genome.fa.s8760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008760.1 Hibiscus syriacus cultivar Beakdansim tig00111852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  225222

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11013--11054	19	2.2	19	86	0	57	30	0	4	64	1.14
13378--13476	51	2.0	50	80	6	110	49	13	12	25	1.76
13581--13698	62	1.9	62	80	3	139	56	0	5	36	1.29
13695--13724	12	2.5	12	100	0	60	46	0	6	46	1.29
15840--15916	37	2.1	37	85	4	102	48	1	3	46	1.28
16136--16179	14	3.1	14	87	6	63	43	6	2	47	1.42
17268--17294	14	1.9	14	100	0	54	48	0	14	37	1.45
22909--23015	34	3.1	33	78	14	85	34	0	3	61	1.14
22942--23020	34	2.4	34	85	8	101	37	0	1	60	1.05
24736--24783	21	2.3	21	85	0	60	25	39	12	22	1.89
24789--24880	21	4.4	21	91	5	125	18	33	27	20	1.96
25400--25496	33	2.9	34	85	3	142	55	3	3	38	1.31
25398--25503	34	3.2	33	82	8	142	54	3	2	38	1.33
25884--26069	103	1.8	103	98	0	363	30	22	27	19	1.98
25969--26464	126	3.9	126	99	0	976	32	19	25	22	1.98
26532--26572	8	5.2	8	82	5	57	36	29	0	34	1.58
29564--29601	13	3.0	13	88	3	60	44	0	0	55	0.99
31782--31842	31	2.0	31	90	0	95	27	9	11	50	1.70
34269--34293	5	5.0	5	100	0	50	20	0	0	80	0.72
35569--35626	15	3.9	15	76	17	50	62	1	3	32	1.22
37227--37343	60	2.0	60	83	6	148	33	8	15	42	1.77
41742--41779	19	2.1	18	85	9	51	36	0	21	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44914--44991	31	2.5	31	87	6	106	33	7	20	38	1.81
45904--45962	29	2.0	29	100	0	118	37	10	13	38	1.79
55062--55096	2	17.5	2	87	0	52	42	0	0	57	0.99
61923--62091	58	2.9	57	77	14	173	34	18	5	40	1.75
61960--62091	58	2.2	59	86	7	180	34	18	6	41	1.75
61960--62108	58	2.5	59	78	14	139	34	18	6	40	1.75
65425--65493	22	2.8	25	79	16	90	55	17	0	27	1.43
65470--66017	32	19.4	32	73	24	479	52	12	0	35	1.39
65600--65674	22	3.2	23	75	17	82	54	17	0	28	1.43
65453--66017	54	10.1	54	80	13	617	52	12	0	35	1.39
65678--65720	22	2.0	22	95	0	77	51	11	0	37	1.39
65680--65728	22	2.2	22	85	3	62	55	12	0	32	1.37
65732--65774	22	2.0	22	95	0	77	51	11	0	37	1.39
65734--65782	22	2.2	22	85	3	62	55	12	0	32	1.37
65502--65886	188	2.0	194	92	5	647	52	12	0	34	1.40
65700--65972	86	3.3	83	85	10	385	52	12	0	35	1.39
65857--65909	14	3.5	14	72	18	52	56	5	0	37	1.23
65372--66017	220	2.9	223	83	9	835	52	12	0	35	1.41
65898--65940	22	2.0	22	90	0	68	48	11	0	39	1.40
65952--66054	22	4.5	22	71	7	80	50	8	0	40	1.33
65997--66112	15	7.5	15	77	17	94	48	2	0	49	1.15
65943--66095	69	2.3	65	84	7	184	49	5	0	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66042--66112	28	2.4	29	90	4	108	43	0	0	56	0.99
77362--77404	19	2.3	19	95	0	77	23	20	23	32	1.98
78813--78862	15	3.3	15	80	0	64	46	16	10	28	1.78
84538--84584	19	2.3	20	85	10	69	44	4	0	51	1.21
84625--84676	5	10.4	5	75	8	52	46	0	0	53	1.00
84625--84674	15	3.3	15	91	0	82	48	0	0	52	1.00
86042--86088	20	2.4	19	89	10	76	14	12	0	72	1.13
88666--88705	18	2.2	19	90	4	64	57	2	0	40	1.12
88645--88693	15	3.3	15	76	18	50	63	0	0	36	0.95
103901--104225	163	2.0	162	99	0	641	30	18	20	29	1.97
108318--108355	19	2.0	20	89	5	60	60	0	5	34	1.19
108528--108553	3	8.7	3	100	0	52	69	0	0	30	0.89
115226--115285	29	2.1	29	96	0	111	36	11	21	30	1.89
116137--116162	2	13.0	2	100	0	52	50	0	0	50	1.00
121289--121316	6	4.7	6	100	0	56	67	0	32	0	0.91
121277--121316	18	2.2	18	86	0	53	62	2	32	2	1.22
121580--121680	31	3.4	29	82	6	96	38	14	10	35	1.82
121989--122027	15	2.4	17	87	12	55	41	5	7	46	1.55
137816--137871	18	3.1	17	78	19	60	64	0	1	33	1.04
137804--137866	31	2.0	31	82	14	76	66	1	1	30	1.10
138132--138179	24	2.0	24	92	4	80	47	10	0	41	1.37
138626--138665	20	2.0	21	85	5	55	22	2	0	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139221--139275	22	2.5	22	79	8	67	18	20	10	50	1.76
145257--145332	31	2.4	31	82	4	89	22	26	13	38	1.91
151403--151467	32	2.1	32	82	8	80	16	7	40	35	1.78
152022--152070	24	2.0	24	88	0	71	28	30	16	24	1.96
152095--152146	27	1.9	27	96	0	95	19	21	21	38	1.94
166355--166430	13	5.8	13	68	17	50	59	1	1	38	1.14
169058--169131	29	2.6	29	82	4	87	39	12	9	39	1.75
176265--176395	58	2.2	59	81	5	140	41	6	21	31	1.77
176743--176879	60	2.3	60	84	2	168	40	6	22	30	1.79
181221--181277	30	1.9	30	89	7	89	52	3	8	35	1.50
184064--184732	340	2.0	340	97	0	1266	38	13	14	34	1.84
188756--189259	173	2.9	173	99	0	990	41	15	18	24	1.89
193953--194068	61	1.9	61	85	0	160	37	22	11	29	1.89
195017--195066	24	2.1	25	78	14	61	18	34	4	44	1.68
201180--201226	2	23.5	2	100	0	94	48	0	0	51	1.00
204299--204373	31	2.4	31	84	8	91	42	2	17	37	1.63
204906--204947	16	2.6	16	88	0	57	45	21	16	16	1.86
204918--204978	32	1.9	32	86	0	86	44	29	18	8	1.78
204934--204978	16	2.8	16	82	0	63	44	31	20	4	1.71
204934--205002	32	2.2	32	86	0	93	42	36	15	5	1.72
205061--205110	18	2.9	17	75	19	50	52	0	2	46	1.12
205204--205311	42	2.6	42	95	2	191	62	1	5	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205218--205290	19	3.6	19	68	13	65	68	2	5	23	1.24
205685--205766	32	2.5	33	84	3	105	37	26	10	24	1.89
205979--206042	33	1.9	33	96	0	119	42	12	26	18	1.86
209879--209910	2	16.0	2	100	0	64	50	0	0	50	1.00
215636--215891	39	6.5	39	88	0	377	29	33	27	9	1.89
215636--215891	118	2.2	117	93	0	440	29	33	27	9	1.89
221723--221763	20	2.0	21	85	4	57	58	2	2	36	1.24
221792--221841	25	2.0	25	84	0	64	48	4	2	46	1.32

Tables:   1

The End!