genome.fa.s8763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008763.1 Hibiscus syriacus cultivar Beakdansim tig00111856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72938

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2844--3608	150	5.1	150	95	0	1350	35	16	15	32	1.90
3444--4423	465	2.1	466	92	0	1622	32	16	17	33	1.93
4060--4136	20	3.8	19	70	14	55	22	22	22	33	1.97
3444--4423	233	4.2	233	92	0	1602	32	16	17	33	1.93
5972--5998	6	4.5	6	100	0	54	29	0	0	70	0.88
12084--12156	12	6.1	12	71	25	57	34	0	1	64	1.02
12111--12140	8	3.8	8	100	0	60	33	0	0	66	0.92
12114--12150	8	4.4	9	93	6	53	35	0	0	64	0.94
12114--12166	25	2.1	25	82	6	63	32	0	0	67	0.91
12078--12164	17	5.4	16	71	22	58	33	0	1	65	1.00
14195--14254	6	10.0	6	88	0	75	30	5	36	28	1.78
14195--14254	18	3.3	18	90	0	84	30	5	36	28	1.78
14480--14558	34	2.4	33	81	16	92	26	7	8	56	1.56
20916--20970	26	2.1	26	100	0	110	20	14	29	36	1.92
22889--22916	14	2.0	14	100	0	56	21	0	28	50	1.49
23211--23578	54	7.1	47	72	14	171	29	18	19	32	1.96
23258--23574	54	5.9	54	86	1	429	28	19	20	32	1.97
23123--23574	108	4.3	107	80	7	467	28	19	19	32	1.96
23121--23590	162	3.0	161	84	3	587	28	18	19	32	1.96
23258--23704	54	8.2	54	82	4	420	29	17	20	31	1.96
23195--23701	108	4.7	106	78	8	426	30	17	19	32	1.95
23565--23775	55	3.8	55	91	1	325	33	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24198--24284	46	1.9	46	83	6	115	43	6	21	27	1.78
24265--24354	46	2.0	45	82	6	110	40	11	21	27	1.87
28698--29449	54	13.9	54	83	3	859	28	18	20	32	1.96
29362--29622	55	4.8	55	83	6	334	32	18	19	28	1.96
29345--29622	108	2.6	109	82	6	348	32	18	19	29	1.96
29895--30098	68	3.0	68	87	1	284	28	14	26	29	1.95
33704--33735	15	2.1	15	100	0	64	18	6	18	56	1.62
36012--36073	30	2.1	30	87	0	88	37	17	20	24	1.94
36074--36128	26	2.1	26	89	0	83	21	14	29	34	1.93
37530--37619	39	2.3	38	86	3	117	32	26	25	15	1.96
41087--41486	198	2.0	198	84	3	529	37	6	9	46	1.62
44461--44532	5	15.6	5	78	11	50	75	4	1	19	1.05
44457--44532	4	18.2	4	74	24	52	75	3	1	19	1.04
45243--45341	34	2.8	35	86	6	137	29	15	12	43	1.82
45890--46550	105	6.3	105	91	3	947	22	18	26	33	1.97
47226--47466	36	6.9	35	75	15	176	41	14	18	25	1.88
47946--47981	18	2.0	18	88	0	54	41	30	8	19	1.81
48372--48422	22	2.3	22	93	0	84	23	11	29	35	1.90
49056--49135	23	3.5	22	74	12	72	1	15	7	76	1.07
49070--49123	16	3.4	17	78	9	53	0	16	9	74	1.07
53595--53680	5	18.6	5	77	11	62	74	3	1	20	1.03
53590--53680	4	21.2	4	74	20	53	74	3	1	20	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54395--54495	34	2.9	35	85	11	143	27	16	12	42	1.85
57705--57742	20	1.9	20	88	0	58	34	15	18	31	1.92
61810--61978	39	4.3	39	83	3	180	34	22	25	17	1.96
64072--64279	104	2.0	104	100	0	416	13	29	25	31	1.94
65439--65476	20	1.9	20	94	0	67	39	18	18	23	1.92
65482--65566	20	4.2	20	83	8	109	30	27	15	27	1.96
65494--65622	40	3.2	40	76	9	136	30	23	13	32	1.93
65491--65623	20	6.6	20	73	13	85	32	22	13	31	1.93
66411--66444	12	2.8	12	90	0	50	55	29	0	14	1.40
66565--66611	24	2.0	24	91	0	76	25	21	19	34	1.96
66570--66623	24	2.2	24	93	0	90	20	18	20	40	1.91
68849--68895	12	3.9	12	82	0	58	53	25	4	17	1.62
68848--68882	6	5.8	6	86	0	52	60	20	2	17	1.49
69062--69117	29	1.9	29	92	0	94	30	16	21	32	1.95
69142--69192	20	2.5	20	83	0	75	15	21	21	41	1.90
69344--69373	13	2.4	12	94	5	51	60	16	0	23	1.36
69303--69411	50	2.2	50	89	0	164	55	16	1	26	1.52
70598--70701	21	5.0	21	81	4	113	24	17	36	22	1.94
70590--70701	42	2.7	42	88	1	163	24	16	37	21	1.94
70996--71035	21	1.9	21	94	0	71	37	27	12	22	1.90

Tables:   1

The End!