCTCAAAGGACATCATTTGAAGCATAGTTCAAGGCGA
1 AAAAGACATTCGAGTTCGATTACACTCAGCTCAAAGCACATCATTTGAAGCATAGCTCAAGGCGA
* *
239238 GAAGGGTTATCTACCAACAAAAGACCTTCGAGTTTGATTACACTCAACTCAAAGGCACATCATTT
66 GAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTT
* * * * * *
239303 GTAGCATAGCTCAAGGCGAAAAGGGCTATGTTCCAACAGAAGACCTTCGAGTTCGATTACACTCA
131 GCAGCATAACTCAAGGTGAGAAGGGTTATCTTCCAACA-AAGACCTTCGAGTTCGATTACACTCA
* * * * *
239368 GCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCGATAAGAGCTATATGCCAAAAAAAGACCT
195 GCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAG-GTTATCTGTC-AAAAAAGACCT
* * * *
239433 TCGAGTTCGATTACACTCAGCTCGAAGGCACAT-C-ATTTGCAGCATAGCTCAAGACGAGAAGGG
258 TCGAGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAACATAACTCAAGACGAGAAGGG
239496 TTATCTTCCAAT
323 TTATCTTCCAAT
* * *
239508 AAAAGACATTCGAGTACGATTACACTCAGCTCAAATGCACTTCATTT-ATAGCATAACTC-AGGC
1 AAAAGACATTCGAGTTCGATTACACTCAGCTCAAA-GCACATCATTTGA-AGCATAGCTCAAGGC
* * * * **
239571 GATAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTTGATTACACTCAGTTCAAAGGTGCATCAT
64 GAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCAT
*
239635 TTGCAGCATAACTCAAGGTGAGAAGGGTTATCTACCAACAAAAGACCTTCGAGTTCGATTACACT
129 TTGCAGCATAACTCAAGGTGAGAAGGGTTATCTTCCAAC-AAAGACCTTCGAGTTCGATTACACT
* * *
239700 CAGCTCAAAGGCACATCATTTACAGCATAACTGAAGGCGAGAAGGGTTATCTGTCAAAAAATACC
193 CAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAA-GGTTATCTGTCAAAAAAGACC
* * *
239765 TTCGAGTTCGATTACATTCAGCCCAAGGGCA
257 TTCGAGTTCGATTACACTCAGCTCAAAGGCA
239796 TGTCAAATTC
Statistics
Matches: 534, Mismatches: 76, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
333 65 0.12
334 289 0.54
335 124 0.23
336 56 0.10
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (334 bp):
AAAAGACATTCGAGTTCGATTACACTCAGCTCAAAGCACATCATTTGAAGCATAGCTCAAGGCGA
GAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTT
GCAGCATAACTCAAGGTGAGAAGGGTTATCTTCCAACAAAGACCTTCGAGTTCGATTACACTCAG
CTCAAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGTTATCTGTCAAAAAAGACCTTCG
AGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAACATAACTCAAGACGAGAAGGGTTA
TCTTCCAAT
Found at i:239860 original size:418 final size:418
Alignment explanation
Indices: 238834--239875 Score: 1305
Period size: 418 Copynumber: 2.5 Consensus size: 418
238824 AAAGCACCTT
* * * *
238834 CAACAAAAGACATTCGAGTTCAATTACATTCAGCTCAAAGACACATCATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* *
238899 GGTGAGAAGGGCTATATGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
66 GGCGAGAAGGGCTATATGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
* * * * *
238964 C-ATTTACAGCATAACTCAAGGT-GAGAAGGGTTATCTGTCAATCAAGACCTTCGAGTTCGATTA
131 CAATTCA-AGCATAACTCAA-GTCGAGAAGAGCTATCTGTCAATAAAAACCTTCGAGTTCGATTA
* * * * * *
239027 CATTCAGCTCAAAGGCATATCAATTGTGTAGTATAACTCAAGGCGAGAAGGTTTATCTGTCAAAA
194 CATTCAGCTCGAAGGCACATCAATTGTGCAGCATAACTCAAGACGAGAAGGGTTATCTGTCAAAA
* **
239092 GACCTTCGAGTTTGATTACACTCAACTCAAAGGCACATCCAATTTACAACATAACTCAAGGCGAT
259 GACATTCGAGTACGATTACACTCAACTCAAAGGCACATCCAATTTACAACATAACTCAAGGCGAT
*
239157 AAGGGTTATCTGTCAACCAAGACCTTCGCGTTCGATTACACTCAGCTCAAAGGACATCATTTGAA
324 AAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGACATCATTTGAA
**
239222 GCATAGTTCAAGGCGAGAAGGGTTATCTAC
389 GCATAACTCAAGGCGAGAAGGGTTATCTAC
* * *
239252 CAACAAAAGACCTTCGAGTTTGATTACACTCAACTCAAAGGCACATCATTTGTAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* * * *
239317 GGCGAAAAGGGCTATGT-TCCAACAGAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACA
66 GGCGAGAAGGGCTATATGT-CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATA
* * * * * * *
239381 TCATTTGC-AGCATAGCTCAAGGCGATAAGAGCTATATGCCAAAAAAAGACCTTCGAGTTCGATT
130 TCAATT-CAAGCATAACTCAAGTCGAGAAGAGCTATCTGTCAATAAAA-ACCTTCGAGTTCGATT
* *
239445 ACACTCAGCTCGAAGGCACATC-ATT-TGCAGCATAGCTCAAGACGAGAAGGGTTATCT-TCCAA
193 ACATTCAGCTCGAAGGCACATCAATTGTGCAGCATAACTCAAGACGAGAAGGGTTATCTGT-C--
* * * * *
239507 TAAAAGACATTCGAGTACGATTACACTCAGCTCAAATGCAC-TTC-ATTTATAGCATAACTC-AG
255 -AAAAGACATTCGAGTACGATTACACTCAACTCAAAGGCACATCCAATTTACAACATAACTCAAG
* * *
239569 GCGATAAGGGTTATCTGTCAACCAAGACCTTCGAGTTTGATTACACTCAGTTCAAAGGTGCATCA
319 GCGATAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGG-ACATCA
* *
239634 TTTGCAGCATAACTCAAGGTGAGAAGGGTTATCTAC
383 TTTGAAGCATAACTCAAGGCGAGAAGGGTTATCTAC
* * *
239670 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTGAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* * * * * * *
239735 GGCGAGAAGGGTTATCTGTCAA-AAAATACCTTCGAGTTCGATTACATTCAGCCCAAGGGCATGT
66 GGCGAGAAGGGCTATATGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
* * * * * * *
239799 CAAATTCATAGCATAACTTAAGTCGAGAAAAGCTATCGGTCAATGAAAACTTTCAAGTTCGATTC
131 C-AATTCA-AGCATAACTCAAGTCGAGAAGAGCTATCTGTCAATAAAAACCTTCGAGTTCGATTA
239864 CATTCAGCTCGA
194 CATTCAGCTCGA
239876 TGACGTATCC
Statistics
Matches: 530, Mismatches: 80, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
416 1 0.00
417 123 0.23
418 302 0.57
419 69 0.13
420 35 0.07
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (418 bp):
CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
GGCGAGAAGGGCTATATGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
CAATTCAAGCATAACTCAAGTCGAGAAGAGCTATCTGTCAATAAAAACCTTCGAGTTCGATTACA
TTCAGCTCGAAGGCACATCAATTGTGCAGCATAACTCAAGACGAGAAGGGTTATCTGTCAAAAGA
CATTCGAGTACGATTACACTCAACTCAAAGGCACATCCAATTTACAACATAACTCAAGGCGATAA
GGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGACATCATTTGAAGC
ATAACTCAAGGCGAGAAGGGTTATCTAC
Found at i:241883 original size:2 final size:2
Alignment explanation
Indices: 241871--241901 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
241861 ATTTTATTAA
241871 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
241902 CATTTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:241951 original size:21 final size:20
Alignment explanation
Indices: 241902--241952 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
241892 ATATATATAT
* *
241902 CATTTTTTTTATTTTTCTTT
1 CATTTTTTTTATTTTTATTC
*
241922 TATTATTTTTTATTTTTAATTC
1 CATT-TTTTTTATTTTT-ATTC
241944 CATTTTTTT
1 CATTTTTTT
241953 CTTTGTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 17 0.68
22 5 0.20
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (20 bp):
CATTTTTTTTATTTTTATTC
Found at i:245945 original size:95 final size:97
Alignment explanation
Indices: 245831--246064 Score: 289
Period size: 95 Copynumber: 2.4 Consensus size: 97
245821 ACAATAAAGT
* *
245831 TCCCTCTAAAGCAATTGGTTAAATGCCCCGGCTTTATGGATAAGATTCAGCTAGCCTGACAAAGA
1 TCCCTCTAGAGCAATTGGTTAAAAGCCCCGGCTTTATGGATAAGATTCAGCTAGCCTGACAAAGA
* *
245896 TTATTATAATATATAATA-AA-G-CTTGAGT-TG
66 TGATTATAATATAT-ATACAACGAATTGA-TCTG
* * * *
245926 T-TCTGCTAGAGCAATTGGTTAAAAGCCCCGGCTTTATGGATAATATTCAGCTAGCCTGATAGAG
1 TCCCT-CTAGAGCAATTGGTTAAAAGCCCCGGCTTTATGGATAAGATTCAGCTAGCCTGACAAAG
* *
245990 GTGATTATAATATCTATACAACGATATTGATCTG
65 ATGATTATAATATATATACAACGA-ATTGATCTG
* *
246024 TCCCTCTAGAGCAATTGGTTAAACGCCCCGGGTTTATGGAT
1 TCCCTCTAGAGCAATTGGTTAAAAGCCCCGGCTTTATGGAT
246065 CCAGCTATCC
Statistics
Matches: 119, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
94 5 0.04
95 69 0.58
96 1 0.01
97 1 0.01
98 41 0.34
99 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (97 bp):
TCCCTCTAGAGCAATTGGTTAAAAGCCCCGGCTTTATGGATAAGATTCAGCTAGCCTGACAAAGA
TGATTATAATATATATACAACGAATTGATCTG
Found at i:246980 original size:84 final size:84
Alignment explanation
Indices: 246839--247553 Score: 796
Period size: 84 Copynumber: 8.5 Consensus size: 84
246829 AAAGCATCTT
** * * *
246839 CAACAAAAGATTTTCGAGTTCAATTACACTCAGCTCAAAGACACATCATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAA
* *
246904 GGCGAGAAGGGCTATATGC
66 GGCGAGAAGGGTTATCTGC
* * * *
246923 CAACAAAATACCTTCGAGTTCAATTACACTCAGCTCAAAGGCATATCATTTACAGCATAACTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAA
*
246988 GGCGAGAAGGGTTATCTGT
66 GGCGAGAAGGGTTATCTGC
* * * ** * *
247007 CAAC-CAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAATTATGTAGTATAACTC
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC-ATT-TACAGCATAGCTC
* *
247071 AAGGCGATAAGGTTTATCTG-
64 AAGGCGAGAAGGGTTATCTGC
* * *
247091 --TCAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCCAATTTACAGCATAACTC
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-C-ATTTACAGCATAGCTC
* * *
247154 AAGGCAATAAGGGTTATCTGT
64 AAGGCGAGAAGGGTTATCTGC
* * * * *
247175 CAAC-CAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACACCATATGA-AGAATAGCTCA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAT-TTACAGCATAGCTCA
* *
247238 AGGCGAGAAGCGTTATCTAC
65 AGGCGAGAAGGGTTATCTGC
* * * *
247258 CAACAAAAAACCTTCGAGTTCGATTACACTCAACTCAAAGGCACATTATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAA
** * *
247323 GGTAAGAAGGGCTATCTTC
66 GGCGAGAAGGGTTATCTGC
* * *
247342 CAACATAAA-ACCTTTGAGTTCGATTACACTCAGCTAAAATGCACATCATTTACAGCATAGCTCA
1 CAACA-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCA
* * * *
247406 AGGTGATAAGGGCTATATGC
65 AGGCGAGAAGGGTTATCTGC
* * * * * *
247426 CAAAAAAAGACCTTCGAGTTTGATTACACTCAACTCGAAGGCACATCATTTGCAGCATAGCTTAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAA
247491 GGCGAGAAGGGTTATCTGC
66 GGCGAGAAGGGTTATCTGC
* * * *
247510 CAATAAAAGACCTTCAAGTACGATTACACTCAGTTCAAAGGCAC
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCAC
247554 TTCGAGTTTG
Statistics
Matches: 535, Mismatches: 84, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
82 1 0.00
83 137 0.26
84 326 0.61
85 70 0.13
86 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (84 bp):
CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAA
GGCGAGAAGGGTTATCTGC
Found at i:247650 original size:116 final size:116
Alignment explanation
Indices: 247437--247669 Score: 349
Period size: 116 Copynumber: 2.0 Consensus size: 116
247427 AAAAAAAGAC
* * *
247437 CTTCGAGTTTGATTACACTCAACTCGAAGGCACATCATTTGCAGCATAGCTTAAGGCGAGAAGGG
1 CTTCGAGTTTGATTACACTCAACTCAAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGG
* * *
247502 TTATCTGCCAATAAAAGACCTTCAAGTACGATTACACTCAGTTCAAAGGCA
66 TTATCTACCAACAAAAGACCTTCAAGTACGATTACACTCAGCTCAAAGGCA
** ** *
247553 CTTCGAGTTTGATTACACTCAGTTCAAAGGTGCATCATTTGCAGCATAACTCAAGGCGAGAATGG
1 CTTCGAGTTTGATTACACTCAACTCAAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGG
* *
247618 TTATCTACCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
66 TTATCTACCAACAAAAGACCTTCAAGTACGATTACACTCAGCTCAAAGGCA
247669 C
1 C
247670 ATCATTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
116 104 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (116 bp):
CTTCGAGTTTGATTACACTCAACTCAAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGG
TTATCTACCAACAAAAGACCTTCAAGTACGATTACACTCAGCTCAAAGGCA
Found at i:247694 original size:84 final size:83
Alignment explanation
Indices: 247553--247736 Score: 260
Period size: 84 Copynumber: 2.2 Consensus size: 83
247543 TTCAAAGGCA
* * ** * * *
247553 CTTCGAGTTTGATTACACTCAGTTCAAAGGTGCATCATTTGCAGCATAACTCAAGGCGAGAATGG
1 CTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGGCGAGAAAGG
*
247618 TTATCTACCAACAAAAGAC
66 TTACCTACCAAC-AAAGAC
247637 CTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGGCGAGAAAGG
1 CTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGGCGAGAAAGG
** *
247702 TTACCTGTCAACAAATAC
66 TTACCTACCAACAAAGAC
247720 CTTCGAGTTCGATTACA
1 CTTCGAGTTCGATTACA
247737 TTTAGCCCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
83 22 0.25
84 67 0.75
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (83 bp):
CTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGGCGAGAAAGG
TTACCTACCAACAAAGAC
Found at i:249198 original size:18 final size:18
Alignment explanation
Indices: 249164--249224 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 18
249154 TATTATCAAC
*
249164 TATTATTTTTATAATTTTTT
1 TATT-TTTTTAT-ATTTTCT
*
249184 TATTTTTTTATATTTTGT
1 TATTTTTTTATATTTTCT
*
249202 T-TTTATTT-TA-TTTCT
1 TATTTTTTTATATTTTCT
249217 TATTTTTT
1 TATTTTTT
249225 ACCTAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 5 0.14
16 7 0.19
17 6 0.17
18 7 0.19
19 7 0.19
20 4 0.11
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTTTTTTATATTTTCT
Found at i:249206 original size:21 final size:19
Alignment explanation
Indices: 249164--249224 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 19
249154 TATTATCAAC
249164 TATTATTTTTATAATTTTTT
1 TATT-TTTTTATAATTTTTT
*
249184 TATTTTTTTATATTTTGTTTT
1 TATTTTTTTATA-ATT-TTTT
* *
249205 TATTTTATTTCTTATTTTTT
1 TATTTT-TTTATAATTTTTT
249225 ACCTAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 8 0.24
20 10 0.29
21 12 0.35
22 4 0.12
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (19 bp):
TATTTTTTTATAATTTTTT
Found at i:249219 original size:12 final size:11
Alignment explanation
Indices: 249166--249222 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
249156 TTATCAACTA
*
249166 TTATTTTTATAA
1 TTATTTTTAT-T
249178 TT-TTTTTATT
1 TTATTTTTATT
*
249188 TT-TTTATATT
1 TTATTTTTATT
*
249198 TTGTTTTTATT
1 TTATTTTTATT
249209 TTATTTCTTATT
1 TTATTT-TTATT
249221 TT
1 TT
249223 TTACCTAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 11 0.28
11 19 0.49
12 9 0.23
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:249494 original size:14 final size:14
Alignment explanation
Indices: 249477--249503 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
249467 TTTATTATTA
249477 TTATTTTTCTTTTC
1 TTATTTTTCTTTTC
249491 TTATTTTTCTTTT
1 TTATTTTTCTTTT
249504 TTAATTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.81
Consensus pattern (14 bp):
TTATTTTTCTTTTC
Found at i:249550 original size:18 final size:18
Alignment explanation
Indices: 249516--249561 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
249506 AATTCCATTT
*
249516 TTTTATTTGTTTTTTCTTG
1 TTTTATTT-TCTTTTCTTG
*
249535 TTTTATTTTCTTTTCTTT
1 TTTTATTTTCTTTTCTTG
249553 TTTTATTTT
1 TTTTATTTT
249562 TATTTATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.07, C:0.07, G:0.04, T:0.83
Consensus pattern (18 bp):
TTTTATTTTCTTTTCTTG
Found at i:249614 original size:10 final size:11
Alignment explanation
Indices: 249583--249625 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
249573 CGATTTTGTT
249583 TCTTTTGTTTTA
1 TCTTTT-TTTTA
*
249595 TTTTTATTTTTA
1 TCTTT-TTTTTA
249607 -CTTTTTTTTA
1 TCTTTTTTTTA
249617 TCTTTTTTT
1 TCTTTTTTT
249626 CCTTTGTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 6 0.22
11 11 0.41
12 9 0.33
13 1 0.04
ACGTcount: A:0.09, C:0.07, G:0.02, T:0.81
Consensus pattern (11 bp):
TCTTTTTTTTA
Found at i:251185 original size:20 final size:21
Alignment explanation
Indices: 251138--251189 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
251128 TCATGCAATG
*
251138 GGTATCGATA-TTGTAGGTGA
1 GGTATCGATACTCGTAGGTGA
* *
251158 GGTGTCGATACTCGTAGG-GT
1 GGTATCGATACTCGTAGGTGA
251178 GGTATCGATACT
1 GGTATCGATACT
251190 GAGTTTACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.33
Consensus pattern (21 bp):
GGTATCGATACTCGTAGGTGA
Found at i:251250 original size:18 final size:20
Alignment explanation
Indices: 251227--251272 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
251217 AAATTCGTAT
251227 CGATACTC-ATGG-GAGTAC
1 CGATACTCAATGGAGAGTAC
251245 CGATAC-CAATGGTAGAGTAC
1 CGATACTCAATGG-AGAGTAC
*
251265 TGATACTC
1 CGATACTC
251273 TTAAATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
20 11 0.48
21 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (20 bp):
CGATACTCAATGGAGAGTAC
Found at i:257512 original size:16 final size:16
Alignment explanation
Indices: 257488--257525 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
257478 TTAATCCTCG
*
257488 TATTATTATAATTTAT
1 TATTTTTATAATTTAT
*
257504 TATTTTTATAATTTTT
1 TATTTTTATAATTTAT
257520 TATTTT
1 TATTTT
257526 ATTTCTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTTATAATTTAT
Found at i:257778 original size:2 final size:2
Alignment explanation
Indices: 257766--257802 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
257756 ATTAAATACC
257766 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
257803 CATTTTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:262326 original size:20 final size:21
Alignment explanation
Indices: 262289--262329 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
262279 TGCAGAGATT
262289 TCATCCCCAAACGGCTAGAAA
1 TCATCCCCAAACGGCTAGAAA
*
262310 TCATCCCC-AATGGCTAGAAA
1 TCATCCCCAAACGGCTAGAAA
262330 CGTCCACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.37, C:0.32, G:0.15, T:0.17
Consensus pattern (21 bp):
TCATCCCCAAACGGCTAGAAA
Found at i:263435 original size:107 final size:105
Alignment explanation
Indices: 263315--263540 Score: 283
Period size: 107 Copynumber: 2.1 Consensus size: 105
263305 AATAATGAAT
* * *
263315 AATT-TATTGATAATAATGTCGAACATTTGGTCACTAAAAAACACTTAGTGTGACAACATTGGTG
1 AATTATATTGATAATAATATCAAACATTTGGTCACTAAAAAACACTTAGTGTGACAACATTGATG
* * *
263379 GTCAAAAAAAATATACTTTCAGTGTCAAATAAATTTATCACA
66 GTC--AAAAAATATACTTTCAGTATCAAACAAATTCATCACA
* * * * *
263421 ATTTATATTGATAATAGTATCAAACATTTTGTCACTAAAAAATACTTAGTGTGACAATATTGATG
1 AATTATATTGATAATAATATCAAACATTTGGTCACTAAAAAACACTTAGTGTGACAACATTGATG
* * * * *
263486 GTCACAAAATATATTTTTAGTATCAGACAAATTCATCTCA
66 GTCAAAAAATATACTTTCAGTATCAAACAAATTCATCACA
263526 AATTATATTGATAAT
1 AATTATATTGATAAT
263541 TGTATCGAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
105 43 0.42
106 3 0.03
107 56 0.55
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (105 bp):
AATTATATTGATAATAATATCAAACATTTGGTCACTAAAAAACACTTAGTGTGACAACATTGATG
GTCAAAAAATATACTTTCAGTATCAAACAAATTCATCACA
Found at i:263568 original size:107 final size:106
Alignment explanation
Indices: 263315--263566 Score: 267
Period size: 105 Copynumber: 2.4 Consensus size: 106
263305 AATAATGAAT
* * * ** *
263315 AATT-TATTGATAATAATGTCGAACATTTGGTCACTAAAAAACACTTAGTGTGACAACATTGGTG
1 AATTATATTGATAATAGTATCAAACAGATGGTCACTAAAAAACACTTAGTGTGACAACATTGATG
* * *
263379 GTCAAAAAAAATATACTTTCAGTGTCAAATAAATTTATCACA
66 GTC-AAAAAAATATACTTTCAGTATCAAACAAATTCATCACA
* ** * * *
263421 ATTTATATTGATAATAGTATCAAACATTTTGTCACTAAAAAATACTTAGTGTGACAATATTGATG
1 AATTATATTGATAATAGTATCAAACAGATGGTCACTAAAAAACACTTAGTGTGACAACATTGATG
* * * * *
263486 GTC-ACAAAATATATTTTTAGTATCAGACAAATTCATCTCA
66 GTCAAAAAAATATACTTTCAGTATCAAACAAATTCATCACA
* * *
263526 AATTATATTGATAATTGTATCGAATAGATGGTCA-TAAAAAA
1 AATTATATTGATAATAGTATCAAACAGATGGTCACTAAAAAA
263567 AACAATTGTG
Statistics
Matches: 122, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
104 7 0.06
105 56 0.46
106 3 0.02
107 56 0.46
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (106 bp):
AATTATATTGATAATAGTATCAAACAGATGGTCACTAAAAAACACTTAGTGTGACAACATTGATG
GTCAAAAAAATATACTTTCAGTATCAAACAAATTCATCACA
Found at i:265230 original size:26 final size:27
Alignment explanation
Indices: 265183--265233 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
265173 TTTATTATTA
* * *
265183 ATCATTGACTGTTGATCGTTGACTTCG
1 ATCAATGACTGTTGACCATTGACTTCG
265210 ATCAATGACT-TTGACCATTGACTT
1 ATCAATGACTGTTGACCATTGACTT
265234 TTTCGTTAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
ATCAATGACTGTTGACCATTGACTTCG
Found at i:265231 original size:13 final size:13
Alignment explanation
Indices: 265183--265234 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
265173 TTTATTATTA
265183 ATCATTGACTGTTG
1 ATCATTGACT-TTG
* *
265197 ATCGTTGACTTCG
1 ATCATTGACTTTG
*
265210 ATCAATGACTTTG
1 ATCATTGACTTTG
*
265223 ACCATTGACTTT
1 ATCATTGACTTT
265235 TTCGTTAACC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
13 22 0.71
14 9 0.29
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (13 bp):
ATCATTGACTTTG
Found at i:270884 original size:20 final size:21
Alignment explanation
Indices: 270830--270892 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
270820 GATTCCCCTG
270830 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
270854 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
270874 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
270893 TGCACAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:274745 original size:22 final size:21
Alignment explanation
Indices: 274703--274742 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
274693 GAGTTTGTTT
*
274703 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
274724 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
274743 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:277132 original size:36 final size:37
Alignment explanation
Indices: 277069--277138 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
277059 CGCATAACTT
*
277069 AAAATGTTATTTTTTCCTAACC-TTTTTTGTTGAATC
1 AAAATGTTATTTATTCCTAACCATTTTTTGTTGAATC
*
277105 AAAATGTTATATTATTCGTAA-CATTTTTTGTTGA
1 AAAATGTTAT-TTATTCCTAACCATTTTTTGTTGA
277139 CAGTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
36 11 0.37
37 19 0.63
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (37 bp):
AAAATGTTATTTATTCCTAACCATTTTTTGTTGAATC
Found at i:280210 original size:22 final size:21
Alignment explanation
Indices: 280185--280237 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
280175 AAATGGATTG
280185 AAGGGTTAAGTCCTTTCGATGA
1 AAGGGTTAA-TCCTTTCGATGA
* *
280207 AAGGACTT-ATCCTTTTGATGA
1 AAGG-GTTAATCCTTTCGATGA
280228 AAGGGCTTAA
1 AAGGG-TTAA
280238 CATTTTCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
21 17 0.68
22 6 0.24
23 2 0.08
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (21 bp):
AAGGGTTAATCCTTTCGATGA
Found at i:280219 original size:21 final size:21
Alignment explanation
Indices: 280195--280236 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
280185 AAGGGTTAAG
280195 TCCTTTCGATGAAAGGACTTA
1 TCCTTTCGATGAAAGGACTTA
* *
280216 TCCTTTTGATGAAAGGGCTTA
1 TCCTTTCGATGAAAGGACTTA
280237 ACATTTTCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (21 bp):
TCCTTTCGATGAAAGGACTTA
Found at i:280249 original size:21 final size:22
Alignment explanation
Indices: 280198--280250 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
280188 GGTTAAGTCC
* *
280198 TTTCGATGAAAGGACTTATCCT
1 TTTCGATGAAAGGACTTAACAT
*
280220 TTT-GATGAAAGGGCTTAACAT
1 TTTCGATGAAAGGACTTAACAT
280241 TTTCG-TGAAA
1 TTTCGATGAAA
280251 TGATTTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (22 bp):
TTTCGATGAAAGGACTTAACAT
Found at i:280938 original size:16 final size:18
Alignment explanation
Indices: 280917--280951 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
280907 TACATATGAA
280917 TAAAATAT-T-AATTTAT
1 TAAAATATATAAATTTAT
280933 TAAAATATATAAATTTAT
1 TAAAATATATAAATTTAT
280951 T
1 T
280952 TGGTGCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 1 0.06
18 8 0.47
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATATATAAATTTAT
Found at i:281356 original size:19 final size:20
Alignment explanation
Indices: 281334--281408 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 20
281324 AGAATAAATA
281334 TATTTA-AAATTATATTAAT
1 TATTTATAAATTATATTAAT
* *
281353 TATTTATTAAAATATA-AATAT
1 TATTTA-TAAATTATATTA-AT
*
281374 TATATTATCAATTATATTAAT
1 TAT-TTATAAATTATATTAAT
281395 TATTTATTAAATTA
1 TATTTA-TAAATTA
281409 AAAATATTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
19 6 0.14
20 4 0.09
21 30 0.68
22 4 0.09
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (20 bp):
TATTTATAAATTATATTAAT
Found at i:281375 original size:21 final size:21
Alignment explanation
Indices: 281327--281419 Score: 72
Period size: 21 Copynumber: 4.6 Consensus size: 21
281317 TTTTATTAGA
281327 ATAAATA-TATTTA--AAATT
1 ATAAATATTATTTATTAAATT
* *
281345 AT-ATTAATTATTTATTAAAAT
1 ATAAAT-ATTATTTATTAAATT
*
281366 ATAAATATTATATTA-TCAATT
1 ATAAATATTAT-TTATTAAATT
*
281387 AT-ATTAATTATTTATTAAATT
1 ATAAAT-ATTATTTATTAAATT
*
281408 AAAAATATTATT
1 ATAAATATTATT
281420 ATAATATTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
17 2 0.04
18 3 0.05
19 6 0.11
20 5 0.09
21 34 0.60
22 7 0.12
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAATATTATTTATTAAATT
Found at i:281420 original size:17 final size:17
Alignment explanation
Indices: 281398--281451 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
281388 TATTAATTAT
281398 TTATTAAATTAAAAATA
1 TTATTAAATTAAAAATA
281415 TTATTATAATATTAAAAATA
1 TTA-T-TAA-ATTAAAAATA
* * *
281435 ATGTTAAAATAAAAATA
1 TTATTAAATTAAAAATA
281452 CTGTATTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.39
18 4 0.13
19 4 0.13
20 11 0.35
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
TTATTAAATTAAAAATA
Found at i:281445 original size:20 final size:20
Alignment explanation
Indices: 281405--281445 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
281395 TATTTATTAA
* *
281405 ATTAAAAATATTATTATAAT
1 ATTAAAAATAATATTAAAAT
*
281425 ATTAAAAATAATGTTAAAAT
1 ATTAAAAATAATATTAAAAT
281445 A
1 A
281446 AAAATACTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
ATTAAAAATAATATTAAAAT
Found at i:283180 original size:18 final size:17
Alignment explanation
Indices: 283141--283174 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
283131 TTGTATTGTT
*
283141 TCTTTTCCTATACTTAC
1 TCTTTTCCTATACTAAC
283158 TCTTTTCCCTATACTAA
1 TCTTTT-CCTATACTAA
283175 TCCTTTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (17 bp):
TCTTTTCCTATACTAAC
Found at i:287750 original size:4 final size:4
Alignment explanation
Indices: 287741--287766 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
287731 CCATGACTAC
287741 ACAT ACAT ACAT ACAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACAT ACAT AC
287767 TAAAAGCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:290558 original size:2 final size:2
Alignment explanation
Indices: 290553--290580 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
290543 ACACACATTA
290553 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
290581 TAAAACAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:293554 original size:22 final size:22
Alignment explanation
Indices: 293529--293792 Score: 469
Period size: 22 Copynumber: 12.1 Consensus size: 22
293519 GGTATTTAAC
*
293529 AATTAAAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
*
293551 AATTAAAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293573 AATTAGAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293595 AATTAGAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293617 AATT--AGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293637 AATTAGAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
*
293659 AATTAGATAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293681 AATTAGAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293703 AATTAGAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
*
293725 AATTAGAGAGAGAGAAATTAGT
1 AATTAGAGAGAGAGAAATGAGT
*
293747 AATTAGAGAGAGAGAAATGAAT
1 AATTAGAGAGAGAGAAATGAGT
293769 AATTAGAGAGAGAGAAATGAGT
1 AATTAGAGAGAGAGAAATGAGT
293791 AA
1 AA
293793 CAAGTAAATT
Statistics
Matches: 233, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
20 20 0.09
22 213 0.91
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.19
Consensus pattern (22 bp):
AATTAGAGAGAGAGAAATGAGT
Found at i:293644 original size:16 final size:17
Alignment explanation
Indices: 293605--293647 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 17
293595 AATTAGAGAG
293605 AGAGAAATGAGTAATTAGA
1 AGAGAAATGAGTAATT--A
293624 GAGAGAAATGAGTAATTA
1 -AGAGAAATGAGTAATTA
293642 GAGAGA
1 -AGAGA
293648 GAGAAATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.51, C:0.00, G:0.30, T:0.19
Consensus pattern (17 bp):
AGAGAAATGAGTAATTA
Found at i:295220 original size:26 final size:25
Alignment explanation
Indices: 295174--295251 Score: 72
Period size: 26 Copynumber: 3.1 Consensus size: 25
295164 AAAGGTTAGT
*
295174 AAAAATAAATAAATAATAATAATAAA
1 AAAAAT-AATAAAGAATAATAATAAA
295200 CAAAAATAATACAAGAA-AATAATAAA
1 -AAAAATAATA-AAGAATAATAATAAA
* *
295226 AGAAAATAA-AATGAATAA-AACAAA
1 A-AAAATAATAAAGAATAATAATAAA
295250 AA
1 AA
295252 GTAAAGGGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
23 1 0.02
24 10 0.22
25 4 0.09
26 20 0.44
27 10 0.22
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.17
Consensus pattern (25 bp):
AAAAATAATAAAGAATAATAATAAA
Found at i:295228 original size:13 final size:13
Alignment explanation
Indices: 295191--295234 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
295181 AATAAATAAT
295191 AATAATAAACA-AA
1 AATAATAAA-AGAA
*
295204 AATAATACAAGAA
1 AATAATAAAAGAA
295217 AATAATAAAAGAA
1 AATAATAAAAGAA
295230 AATAA
1 AATAA
295235 AATGAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 1 0.04
13 27 0.96
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.16
Consensus pattern (13 bp):
AATAATAAAAGAA
Found at i:295244 original size:19 final size:18
Alignment explanation
Indices: 295215--295250 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
295205 ATAATACAAG
*
295215 AAAATAATAAAAGAAAAT
1 AAAATAATAAAACAAAAT
295233 AAAATGAATAAAACAAAA
1 AAAAT-AATAAAACAAAA
295251 AGTAAAGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAATAATAAAACAAAAT
Found at i:296521 original size:23 final size:24
Alignment explanation
Indices: 296495--296539 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
296485 ATATATTATA
*
296495 TATAAAAAATAT-TTTTCAAAACC
1 TATAAAAAATATAATTTCAAAACC
* *
296518 TATATAATATATAATTTCAAAA
1 TATAAAAAATATAATTTCAAAA
296540 ATATTTTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (24 bp):
TATAAAAAATATAATTTCAAAACC
Found at i:296608 original size:29 final size:32
Alignment explanation
Indices: 296557--296625 Score: 90
Period size: 30 Copynumber: 2.2 Consensus size: 32
296547 AAAATTATAT
* * *
296557 ATTATATACTTTTTTAAAAATG-TTTT-CAAA
1 ATTATATACGTTTTCAAAAATGTTTTTAAAAA
296587 ATTATATA-GTTTTCAAAAATGTTTTTAAAAA
1 ATTATATACGTTTTCAAAAATGTTTTTAAAAA
296618 ATTATATA
1 ATTATATA
296626 TTATATATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 11 0.32
30 12 0.35
31 11 0.32
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (32 bp):
ATTATATACGTTTTCAAAAATGTTTTTAAAAA
Found at i:296639 original size:29 final size:28
Alignment explanation
Indices: 296607--296686 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 28
296597 TTTCAAAAAT
296607 GTTTTTAAAAAATTATATATTATATATAA
1 GTTTTTAAAAAA-TATATATTATATATAA
* * *
296636 GTTTTCAAAAAATGT-T-TTATAATATAT
1 GTTTTTAAAAAATATATATTAT-ATATAA
*
296663 GTTTTT-AAAACTATATATTATATA
1 GTTTTTAAAAAATATATATTATATA
296687 CTTTCAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
26 10 0.24
27 15 0.36
28 6 0.14
29 11 0.26
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (28 bp):
GTTTTTAAAAAATATATATTATATATAA
Found at i:296694 original size:156 final size:154
Alignment explanation
Indices: 296506--296786 Score: 365
Period size: 156 Copynumber: 1.8 Consensus size: 154
296496 ATAAAAAATA
* * *
296506 TTTTTCAAAACCTATATAATATATAATTTCAAAAATATTTT-AAAATTATATATTATAT-ACT-T
1 TTTTTCAAAACCTATATAATATATAATTTC-AAAATATTTTAAAAACTATATAATATATAAATGT
* * *
296568 TTTTAAAAATGTTTTCAAAATTATATAGTTTTCAAAAATGTTTTTAAAAAATTATATATTATATA
65 TTTCAAAAATGTTTT--AAATAATAT-GTTTT-AAAAATG-TTTT-AAAAACTATATATTATATA
296633 TAAGTTTTCAAAAAATGTTTTATAATATATG
124 TAAGTTTTCAAAAAATGTTTTATAATATATG
* * *
296664 TTTTT-AAAA-CTATATATTATATACTTTCAAAATGTTTTAAAAACTATATAATATATAAATGTT
1 TTTTTCAAAACCTATATAATATATAATTTCAAAATATTTTAAAAACTATATAATATATAAATGTT
* *
296727 TTCAAAAATGTTTTATATAATATGTTTTTAAAATGTTTTAAAAACTATATATTATATATA
66 TTCAAAAATGTTTTAAATAATATGTTTTAAAAATGTTTTAAAAACTATATATTATATATA
296787 CTTTCAAAAT
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
152 20 0.18
153 4 0.04
154 6 0.06
155 14 0.13
156 39 0.36
157 6 0.06
158 20 0.18
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (154 bp):
TTTTTCAAAACCTATATAATATATAATTTCAAAATATTTTAAAAACTATATAATATATAAATGTT
TTCAAAAATGTTTTAAATAATATGTTTTAAAAATGTTTTAAAAACTATATATTATATATAAGTTT
TCAAAAAATGTTTTATAATATATG
Found at i:296737 original size:12 final size:11
Alignment explanation
Indices: 296720--296770 Score: 57
Period size: 11 Copynumber: 4.3 Consensus size: 11
296710 TATAATATAT
296720 AAATGTTTTCAA
1 AAATGTTTT-AA
296732 AAATGTTTTATA
1 AAATGTTTTA-A
*
296744 TAATATGTTTTTA
1 -AA-ATGTTTTAA
296757 AAATGTTTTAA
1 AAATGTTTTAA
296768 AAA
1 AAA
296771 CTATATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 12 0.35
12 12 0.35
13 3 0.09
14 7 0.21
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (11 bp):
AAATGTTTTAA
Found at i:296754 original size:87 final size:92
Alignment explanation
Indices: 296587--296833 Score: 253
Period size: 100 Copynumber: 2.6 Consensus size: 92
296577 TGTTTTCAAA
* * *
296587 ATTATATAGTTTTCAAAAATGTTTTTAAAAAATTATATATTATATATAAGTTTTCAAAAAATGTT
1 ATTATATAGCTTTCAAAAATGTTTTTAAAAAACTATATAATATATATAAGTTTTCAAAAAATGTT
296652 TTATAATATATGTTTTTAAAACTATAT
66 TTATAATATATGTTTTTAAAACTATAT
296679 ATTATATA-CTTTC-AAAATG-TTTT-AAAAACTATATAATATATA-AATGTTTTC-AAAAATGT
1 ATTATATAGCTTTCAAAAATGTTTTTAAAAAACTATATAATATATATAA-GTTTTCAAAAAATG-
*
296738 TTTATATAATATGTTTTTAAAATGTTTTAAAAACTATAT
64 TTT-TATAATA------T---ATGTTTTTAAAACTATAT
*
296777 ATTATATATACTTTC-AAAATG-TTTT-AAAAACTATATAATATATA-AATGTTTTCAAAA
1 ATTATATA-GCTTTCAAAAATGTTTTTAAAAAACTATATAATATATATAA-GTTTTCAAAA
296834 TATTTTTCAA
Statistics
Matches: 136, Mismatches: 4, Indels: 21
0.84 0.02 0.13
Matches are distributed among these distances:
87 9 0.07
88 26 0.19
89 11 0.08
90 6 0.04
91 4 0.03
92 8 0.06
95 1 0.01
98 25 0.18
100 43 0.32
101 3 0.02
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.46
Consensus pattern (92 bp):
ATTATATAGCTTTCAAAAATGTTTTTAAAAAACTATATAATATATATAAGTTTTCAAAAAATGTT
TTATAATATATGTTTTTAAAACTATAT
Found at i:296759 original size:25 final size:25
Alignment explanation
Indices: 296715--296766 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
296705 AACTATATAA
296715 TATATAAATGTTTTCAAAAATGTTT
1 TATATAAATGTTTTCAAAAATGTTT
*
296740 TATATAATATGTTTT-TAAAATGTTT
1 TATATAA-ATGTTTTCAAAAATGTTT
296765 TA
1 TA
296767 AAAACTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (25 bp):
TATATAAATGTTTTCAAAAATGTTT
Found at i:296795 original size:100 final size:101
Alignment explanation
Indices: 296647--296833 Score: 326
Period size: 100 Copynumber: 1.9 Consensus size: 101
296637 TTTTCAAAAA
*
296647 ATGTTTTATAATATATGTTTTTAAAACTATATATTATATACTTTCAAAATGTTTTAAAAACTATA
1 ATGTTTTATAATATATGTTTTAAAAACTATATATTATATACTTTCAAAATGTTTTAAAAACTATA
296712 TAATATATAAATGTTTTCAAAAATGTTTTATATAAT
66 TAATATATAAATGTTTTCAAAAATGTTTTATATAAT
296748 ATGTTTT-TAA-A-ATGTTTTAAAAACTATATATTATATATACTTTCAAAATGTTTTAAAAACTA
1 ATGTTTTATAATATATGTTTTAAAAACTATATA-T-TATATACTTTCAAAATGTTTTAAAAACTA
296810 TATAATATATAAATGTTTTCAAAA
64 TATAATATATAAATGTTTTCAAAA
296834 TATTTTTCAA
Statistics
Matches: 83, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
98 18 0.22
99 2 0.02
100 56 0.67
101 7 0.08
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (101 bp):
ATGTTTTATAATATATGTTTTAAAAACTATATATTATATACTTTCAAAATGTTTTAAAAACTATA
TAATATATAAATGTTTTCAAAAATGTTTTATATAAT
Found at i:296859 original size:75 final size:76
Alignment explanation
Indices: 296740--296919 Score: 211
Period size: 75 Copynumber: 2.4 Consensus size: 76
296730 AAAAATGTTT
* * * * * * * *
296740 TATATAATATGTTTTTAAAAT-GTTTTAAAAACTATATATTATATATACTTTCAAAATGTTTT-A
1 TATATAA-ATGTTTTCAAAATATTTTTCAAAACCATATACTATATAGACTTTAAAAACGTTTTCA
296803 AAAACTATATAA
65 AAAACTATATAA
*
296815 TATATAAATGTTTTCAAAATATTTTTCAAAACCATATACTATATAGATTTTAAAAACGTTTTCAA
1 TATATAAATGTTTTCAAAATATTTTTCAAAACCATATACTATATAGACTTTAAAAACGTTTTCAA
296880 AAACTATATAA
66 AAACTATATAA
** *
296891 TATATACTTATTTTCAAAAATCATTTTTC
1 TATATAAATGTTTTC-AAAAT-ATTTTTC
296920 CGAAAATTAT
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
74 12 0.13
75 40 0.45
76 25 0.28
77 5 0.06
78 7 0.08
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (76 bp):
TATATAAATGTTTTCAAAATATTTTTCAAAACCATATACTATATAGACTTTAAAAACGTTTTCAA
AAACTATATAA
Found at i:296895 original size:37 final size:36
Alignment explanation
Indices: 296751--296896 Score: 150
Period size: 36 Copynumber: 3.9 Consensus size: 36
296741 ATATAATATG
* * *
296751 TTTTTAAAATGTTTTAAAAACTATATATTATATATA
1 TTTTAAAAATGTTTTAAAAACTATATAATATATAAA
* *
296787 CTTTCAAAATGTTTTAAAAACTATATAATATATAAA
1 TTTTAAAAATGTTTTAAAAACTATATAATATATAAA
* * * *
296823 TGTTTTCAAAATAT-TTTTCAAAACCATATACTATATAGA
1 --TTTT-AAAA-ATGTTTTAAAAACTATATAATATATAAA
*
296862 TTTTAAAAACGTTTTCAAAAACTATATAATATATA
1 TTTTAAAAATGTTTT-AAAAACTATATAATATATA
296897 CTTATTTTCA
Statistics
Matches: 90, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
35 1 0.01
36 40 0.44
37 20 0.22
38 3 0.03
39 24 0.27
40 2 0.02
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (36 bp):
TTTTAAAAATGTTTTAAAAACTATATAATATATAAA
Found at i:296961 original size:78 final size:75
Alignment explanation
Indices: 296720--296977 Score: 197
Period size: 78 Copynumber: 3.4 Consensus size: 75
296710 TATAATATAT
* * * * * * * * *
296720 AAATGTTTTCAAAAA-TGTTTTATATA-ATATGTTTTTAAAAT-GTTTTAAAAACTATATATTAT
1 AAATGTTTTCAAAAACTATATAATATATACATATTTTCAAAATATTTTTCAAAAC-ATATACTAT
* *
296782 ATATACTTTCA
65 ATAGATTTTCA
* *
296793 AAATGTTTT-AAAAACTATATAATATATAAATGTTTTCAAAATATTTTTCAAAACCATATACTAT
1 AAATGTTTTCAAAAACTATATAATATATACATATTTTCAAAATATTTTTCAAAA-CATATACTAT
*
296857 ATAGATTTTAA
65 ATAGATTTTCA
* * *
296868 AAACGTTTTCAAAAACTATATAATATATACTTATTTTCAAAAATCATTTTTCCGAAAA-TTATAC
1 AAATGTTTTCAAAAACTATATAATATATACATATTTTC-AAAAT-ATTTTT-C-AAAACATATAC
*
296932 -ATTATA-TTTTGTCA
62 TA-TATAGATTT-TCA
* * *
296946 AAATATTTTCAAAAACTGTATTACTATATACA
1 AAATGTTTTCAAAAACTATA-TAATATATACA
296978 CACATATATA
Statistics
Matches: 150, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
72 5 0.03
73 17 0.11
74 13 0.09
75 32 0.21
76 26 0.17
77 9 0.06
78 34 0.23
79 10 0.07
80 4 0.03
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (75 bp):
AAATGTTTTCAAAAACTATATAATATATACATATTTTCAAAATATTTTTCAAAACATATACTATA
TAGATTTTCA
Found at i:297748 original size:84 final size:84
Alignment explanation
Indices: 297610--298477 Score: 605
Period size: 84 Copynumber: 10.5 Consensus size: 84
297600 GCCTTGGGCT
* * * *
297610 TGCTGTAAATGATGTG-CCTTGCAGCTGAGCGTAGTCAAACTC-GAAGGTCCTTTGGAGATAGAT
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAG-AGGT-CTTTGGAGACAGAT
* *
297673 AACCCTTCTAGCCTTGAGTTA
64 AACCCTTCTAGACTTAAGTTA
** * * * * * * * * *
297694 TATTGTAAATGATGTACCCTCGAAGCTGAGTGTAATCGAACTCCGGGGTCTTT-G-G-CAGCTAG
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTCTTTGGAGACAGATAA
* *
297756 CCCTTCTCGACTTAAGCTA
66 CCCTTCTAGACTTAAGTTA
** * * * ** * *
297775 TATTGCAAATGAAGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTCGTTGGCAAATA
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTCTTT-GGAGACAGATA
* * * * *
297839 GCCCTTCTTGCCTTGAGCTA
65 ACCCTTCTAGACTTAAGTTA
* * * * * * *
297859 TGTTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTT-G-G-CAGATAA
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTCTTTGGAGACAGATAA
* * * *
297921 TCCTTATCGACTTAAGCTA
66 CCCTTCTAGACTTAAGTTA
* * * * ** * *
297940 TGGTACAAATGATGTGCCGTTG-AGCTGAGCGTAGTCAAACTCAGAGGTCTTTTGTTGGCAGACA
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTC-TTTGGAGACAGATA
*
298004 ACCCTTCTAGACTTAAGTTG
65 ACCCTTCTAGACTTAAGTTA
* * *
298024 TGCTGCAAATGATATG-CCTTGGAGCTAAGCGTAGTCGAACTC-GAAGGTCTTT-GATGACAGAT
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAG-AGGTCTTTGGA-GACAGAT
* *
298086 AACCCTTCTAGCCTTGAGTTA
64 AACCCTTCTAGACTTAAGTTA
* * * * * *
298107 TGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTCTTT-G-G-CAGATAA
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTCTTTGGAGACAGATAA
298169 CCCTTCTCA-ACTTAAGTTA
66 CCCTTCT-AGACTTAAGTTA
* * * ** * * *
298188 TACTGCAAATGATGTGCCGTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCATACA
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTC-TTTGGAGACAGATA
* *
298252 AACCTTCTAGACTTAAGTTG
65 ACCCTTCTAGACTTAAGTTA
* * * * * *
298272 TGCTGCAAATAATATG-CCTTGGAGCTAAGCGTAGTCAAACTC-GAAGGTCTTTGGTGACAGATA
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAG-AGGTCTTTGGAGACAGATA
* *
298335 ACCCTTCTAGCCTTGAGTTA
65 ACCCTTCTAGACTTAAGTTA
* * * * * * * * *
298355 TGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTT-G-G-CAGGTAG
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTCTTTGGAGACAGATAA
*
298417 CCCTTCTCGACTTAAGTTA
66 CCCTTCTAGACTTAAGTTA
* * * * **
298436 TGCTGTAAATGATATG-CCTTGGACCTGAGCGTAACCGAACTC
1 TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTC
298478 GAAGGCCTTT
Statistics
Matches: 623, Mismatches: 135, Indels: 56
0.77 0.17 0.07
Matches are distributed among these distances:
80 95 0.15
81 152 0.24
82 5 0.01
83 96 0.15
84 219 0.35
85 55 0.09
86 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (84 bp):
TGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCAGAGGTCTTTGGAGACAGATAA
CCCTTCTAGACTTAAGTTA
Found at i:297895 original size:165 final size:164
Alignment explanation
Indices: 297610--298530 Score: 786
Period size: 165 Copynumber: 5.6 Consensus size: 164
297600 GCCTTGGGCT
* * * * ** **
297610 TGCTGTAAATGATGTGCCTTGCAGCTGAGCGTAGTCAAACTCGAAGGTCCTTTGGAGATAGATAA
1 TGCTGCAAATGAAGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGT-CTTTGTTGGCAGATAA
** * *
297675 CCCTTCTAGCCTTGAGTTATATTGTAAATGATGTACCCTCGAAGCTGAGTGTAATCGAACTCCGG
65 CCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCCGG
* * *
297740 GGTCTTTGGCAGCTAGCCCTTCTCGACTTAAGCTA
130 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTA
** * * *
297775 TATTGCAAATGAAGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTCGTTGGCAAATAG
1 TGCTGCAAATGAAGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTT-GTTGGCAGATAA
* * * * *
297840 CCCTTCTTGCCTTGAGCTATGTTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
65 CCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCCGG
* * *
297905 GGTCTTTGGCAGATAATCCTTATCGACTTAAGCTA
130 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTA
* * * * *
297940 TGGTACAAATGATGTGCCGTT-GAGCTGAGCGTAGTCAAACTCAGAGGTCTTTTGTTGGCAGACA
1 TGCTGCAAATGAAGTGCC-TTGGAGCTGAGCGTAGTCAAACTCAAAGGTC-TTTGTTGGCAGATA
* * * * * * * * *
298004 ACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATG-CCTTGGAGCTAAGCGTAGTCGAACT-CG
64 ACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCCG
* * * *
298067 AAGGTCTTTGATGACAGATAACCCTTCTAGCCTTGAGTTA
129 -GGGTCTTTG--G-CAGATAACCCTTCTCGACTTAAGTTA
* * * * * * **
298107 TGCTGTAAATGATA-TGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTC--T-TTGGCAGATA
1 TGCTGCAAATGA-AGTG-CCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGTTGGCAGATA
* * * * * * * *
298168 ACCCTTCTCA-ACTTAAGTTATACTGCAAATGATGTGCCGTTG-AGCTGAGCGTAGTCGAACTCA
64 ACCCTTCT-AGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCC
** * * * * *
298231 AAGGTCTTTTGTTGGCATACAAACCTTCTAGACTTAAGTTG
128 GGGGTC---T-TTGGCAGATAACCCTTCTCGACTTAAGTTA
* * * * *
298272 TGCTGCAAAT-AATATGCCTTGGAGCTAAGCGTAGTCAAACTCGAAGGTCTTTGGTGACAGATAA
1 TGCTGCAAATGAA-GTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGTTGGCAGATAA
* * *
298336 CCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
65 CCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCCGG
* *
298401 GGTCTTTGGCAGGTAGCCCTTCTCGACTTAAGTTA
130 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTA
* * ** * * * * *
298436 TGCTGTAAATGATA-TGCCTTGGACCTGAGCGTAACCGAACTCGAAGGCCTTTG-TGGCAAATAG
1 TGCTGCAAATGA-AGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGTTGGCAGATAA
* * *
298499 CCCTTCTGGCCTTGAGCTAAGCTGCAAATGAT
65 CCCTTCTAGCCTTGAGTTATGCTGCAAATGAT
298531 TTGTTTAAAA
Statistics
Matches: 607, Mismatches: 123, Indels: 54
0.77 0.16 0.07
Matches are distributed among these distances:
163 37 0.06
164 185 0.30
165 251 0.41
166 10 0.02
167 74 0.12
168 50 0.08
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (164 bp):
TGCTGCAAATGAAGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGTTGGCAGATAAC
CCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCCGGG
GTCTTTGGCAGATAACCCTTCTCGACTTAAGTTA
Found at i:298184 original size:248 final size:248
Alignment explanation
Indices: 297778--298468 Score: 1053
Period size: 248 Copynumber: 2.8 Consensus size: 248
297768 TAAGCTATAT
* * * * * *
297778 TGCAAATGA-AGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTCGTTGGCAAATAGCC
1 TGCAAATGATA-TGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTT-GATGACAGATAACC
* * * ** *
297842 CTTCTTGCCTTGAGCTATGTTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
64 CTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
* * * * *
297907 TCTTTGGCAGATAATCCTTATCGACTTAAGCTATGGTACAAATGATGTGCCGTTGAGCTGAGCGT
129 TCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGT
* *
297972 AGTCAAACTCAGAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGC
194 AGTCAAACTCAAAGGTCTTTTGTTGGCAGACAAACCTTCTAGACTTAAGTTGTGC
298027 TGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGATGACAGATAACCCT
1 TGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGATGACAGATAACCCT
*
298092 TCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCAGGGGTC
66 TCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC
* *
298157 TTTGGCAGATAACCCTTCTCAACTTAAGTTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAG
131 TTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAG
* *
298222 TCGAACTCAAAGGTCTTTTGTTGGCATACAAACCTTCTAGACTTAAGTTGTGC
196 TCAAACTCAAAGGTCTTTTGTTGGCAGACAAACCTTCTAGACTTAAGTTGTGC
* * *
298275 TGCAAATAATATGCCTTGGAGCTAAGCGTAGTCAAACTCGAAGGTCTTTGGTGACAGATAACCCT
1 TGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGATGACAGATAACCCT
298340 TCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC
66 TCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC
* * * * *
298405 TTTGGCAGGTAGCCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCC-TTGGACCTGAGCGTA
131 TTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTA
298469 ACCGAACTCG
Statistics
Matches: 405, Mismatches: 35, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
247 2 0.00
248 357 0.88
249 45 0.11
250 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (248 bp):
TGCAAATGATATGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGATGACAGATAACCCT
TCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC
TTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAG
TCAAACTCAAAGGTCTTTTGTTGGCAGACAAACCTTCTAGACTTAAGTTGTGC
Found at i:303709 original size:17 final size:16
Alignment explanation
Indices: 303687--303722 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
303677 TAAAGGTTAG
*
303687 TAAAAATAAATAAATAA
1 TAAAAATAAACAAA-AA
303704 TAAAAATAAACAAAAA
1 TAAAAATAAACAAAAA
303720 TAA
1 TAA
303723 TACAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAAATAAACAAAAA
Found at i:303724 original size:13 final size:12
Alignment explanation
Indices: 303688--303748 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 12
303678 AAAGGTTAGT
303688 AAAAATAAATAAA
1 AAAAAT-AATAAA
303701 TAATAAA-AATAAA
1 -AA-AAATAATAAA
303714 CAAAAATAATACAA
1 -AAAAATAATA-AA
*
303728 GAAAATAATAAA
1 AAAAATAATAAA
303740 ATAAAATAA
1 A-AAAATAA
303749 AATGAATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 5 0.12
13 28 0.70
14 4 0.10
15 3 0.08
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (12 bp):
AAAAATAATAAA
Found at i:303758 original size:19 final size:18
Alignment explanation
Indices: 303729--303764 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
303719 ATAATACAAG
*
303729 AAAATAATAAAATAAAAT
1 AAAATAATAAAACAAAAT
303747 AAAATGAATAAAACAAAA
1 AAAAT-AATAAAACAAAA
303765 AGTAAAGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAATAATAAAACAAAAT
Found at i:304599 original size:16 final size:17
Alignment explanation
Indices: 304566--304599 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
304556 TGTTGATGAT
*
304566 TCGTGTTTTGCTTGTGA
1 TCGTGTTTGGCTTGTGA
304583 TCGTGTTTGGCTT-TGA
1 TCGTGTTTGGCTTGTGA
304599 T
1 T
304600 GATGTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.12, G:0.29, T:0.53
Consensus pattern (17 bp):
TCGTGTTTGGCTTGTGA
Found at i:305070 original size:25 final size:25
Alignment explanation
Indices: 305028--305075 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
305018 TAATATATTA
* *
305028 TATATAAAAAATATTTTCCAAAACC
1 TATATAAAAAATAATTTCAAAAACC
* *
305053 TATATAATATATAATTTCAAAAA
1 TATATAAAAAATAATTTCAAAAA
305076 TATTTTAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.35
Consensus pattern (25 bp):
TATATAAAAAATAATTTCAAAAACC
Found at i:305111 original size:36 final size:35
Alignment explanation
Indices: 305007--305129 Score: 113
Period size: 37 Copynumber: 3.3 Consensus size: 35
304997 GAAAAGGGGA
*
305007 AAAATTAATAATAATATATTATATATAAAAAATATTTTCC
1 AAAATT-AT-ATAATATA-TA-ATTTAAAAAATATTTT-C
* *
305047 AAAACCTATATAATATATAATTTCAAAAATATTTT-
1 AAAA-TTATATAATATATAATTTAAAAAATATTTTC
* * *
305082 AAAATTATATATTATATACTTTTTAAAAAATGTTTTC
1 AAAATTATATAATATATA--ATTTAAAAAATATTTTC
305119 AAAATTATATA
1 AAAATTATATA
305130 GTTTTCAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
34 12 0.17
35 4 0.06
36 13 0.18
37 25 0.35
38 2 0.03
39 8 0.11
40 6 0.08
41 1 0.01
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (35 bp):
AAAATTATATAATATATAATTTAAAAAATATTTTC
Found at i:305139 original size:29 final size:32
Alignment explanation
Indices: 305092--305160 Score: 90
Period size: 30 Copynumber: 2.2 Consensus size: 32
305082 AAAATTATAT
* *
305092 ATTATATACTTTTTAAAAAATG-TTTT-CAAA
1 ATTATATACGTTTTAAAAAATGTTTTTAAAAA
*
305122 ATTATATA-GTTTTCAAAAATGTTTTTAAAAA
1 ATTATATACGTTTTAAAAAATGTTTTTAAAAA
305153 ATTATATA
1 ATTATATA
305161 TTATATATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 11 0.32
30 12 0.35
31 11 0.32
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (32 bp):
ATTATATACGTTTTAAAAAATGTTTTTAAAAA
Found at i:305174 original size:29 final size:28
Alignment explanation
Indices: 305142--305223 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
305132 TTTCAAAAAT
305142 GTTTTTAAAAAATTATATATTATATATAA
1 GTTTTTAAAAAA-TATATATTATATATAA
* * * *
305171 GTTTTCAAAAAA-ATGTTTTATATATAT
1 GTTTTTAAAAAATATATATTATATATAA
*
305198 GTTTTT-AAAACTATATATTATATATA
1 GTTTTTAAAAAATATATATTATATATA
305224 CTTTCAAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.09
27 29 0.66
29 11 0.25
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (28 bp):
GTTTTTAAAAAATATATATTATATATAA
Found at i:305244 original size:36 final size:36
Alignment explanation
Indices: 305196--305438 Score: 193
Period size: 36 Copynumber: 6.9 Consensus size: 36
305186 TTTTATATAT
*
305196 ATGTTTTTAAAACTATATATTATATATACTTTCAAA
1 ATGTTTTAAAAACTATATATTATATATACTTTCAAA
* **
305232 ATGTTTTAAAAACTATATAATATATAAATGTTTTCAAAA
1 ATGTTTTAAAAACTATAT-AT-TATATATACTTTC-AAA
* *
305271 ATGTTTT----A-TATA-A-TATATGT--TTTTAAA
1 ATGTTTTAAAAACTATATATTATATATACTTTCAAA
305298 ATGTTTTAAAAACTATATATTATATATACTTTCAAA
1 ATGTTTTAAAAACTATATATTATATATACTTTCAAA
* **
305334 ATGTTTTAAAAACTATATAATATATAAATGTTTTCAAA
1 ATGTTTTAAAAACTATAT-AT-TATATATACTTTCAAA
* * * * * * *
305372 ATATTTTTCAAAACCATATACTATATAGATTTTAAAA
1 AT-GTTTTAAAAACTATATATTATATATACTTTCAAA
*
305409 ACGTTTTCAAAAACTATATA--ATATATACTT
1 ATGTTTT-AAAAACTATATATTATATATACTT
305439 ATTTTCAAAA
Statistics
Matches: 165, Mismatches: 26, Indels: 33
0.74 0.12 0.15
Matches are distributed among these distances:
27 10 0.06
28 3 0.02
30 5 0.03
31 1 0.01
32 5 0.03
33 1 0.01
34 10 0.06
35 9 0.05
36 45 0.27
37 27 0.16
38 26 0.16
39 23 0.14
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (36 bp):
ATGTTTTAAAAACTATATATTATATATACTTTCAAA
Found at i:305281 original size:27 final size:27
Alignment explanation
Indices: 305230--305305 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
305220 TATACTTTCA
* * *
305230 AAATGTTTTAAAAACTATATAATAT-AT
1 AAATGTTTTAAAAA-TGTTTTATATAAT
305257 AAATGTTTTCAAAAATGTTTTATATAAT
1 AAATGTTTT-AAAAATGTTTTATATAAT
* *
305285 ATATGTTTTTAAAATGTTTTA
1 AAATGTTTTAAAAATGTTTTA
305306 AAAACTATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 27 0.64
28 15 0.36
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (27 bp):
AAATGTTTTAAAAATGTTTTATATAAT
Found at i:305314 original size:27 final size:28
Alignment explanation
Indices: 305259--305315 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
305249 TAATATATAA
*
305259 ATGTTTTCAAAAATGTTTTATATAATAT
1 ATGTTTTCAAAAATGTTTTATAAAATAT
*
305287 ATGTTTT-TAAAATGTTTTA-AAAACTAT
1 ATGTTTTCAAAAATGTTTTATAAAA-TAT
305314 AT
1 AT
305316 ATTATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.12
27 16 0.62
28 7 0.27
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (28 bp):
ATGTTTTCAAAAATGTTTTATAAAATAT
Found at i:305324 original size:75 final size:75
Alignment explanation
Indices: 305245--305435 Score: 199
Period size: 75 Copynumber: 2.5 Consensus size: 75
305235 TTTTAAAAAC
* * * * * *
305245 TATATAATATATAAATGTTTTCAAAAA-TGTTTTATATAATATATGTTTTTAAAAT-GTTTTAAA
1 TATATAATTTA-AAATGTTTTCAAAAACTATATAATAT-ATAAATGTTTTCAAAATAGTTTTAAA
* *
305308 AACTATATATTA
64 AACCATATACTA
* * *
305320 TATATACTTTCAAAATGTTTT-AAAAACTATATAATATATAAATGTTTTCAAAATATTTTTCAAA
1 TATATAATTT-AAAATGTTTTCAAAAACTATATAATATATAAATGTTTTCAAAATAGTTTTAAAA
305384 ACCATATACTA
65 ACCATATACTA
* * *
305395 TATAGATTTTAAAAACGTTTTCAAAAACTATATAATATATA
1 TATATAATTT-AAAATGTTTTCAAAAACTATATAATATATA
305436 CTTATTTTCA
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
74 20 0.21
75 57 0.59
76 20 0.21
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (75 bp):
TATATAATTTAAAATGTTTTCAAAAACTATATAATATATAAATGTTTTCAAAATAGTTTTAAAAA
CCATATACTA
Found at i:305480 original size:76 final size:75
Alignment explanation
Indices: 305301--305516 Score: 197
Period size: 75 Copynumber: 2.8 Consensus size: 75
305291 TTTTAAAATG
* * * * * *
305301 TTTTAAAAACTATATATTATATATACTTTCAAAATGTTTT-AAAAACTATATAATATATAAATGT
1 TTTTCAAAAC-ATATACTATATATATTTTCAAAACGTTTTCAAAAACTATATAATATATACATAT
305365 TTTCAAAATAT
65 TTTCAAAATAT
* * *
305376 TTTTCAAAACCATATACTATATAGATTTTAAAAACGTTTTCAAAAACTATATAATATATACTTAT
1 TTTTCAAAA-CATATACTATATATATTTTCAAAACGTTTTCAAAAACTATATAATATATACATAT
*
305441 TTTCAAAAATCGT
65 TTTC-AAAAT-AT
* * * *
305454 TTTTCCGAAAA-TTATAC-AT-TATATTTTGTCAAAACATTTTCAAAAACTGTATTACTATATAC
1 TTTT-C-AAAACATATACTATATATA-TTT-TCAAAACGTTTTCAAAAACTATA-TAATATATAC
305516 A
61 A
305517 CACATATATA
Statistics
Matches: 115, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
75 32 0.28
76 29 0.25
77 10 0.09
78 30 0.26
79 10 0.09
80 4 0.03
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.42
Consensus pattern (75 bp):
TTTTCAAAACATATACTATATATATTTTCAAAACGTTTTCAAAAACTATATAATATATACATATT
TTCAAAATAT
Found at i:306988 original size:18 final size:18
Alignment explanation
Indices: 306957--306991 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
306947 ATATAAAAAA
306957 ATAAAATTACAATATATT
1 ATAAAATTACAATATATT
* *
306975 ATAAACTTAGAATATAT
1 ATAAAATTACAATATAT
306992 GGGTCAGGCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (18 bp):
ATAAAATTACAATATATT
Found at i:307254 original size:36 final size:36
Alignment explanation
Indices: 307203--307272 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
307193 GTTGATCATC
307203 TCACGGAACAACAAATGCTCAAAACATTAAGAGATT
1 TCACGGAACAACAAATGCTCAAAACATTAAGAGATT
* *
307239 TCACGGGACAGCAAATGCTCAAAACATTAAGAGA
1 TCACGGAACAACAAATGCTCAAAACATTAAGAGA
307273 AAGAAAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.17
Consensus pattern (36 bp):
TCACGGAACAACAAATGCTCAAAACATTAAGAGATT
Found at i:307404 original size:16 final size:15
Alignment explanation
Indices: 307379--307412 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
307369 GTTTATATAT
*
307379 TATGTTAATTAAATCA
1 TATGTAAATTAAAT-A
307395 TATGTAAATTAAATA
1 TATGTAAATTAAATA
307410 TAT
1 TAT
307413 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (15 bp):
TATGTAAATTAAATA
Found at i:307763 original size:26 final size:24
Alignment explanation
Indices: 307708--307765 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
307698 TAAATTATAT
* *
307708 TAAAAATATATCATCAGTAAATTG
1 TAAAAATATATCATCAATAAATTA
*
307732 TCAAAAACTATATCATCAATAAGTTAA
1 T-AAAAA-TATATCATCAATAAATT-A
307759 TAAAAAT
1 TAAAAAT
307766 TCTAAAAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.04
25 6 0.21
26 20 0.71
27 1 0.04
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.31
Consensus pattern (24 bp):
TAAAAATATATCATCAATAAATTA
Found at i:309034 original size:30 final size:30
Alignment explanation
Indices: 308998--309055 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
308988 ATTGACATTG
*
308998 ACTTCACTTTGCATACATTAATTCTCTTTC
1 ACTTCACTTTGCACACATTAATTCTCTTTC
* *
309028 ACTTCACTTTGCACACTTTCATTCTCTT
1 ACTTCACTTTGCACACATTAATTCTCTT
309056 CCAATGGCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.03, T:0.47
Consensus pattern (30 bp):
ACTTCACTTTGCACACATTAATTCTCTTTC
Found at i:312532 original size:15 final size:15
Alignment explanation
Indices: 312508--312549 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
312498 TAAAAACGTC
312508 TTTTAA-AAAAA-CAA
1 TTTTAAGAAAAATC-A
312522 TTTTAAGAAAAATCA
1 TTTTAAGAAAAATCA
312537 TTTTAAGACAAAA
1 TTTTAAGA-AAAA
312550 AGCTAGTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.24
15 14 0.56
16 5 0.20
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (15 bp):
TTTTAAGAAAAATCA
Found at i:312893 original size:15 final size:16
Alignment explanation
Indices: 312873--312902 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
312863 AAGATAAGAT
312873 AAAATAAAA-TGAAAC
1 AAAATAAAAGTGAAAC
312888 AAAATAAAAGTGAAA
1 AAAATAAAAGTGAAA
312903 AACAGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.03, G:0.10, T:0.13
Consensus pattern (16 bp):
AAAATAAAAGTGAAAC
Found at i:314833 original size:17 final size:17
Alignment explanation
Indices: 314791--314838 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
314781 TGTAAAAGAA
314791 AATATAATTAAT-A-AT
1 AATATAATTAATAATAT
*
314806 AATA-AAATAATAATAT
1 AATATAATTAATAATAT
314822 AATATAATTAATAATAT
1 AATATAATTAATAATAT
314839 TTTTGAAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 6 0.21
15 5 0.18
16 6 0.21
17 11 0.39
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATAATTAATAATAT
Found at i:315419 original size:126 final size:127
Alignment explanation
Indices: 315135--315575 Score: 446
Period size: 126 Copynumber: 3.5 Consensus size: 127
315125 ATGATAAGTC
* * * * * * * *
315135 TTGGTTATCTAAGATTGAGACGGCTCCTACGTGATGAGTAGATCTAGTC-GAGTGATGACACGGT
1 TTGGTTATCTGA-ATTGACACAGCTCCTACATAATGAGGAGATCTGGTCAG-GTGATGACACAGT
* * * * * * * **
315199 TCCTACGTGATAAGGACGGCAGGCTATCTAAGGGTGATAACACAGTTTCTACGTAATGAGGACAA
64 TCCTACGTGATGAGGATGGTAGGCCA-CTAAGGGTGATAACACGGTTCCTACGTGATGAGGACTG
** * *
315264 TTGGTTATCTGGGTTAACACAGCTCCTACATAATGAGGAGATTTGGTCAGGTGATGACACAGTTC
1 TTGGTTATCTGAATTGACACAGCTCCTACATAATGAGGAGATCTGGTCAGGTGATGACACAGTTC
* * * * *
315329 CTACGTGATGAGGATGGTAGGCCA-TATGGGTGATAACATGGTTCCTACATGATAAAGACTG
66 CTACGTGATGAGGATGGTAGGCCACTAAGGGTGATAACACGGTTCCTACGTGATGAGGACTG
* *
315390 TTGGTTATCTGAATTGACACAGCTCCTACATAATGAAGAGATCTGGTCAGGTGATGACACTGTTC
1 TTGGTTATCTGAATTGACACAGCTCCTACATAATGAGGAGATCTGGTCAGGTGATGACACAGTTC
* * * *
315455 AT-CTGTTCATGA-G-T-CTTGGCCATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGA-TG
66 CTAC-G-TGATGAGGATGGTAGGCCA-CTAAGGGTGATAACACGGTTCCTACGTGATGAGGACT-
315515 G
127 G
* * * *
315516 CTGGTTATCTGAGTTGACACAACTCCTATATAATGAGGAGATCTGGTCAGGTGATGACAC
1 TTGGTTATCTGAATTGACACAGCTCCTACATAATGAGGAGATCTGGTCAGGTGATGACAC
315576 TGCTCATCTG
Statistics
Matches: 260, Mismatches: 46, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
124 6 0.02
125 3 0.01
126 174 0.67
127 5 0.02
128 61 0.23
129 11 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (127 bp):
TTGGTTATCTGAATTGACACAGCTCCTACATAATGAGGAGATCTGGTCAGGTGATGACACAGTTC
CTACGTGATGAGGATGGTAGGCCACTAAGGGTGATAACACGGTTCCTACGTGATGAGGACTG
Found at i:315583 original size:126 final size:125
Alignment explanation
Indices: 315224--315609 Score: 465
Period size: 126 Copynumber: 3.1 Consensus size: 125
315214 ACGGCAGGCT
* * * ** * *
315224 ATCTAAGGGTGATAACACAGTTTCTACGTAATGAGGACAATTGGTTATCTGGGTTAACACAGCTC
1 ATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGA-TGTTGGTTATCTGAGTTGACACAGCTC
* * * * * *
315289 CTACATAATGAGGAGATTTGGTCAGGTGATGACACAGTTCCTAC-G-TGATGAGGATGGTAGGCC
65 CTACATAATGAGGAGATCTGGTCAGGTGATGACACTGTTCAT-CTGTTCATGA-G-T-CTTGGCC
* * * * * *
315352 A--TATGGGTGATAACATGGTTCCTACATGATAAAGACTGTTGGTTATCTGAATTGACACAGCTC
1 ATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGA-TGTTGGTTATCTGAGTTGACACAGCTC
*
315415 CTACATAATGAAGAGATCTGGTCAGGTGATGACACTGTTCATCTGTTCATGAGTCTTGGCC
65 CTACATAATGAGGAGATCTGGTCAGGTGATGACACTGTTCATCTGTTCATGAGTCTTGGCC
* *
315476 ATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGGCTGGTTATCTGAGTTGACACAACTC
1 ATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGAT-GTTGGTTATCTGAGTTGACACAGCTC
* *
315541 CTATATAATGAGGAGATCTGGTCAGGTGATGACACTGCTCATCTGTTCATGAGTCTTGGCC
65 CTACATAATGAGGAGATCTGGTCAGGTGATGACACTGTTCATCTGTTCATGAGTCTTGGCC
315602 ATCTAAGG
1 ATCTAAGG
315610 AATTTTGATT
Statistics
Matches: 222, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
124 6 0.03
125 3 0.01
126 207 0.93
127 5 0.02
128 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (125 bp):
ATCTAAGGGTGATAACACGGTTCCTACGTGATGAGGATGTTGGTTATCTGAGTTGACACAGCTCC
TACATAATGAGGAGATCTGGTCAGGTGATGACACTGTTCATCTGTTCATGAGTCTTGGCC
Found at i:315754 original size:37 final size:38
Alignment explanation
Indices: 315712--315785 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 38
315702 AAAGATTTTT
*
315712 TTGTCTCAAATGAGACAA-AATTTGTTTTGAAAGAAAA
1 TTGTCTCAAATGAGACAACAATTTGTTTCGAAAGAAAA
* * *
315749 TTGTCTCAAGTGAGACAACATTTTGTTTCGAGAGAAA
1 TTGTCTCAAATGAGACAACAATTTGTTTCGAAAGAAA
315786 CAACATCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (38 bp):
TTGTCTCAAATGAGACAACAATTTGTTTCGAAAGAAAA
Found at i:319985 original size:6 final size:6
Alignment explanation
Indices: 319962--319999 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
319952 TTCTTGAATG
*
319962 AATGC- AATGCA GAATGCA AATGCA AATGCA AAAGCA AA
1 AATGCA AATGCA -AATGCA AATGCA AATGCA AATGCA AA
320000 AGGTATAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
5 5 0.17
6 19 0.63
7 6 0.20
ACGTcount: A:0.53, C:0.16, G:0.18, T:0.13
Consensus pattern (6 bp):
AATGCA
Found at i:321428 original size:3 final size:3
Alignment explanation
Indices: 321415--321457 Score: 61
Period size: 3 Copynumber: 14.0 Consensus size: 3
321405 AAAAGAAAAT
321415 ATA ATTA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATTA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
321458 TTTTTCAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:329141 original size:3 final size:3
Alignment explanation
Indices: 329126--329182 Score: 78
Period size: 3 Copynumber: 19.0 Consensus size: 3
329116 TTTCATCTTT
* * * *
329126 TTA TTA ATA TTA TTA TTG TTA TTA TTA TTA TTA TTA TAA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
329174 TTA TTA TTA
1 TTA TTA TTA
329183 AATAAAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:330707 original size:12 final size:11
Alignment explanation
Indices: 330686--330725 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
330676 TTTTTCAATA
330686 TATTTAAATTAT
1 TATTT-AATTAT
330698 TACTTTAATTAT
1 TA-TTTAATTAT
*
330710 TATTTTATTAT
1 TATTTAATTAT
330721 TATTT
1 TATTT
330726 TCGTATTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 13 0.50
12 10 0.38
13 3 0.12
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTAATTAT
Found at i:332466 original size:36 final size:36
Alignment explanation
Indices: 332415--332486 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
332405 GAGCTATACA
*
332415 CACAAAGATCATGTTATATTAATACCAAAAGTATTC
1 CACAAAGATCATGTTAGATTAATACCAAAAGTATTC
* *
332451 CACAAAGATCCTGTTAGATTGATACCAAAAGTATTC
1 CACAAAGATCATGTTAGATTAATACCAAAAGTATTC
332487 TACGACAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (36 bp):
CACAAAGATCATGTTAGATTAATACCAAAAGTATTC
Found at i:333015 original size:43 final size:44
Alignment explanation
Indices: 332940--333026 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
332930 TGGCTTTAGA
* * *
332940 GAAGTTAGGAGGGAAAGTTATCCCCTATATGT-AAAGTTTTGTT
1 GAAGTTAGGACGGAAAGATATCCCCTACATGTAAAAGTTTTGTT
* * *
332983 GAAGTTAGGACTGAAAGATGTCCTCTACATGTAAAAGTTTTGTT
1 GAAGTTAGGACGGAAAGATATCCCCTACATGTAAAAGTTTTGTT
333027 TGATGCACGG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 26 0.70
44 11 0.30
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.34
Consensus pattern (44 bp):
GAAGTTAGGACGGAAAGATATCCCCTACATGTAAAAGTTTTGTT
Found at i:333231 original size:27 final size:26
Alignment explanation
Indices: 333201--333266 Score: 96
Period size: 27 Copynumber: 2.5 Consensus size: 26
333191 CATTCATATA
*
333201 TTTACATTTGCATTTGCATTTTGCATT
1 TTTACATTTGCATTTACATTTT-CATT
*
333228 TTTACATTTGTATTTACATTTTCATT
1 TTTACATTTGCATTTACATTTTCATT
*
333254 TTTGCATTTGCAT
1 TTTACATTTGCAT
333267 CTTTGCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
26 15 0.43
27 20 0.57
ACGTcount: A:0.20, C:0.14, G:0.09, T:0.58
Consensus pattern (26 bp):
TTTACATTTGCATTTACATTTTCATT
Found at i:333271 original size:14 final size:14
Alignment explanation
Indices: 333205--333274 Score: 58
Period size: 14 Copynumber: 5.2 Consensus size: 14
333195 CATATATTTA
333205 CATTTGCA--TTTG
1 CATTTGCATTTTTG
*
333217 CATTTTGCATTTTTA
1 CA-TTTGCATTTTTG
* *
333232 CATTTG--TATTTA
1 CATTTGCATTTTTG
*
333244 CATTTTCATTTTTG
1 CATTTGCATTTTTG
*
333258 CATTTGCATCTTTG
1 CATTTGCATTTTTG
333272 CAT
1 CAT
333275 AATTACATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
12 12 0.26
13 6 0.13
14 23 0.50
15 5 0.11
ACGTcount: A:0.19, C:0.16, G:0.10, T:0.56
Consensus pattern (14 bp):
CATTTGCATTTTTG
Found at i:337240 original size:12 final size:12
Alignment explanation
Indices: 337209--337241 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
337199 AACATAAGAG
*
337209 GCAGTCACTGTA
1 GCAGTCATTGTA
337221 GCAGTCATTGTA
1 GCAGTCATTGTA
337233 GCAGTCATT
1 GCAGTCATT
337242 ACAAGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (12 bp):
GCAGTCATTGTA
Found at i:340274 original size:54 final size:54
Alignment explanation
Indices: 340215--340352 Score: 186
Period size: 54 Copynumber: 2.6 Consensus size: 54
340205 CATAGAAAAT
*
340215 GATGAATGTGTTGTCAAATGCTTTACGAACATCTGGCCAGAAGCCACAATAAAG
1 GATGAATGTGTTGTCAAATGCTTTACGAACATCTGGCCAGAAGCCACAAGAAAG
* * * * **
340269 GATGAATGTGTTATCAAAAGCTTTACGAAAATCTGGGCAGAAGCCATGAGAAAG
1 GATGAATGTGTTGTCAAATGCTTTACGAACATCTGGCCAGAAGCCACAAGAAAG
* * *
340323 GATGAATGTATTGTCACATGTTTTACGAAC
1 GATGAATGTGTTGTCAAATGCTTTACGAAC
340353 TAGTGATTAT
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (54 bp):
GATGAATGTGTTGTCAAATGCTTTACGAACATCTGGCCAGAAGCCACAAGAAAG
Found at i:340745 original size:22 final size:22
Alignment explanation
Indices: 340720--340774 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
340710 ATTTACATTC
* *
340720 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAAATTATCTT
340742 TTCAAAGATGATAAATTATCTT
1 TTCAAAGATGATAAATTATCTT
*
340764 TTTAAAGATGA
1 TTCAAAGATGA
340775 AAGCCTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAAATTATCTT
Found at i:341590 original size:45 final size:45
Alignment explanation
Indices: 341521--341669 Score: 226
Period size: 45 Copynumber: 3.3 Consensus size: 45
341511 GGGAGCTTTT
* *
341521 TGATATTTTCAAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
341566 TGATGTTTACAAAGCCTTCGGGTCATCTGTAAGCCCTTCAATGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
341611 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
341656 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
341670 AGCCTTTGGG
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:341691 original size:121 final size:121
Alignment explanation
Indices: 341566--341789 Score: 394
Period size: 121 Copynumber: 1.9 Consensus size: 121
341556 CTTCAGTGCA
*
341566 TGATGTTTACAAAGCCTTCGGGTCATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCG
1 TGATGTTTACAAAACCTTCGGGTCATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCG
*
341631 GGTCATCTGTAAGTCCTACAGTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTT
66 GGTCATCTGTAAGCCCTACAGTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTT
* *
341687 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
1 TGATGTTTACAAAACCTTCGGGTCATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCG
* *
341752 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
66 GGTCATCTGTAAGCCCTACAGTGCAGGATGTTTTCAAA
341790 GCCTTCGGGT
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 97 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (121 bp):
TGATGTTTACAAAACCTTCGGGTCATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCG
GGTCATCTGTAAGCCCTACAGTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTT
Found at i:341698 original size:166 final size:166
Alignment explanation
Indices: 341423--342167 Score: 844
Period size: 166 Copynumber: 4.5 Consensus size: 166
341413 CTATTTCCCA
**
341423 CATCTGTAAAACCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTAG-AAGACCTACAGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCT-GTAAGACCTACAGT
* * * *
341487 ACAGGATGTTTTAAAAAAACCTTCGGGAGCTTTTTGATATTTTCAAAACCTCCGGGTCATCTGTA
65 GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACCTCCGGGTCATCTGTA
*
341552 AGCCCTTCAGTGCATGATGTTTACAAAGCCTTCGGGT
130 AGCCCTTCAGTGCATGATGTTTACAAAACCTTCGGGT
* *
341589 CATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTACAGTG
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTG
* *
341654 CAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAAAACCTTCGGGTCATCTGTAA
66 CAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACCTCCGGGTCATCTGTAA
*
341719 GCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
131 GCCCTTCAGTGCATGATGTTTACAAAACCTTCGGGT
* * *
341755 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTG
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTG
* * * * * * * * * * * * ** *
341820 CATGATATTTTC-AAAA-CCTTTGGG-TC-ATCTGTAAG--TCCTACA-GTGCAGGATGTTTTCA
66 CAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG-ATGTTTTCAAAACCT-CCGG--GTCATCT
** *** * * *
341878 AAAAG-CCTTCGGGAGCTTTTTGATATTTTCAAAGCCTTCGGGT
127 GTAAGCCCTTC---AG-TGCATGATGTTTACAAAACCTTCGGGT
* * * **
341921 CATCTGTAATCCCTTCAGTGCATGATGTTATCAAAACGTTCGGGTCATCCATAAGACCTACAGTG
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTG
* * *
341986 CAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTTATGTTATCAAAACCTTCGGGTCATCTGTAA
66 CAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACCTCCGGGTCATCTGTAA
**
342051 GCCCTTCAGTGCATGATG-TTACCAAAACCTTTAGGT
131 GCCCTTCAGTGCATGATGTTTA-CAAAACCTTCGGGT
* * * * *
342087 CATCTGTAAGCCCTTCAATGCATGATGTTATGAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTG
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTG
*
342152 CATGATGTTTTCAAAA
66 CAGGATGTTTTCAAAA
342168 CATTCGGGTC
Statistics
Matches: 478, Mismatches: 83, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
160 1 0.00
161 6 0.01
162 8 0.02
163 10 0.02
164 8 0.02
165 9 0.02
166 400 0.84
167 6 0.01
168 7 0.01
169 10 0.02
170 7 0.01
171 5 0.01
172 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (166 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTG
CAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACCTCCGGGTCATCTGTAA
GCCCTTCAGTGCATGATGTTTACAAAACCTTCGGGT
Found at i:341738 original size:45 final size:45
Alignment explanation
Indices: 341687--342302 Score: 386
Period size: 45 Copynumber: 13.3 Consensus size: 45
341677 GGGAGCTTTT
341687 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
341732 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
341777 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * * *
341822 TGATATTTTCAAAACCTTTGGGTCATCTGTAAGTCCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * * * * **** ** *
341867 GGATGTTTTCAAAAAGCCTTCGGGAGC-TTTTTGATATTTTCAAAGCCT
1 TGATGTTTTC-AAAA-CCTTCGGG-TCATCTGTAAGCCCTTCAGTG-CA
* ** * * * * **** *
341915 TCG-GGTCATCTGT-AATCCCTTC-AGTGCATGATGTTATCAAAAC-GTTC-
1 T-GATGT--T-T-TCAAAACCTTCGGGT-CAT-CTGTAAGCCCTTCAGTGCA
* * * ** *** ***
341962 -G-GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAG-CCTTCGGGAGCTTTT
1 TGATGT-TTTCA-AA-ACCT----T-C-GG--GTCATCTGTAAGCCCTTC---AG-TGCA
* *
342019 TTATGTTATCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
** ** *
342064 TGATGTTACCAAAACCTTTAGGTCATCTGTAAGCCCTTCAATGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
342109 TGATGTTATGAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
342154 TGATGTTTTCAAAACATTCGGGTCATCTATAATCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
342199 TGATGTTTTCAAAACCTTCAGGTCATCTATAAGCCCTTCAGTTCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * * *
342244 TGATGTTTTTTAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
1 TGATG-TTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
342290 GGATGTTTTCAAA
1 TGATGTTTTCAAA
342303 TGAGATTTTA
Statistics
Matches: 439, Mismatches: 98, Indels: 68
0.73 0.16 0.11
Matches are distributed among these distances:
43 2 0.00
44 1 0.00
45 318 0.72
46 43 0.10
47 15 0.03
48 14 0.03
49 13 0.03
50 11 0.03
51 3 0.01
52 3 0.01
53 1 0.00
54 2 0.00
55 1 0.00
56 6 0.01
57 2 0.00
58 2 0.00
59 2 0.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:341792 original size:211 final size:211
Alignment explanation
Indices: 341521--342302 Score: 934
Period size: 211 Copynumber: 3.7 Consensus size: 211
341511 GGGAGCTTTT
* * * *
341521 TGATATTTTCAAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTACAAAGCCTTCG
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
*
341586 GGTCATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTACA
341651 GTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAAAACCTTCGGGTCATCTG
131 GTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAAAACCTTCGGGTCATCTG
341716 TAAGCCCTTCAGTGCA
196 TAAGCCCTTCAGTGCA
*
341732 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
* *
341797 GGTCATCTGTAAGCCCTTCAGTGCATGATATTTTCAAAACCTTTGGGTCATCTGTAAGTCCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTACA
* * *
341862 GTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTTCAAAGCCTTCGGGTCATCTG
131 GTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAAAACCTTCGGGTCATCTG
*
341927 TAATCCCTTCAGTGCA
196 TAAGCCCTTCAGTGCA
* * * * * *
341943 TGATGTTATCAAAACGTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTC--AAAGCCTT
* * * *
342008 CGGG--AGCT-T------TT---T---T-ATGTTATCAAAACCTTCGGGTCATCTGTAAGCCCTT
64 CGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTA
* * * * * *
342057 CAGTGCATGATG-TTACCAAAA-CCTTTAGGTCATCTGTAAGCCCTTCAATGCATGATGTTATGA
129 CAGTGCAGGATGTTTTCAAAAAGCCTTT-GG------G--AG--CTT---T--TTGATGTTTTCA
342120 AAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
178 AAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * * *
342154 TGATGTTTTCAAAACATTCGGGTCATCTATAATCCCTTCAGTGCATGATGTTTTCAAAACCTTCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
* * * * *
342219 GGTCATCTATAAGCCCTTCAGTTCATGATGTTTTTTAAAGCCTTCGGGTCATCTGTAAGACCTAC
66 GGTCATCTGTAAGCCCTTCAGTGCATGATG-TTTTCAAAACCTTCGGGTCATCTGTAAGTCCTAC
342284 AGTGCAGGATGTTTTCAAA
130 AGTGCAGGATGTTTTCAAA
342303 TGAGATTTTA
Statistics
Matches: 484, Mismatches: 51, Indels: 56
0.82 0.09 0.09
Matches are distributed among these distances:
195 4 0.01
196 9 0.02
197 42 0.09
198 1 0.00
201 1 0.00
202 1 0.00
204 4 0.01
206 3 0.01
209 11 0.02
210 1 0.00
211 343 0.71
212 1 0.00
213 12 0.02
218 2 0.00
221 1 0.00
224 1 0.00
225 3 0.01
226 39 0.08
227 5 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (211 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTACA
GTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAAAACCTTCGGGTCATCTG
TAAGCCCTTCAGTGCA
Found at i:341996 original size:121 final size:121
Alignment explanation
Indices: 341777--342090 Score: 493
Period size: 121 Copynumber: 2.6 Consensus size: 121
341767 CTTCAGTGCA
* * *
341777 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATATTTTCAAAACCTTTG
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCG
** *
341842 GGTCATCTGTAAGTCCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
66 GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
* * *
341898 TGATATTTTCAAAGCCTTCGGGTCATCTGTAATCCCTTCAGTGCATGATGTTATCAAAACGTTCG
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCG
341963 GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
66 GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
* * * * **
342019 TTATGTTATCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTACCAAAACCTTTA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCG
342084 GGTCATC
66 GGTCATC
342091 TGTAAGCCCT
Statistics
Matches: 175, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
121 175 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (121 bp):
TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCG
GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
Found at i:342114 original size:121 final size:120
Alignment explanation
Indices: 341779--342130 Score: 463
Period size: 121 Copynumber: 2.9 Consensus size: 120
341769 TCAGTGCATG
* * * **
341779 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATATTTTCAAAACCTTTGGG
1 ATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCAGG
* * *
341844 TCATCTGTAAGTCCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
66 TCATCTATAAGCCCTACAGTGCAGGATGTTTT-AAAAAGCCTTCGGGAGCTTTTTT
* * * * *
341900 ATATTTTCAAAGCCTTCGGGTCATCTGTAATCCCTTCAGTGCATGATGTTATCAAAACGTTCGGG
1 ATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCAGG
* *
341965 TCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTT
66 TCATCTATAAGCCCTACAGTGCAGGATGTTTT-AAAAAGCCTTCGGGAGCTTTTTT
* * *
342021 ATGTTATCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTACCAAAACCTTTAGG
1 ATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCAGG
* * * * * *
342086 TCATCTGTAAGCCCTTCAATGCATGATGTTATGAAAA-CCTTCGGG
66 TCATCTATAAGCCCTACAGTGCAGGATGTTTTAAAAAGCCTTCGGG
342131 TCATCTGTAA
Statistics
Matches: 205, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
119 8 0.04
120 4 0.02
121 193 0.94
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (120 bp):
ATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAACCTTCAGG
TCATCTATAAGCCCTACAGTGCAGGATGTTTTAAAAAGCCTTCGGGAGCTTTTTT
Done.