Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008762.1 Hibiscus syriacus cultivar Beakdansim tig00111855_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 187765
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1281 original size:15 final size:15
Alignment explanation
Indices: 1263--1293 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1253 AAATTATAAA
1263 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
1278 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
1293 T
1 T
1294 CTATTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:5235 original size:13 final size:15
Alignment explanation
Indices: 5200--5236 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
5190 AAAAAATTGT
5200 AAAGAAAGGGAGAAG
1 AAAGAAAGGGAGAAG
5215 ATAAGAAAGGGAG-AG
1 A-AAGAAAGGGAGAAG
5230 -AAGAAAG
1 AAAGAAAG
5237 TTTACCAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
15 3 0.14
16 11 0.52
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (15 bp):
AAAGAAAGGGAGAAG
Found at i:15688 original size:34 final size:34
Alignment explanation
Indices: 15623--15689 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
15613 AATAACACAT
* **
15623 GGGCTGGTTTTTCTTAATGGATTCTCGGGTTTAA
1 GGGCTGGTTTTTCATAATGGATTCTAAGGTTTAA
*
15657 GGGCTGGTTTTTCATACTCGGATT-TAAGGTTTA
1 GGGCTGGTTTTTCATAAT-GGATTCTAAGGTTTA
15690 GAGTCTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.16, C:0.12, G:0.28, T:0.43
Consensus pattern (34 bp):
GGGCTGGTTTTTCATAATGGATTCTAAGGTTTAA
Found at i:27067 original size:19 final size:19
Alignment explanation
Indices: 27043--27081 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
27033 ATGGACGATC
27043 TATTTTAAATAATGTATTT
1 TATTTTAAATAATGTATTT
27062 TATTTTAAATAATGTATTT
1 TATTTTAAATAATGTATTT
27081 T
1 T
27082 CTTGGTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTTTAAATAATGTATTT
Found at i:27943 original size:2 final size:2
Alignment explanation
Indices: 27936--28020 Score: 163
Period size: 2 Copynumber: 43.0 Consensus size: 2
27926 GATACGCCAC
27936 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27978 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28019 TA
1 TA
28021 ATACAATTGT
Statistics
Matches: 82, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 81 0.99
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:31109 original size:13 final size:13
Alignment explanation
Indices: 31091--31115 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31081 TCTTATATTG
31091 AACTGTTAATATC
1 AACTGTTAATATC
31104 AACTGTTAATAT
1 AACTGTTAATAT
31116 ATATATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (13 bp):
AACTGTTAATATC
Found at i:51802 original size:15 final size:14
Alignment explanation
Indices: 51747--51802 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 14
51737 TATAAGAGGA
51747 AATAAAATATT-ATT
1 AATAAAA-ATTAATT
51761 AATTAAAAATATAATT
1 AA-TAAAAAT-TAATT
51777 -ATACAAAATTAATT
1 AATA-AAAATTAATT
51791 AATAAAAGATTA
1 AATAAAA-ATTA
51803 TAAGGGAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
14 14 0.39
15 19 0.53
16 3 0.08
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (14 bp):
AATAAAAATTAATT
Found at i:53196 original size:14 final size:14
Alignment explanation
Indices: 53177--53203 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
53167 TCTATGGTAA
53177 ACATCATGGTACAG
1 ACATCATGGTACAG
53191 ACATCATGGTACA
1 ACATCATGGTACA
53204 ACTGAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (14 bp):
ACATCATGGTACAG
Found at i:55472 original size:22 final size:22
Alignment explanation
Indices: 55428--55473 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
55418 TAGATGGTCG
*
55428 TTAATATAATTTACCTTTTATT
1 TTAATATAATTTACCTTTAATT
*
55450 TTAA-ATAATTTATCTTTAAATT
1 TTAATATAATTTACCTTT-AATT
55472 TT
1 TT
55474 TAATTGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (22 bp):
TTAATATAATTTACCTTTAATT
Found at i:55515 original size:16 final size:16
Alignment explanation
Indices: 55494--55527 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
55484 TTAATTATAT
55494 TTTAAATTCTTTA-AAA
1 TTTAAATT-TTTATAAA
55510 TTTAAATTTTTATAAA
1 TTTAAATTTTTATAAA
55526 TT
1 TT
55528 ATATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAAATTTTTATAAA
Found at i:60488 original size:18 final size:18
Alignment explanation
Indices: 60465--60500 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60455 TTAAAATTTA
60465 AAATTGTTATCTATTTTT
1 AAATTGTTATCTATTTTT
60483 AAATTGTTATCTATTTTT
1 AAATTGTTATCTATTTTT
60501 TATTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (18 bp):
AAATTGTTATCTATTTTT
Found at i:60763 original size:22 final size:23
Alignment explanation
Indices: 60713--60766 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
60703 TATATAATTA
*
60713 AGTCTATCTAACTCGTACAAAAT
1 AGTCTATCTAACTCGTACAAAAC
*
60736 AATCTAGTCT-AC-CGTACAAAAC
1 AGTCTA-TCTAACTCGTACAAAAC
60758 AGTCTATCT
1 AGTCTATCT
60767 GATTAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.11
22 14 0.52
23 7 0.26
24 3 0.11
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (23 bp):
AGTCTATCTAACTCGTACAAAAC
Found at i:66040 original size:16 final size:16
Alignment explanation
Indices: 66019--66059 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
66009 TGAACAAATG
66019 AACGAACACGAACATA
1 AACGAACACGAACATA
66035 AACGAACACGAACATA
1 AACGAACACGAACATA
66051 AACGAACAC
1 AACGAACAC
66060 AAAAGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.56, C:0.27, G:0.12, T:0.05
Consensus pattern (16 bp):
AACGAACACGAACATA
Found at i:66415 original size:34 final size:34
Alignment explanation
Indices: 66377--66468 Score: 112
Period size: 34 Copynumber: 2.7 Consensus size: 34
66367 TGGGTTGAAT
* * * *
66377 ATAAACGAATGTAGATAAACGAACATACATGGAC
1 ATAAACGAACGAAGATAAACAAACATACACGGAC
* *
66411 ATAAATGAACGAATATAAACAAACATACACGGAC
1 ATAAACGAACGAAGATAAACAAACATACACGGAC
* *
66445 ATAAATGAACGAACATAAACAAAC
1 ATAAACGAACGAAGATAAACAAAC
66469 GGATTACCGA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.15
Consensus pattern (34 bp):
ATAAACGAACGAAGATAAACAAACATACACGGAC
Found at i:68047 original size:31 final size:31
Alignment explanation
Indices: 67989--68047 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
67979 TGCAAAACAG
*
67989 TCCCCCAACATTTAGTCCGTTTACAATACTA
1 TCCCCCAACATTTAGTCCATTTACAATACTA
* * *
68020 TCCCCCAATATTTAGTTCATTTGCAATA
1 TCCCCCAACATTTAGTCCATTTACAATA
68048 TGGTCCCCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (31 bp):
TCCCCCAACATTTAGTCCATTTACAATACTA
Found at i:68055 original size:31 final size:31
Alignment explanation
Indices: 67988--68055 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
67978 TTGCAAAACA
*
67988 GTCCCCCAACATTTAGTCCGTTTACAATACT
1 GTCCCCCAACATTTAGTCCATTTACAATACT
* * * *
68019 ATCCCCCAATATTTAGTTCATTTGCAATA-T
1 GTCCCCCAACATTTAGTCCATTTACAATACT
68049 GGTCCCC
1 -GTCCCC
68056 GACGTAACCG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.34
Consensus pattern (31 bp):
GTCCCCCAACATTTAGTCCATTTACAATACT
Found at i:69511 original size:24 final size:23
Alignment explanation
Indices: 69456--69546 Score: 78
Period size: 24 Copynumber: 3.8 Consensus size: 23
69446 TAGTGTTTTA
* *
69456 TTTATTTCATTTGTTTTTATAGAC-
1 TTTATTT-ATTTATTTTTAT-GTCT
69480 TTTATTTATTTATTTTTATGTCT
1 TTTATTTATTTATTTTTATGTCT
*
69503 TTTATTTTATTT-TATTTTATTTCAT
1 TTTA-TTTATTTAT-TTTTATGTC-T
* *
69528 TTCATTTCTTTATTTTTAT
1 TTTATTTATTTATTTTTAT
69547 TTAATTTACT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
22 2 0.04
23 16 0.28
24 34 0.60
25 5 0.09
ACGTcount: A:0.19, C:0.07, G:0.03, T:0.71
Consensus pattern (23 bp):
TTTATTTATTTATTTTTATGTCT
Found at i:77320 original size:23 final size:21
Alignment explanation
Indices: 77267--77328 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
77257 TTTTGGTGTA
*
77267 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
77287 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
77308 GAAGAGGAACCGATTCCCCCC
1 G-AG-GGAACCGATTCCCCCC
77329 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 2 0.06
23 15 0.42
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:81248 original size:14 final size:14
Alignment explanation
Indices: 81198--81248 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
81188 AATCAGAACA
81198 AAAAGAAAAAAGAG
1 AAAAGAAAAAAGAG
81212 AAAA-AAACAAAGAG
1 AAAAGAAA-AAAGAG
*
81226 AAAATAAAAAAGA-
1 AAAAGAAAAAAGAG
*
81239 AAAAGGAAAA
1 AAAAGAAAAA
81249 TTGCAGAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 11 0.33
14 19 0.58
15 3 0.09
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAAGAAAAAAGAG
Found at i:81263 original size:7 final size:7
Alignment explanation
Indices: 81197--81248 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
81187 CAATCAGAAC
81197 AAAAAGA
1 AAAAAGA
81204 AAAAAGA
1 AAAAAGA
81211 GAAAAA-A
1 -AAAAAGA
*
81218 ACAAAGA
1 AAAAAGA
* *
81225 GAAAATA
1 AAAAAGA
81232 AAAAAGA
1 AAAAAGA
*
81239 AAAAGGA
1 AAAAAGA
81246 AAA
1 AAA
81249 TTGCAGAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
6 4 0.11
7 27 0.75
8 5 0.14
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (7 bp):
AAAAAGA
Found at i:81434 original size:69 final size:69
Alignment explanation
Indices: 81321--81458 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 69
81311 GATTTAAACT
81321 ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTCAAAGATCATAGAGCA
1 ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTCAAAGATCATAGAGCA
81386 TCAA
66 TCAA
* * * * * *
81390 ATGAGATTGATCAAGCACAATCATTTCTGAATTACTGAATCACTTCACTCGAAGATCATGGATCA
1 ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTCAAAGATCATAGAGCA
81455 TCAA
66 TCAA
81459 GAGAGAGACA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (69 bp):
ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTCAAAGATCATAGAGCA
TCAA
Found at i:82418 original size:32 final size:31
Alignment explanation
Indices: 82382--82499 Score: 121
Period size: 32 Copynumber: 3.7 Consensus size: 31
82372 GGAACAATGA
82382 GGGCATCTTTGAAGATTCAACATCAAATGTTG
1 GGGCATCTTTG-AGATTCAACATCAAATGTTG
* * *
82414 GGGCATTTTTTTAGATTTAACATCAAATGTT-
1 GGGCA-TCTTTGAGATTCAACATCAAATGTTG
* * * * *
82445 GGGCTTTTTTGAGATTTAACATCGAATATTG
1 GGGCATCTTTGAGATTCAACATCAAATGTTG
*
82476 GGGCATCTTTGGGAATTCAACATC
1 GGGCATCTTTGAG-ATTCAACATC
82500 CTCATACAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
30 22 0.31
31 14 0.19
32 32 0.44
33 4 0.06
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (31 bp):
GGGCATCTTTGAGATTCAACATCAAATGTTG
Found at i:82460 original size:30 final size:31
Alignment explanation
Indices: 82389--82477 Score: 117
Period size: 30 Copynumber: 2.8 Consensus size: 31
82379 TGAGGGCATC
*
82389 TTTGAAGATTCAACATCAAATGTTGGGGCATTT
1 TTTG-AGATTTAACATCAAATGTT-GGGCATTT
*
82422 TTTTAGATTTAACATCAAATGTTGGGC-TTT
1 TTTGAGATTTAACATCAAATGTTGGGCATTT
* *
82452 TTTGAGATTTAACATCGAATATTGGG
1 TTTGAGATTTAACATCAAATGTTGGG
82478 GCATCTTTGG
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
30 26 0.51
31 4 0.08
32 18 0.35
33 3 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (31 bp):
TTTGAGATTTAACATCAAATGTTGGGCATTT
Found at i:83351 original size:106 final size:106
Alignment explanation
Indices: 83166--83412 Score: 352
Period size: 106 Copynumber: 2.3 Consensus size: 106
83156 AATTTCAGAG
** * *
83166 CCAATTTCAACTTCACAGCGAAAAATATTGGACTCGAGAAAACACAAGTTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGAAAACACAAGTTCAACATCACAACGAA
** * *
83231 GGGACGGCTGGTTGTCAATAAACAATTTACCAGTTTTAAAA
66 GGGACAACTGGTTGTCAACAAACAATTTACCAGTTCTAAAA
*
83272 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACATCACAACGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGAAAACACAAGTTCAACATCACAACGAA
* * *
83337 GGGACAACTGGTTGTCAACAAACAATTTCCCAGTTCTAGAG
66 GGGACAACTGGTTGTCAACAAACAATTTACCAGTTCTAAAA
* *
83378 TCAATTTCAACTTCAC-GACGGAGGATATTGGACTC
1 CCAATTTCAACTTCACAG-CGAAGGATATTGGACTC
83413 AAAACAATAT
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
105 1 0.01
106 125 0.99
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (106 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGAAAACACAAGTTCAACATCACAACGAA
GGGACAACTGGTTGTCAACAAACAATTTACCAGTTCTAAAA
Found at i:83737 original size:101 final size:101
Alignment explanation
Indices: 83560--83745 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
83550 GACAATTTCC
* * *
83560 AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
1 AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCATTGAATAACTTTCCCTTGAAAC
83625 AAATTTCGTCTCCCTTGAGACATTTTTTTTGGAACT
66 AAATTTCGTCTCCCTTGAGACATTTTTTTTGGAACT
*
83661 AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAA-CATTGAA-AACATTTCCCTTGAA
1 AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-AAATCATTGAATAAC-TTTCCCTTGAA
** * *
83724 ATGAATTTTGTCTCTCTTGAGA
64 ACAAATTTCGTCTCCCTTGAGA
83746 TAGTTTCCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
100 2 0.03
101 70 0.93
102 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.40
Consensus pattern (101 bp):
AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCATTGAATAACTTTCCCTTGAAAC
AAATTTCGTCTCCCTTGAGACATTTTTTTTGGAACT
Found at i:83759 original size:15 final size:15
Alignment explanation
Indices: 83739--83773 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
83729 TTTTGTCTCT
*
83739 CTTGAGATAGTTTCC
1 CTTGAGACAGTTTCC
*
83754 CTTGAGACAGTTTCT
1 CTTGAGACAGTTTCC
83769 CTTGA
1 CTTGA
83774 AGCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
CTTGAGACAGTTTCC
Found at i:83960 original size:35 final size:35
Alignment explanation
Indices: 83918--84002 Score: 145
Period size: 35 Copynumber: 2.4 Consensus size: 35
83908 TTGAATACAA
83918 TTTCTCTTGAAACACAAAAAAAACCTTTGAA-ATTG
1 TTTCTCTTGAAACACAAAAAAAACCTTTGAAGA-TG
*
83953 TTTCTCTTGAAACACAAAAAACACCTTTGAAGATG
1 TTTCTCTTGAAACACAAAAAAAACCTTTGAAGATG
83988 TTTCTCTTGAAACAC
1 TTTCTCTTGAAACAC
84003 CAAACCCTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
35 47 0.98
36 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (35 bp):
TTTCTCTTGAAACACAAAAAAAACCTTTGAAGATG
Found at i:85421 original size:5 final size:4
Alignment explanation
Indices: 85389--85435 Score: 53
Period size: 4 Copynumber: 11.8 Consensus size: 4
85379 TTTTATGGAC
*
85389 TTTA TTTA TTTA TTT- TTATA TCT- TTTA TTTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TT-TA TTTA TTTA -TTTA TTTA TTTA TTTA TTT
85436 CGTTTCTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 4 0.11
4 28 0.76
5 5 0.14
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:85451 original size:36 final size:36
Alignment explanation
Indices: 85389--85460 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
85379 TTTTATGGAC
*
85389 TTTATTTATTTATTTTTATATCTTTTATTTTATTTA
1 TTTATTTATTTATTTTTATATCTTTTATTTAATTTA
*
85425 TTTATTTATTTCGTTTCTT-TAT-TTTTATTTAATTTA
1 TTTATTTATTT-ATTT-TTATATCTTTTATTTAATTTA
85461 CTTGTTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 24 0.75
37 6 0.19
38 2 0.06
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (36 bp):
TTTATTTATTTATTTTTATATCTTTTATTTAATTTA
Found at i:87523 original size:31 final size:31
Alignment explanation
Indices: 87479--87547 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
87469 GTAACGGCGT
*
87479 CAAACGACCAGTTACGTAGGGGACCATATTG
1 CAAACGGCCAGTTACGTAGGGGACCATATTG
* *
87510 CAAACGGCTAGTTACGTTGGGGACCATATTG
1 CAAACGGCCAGTTACGTAGGGGACCATATTG
87541 CAAACGG
1 CAAACGG
87548 ACTAAATGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (31 bp):
CAAACGGCCAGTTACGTAGGGGACCATATTG
Found at i:88492 original size:17 final size:18
Alignment explanation
Indices: 88470--88505 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
88460 ATTATTAATG
*
88470 ATTAAATT-TTTTGAATT
1 ATTAAATTATTTTAAATT
88487 ATTAAATTATTTTAAATT
1 ATTAAATTATTTTAAATT
88505 A
1 A
88506 AAATAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
ATTAAATTATTTTAAATT
Found at i:105981 original size:13 final size:13
Alignment explanation
Indices: 105963--105988 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105953 CTACCTGAAA
105963 GGCAAATTTGGTC
1 GGCAAATTTGGTC
105976 GGCAAATTTGGTC
1 GGCAAATTTGGTC
105989 AAGTCAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (13 bp):
GGCAAATTTGGTC
Found at i:111672 original size:21 final size:21
Alignment explanation
Indices: 111646--111690 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
111636 GATTTCTGGG
* *
111646 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
111667 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
111688 CAA
1 CAA
111691 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:113560 original size:103 final size:103
Alignment explanation
Indices: 113376--113588 Score: 372
Period size: 103 Copynumber: 2.1 Consensus size: 103
113366 GGGTCTACGC
*
113376 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* * *
113441 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATATATATGATTCTTAAGGAATGATATGT
113479 GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
*
113544 CCCTAGTATATATATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATATATATGATTCTTAAGGAATGATATGT
*
113582 AGTCCTT
1 GGTCCTT
113589 ATGGACATTA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCCTAGCATATATATATGATTCTTAAGGAATGATATGT
Found at i:113638 original size:23 final size:23
Alignment explanation
Indices: 113605--113672 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
113595 ATTATTATAT
113605 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
113628 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
113651 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
113673 AGCTGTGGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:119015 original size:24 final size:24
Alignment explanation
Indices: 118970--119019 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
118960 TGGTGGTTGG
*
118970 TTTAATGGATGTTTAAACTTTATT
1 TTTAATGGATATTTAAACTTTATT
*
118994 TTTAATGGTATATTT-AAGTTTATT
1 TTTAATGG-ATATTTAAACTTTATT
119018 TT
1 TT
119020 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (24 bp):
TTTAATGGATATTTAAACTTTATT
Found at i:125877 original size:19 final size:21
Alignment explanation
Indices: 125840--125882 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
125830 TAACTTTTTC
*
125840 TTTTCTCTTTCTTTATTAA-T
1 TTTTCTCTTTCATTATTAACT
125860 TTTTCTCTTTCATT-TTAACT
1 TTTTCTCTTTCATTATTAACT
125880 TTT
1 TTT
125883 ACTTTTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTCTCTTTCATTATTAACT
Found at i:128177 original size:20 final size:20
Alignment explanation
Indices: 128140--128182 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
128130 ATTCCACCAC
*
128140 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
128160 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
128180 ATG
1 ATG
128183 TGCTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:129979 original size:24 final size:24
Alignment explanation
Indices: 129934--129983 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
129924 TGGTTGTTGG
*
129934 TTTAATGGATGTTTAAACTTTATT
1 TTTAATGGATATTTAAACTTTATT
*
129958 TTTAATGGTATATTT-AAGTTTATT
1 TTTAATGG-ATATTTAAACTTTATT
129982 TT
1 TT
129984 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (24 bp):
TTTAATGGATATTTAAACTTTATT
Found at i:135506 original size:2 final size:2
Alignment explanation
Indices: 135501--135529 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
135491 ACACACACAC
135501 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
135530 GAGATTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:137393 original size:41 final size:41
Alignment explanation
Indices: 137342--137425 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
137332 GAACGAAACC
*
137342 AACTACAGTTGCATAACTGAAAATACTTCCCATAAATTCAG
1 AACTACAGTTGCATAAATGAAAATACTTCCCATAAATTCAG
* * * *
137383 AACTGCAGTTGTATAAATTAAGATACTTCCCATAAATTCAG
1 AACTACAGTTGCATAAATGAAAATACTTCCCATAAATTCAG
137424 AA
1 AA
137426 TTTCAGCCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.29
Consensus pattern (41 bp):
AACTACAGTTGCATAAATGAAAATACTTCCCATAAATTCAG
Found at i:139601 original size:14 final size:15
Alignment explanation
Indices: 139573--139601 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
139563 TTACCTATCA
139573 AATTACTCGTAATTT
1 AATTACTCGTAATTT
139588 AATTACTC-TAATTT
1 AATTACTCGTAATTT
139602 TTTATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.14, G:0.03, T:0.48
Consensus pattern (15 bp):
AATTACTCGTAATTT
Found at i:141736 original size:27 final size:28
Alignment explanation
Indices: 141706--141772 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
141696 GCATATATTA
141706 AATAATTAATTTT-AAAAATTTAAATAT
1 AATAATTAATTTTAAAAAATTTAAATAT
141733 AATAATTAATTTTAAAAAATTTAAATAT
1 AATAATTAATTTTAAAAAATTTAAATAT
141761 AATAATTAATTT
1 AATAATTAATTT
141773 AATTTAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
27 13 0.33
28 26 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
AATAATTAATTTTAAAAAATTTAAATAT
Found at i:142072 original size:17 final size:17
Alignment explanation
Indices: 142050--142084 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
142040 AGCTTCATTT
142050 GTAAATGTCAATATCTA
1 GTAAATGTCAATATCTA
142067 GTAAATGTCAATATCTA
1 GTAAATGTCAATATCTA
142084 G
1 G
142085 ATTTTTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (17 bp):
GTAAATGTCAATATCTA
Found at i:153338 original size:21 final size:22
Alignment explanation
Indices: 153313--153370 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
153303 TACTTTTTTA
153313 AAAAATCAATAAAAATGT-AAT
1 AAAAATCAATAAAAATGTGAAT
** *
153334 AAAAAAGAATTAAAA-GTGAAT
1 AAAAATCAATAAAAATGTGAAT
*
153355 AAAATTCAATAAAAAT
1 AAAAATCAATAAAAAT
153371 ATTATTTCTA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.22
Consensus pattern (22 bp):
AAAAATCAATAAAAATGTGAAT
Found at i:155107 original size:35 final size:35
Alignment explanation
Indices: 155061--155136 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
155051 AAAACAGTCC
* *
155061 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
155096 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
155131 TCAATT
1 TCAATT
155137 AAATTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:155679 original size:130 final size:130
Alignment explanation
Indices: 155533--155780 Score: 424
Period size: 130 Copynumber: 1.9 Consensus size: 130
155523 TATTTATATA
* **
155533 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* *
155598 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
155663 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
155728 TTAACACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
155781 GAAGAAAATT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 110 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:156264 original size:16 final size:18
Alignment explanation
Indices: 156243--156276 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
156233 ATTTCTTATT
156243 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
156259 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
156277 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:157299 original size:188 final size:188
Alignment explanation
Indices: 156977--157349 Score: 701
Period size: 188 Copynumber: 2.0 Consensus size: 188
156967 AAATGCTACT
*
156977 TACAAACTAAAGAATGGAGAACAATGCACATGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
1 TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
* *
157042 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTGTTTTCAAGTCTCCACGTA
66 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACATA
157107 TGCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTGAAAGTTAGCA
131 TGCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTGAAAGTTAGCA
157165 TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
1 TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
157230 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACATA
66 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACATA
* *
157295 TGCAATATTAAACTCCATACACACACCAGGAAATAACTTGCTAAGTTGAAAGTTA
131 TGCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTGAAAGTTA
157350 ACAAACCAGC
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
188 180 1.00
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (188 bp):
TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACATA
TGCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTGAAAGTTAGCA
Found at i:159033 original size:6 final size:6
Alignment explanation
Indices: 159024--159050 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
159014 ATATTATTTT
159024 AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA
159051 TTAAAAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:159452 original size:19 final size:19
Alignment explanation
Indices: 159428--159466 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
159418 AAAGGGGGAA
159428 GAGGGGATGGGGAATGAAG
1 GAGGGGATGGGGAATGAAG
159447 GAGGGGATGGGGAATGAAG
1 GAGGGGATGGGGAATGAAG
159466 G
1 G
159467 GGGAAAGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.59, T:0.10
Consensus pattern (19 bp):
GAGGGGATGGGGAATGAAG
Found at i:162234 original size:22 final size:21
Alignment explanation
Indices: 162194--162236 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
162184 ATTAAATTAT
**
162194 TAAAACATAATAATTTATAAA
1 TAAAACATAATAAACTATAAA
162215 TAAAACCATAATAAACTATAAA
1 TAAAA-CATAATAAACTATAAA
162237 AAATGTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAACATAATAAACTATAAA
Found at i:162336 original size:22 final size:22
Alignment explanation
Indices: 162311--162352 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
162301 TTTTTAAATA
*
162311 TTAATAAATCATAAATAATACT
1 TTAATAAATCAAAAATAATACT
*
162333 TTAATAAATTAAAAATAATA
1 TTAATAAATCAAAAATAATA
162353 ATTAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
TTAATAAATCAAAAATAATACT
Found at i:162360 original size:22 final size:22
Alignment explanation
Indices: 162313--162360 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
162303 TTTAAATATT
* * *
162313 AATAAATCATAAATAATACTTT
1 AATAAATCAAAAATAATAATTA
*
162335 AATAAATTAAAAATAATAATTA
1 AATAAATCAAAAATAATAATTA
162357 AATA
1 AATA
162361 TTAAATCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATCAAAAATAATAATTA
Found at i:163642 original size:27 final size:27
Alignment explanation
Indices: 163611--163666 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
163601 AATAAATTTA
163611 ATTTAAATAAAAAATATATACT-TATAT
1 ATTTAAATAAAAAATATATA-TATATAT
* * *
163638 ATTTAATTTAAATATATATATATATAT
1 ATTTAAATAAAAAATATATATATATAT
163665 AT
1 AT
163667 ACCGGCCCGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
ATTTAAATAAAAAATATATATATATAT
Found at i:169404 original size:31 final size:31
Alignment explanation
Indices: 169367--169429 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
169357 TATATTATAC
169367 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
1 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
169398 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
1 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
169429 C
1 C
169430 CAACTAGTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.30, G:0.22, T:0.10
Consensus pattern (31 bp):
CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
Found at i:175402 original size:18 final size:18
Alignment explanation
Indices: 175379--175571 Score: 121
Period size: 18 Copynumber: 10.9 Consensus size: 18
175369 TTAAAATCCT
175379 AAATCCTAGAAACCCTAC
1 AAATCCTAGAAACCCTAC
*
175397 AAATCCTAGAAACACTAC
1 AAATCCTAGAAACCCTAC
* * *
175415 AAACCCTA-AAACCTTAT
1 AAATCCTAGAAACCCTAC
*
175432 AAA-CCATAGAAAACCTAC
1 AAATCC-TAGAAACCCTAC
* *
175450 --ACCCTAGAAACCC-AA
1 AAATCCTAGAAACCCTAC
* * *
175465 AAAACCCAAAAACCCTAC
1 AAATCCTAGAAACCCTAC
* * *
175483 AAATCATACAAACCTTA-
1 AAATCCTAGAAACCCTAC
* * *
175500 AAAACTTTAAAAACCCTAC
1 AAATC-CTAGAAACCCTAC
* *
175519 AAACCCTAGAAACCATAC
1 AAATCCTAGAAACCCTAC
* * *
175537 AAA-CCTTACAAATCCTAT
1 AAATCC-TAGAAACCCTAC
175555 AAATCCTAGAAACCCTA
1 AAATCCTAGAAACCCTA
175572 AACCCTAGAA
Statistics
Matches: 132, Mismatches: 33, Indels: 20
0.71 0.18 0.11
Matches are distributed among these distances:
15 1 0.01
16 11 0.08
17 29 0.22
18 85 0.64
19 6 0.05
ACGTcount: A:0.50, C:0.31, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCCTAGAAACCCTAC
Found at i:175404 original size:9 final size:9
Alignment explanation
Indices: 175383--175571 Score: 107
Period size: 9 Copynumber: 21.4 Consensus size: 9
175373 AATCCTAAAT
*
175383 CCTAGAAAC
1 CCTACAAAC
*
175392 CCTACAAAT
1 CCTACAAAC
*
175401 CCTAGAAAC
1 CCTACAAAC
*
175410 ACTACAAAC
1 CCTACAAAC
175419 CCTA-AAAC
1 CCTACAAAC
* *
175427 CTTATAAAC
1 CCTACAAAC
* * *
175436 CATAGAAAA
1 CCTACAAAC
175445 CCTAC--AC
1 CCTACAAAC
*
175452 CCTAGAAAC
1 CCTACAAAC
* *
175461 CCAAAAAAC
1 CCTACAAAC
*
175470 CC-AAAAAC
1 CCTACAAAC
*
175478 CCTACAAAT
1 CCTACAAAC
*
175487 CATACAAAC
1 CCTACAAAC
* *
175496 CTTAAAAAC
1 CCTACAAAC
** *
175505 TTTAAAAAC
1 CCTACAAAC
175514 CCTACAAAC
1 CCTACAAAC
*
175523 CCTAGAAAC
1 CCTACAAAC
*
175532 CATACAAAC
1 CCTACAAAC
* *
175541 CTTACAAAT
1 CCTACAAAC
* *
175550 CCTATAAAT
1 CCTACAAAC
*
175559 CCTAGAAAC
1 CCTACAAAC
175568 CCTA
1 CCTA
175572 AACCCTAGAA
Statistics
Matches: 140, Mismatches: 36, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
7 5 0.04
8 15 0.11
9 120 0.86
ACGTcount: A:0.49, C:0.31, G:0.03, T:0.16
Consensus pattern (9 bp):
CCTACAAAC
Found at i:175422 original size:27 final size:25
Alignment explanation
Indices: 175372--175422 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
175362 TTAATAATTA
* *
175372 AAATCCTAAATCCTAGAAACCCTAC
1 AAATCCTAAAACCTACAAACCCTAC
175397 AAATCCTAGAAACACTACAAACCCTA
1 AAATCCTA-AAAC-CTACAAACCCTA
175423 AAACCTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.47, C:0.31, G:0.04, T:0.18
Consensus pattern (25 bp):
AAATCCTAAAACCTACAAACCCTAC
Found at i:175531 original size:27 final size:27
Alignment explanation
Indices: 175489--175582 Score: 68
Period size: 27 Copynumber: 3.6 Consensus size: 27
175479 CTACAAATCA
* * *
175489 TACAAACCTTAAAAACTTTAAAAACCC
1 TACAAACCCTAGAAACTATAAAAACCC
* * *
175516 TACAAACCCTAGAAACCATACAAACCT
1 TACAAACCCTAGAAACTATAAAAACCC
* * * *
175543 TACAAATCCTATAAA-TCCTAGAAACCC
1 TACAAACCCTAGAAACT-ATAAAAACCC
175570 T--AAACCCTAGAAA
1 TACAAACCCTAGAAA
175583 ATTGAAACCC
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
25 10 0.19
27 42 0.81
ACGTcount: A:0.49, C:0.29, G:0.03, T:0.19
Consensus pattern (27 bp):
TACAAACCCTAGAAACTATAAAAACCC
Found at i:175532 original size:36 final size:36
Alignment explanation
Indices: 175383--175748 Score: 164
Period size: 36 Copynumber: 10.2 Consensus size: 36
175373 AATCCTAAAT
* * *
175383 CCTAGAAACCCTACAAATCC-TAGAAACACTACAAAC
1 CCTAGAAACCCTA-AAAACCTTAAAAACCCTACAAAC
* * *
175419 CCTA-AAACCTTATAAACCATAGAAAA-CCTAC--AC
1 CCTAGAAACCCTAAAAACCTTA-AAAACCCTACAAAC
* * *
175452 CCTAGAAACCCAAAAAACC-CAAAAACCCTACAAAT
1 CCTAGAAACCCTAAAAACCTTAAAAACCCTACAAAC
* * * *
175487 CATACAAACCTTAAAAACTTTAAAAACCCTACAAAC
1 CCTAGAAACCCTAAAAACCTTAAAAACCCTACAAAC
* * * * * *
175523 CCTAGAAACCATACAAACCTTACAAATCCTATAAAT
1 CCTAGAAACCCTAAAAACCTTAAAAACCCTACAAAC
* *
175559 CCTAGAAACCCT-AAACCCTAGAAAATTGAAACCCTTA-AAAC
1 CCTAGAAACCCTAAAAACCT---TAA---AAACCC-TACAAAC
* ** * * * *
175600 ACTA-AAATACTAGAAACCCTAAAAACCTTAGAAAC
1 CCTAGAAACCCTAAAAACCTTAAAAACCCTACAAAC
* * * *
175635 CTTAGAAACACTTAAAACCCTT-ACAACCCTA-AAAC
1 CCTAGAAAC-CCTAAAAACCTTAAAAACCCTACAAAC
* * ** *
175670 CCTTAGAAA-CATAGAAACCTTGTAAACCCTACAAGC
1 CC-TAGAAACCCTAAAAACCTTAAAAACCCTACAAAC
* * *
175706 CCTA-AAACCCCTAAAATCCTTTAAAACCCTAGAAAC
1 CCTAGAAA-CCCTAAAAACCTTAAAAACCCTACAAAC
*
175742 CTTAGAA
1 CCTAGAA
175749 TCCTTAAACT
Statistics
Matches: 240, Mismatches: 66, Indels: 47
0.68 0.19 0.13
Matches are distributed among these distances:
32 4 0.02
33 12 0.05
34 29 0.12
35 58 0.24
36 103 0.43
37 9 0.04
38 3 0.01
40 5 0.02
41 15 0.06
42 2 0.01
ACGTcount: A:0.48, C:0.30, G:0.05, T:0.18
Consensus pattern (36 bp):
CCTAGAAACCCTAAAAACCTTAAAAACCCTACAAAC
Found at i:175634 original size:9 final size:9
Alignment explanation
Indices: 175610--175754 Score: 63
Period size: 9 Copynumber: 16.2 Consensus size: 9
175600 ACTAAAATAC
*
175610 TAGAAACCC
1 TAGAAACCT
*
175619 TAAAAACCT
1 TAGAAACCT
175628 TAGAAACCT
1 TAGAAACCT
175637 TAGAAACACT
1 TAGAAAC-CT
175647 TA-AAACCCT
1 TAGAAA-CCT
* *
175656 TA-CAACCC
1 TAGAAACCT
175664 TA-AAACCCT
1 TAGAAA-CCT
*
175673 TAGAAA-CA
1 TAGAAACCT
175681 TAGAAACCT
1 TAGAAACCT
*
175690 T-GTAAACCC
1 TAG-AAACCT
* * *
175699 TACAAGCCC
1 TAGAAACCT
*
175708 TA-AAACCCC
1 TAGAAA-CCT
175717 TA-AAATCCTT
1 TAGAAA-CC-T
*
175727 TA-AAACCC
1 TAGAAACCT
175735 TAGAAACCT
1 TAGAAACCT
*
175744 TAGAATCCT
1 TAGAAACCT
175753 TA
1 TA
175755 AACTATAACC
Statistics
Matches: 108, Mismatches: 18, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
8 18 0.17
9 77 0.71
10 13 0.12
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.21
Consensus pattern (9 bp):
TAGAAACCT
Found at i:175690 original size:17 final size:17
Alignment explanation
Indices: 175634--175688 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
175624 ACCTTAGAAA
175634 CCTTAGAAACACTTAAAAC
1 CCTTAGAAACA--TAAAAC
* * *
175653 CCTTACAACCCTAAAAC
1 CCTTAGAAACATAAAAC
175670 CCTTAGAAACATAGAAAC
1 CCTTAGAAACATA-AAAC
175688 C
1 C
175689 TTGTAAACCC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 16 0.55
18 5 0.17
19 8 0.28
ACGTcount: A:0.45, C:0.31, G:0.05, T:0.18
Consensus pattern (17 bp):
CCTTAGAAACATAAAAC
Found at i:175697 original size:44 final size:44
Alignment explanation
Indices: 175614--175715 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 44
175604 AAATACTAGA
* *
175614 AACCCTAAAAACCTTAGAAACCTTAGAAACACTTAAAACCCTTAC
1 AACCCTAAAACCCTTAGAAACCATAGAAACACTTAAAACCC-TAC
*
175659 AACCCTAAAACCCTTAGAAA-CATAGAAAC-CTTGTAAACCCTAC
1 AACCCTAAAACCCTTAGAAACCATAGAAACACTT-AAAACCCTAC
175702 AAGCCCTAAAACCC
1 AA-CCCTAAAACCC
175716 CTAAAATCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
43 8 0.15
44 25 0.48
45 19 0.37
ACGTcount: A:0.45, C:0.31, G:0.06, T:0.18
Consensus pattern (44 bp):
AACCCTAAAACCCTTAGAAACCATAGAAACACTTAAAACCCTAC
Found at i:175744 original size:18 final size:18
Alignment explanation
Indices: 175383--175742 Score: 113
Period size: 18 Copynumber: 20.6 Consensus size: 18
175373 AATCCTAAAT
*
175383 CCTAGAAACCC-TACAAAT
1 CCTAGAAACCCTTA-AAAC
*
175401 CCTAGAAACAC-TACAAAC
1 CCTAGAAACCCTTA-AAAC
175419 CCTA-AAA-CCTTATAAAC
1 CCTAGAAACCCTTA-AAAC
* * *
175436 CATAGAAAACC-T-ACAC
1 CCTAGAAACCCTTAAAAC
**
175452 CCTAGAAACCCAAAAAAC
1 CCTAGAAACCCTTAAAAC
* *
175470 CC-AAAAACCC-TACAAAT
1 CCTAGAAACCCTTA-AAAC
* *
175487 CATACAAA-CCTTAAAAAC
1 CCTAGAAACCCTT-AAAAC
** *
175505 TTTAAAAACCC-TACAAAC
1 CCTAGAAACCCTTA-AAAC
*
175523 CCTAGAAA-CCATACAAAC
1 CCTAGAAACCCTTA-AAAC
* * * *
175541 CTTACAAATCC-TATAAAT
1 CCTAGAAACCCTTA-AAAC
175559 CCTAGAAACCC-T-AAAC
1 CCTAGAAACCCTTAAAAC
* *
175575 CCTAGAAA--ATTGAAAC
1 CCTAGAAACCCTTAAAAC
* *
175591 CCTTA-AAACAC-TAAAAT
1 CC-TAGAAACCCTTAAAAC
* *
175608 ACTAGAAACCCTAAAAAC
1 CCTAGAAACCCTTAAAAC
*
175626 CTTAGAAA-CCTTAGAAAC
1 CCTAGAAACCCTTA-AAAC
* *
175644 ACTTA-AAACCCTTACAAC
1 -CCTAGAAACCCTTAAAAC
175662 CCTA-AAACCCTTAGAAA-
1 CCTAGAAACCCTTA-AAAC
* *
175679 CATAGAAA-CCTTGTAAAC
1 CCTAGAAACCCTT-AAAAC
* *
175697 CCTACAAGCCC-TAAAACC
1 CCTAGAAACCCTTAAAA-C
*
175715 CCTA-AAATCCTTTAAAAC
1 CCTAGAAA-CCCTTAAAAC
175733 CCTAGAAACC
1 CCTAGAAACC
175743 TTAGAATCCT
Statistics
Matches: 258, Mismatches: 52, Indels: 64
0.69 0.14 0.17
Matches are distributed among these distances:
15 1 0.00
16 36 0.14
17 71 0.28
18 124 0.48
19 26 0.10
ACGTcount: A:0.48, C:0.30, G:0.04, T:0.17
Consensus pattern (18 bp):
CCTAGAAACCCTTAAAAC
Found at i:175833 original size:16 final size:16
Alignment explanation
Indices: 175812--175876 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 16
175802 AAAAATTCTA
175812 TAAAACCTATAAACCC
1 TAAAACCTATAAACCC
* *
175828 TAAAACCTTGTAAACCT
1 TAAAACC-TATAAACCC
*
175845 TGTAAACCT-TAATACCC
1 T-AAAACCTATAA-ACCC
175862 TATAAATCCTATAAA
1 TA-AAA-CCTATAAA
175877 TAATAGGTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
16 10 0.26
17 16 0.42
18 9 0.24
19 3 0.08
ACGTcount: A:0.45, C:0.25, G:0.03, T:0.28
Consensus pattern (16 bp):
TAAAACCTATAAACCC
Found at i:175841 original size:26 final size:26
Alignment explanation
Indices: 175809--175876 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
175799 CATAAAAATT
175809 CTATAAAACCTATAAACCCTAAAACC
1 CTATAAAACCTATAAACCCTAAAACC
* * * * *
175835 TTGT-AAACCTTGTAAACCTTAATACC
1 CTATAAAACC-TATAAACCCTAAAACC
*
175861 CTATAAATCCTATAAA
1 CTATAAAACCTATAAA
175877 TAATAGGTTT
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
25 5 0.16
26 22 0.71
27 4 0.13
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (26 bp):
CTATAAAACCTATAAACCCTAAAACC
Found at i:175842 original size:9 final size:9
Alignment explanation
Indices: 175830--175854 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
175820 ATAAACCCTA
175830 AAACCTTGT
1 AAACCTTGT
175839 AAACCTTGT
1 AAACCTTGT
175848 AAACCTT
1 AAACCTT
175855 AATACCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (9 bp):
AAACCTTGT
Found at i:175913 original size:18 final size:18
Alignment explanation
Indices: 175890--175925 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
175880 TAGGTTTTAG
175890 GGTTTTTAGGATTTCTAA
1 GGTTTTTAGGATTTCTAA
*
175908 GGTTTTTAGTATTTCTAA
1 GGTTTTTAGGATTTCTAA
175926 CATCTAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.06, G:0.19, T:0.53
Consensus pattern (18 bp):
GGTTTTTAGGATTTCTAA
Found at i:176004 original size:9 final size:9
Alignment explanation
Indices: 175986--176028 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
175976 AGGTTTAAGG
175986 TCTAGGGTT
1 TCTAGGGTT
*
175995 TCTAGTGTT
1 TCTAGGGTT
*
176004 TGTAGGGTT
1 TCTAGGGTT
* *
176013 TTTAGGTTT
1 TCTAGGGTT
176022 TCTAGGG
1 TCTAGGG
176029 CTTTTAGGTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.12, C:0.07, G:0.33, T:0.49
Consensus pattern (9 bp):
TCTAGGGTT
Found at i:176027 original size:18 final size:18
Alignment explanation
Indices: 175986--176040 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
175976 AGGTTTAAGG
*
175986 TCTAGGGTTTCTA-GTGTT
1 TCTAGGGTTTTTAGGT-TT
*
176004 TGTAGGGTTTTTAGGTTT
1 TCTAGGGTTTTTAGGTTT
*
176022 TCTAGGGCTTTTAGGTTT
1 TCTAGGGTTTTTAGGTTT
176040 T
1 T
176041 GGAAATTGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 30 0.94
19 2 0.06
ACGTcount: A:0.11, C:0.07, G:0.29, T:0.53
Consensus pattern (18 bp):
TCTAGGGTTTTTAGGTTT
Found at i:176036 original size:27 final size:26
Alignment explanation
Indices: 175988--176040 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
175978 GTTTAAGGTC
*
175988 TAGGGTTTCTAGTGTTTGTAGGGTTTT
1 TAGGGTTTCTAGGGTTTGTA-GGTTTT
*
176015 TAGGTTTTCTAGGGCTTT-TAGGTTTT
1 TAGGGTTTCTAGGG-TTTGTAGGTTTT
176041 GGAAATTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.26
27 14 0.61
28 3 0.13
ACGTcount: A:0.11, C:0.06, G:0.30, T:0.53
Consensus pattern (26 bp):
TAGGGTTTCTAGGGTTTGTAGGTTTT
Found at i:176243 original size:22 final size:22
Alignment explanation
Indices: 176212--176258 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
176202 CGTATTCCTT
* *
176212 TTTATTTTATT-TTATTTATTTA
1 TTTATATTATTATTA-TTATCTA
176234 TTTATATTATTATTATTATCTA
1 TTTATATTATTATTATTATCTA
176256 TTT
1 TTT
176259 TTAAGACATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTATATTATTATTATTATCTA
Found at i:179018 original size:7 final size:7
Alignment explanation
Indices: 179006--179034 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
178996 TCAGGGTTTA
179006 GGCTCGG
1 GGCTCGG
179013 GGCTCGG
1 GGCTCGG
179020 GGCTCGG
1 GGCTCGG
179027 GGCTCGG
1 GGCTCGG
179034 G
1 G
179035 TTTCGGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.59, T:0.14
Consensus pattern (7 bp):
GGCTCGG
Found at i:179040 original size:7 final size:7
Alignment explanation
Indices: 179030--179107 Score: 129
Period size: 7 Copynumber: 11.1 Consensus size: 7
179020 GGCTCGGGGC
179030 TCGGGTT
1 TCGGGTT
179037 TCGGGTT
1 TCGGGTT
179044 TCGGGTT
1 TCGGGTT
179051 TCGGGTT
1 TCGGGTT
179058 TCGGGTT
1 TCGGGTT
179065 TCGGGTT
1 TCGGGTT
179072 TCGGGTT
1 TCGGGTT
179079 TCGGGTT
1 TCGGGTT
*
179086 TAGGGTT
1 TCGGGTT
*
179093 TAGGGTT
1 TCGGGTT
*
179100 TAGGGTT
1 TCGGGTT
179107 T
1 T
179108 TTATAAAGTA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
7 70 1.00
ACGTcount: A:0.04, C:0.10, G:0.42, T:0.44
Consensus pattern (7 bp):
TCGGGTT
Found at i:179040 original size:21 final size:21
Alignment explanation
Indices: 179023--179086 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
179013 GGCTCGGGGC
179023 TCGGGGCTCGGGTTTCGGGTT
1 TCGGGGCTCGGGTTTCGGGTT
**
179044 TCGGGTTTCGGGTTTCGGGTT
1 TCGGGGCTCGGGTTTCGGGTT
**
179065 TCGGGTTTCGGGTTTCGGGTT
1 TCGGGGCTCGGGTTTCGGGTT
179086 T
1 T
179087 AGGGTTTAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.00, C:0.16, G:0.44, T:0.41
Consensus pattern (21 bp):
TCGGGGCTCGGGTTTCGGGTT
Found at i:179153 original size:29 final size:29
Alignment explanation
Indices: 179107--179162 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
179097 GTTTAGGGTT
* *
179107 TTTATAAAGTAATAAAAACATCAAATTAGA
1 TTTAAAAAGTAATAAAAA-ACCAAATTAGA
179137 TTTAAAAAG-AATAAAAAACCAAATTA
1 TTTAAAAAGTAATAAAAAACCAAATTA
179163 TATAAACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 8 0.33
30 8 0.33
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (29 bp):
TTTAAAAAGTAATAAAAAACCAAATTAGA
Found at i:180156 original size:9 final size:9
Alignment explanation
Indices: 180122--180156 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
180112 AGTTTTAAAG
*
180122 GTTTATATA
1 GTTTTTATA
*
180131 ATTTTTATA
1 GTTTTTATA
180140 GTTTTTATA
1 GTTTTTATA
180149 GTTTTTAT
1 GTTTTTAT
180157 GATTTCTAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (9 bp):
GTTTTTATA
Found at i:180161 original size:27 final size:27
Alignment explanation
Indices: 180088--180161 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
180078 GGTTATAAGG
* *
180088 TTTATAGGGTTTTAAGATTTTTAAAGT
1 TTTATAGGTTTTTATGATTTTTAAAGT
* * * *
180115 TTTAAAGGTTTATATAATTTTTATAGTT
1 TTTATAGGTTTTTATGATTTTTAAAG-T
180143 TTTATA-GTTTTTATGATTT
1 TTTATAGGTTTTTATGATTT
180162 CTAGGATTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 31 0.84
28 6 0.16
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (27 bp):
TTTATAGGTTTTTATGATTTTTAAAGT
Found at i:180215 original size:27 final size:27
Alignment explanation
Indices: 180185--180405 Score: 84
Period size: 27 Copynumber: 8.1 Consensus size: 27
180175 GGTTTCTTGA
*
180185 GTTTCTATAGTTTTTAAGGTTTTTAGG
1 GTTTCTATAGTTTTTAAGGTTTTTAAG
* * *
180212 GTTTCT-TGAGTTTCTATGGTTTGTAAG
1 GTTTCTAT-AGTTTTTAAGGTTTTTAAG
* * *
180239 ATTTTTA-AGTTTTT-AGGATTTTTAAT
1 GTTTCTATAGTTTTTAAGG-TTTTTAAG
* * * * *
180265 GTTTGT-TGGGGTTTTAGGGTTTAT-AG
1 GTTTCTAT-AGTTTTTAAGGTTTTTAAG
* *
180291 GATT-TATAAGATTTTTAGGGTTTGTTGTAAG
1 GTTTCTAT-AG-TTTTTAAGG-TT-TT-TAAG
* *
180322 GTTTGTA-AGATTTATTAA-ATTTTTAAG
1 GTTTCTATAG-TTT-TTAAGGTTTTTAAG
*
180349 GTTTCTATAGTTTGTAAGGTTTTT-AG
1 GTTTCTATAGTTTTTAAGGTTTTTAAG
* * * *
180375 AGTTTTTAGAGTTTATAAGATTTTT-AG
1 -GTTTCTATAGTTTTTAAGGTTTTTAAG
180402 GTTT
1 GTTT
180406 TGTAGGGTTT
Statistics
Matches: 145, Mismatches: 32, Indels: 35
0.68 0.15 0.17
Matches are distributed among these distances:
25 3 0.02
26 32 0.22
27 82 0.57
28 8 0.06
29 3 0.02
30 7 0.05
31 8 0.06
32 2 0.01
ACGTcount: A:0.22, C:0.02, G:0.23, T:0.53
Consensus pattern (27 bp):
GTTTCTATAGTTTTTAAGGTTTTTAAG
Found at i:180225 original size:45 final size:46
Alignment explanation
Indices: 180139--180259 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 46
180129 TAATTTTTAT
* * * * * *
180139 AGTTTTTATAGTTTTTATGATTTCTAGGATTTGTAGGGTTTCT-TG
1 AGTTTCTATAGTTTTTAAGGTTTTTAGGATTTCTAGAGTTTCTATG
* *
180184 AGTTTCTATAGTTTTTAAGGTTTTTAGGGTTTCTTGAGTTTCTATG
1 AGTTTCTATAGTTTTTAAGGTTTTTAGGATTTCTAGAGTTTCTATG
*
180230 -GTTTGTA-AGATTTTTAA-GTTTTTAGGATTT
1 AGTTTCTATAG-TTTTTAAGGTTTTTAGGATTT
180260 TTAATGTTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
44 14 0.22
45 48 0.75
46 2 0.03
ACGTcount: A:0.19, C:0.04, G:0.21, T:0.55
Consensus pattern (46 bp):
AGTTTCTATAGTTTTTAAGGTTTTTAGGATTTCTAGAGTTTCTATG
Found at i:180244 original size:36 final size:36
Alignment explanation
Indices: 180148--180245 Score: 124
Period size: 36 Copynumber: 2.7 Consensus size: 36
180138 TAGTTTTTAT
* * * *
180148 AGTTTTTATGATTTCTAGGATTTGTAGGGTTTCTTG
1 AGTTTCTATGGTTTCTAAGATTTTTAGGGTTTCTTG
* * *
180184 AGTTTCTATAGTTTTTAAGGTTTTTAGGGTTTCTTG
1 AGTTTCTATGGTTTCTAAGATTTTTAGGGTTTCTTG
*
180220 AGTTTCTATGGTTTGTAAGATTTTTA
1 AGTTTCTATGGTTTCTAAGATTTTTA
180246 AGTTTTTAGG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.18, C:0.05, G:0.22, T:0.54
Consensus pattern (36 bp):
AGTTTCTATGGTTTCTAAGATTTTTAGGGTTTCTTG
Found at i:180378 original size:18 final size:17
Alignment explanation
Indices: 180322--180379 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
180312 TTGTTGTAAG
*
180322 GTTTGTAAGATTTATTAA
1 GTTTGTAAGGTTT-TTAA
* * *
180340 ATTTTTAAGGTTTCTATA
1 GTTTGTAAGGTTTTTA-A
180358 GTTTGTAAGGTTTTTAGA
1 GTTTGTAAGGTTTTTA-A
180376 GTTT
1 GTTT
180380 TTAGAGTTTA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
17 2 0.06
18 29 0.94
ACGTcount: A:0.26, C:0.02, G:0.19, T:0.53
Consensus pattern (17 bp):
GTTTGTAAGGTTTTTAA
Found at i:180388 original size:18 final size:17
Alignment explanation
Indices: 180365--180406 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
180355 ATAGTTTGTA
180365 AGGTTTTT-AGAGTTTTT
1 AGGTTTTTAAGA-TTTTT
*
180382 AGAGTTTATAAGATTTTT
1 AG-GTTTTTAAGATTTTT
180400 AGGTTTT
1 AGGTTTT
180407 GTAGGGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 6 0.29
18 12 0.57
19 3 0.14
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (17 bp):
AGGTTTTTAAGATTTTT
Found at i:180415 original size:27 final size:27
Alignment explanation
Indices: 180332--180416 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
180322 GTTTGTAAGA
* *
180332 TTTATTAA-ATTTTTA-AGGTTTCTATAG
1 TTTA-TAAGATTTTTAGA-GTTTTTAGAG
* *
180359 TTTGTAAGGTTTTTAGAGTTTTTAGAG
1 TTTATAAGATTTTTAGAGTTTTTAGAG
*
180386 TTTATAAGATTTTTAG-GTTTTGTAGGG
1 TTTATAAGATTTTTAGAGTTTT-TAGAG
180413 TTTA
1 TTTA
180417 GGGTTATAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 8 0.17
27 39 0.81
28 1 0.02
ACGTcount: A:0.25, C:0.01, G:0.20, T:0.54
Consensus pattern (27 bp):
TTTATAAGATTTTTAGAGTTTTTAGAG
Found at i:181257 original size:31 final size:31
Alignment explanation
Indices: 181220--181282 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
181210 TATATTATAC
181220 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
1 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
181251 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
1 CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
181282 C
1 C
181283 CAACTAGTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.30, G:0.22, T:0.10
Consensus pattern (31 bp):
CACAGGGAAGCCTCTGTCAAACAAGCCAAAG
Found at i:184569 original size:7 final size:7
Alignment explanation
Indices: 183880--184568 Score: 1027
Period size: 7 Copynumber: 101.3 Consensus size: 7
183870 CCACATCTCA
183880 GGCTCGG
1 GGCTCGG
183887 GGCTCGG
1 GGCTCGG
183894 GGCTCGG
1 GGCTCGG
*
183901 GGCCCGG
1 GGCTCGG
*
183908 GG-TCCG
1 GGCTCGG
*
183914 GGCTTTGG
1 GGC-TCGG
*
183922 GGCTTGG
1 GGCTCGG
183929 GGCTCGG
1 GGCTCGG
183936 GGCTCGG
1 GGCTCGG
183943 GGCTCGG
1 GGCTCGG
183950 GGCTC-G
1 GGCTCGG
183956 GGCTCGG
1 GGCTCGG
183963 GGCTCGG
1 GGCTCGG
183970 GGCTCGG
1 GGCTCGG
183977 GGCTCGG
1 GGCTCGG
183984 GGCTCGG
1 GGCTCGG
183991 GGCTC-G
1 GGCTCGG
183997 GGCTC-G
1 GGCTCGG
184003 GGCTC-G
1 GGCTCGG
184009 GGCTC-G
1 GGCTCGG
184015 GGCTCGG
1 GGCTCGG
184022 GGCTCGG
1 GGCTCGG
184029 GGCTCGG
1 GGCTCGG
184036 GGCTCGG
1 GGCTCGG
184043 GGCTCGG
1 GGCTCGG
184050 GGCTCGG
1 GGCTCGG
184057 GGCTC-G
1 GGCTCGG
184063 GGCTC-G
1 GGCTCGG
184069 GGCTCGG
1 GGCTCGG
184076 GGCTCGG
1 GGCTCGG
184083 GGCTCGG
1 GGCTCGG
184090 GGCTC-G
1 GGCTCGG
184096 GGCTCGG
1 GGCTCGG
184103 GGCTCGG
1 GGCTCGG
184110 GGCTCGG
1 GGCTCGG
184117 GGCTC--
1 GGCTCGG
184122 GGCTCGG
1 GGCTCGG
184129 GGCTCGG
1 GGCTCGG
184136 GGCTCGG
1 GGCTCGG
184143 GGCTC-G
1 GGCTCGG
184149 GGCTCGG
1 GGCTCGG
184156 GGCTCGG
1 GGCTCGG
184163 GGCTCGG
1 GGCTCGG
184170 GGCTCGG
1 GGCTCGG
184177 GGCTC-G
1 GGCTCGG
184183 GGCTCGG
1 GGCTCGG
184190 GGCTCGG
1 GGCTCGG
184197 GGCTC-G
1 GGCTCGG
184203 GGCTCGG
1 GGCTCGG
184210 GGCTCGG
1 GGCTCGG
184217 GGCTCGG
1 GGCTCGG
184224 GGCTC-G
1 GGCTCGG
184230 GGCTC-G
1 GGCTCGG
184236 GGCTCGG
1 GGCTCGG
184243 GGCTC-G
1 GGCTCGG
184249 GGCTC-G
1 GGCTCGG
184255 GGCTCGG
1 GGCTCGG
184262 GGCTC-G
1 GGCTCGG
*
184268 GGCGCGG
1 GGCTCGG
184275 GGCTCGG
1 GGCTCGG
184282 GGCTCGG
1 GGCTCGG
184289 GGCTCGG
1 GGCTCGG
184296 GGCTCGG
1 GGCTCGG
184303 GGCTCGG
1 GGCTCGG
184310 GGCTCGG
1 GGCTCGG
184317 GGCTCGG
1 GGCTCGG
184324 GGCTCGG
1 GGCTCGG
184331 GGCTC-G
1 GGCTCGG
184337 GGCTCGG
1 GGCTCGG
184344 GGCTCGG
1 GGCTCGG
184351 GGCTCGG
1 GGCTCGG
184358 GGCTCGG
1 GGCTCGG
184365 GGCTCGG
1 GGCTCGG
184372 GGCTCGG
1 GGCTCGG
184379 GCCGCTCGG
1 G--GCTCGG
184388 GGCTCGG
1 GGCTCGG
184395 GGCTCGG
1 GGCTCGG
184402 GGCTCGG
1 GGCTCGG
184409 GGCTC-G
1 GGCTCGG
184415 GG-TCGG
1 GGCTCGG
*
184421 GGGTCGGGG
1 GGCTC--GG
184430 GGCTCGG
1 GGCTCGG
184437 GGCTC-G
1 GGCTCGG
184443 GGCTCGG
1 GGCTCGG
184450 GG-TCGG
1 GGCTCGG
*
184456 GGGTCGG
1 GGCTCGG
*
184463 GGGTCGG
1 GGCTCGG
184470 GG-TC-G
1 GGCTCGG
184475 GGCTCGG
1 GGCTCGG
184482 GGTCTCGG
1 GG-CTCGG
184490 GG-TCGG
1 GGCTCGG
184496 GGCTCGG
1 GGCTCGG
*
184503 GGGTCGG
1 GGCTCGG
184510 GGCTCGG
1 GGCTCGG
184517 GGCTCGG
1 GGCTCGG
184524 GGCTCGG
1 GGCTCGG
184531 GGCTCGG
1 GGCTCGG
184538 GGCTTCGG
1 GGC-TCGG
184546 GGCTCGG
1 GGCTCGG
*
184553 GGGTCGG
1 GGCTCGG
*
184560 GGGTCGG
1 GGCTCGG
184567 GG
1 GG
184569 GGTTTAGGGT
Statistics
Matches: 642, Mismatches: 12, Indels: 56
0.90 0.02 0.08
Matches are distributed among these distances:
5 10 0.02
6 133 0.21
7 467 0.73
8 19 0.03
9 13 0.02
ACGTcount: A:0.00, C:0.28, G:0.57, T:0.15
Consensus pattern (7 bp):
GGCTCGG
Found at i:184578 original size:7 final size:7
Alignment explanation
Indices: 184568--187765 Score: 4873
Period size: 7 Copynumber: 471.7 Consensus size: 7
184558 GGGGGTCGGG
184568 GGGTTTA
1 GGGTTTA
184575 GGG-TTA
1 GGGTTTA
184581 -GGTTTA
1 GGGTTTA
184587 GGGTTTA
1 GGGTTTA
184594 GGGTTTA
1 GGGTTTA
184601 GGGTTTA
1 GGGTTTA
184608 -GGTTTA
1 GGGTTTA
184614 GGG-TTA
1 GGGTTTA
184620 -GGTTTA
1 GGGTTTA
184626 GGGTTTA
1 GGGTTTA
184633 GGG-TT-
1 GGGTTTA
184638 GGGTTTA
1 GGGTTTA
184645 GGG-TTA
1 GGGTTTA
184651 GGGTTTA
1 GGGTTTA
184658 GGGTTTA
1 GGGTTTA
184665 GGGTTTA
1 GGGTTTA
184672 GGGTTTA
1 GGGTTTA
184679 GGGTTTA
1 GGGTTTA
184686 GGGTTTA
1 GGGTTTA
184693 GGGTTTA
1 GGGTTTA
184700 GGGTTTA
1 GGGTTTA
184707 GGGTTTA
1 GGGTTTA
*
184714 GGGTGGTTT
1 GGGT--TTA
184723 GGGTTTA
1 GGGTTTA
184730 GGGTTTA
1 GGGTTTA
184737 GGGTTTA
1 GGGTTTA
184744 GGTGTTTA
1 GG-GTTTA
184752 GGGTTTA
1 GGGTTTA
184759 GGGTTTA
1 GGGTTTA
184766 GGGTTTA
1 GGGTTTA
184773 GGGTTTA
1 GGGTTTA
184780 -GGTTTA
1 GGGTTTA
184786 GGGTTTA
1 GGGTTTA
184793 GGGTTTA
1 GGGTTTA
184800 GGGTTTA
1 GGGTTTA
184807 GGGTTTA
1 GGGTTTA
184814 GGGTTTA
1 GGGTTTA
184821 GGGTTTA
1 GGGTTTA
184828 GGGTTTA
1 GGGTTTA
184835 GGGTTTA
1 GGGTTTA
184842 GGGTTTA
1 GGGTTTA
184849 -GGTTTA
1 GGGTTTA
184855 GGGTTTA
1 GGGTTTA
184862 GGGTTTA
1 GGGTTTA
184869 GGGTTTA
1 GGGTTTA
184876 GGGTTTA
1 GGGTTTA
184883 -GGTTTA
1 GGGTTTA
184889 GGGTTTA
1 GGGTTTA
184896 GGGTTTA
1 GGGTTTA
184903 GGG-TTA
1 GGGTTTA
184909 GGGTTTA
1 GGGTTTA
184916 GGGTTTA
1 GGGTTTA
184923 -GGTTTA
1 GGGTTTA
* *
184929 GGTTTTTC
1 GG-GTTTA
184937 GGGTTTA
1 GGGTTTA
184944 GGGTTTA
1 GGGTTTA
184951 GGGTTTA
1 GGGTTTA
184958 GGGTTTA
1 GGGTTTA
184965 GGGTTTA
1 GGGTTTA
184972 GGGTTTA
1 GGGTTTA
184979 -GGTTTA
1 GGGTTTA
184985 GGGTTTA
1 GGGTTTA
184992 GGGTTTA
1 GGGTTTA
184999 GGGTTTA
1 GGGTTTA
185006 GGGTTTA
1 GGGTTTA
185013 GGGTTTA
1 GGGTTTA
185020 -GGTTT-
1 GGGTTTA
185025 -GGTTT-
1 GGGTTTA
*
185030 GGGTTTC
1 GGGTTTA
185037 GGGTTTA
1 GGGTTTA
185044 GGG-TTA
1 GGGTTTA
185050 GGGTTTA
1 GGGTTTA
185057 GGGTTTA
1 GGGTTTA
185064 GGGTTTA
1 GGGTTTA
185071 GGG-TTA
1 GGGTTTA
185077 GGG-TTA
1 GGGTTTA
185083 GGGTTTA
1 GGGTTTA
185090 GGGTTTA
1 GGGTTTA
185097 GGGTTTA
1 GGGTTTA
185104 GGGTTTA
1 GGGTTTA
185111 GGGTTTA
1 GGGTTTA
185118 GGGTTTA
1 GGGTTTA
185125 GGGTTTA
1 GGGTTTA
185132 GGGTTTA
1 GGGTTTA
185139 GGGTTT-
1 GGGTTTA
185145 GGGTTTA
1 GGGTTTA
185152 GGGTTTA
1 GGGTTTA
*
185159 GGGGTTA
1 GGGTTTA
185166 -GGTTTA
1 GGGTTTA
185172 -GGTTTA
1 GGGTTTA
*
185178 GGGTTTT
1 GGGTTTA
*
185185 GGGTTTC
1 GGGTTTA
185192 GGGTTT-
1 GGGTTTA
185198 GGGTTTA
1 GGGTTTA
185205 GGGTTTA
1 GGGTTTA
185212 GGGTTT-
1 GGGTTTA
185218 GGGTTTA
1 GGGTTTA
185225 GGG-TTA
1 GGGTTTA
185231 GGGTTTA
1 GGGTTTA
185238 GGG-TTA
1 GGGTTTA
185244 GGG-TTA
1 GGGTTTA
185250 GGGTTTA
1 GGGTTTA
185257 GGTTGGTTTA
1 -G--GGTTTA
185267 GGGTTTA
1 GGGTTTA
185274 GGGTTTA
1 GGGTTTA
185281 GGGTTTA
1 GGGTTTA
185288 GGGTTTA
1 GGGTTTA
185295 GGGTTTA
1 GGGTTTA
185302 GGG-TTA
1 GGGTTTA
185308 GGGTTTA
1 GGGTTTA
*
185315 GGG--TC
1 GGGTTTA
185320 GGGTTTA
1 GGGTTTA
185327 GGGTTTA
1 GGGTTTA
185334 GGGTTTA
1 GGGTTTA
185341 GGGTTTA
1 GGGTTTA
185348 GGGTTTA
1 GGGTTTA
185355 GGGTTTA
1 GGGTTTA
185362 GGGTTTA
1 GGGTTTA
*
185369 -GGTTTC
1 GGGTTTA
185375 GGGTTTA
1 GGGTTTA
185382 GGGTTTA
1 GGGTTTA
185389 -GGTTTA
1 GGGTTTA
185395 GGGTTTA
1 GGGTTTA
185402 GGGTTTA
1 GGGTTTA
185409 GGGTTT-
1 GGGTTTA
185415 GGGTTTA
1 GGGTTTA
185422 GGGTTT-
1 GGGTTTA
185428 GGGTTTA
1 GGGTTTA
185435 GGGTTTA
1 GGGTTTA
185442 -GGTTTA
1 GGGTTTA
185448 GGGTTTA
1 GGGTTTA
185455 GGGTTTA
1 GGGTTTA
185462 GGGTTTA
1 GGGTTTA
185469 GGGTTTA
1 GGGTTTA
185476 GGG--TA
1 GGGTTTA
185481 GGGTTTA
1 GGGTTTA
185488 -GGTTT-
1 GGGTTTA
185493 GGG--TA
1 GGGTTTA
185498 GGGTTTGGTA
1 GGG-TT--TA
185508 GGG-TTA
1 GGGTTTA
185514 GGGTTTA
1 GGGTTTA
185521 GGGGGTTTA
1 --GGGTTTA
185530 GGGTTTA
1 GGGTTTA
*
185537 GGGTTTC
1 GGGTTTA
*
185544 GGG-TTG
1 GGGTTTA
*
185550 GGGGTT-
1 GGGTTTA
185556 GGGTTTA
1 GGGTTTA
185563 GGGTTTA
1 GGGTTTA
*
185570 GGGTTGA
1 GGGTTTA
185577 GGGTTTA
1 GGGTTTA
185584 GGGTTTA
1 GGGTTTA
185591 GGGTTTA
1 GGGTTTA
185598 GGG-TTA
1 GGGTTTA
185604 GGGTTTA
1 GGGTTTA
185611 GGG-TTA
1 GGGTTTA
*
185617 GGGTTTG
1 GGGTTTA
**
185624 GGGTGGGA
1 GGGT-TTA
185632 GGGTTTA
1 GGGTTTA
185639 GGGTTTA
1 GGGTTTA
185646 GGGTTTA
1 GGGTTTA
*
185653 GGGGTTA
1 GGGTTTA
185660 GGGTTTA
1 GGGTTTA
185667 GGGTTTA
1 GGGTTTA
185674 -GGTTTA
1 GGGTTTA
185680 GGGGGTTTA
1 --GGGTTTA
185689 GGG-TTA
1 GGGTTTA
*
185695 GGGGGGTT-
1 --GGGTTTA
185703 GGGTTTA
1 GGGTTTA
185710 GGGTTTA
1 GGGTTTA
* *
185717 GGTTTTC
1 GGGTTTA
185724 GGG-TTA
1 GGGTTTA
185730 GGG-TT-
1 GGGTTTA
185735 GGGTTT-
1 GGGTTTA
185741 GGG--TA
1 GGGTTTA
185746 GGGTTTA
1 GGGTTTA
*
185753 -GG--TC
1 GGGTTTA
*
185757 GGGTTTC
1 GGGTTTA
*
185764 GGGTTTC
1 GGGTTTA
185771 GGGTTTA
1 GGGTTTA
185778 GGGTTTA
1 GGGTTTA
185785 GGGTTTA
1 GGGTTTA
185792 GGGTTTA
1 GGGTTTA
185799 GGGTTTA
1 GGGTTTA
185806 GGGTTTTGA
1 GGG-TTT-A
185815 GGGTTTTA
1 GGG-TTTA
185823 GGGTTTA
1 GGGTTTA
185830 GGGTTTA
1 GGGTTTA
185837 GGGTTTA
1 GGGTTTA
185844 GGGTTTA
1 GGGTTTA
185851 GGG-TTA
1 GGGTTTA
185857 GGGTTTA
1 GGGTTTA
*
185864 GGGTTTC
1 GGGTTTA
185871 GGGTTTA
1 GGGTTTA
185878 GGG-TTA
1 GGGTTTA
185884 GGGTTTA
1 GGGTTTA
185891 GGGTTTA
1 GGGTTTA
185898 GGGTTTA
1 GGGTTTA
185905 GGGTTTA
1 GGGTTTA
185912 GGGGTTTA
1 -GGGTTTA
185920 GGGTTTA
1 GGGTTTA
*
185927 GGGTGTA
1 GGGTTTA
185934 GGGTTTA
1 GGGTTTA
185941 GGGTTT-
1 GGGTTTA
185947 GGG-TTA
1 GGGTTTA
185953 GGGTTT-
1 GGGTTTA
185959 GGG-TT-
1 GGGTTTA
185964 GGGTTTA
1 GGGTTTA
185971 GGGTTT-
1 GGGTTTA
185977 GGGTTTA
1 GGGTTTA
185984 GGGTTTA
1 GGGTTTA
185991 GGGTTTA
1 GGGTTTA
185998 GGG-TTA
1 GGGTTTA
186004 GGGTTT-
1 GGGTTTA
186010 -GG-TTA
1 GGGTTTA
186015 GGGTTT-
1 GGGTTTA
186021 GGGTTTA
1 GGGTTTA
186028 GGGTTTA
1 GGGTTTA
186035 GGGTTTA
1 GGGTTTA
186042 GGGTTTA
1 GGGTTTA
186049 GGGTTTA
1 GGGTTTA
186056 GGGTTTA
1 GGGTTTA
186063 GGGTTTA
1 GGGTTTA
186070 GGGTTTA
1 GGGTTTA
186077 GGGTTTA
1 GGGTTTA
186084 GGGTTTTA
1 GGG-TTTA
186092 GGGTTTA
1 GGGTTTA
186099 GGGTTT-
1 GGGTTTA
186105 GGG-TTA
1 GGGTTTA
186111 GGGTTTA
1 GGGTTTA
186118 GGGTTT-
1 GGGTTTA
186124 GGGTTTA
1 GGGTTTA
186131 GGGTTT-
1 GGGTTTA
186137 -GGTTTA
1 GGGTTTA
186143 GGGTTTA
1 GGGTTTA
186150 GGGTTTA
1 GGGTTTA
186157 GGGTGTTTA
1 -GG-GTTTA
186166 GGGTTTA
1 GGGTTTA
186173 GGGTTT-
1 GGGTTTA
*
186179 CGGTTTA
1 GGGTTTA
186186 GGGTTTA
1 GGGTTTA
186193 GGGTTTA
1 GGGTTTA
186200 GGG-TTA
1 GGGTTTA
186206 GGGTTTA
1 GGGTTTA
186213 GGGTTTTA
1 GGG-TTTA
186221 GGGGTTTTA
1 -GGG-TTTA
186230 -GGTTTA
1 GGGTTTA
186236 GGGTTTA
1 GGGTTTA
186243 GGGTTTA
1 GGGTTTA
186250 GGGTTTA
1 GGGTTTA
186257 -GGTTTA
1 GGGTTTA
186263 GGGTTTA
1 GGGTTTA
186270 GGGTTTA
1 GGGTTTA
186277 GGGTTTA
1 GGGTTTA
*
186284 GGGGTTA
1 GGGTTTA
186291 GGGTTTA
1 GGGTTTA
186298 GGGTTTA
1 GGGTTTA
186305 GGGTTTA
1 GGGTTTA
186312 GGGTTTA
1 GGGTTTA
186319 GGG-TTA
1 GGGTTTA
186325 GGG-TTA
1 GGGTTTA
186331 GGGTTTA
1 GGGTTTA
186338 GGGTTTA
1 GGGTTTA
186345 --GTTTA
1 GGGTTTA
186350 GGG-TT-
1 GGGTTTA
186355 GGGTTTA
1 GGGTTTA
186362 GGGTTTA
1 GGGTTTA
186369 GGGTTTA
1 GGGTTTA
186376 -GGTTTA
1 GGGTTTA
186382 GGGTTTA
1 GGGTTTA
186389 GGGTTTA
1 GGGTTTA
186396 GGGTTTA
1 GGGTTTA
186403 GGGTTTA
1 GGGTTTA
186410 GGGTTTA
1 GGGTTTA
186417 GGGTTTTA
1 GGG-TTTA
186425 GGGTTTA
1 GGGTTTA
186432 GGGTTTA
1 GGGTTTA
186439 GGGTTTA
1 GGGTTTA
186446 -GGTTTA
1 GGGTTTA
186452 GGGTTTA
1 GGGTTTA
186459 -GGTTTA
1 GGGTTTA
186465 GGGTTTA
1 GGGTTTA
186472 GGGTTTA
1 GGGTTTA
186479 GGG-TT-
1 GGGTTTA
186484 -GGTTTA
1 GGGTTTA
186490 GGGTTTA
1 GGGTTTA
186497 GGGTTTA
1 GGGTTTA
186504 GGGTTTA
1 GGGTTTA
186511 GGGTTTA
1 GGGTTTA
186518 GGGTTTA
1 GGGTTTA
186525 GGGTTTA
1 GGGTTTA
186532 GGGTTTA
1 GGGTTTA
186539 GGGTTTA
1 GGGTTTA
186546 GGGTTTA
1 GGGTTTA
186553 -GGTTTA
1 GGGTTTA
186559 GGGTTTA
1 GGGTTTA
186566 GGGTTTA
1 GGGTTTA
186573 GGGTTTA
1 GGGTTTA
186580 GGGTTTA
1 GGGTTTA
186587 GGGTTTA
1 GGGTTTA
186594 GGGTTTA
1 GGGTTTA
186601 GGGTTTA
1 GGGTTTA
186608 GGGTTTA
1 GGGTTTA
186615 GGGTTTA
1 GGGTTTA
186622 GGGTTTA
1 GGGTTTA
186629 GGGTTTA
1 GGGTTTA
186636 GGGTTTA
1 GGGTTTA
186643 GGGTTTA
1 GGGTTTA
186650 GGG-TTA
1 GGGTTTA
186656 GGGTTTA
1 GGGTTTA
186663 -GGTTTA
1 GGGTTTA
186669 GGGTTTA
1 GGGTTTA
186676 GGG-TTA
1 GGGTTTA
186682 GGGTTTA
1 GGGTTTA
186689 GGGTTTA
1 GGGTTTA
186696 GGG-TTA
1 GGGTTTA
186702 GGGTTTA
1 GGGTTTA
186709 GGG-TTA
1 GGGTTTA
186715 -GG-TTA
1 GGGTTTA
186720 GGG-TTA
1 GGGTTTA
186726 GGGTTTA
1 GGGTTTA
186733 GGGTTTA
1 GGGTTTA
186740 GGGTTTA
1 GGGTTTA
186747 GGGTTTA
1 GGGTTTA
186754 GGGTTTA
1 GGGTTTA
186761 GGGTTTA
1 GGGTTTA
186768 GGGTTTA
1 GGGTTTA
186775 GGGTTTA
1 GGGTTTA
186782 GGGTTTA
1 GGGTTTA
186789 GGGTTTA
1 GGGTTTA
186796 GGG--TA
1 GGGTTTA
186801 GGGTTTA
1 GGGTTTA
186808 -GGTTTA
1 GGGTTTA
186814 GGGTTTA
1 GGGTTTA
186821 GGGTTTA
1 GGGTTTA
186828 -GGTTTA
1 GGGTTTA
186834 GGGTTT-
1 GGGTTTA
*
186840 CGGTTTA
1 GGGTTTA
186847 GGG-TTA
1 GGGTTTA
186853 GGGGTTTA
1 -GGGTTTA
186861 GGGTTTA
1 GGGTTTA
186868 GGGTTTA
1 GGGTTTA
186875 GGGTTTA
1 GGGTTTA
186882 GGGTTTA
1 GGGTTTA
186889 GGGTTTA
1 GGGTTTA
186896 GGGTTTA
1 GGGTTTA
186903 GGGTTTA
1 GGGTTTA
186910 GGGTTTA
1 GGGTTTA
186917 -GGTTTA
1 GGGTTTA
186923 GGGTTTA
1 GGGTTTA
186930 GGGTTTA
1 GGGTTTA
186937 GGG-TTA
1 GGGTTTA
*
186943 GGG-TTG
1 GGGTTTA
186949 GGGTTTA
1 GGGTTTA
186956 GGG-TTA
1 GGGTTTA
186962 GGGTTTA
1 GGGTTTA
186969 GGGTTTA
1 GGGTTTA
186976 GGGTTTA
1 GGGTTTA
186983 GGGTTTA
1 GGGTTTA
186990 GGGTTTA
1 GGGTTTA
186997 GGGTTTA
1 GGGTTTA
187004 GGGTTTA
1 GGGTTTA
187011 GGGTTTA
1 GGGTTTA
187018 GGGTTTA
1 GGGTTTA
187025 -GGTTTA
1 GGGTTTA
187031 GGGTTTA
1 GGGTTTA
187038 GGGTTTA
1 GGGTTTA
187045 GGGTTTA
1 GGGTTTA
187052 GGGTTTA
1 GGGTTTA
187059 -GGTTTA
1 GGGTTTA
187065 GGGTTTA
1 GGGTTTA
187072 GGGTTTA
1 GGGTTTA
187079 GGGTTTA
1 GGGTTTA
*
187086 GGGTGTA
1 GGGTTTA
187093 GGGTTTA
1 GGGTTTA
187100 GGGTTTA
1 GGGTTTA
187107 GGGTTTA
1 GGGTTTA
187114 GGGTTTA
1 GGGTTTA
*
187121 GGGTGTA
1 GGGTTTA
187128 GGGTTTA
1 GGGTTTA
187135 GGGTTTA
1 GGGTTTA
187142 GGGTTTA
1 GGGTTTA
187149 GGGTTTA
1 GGGTTTA
187156 GGGTTTA
1 GGGTTTA
*
187163 GGGTGTA
1 GGGTTTA
187170 GGGTTTA
1 GGGTTTA
187177 GGGTTTA
1 GGGTTTA
187184 GGGTTTA
1 GGGTTTA
187191 GGGTTTA
1 GGGTTTA
187198 GGGTTTA
1 GGGTTTA
187205 GGGTTTA
1 GGGTTTA
187212 GGGTTTA
1 GGGTTTA
187219 GGGTTTA
1 GGGTTTA
187226 GGGTTTA
1 GGGTTTA
187233 GGGTTT-
1 GGGTTTA
187239 GGGTTTA
1 GGGTTTA
187246 GGGTTTA
1 GGGTTTA
187253 -GGTTTA
1 GGGTTTA
187259 GGGTTTA
1 GGGTTTA
187266 GGGTTTA
1 GGGTTTA
187273 GGGTTTA
1 GGGTTTA
187280 GGGTTTA
1 GGGTTTA
187287 GGGTTTA
1 GGGTTTA
187294 GGGTTTA
1 GGGTTTA
187301 -GGTTTA
1 GGGTTTA
187307 GGGTTTA
1 GGGTTTA
187314 GGGTTTA
1 GGGTTTA
187321 GGGTTTA
1 GGGTTTA
187328 GGGTTTA
1 GGGTTTA
187335 -GGTTTA
1 GGGTTTA
187341 -GGTTTA
1 GGGTTTA
187347 GGGTTTA
1 GGGTTTA
187354 GGGTTTA
1 GGGTTTA
187361 GGGTTTA
1 GGGTTTA
187368 GGGTTTA
1 GGGTTTA
187375 GGGTTTA
1 GGGTTTA
187382 GGGTTTA
1 GGGTTTA
187389 GGGTTTA
1 GGGTTTA
*
187396 GGGTTTC
1 GGGTTTA
187403 GGG-TTA
1 GGGTTTA
187409 GGGTTTA
1 GGGTTTA
187416 GGGTTTA
1 GGGTTTA
187423 GGGTTTA
1 GGGTTTA
187430 GGGTTTA
1 GGGTTTA
187437 GGGTTTA
1 GGGTTTA
187444 GGGTTTA
1 GGGTTTA
187451 GGGTTTA
1 GGGTTTA
187458 -GGTTTA
1 GGGTTTA
187464 GGGTTTA
1 GGGTTTA
187471 GGGTTT-
1 GGGTTTA
187477 -GG-TTA
1 GGGTTTA
187482 -GGTTTA
1 GGGTTTA
187488 GGG-TTA
1 GGGTTTA
187494 GGGTTTA
1 GGGTTTA
187501 GGGTTTA
1 GGGTTTA
187508 GGGTTT-
1 GGGTTTA
187514 -GGTTT-
1 GGGTTTA
187519 -GGTTTA
1 GGGTTTA
*
187525 GGGTTTC
1 GGGTTTA
187532 GGGTTTA
1 GGGTTTA
187539 GGGTTTA
1 GGGTTTA
187546 GGGTTTA
1 GGGTTTA
187553 GGGTTTA
1 GGGTTTA
187560 -GGTTTA
1 GGGTTTA
187566 GGGTTTA
1 GGGTTTA
187573 GGGTTTA
1 GGGTTTA
187580 GGGTTTA
1 GGGTTTA
187587 GGGTTTA
1 GGGTTTA
187594 GGGTTTA
1 GGGTTTA
187601 GGGTTTTA
1 GGG-TTTA
187609 GGGTTTA
1 GGGTTTA
187616 GGGTTTA
1 GGGTTTA
187623 GGGTTTA
1 GGGTTTA
187630 GGGTTTA
1 GGGTTTA
187637 GGGTTTA
1 GGGTTTA
187644 GGGTTTA
1 GGGTTTA
187651 GGGTTTA
1 GGGTTTA
187658 GGGTTTA
1 GGGTTTA
*
187665 AGGTTTA
1 GGGTTTA
187672 GGGTTTA
1 GGGTTTA
187679 GGGTTTA
1 GGGTTTA
187686 GGGTTTA
1 GGGTTTA
187693 GGGTTTA
1 GGGTTTA
187700 -GGTTTA
1 GGGTTTA
187706 GGGTTTA
1 GGGTTTA
187713 GGGTTTA
1 GGGTTTA
187720 GGGTTTA
1 GGGTTTA
187727 GGGTTTA
1 GGGTTTA
187734 -GGTTTA
1 GGGTTTA
187740 GGGTTTA
1 GGGTTTA
187747 GGGTTTA
1 GGGTTTA
187754 GGGTTTA
1 GGGTTTA
187761 GGGTT
1 GGGTT
Statistics
Matches: 2986, Mismatches: 59, Indels: 292
0.89 0.02 0.09
Matches are distributed among these distances:
4 9 0.00
5 82 0.03
6 512 0.17
7 2262 0.76
8 67 0.02
9 43 0.01
10 11 0.00
ACGTcount: A:0.13, C:0.00, G:0.44, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Done.