Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008758.1 Hibiscus syriacus cultivar Beakdansim tig00111850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120474

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1346--1385
11
3.6
11
83
9
55
42
0
0
57
0.98
1394--1452
23
2.7
23
94
5
104
45
11
3
38
1.58
2518--2577
16
3.3
19
75
17
65
25
0
1
73
0.93
2838--2866
15
1.9
15
100
0
58
75
0
3
20
0.94
26279--26315
2
19.5
2
89
10
60
54
0
0
45
1.00
26743--26782
20
1.9
22
90
10
66
37
7
2
52
1.43
27766--27821
21
2.7
21
97
0
103
19
8
30
41
1.82
27937--28001
23
2.6
27
78
16
75
66
3
0
30
1.07
28202--28249
24
1.9
24
87
8
69
41
0
0
58
0.98
28202--28249
13
3.9
12
76
13
53
41
0
0
58
0.98
29356--29401
24
1.9
24
86
8
67
52
6
2
39
1.40
29379--29440
32
2.0
31
83
3
79
48
9
3
38
1.52
43798--43841
19
2.3
19
100
0
88
50
13
0
36
1.42
48152--48180
3
9.7
3
100
0
58
34
65
0
0
0.93
48853--49074
116
1.9
115
84
6
297
38
26
11
22
1.89
54510--54645
45
3.0
46
92
2
229
36
13
7
42
1.72
59004--59101
48
2.0
50
92
4
164
42
11
21
24
1.85
61165--61204
21
1.9
21
89
0
62
40
27
10
22
1.86
69770--69838
36
1.9
36
100
0
138
39
10
5
44
1.62
74916--74943
6
4.7
6
100
0
56
14
35
17
32
1.90
75323--75435
57
1.9
59
89
5
176
51
7
15
25
1.70
86714--86786
36
2.0
36
91
0
119
56
0
1
42
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93942--93973
14
2.3
14
100
0
64
62
0
6
31
1.20
99128--99183
24
2.3
24
96
0
103
28
16
16
39
1.89
99416--99471
9
5.5
11
75
23
52
5
30
26
37
1.79
99407--99472
30
2.2
30
89
5
98
9
30
25
34
1.87
101452--101492
17
2.4
17
91
0
64
17
43
12
26
1.84
102636--102807
85
2.0
85
96
0
317
27
20
16
36
1.94
103592--103628
18
2.1
18
85
14
51
37
0
13
48
1.43
108369--108410
11
3.8
11
78
12
50
26
2
0
71
0.98
108368--108410
16
2.6
17
81
7
61
27
2
0
69
1.00
108451--108479
15
1.9
15
100
0
58
34
0
6
58
1.25
108473--108503
16
1.9
16
100
0
62
38
3
19
38
1.68
108471--108566
24
4.0
23
73
17
72
41
2
10
45
1.50
108511--108584
21
3.4
21
76
10
85
41
0
6
51
1.28
108489--108658
45
3.7
45
82
10
168
44
1
8
45
1.45
108511--108600
21
4.1
20
74
17
63
41
1
7
50
1.39
108440--108618
59
3.0
60
79
9
204
40
1
9
48
1.46
108602--108682
24
3.4
24
86
3
92
49
2
6
41
1.41
108499--108686
48
4.0
45
77
14
136
45
2
7
44
1.43
108686--108727
20
2.1
20
95
0
75
42
7
4
45
1.52
108713--108772
22
2.7
23
84
10
79
36
8
8
46
1.64
112424--112634
75
2.8
76
82
6
259
21
22
32
23
1.98

Tables:   1

The End!