genome.fa.s8764.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008764.1 Hibiscus syriacus cultivar Beakdansim tig00111857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68921

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154--388	37	6.9	35	72	13	143	40	14	18	26	1.89
853--887	17	2.0	18	88	5	54	40	31	8	20	1.82
1270--1319	21	2.3	22	89	3	75	24	12	30	34	1.91
1934--1976	22	1.9	22	85	4	59	2	18	9	69	1.26
6411--6490	5	16.6	5	75	10	53	75	3	1	20	1.03
6406--6490	4	20.2	4	75	13	57	75	3	1	20	1.02
6449--6482	14	2.5	13	90	4	50	79	0	2	17	0.86
6403--6533	51	2.6	51	77	14	123	70	3	4	22	1.20
7190--7291	38	2.9	35	83	14	136	27	16	12	43	1.84
10474--10511	20	1.9	20	88	0	58	34	15	18	31	1.92
14548--14688	39	3.7	39	84	2	153	34	21	26	17	1.95
18149--18186	20	1.9	20	94	0	67	39	18	18	23	1.92
18192--18275	20	4.2	20	82	10	100	30	27	15	26	1.96
19114--19147	12	2.8	12	90	0	50	55	29	0	14	1.40
19268--19314	24	2.0	24	91	0	76	25	21	19	34	1.96
19273--19326	24	2.2	24	93	0	90	20	18	20	40	1.91
21553--21599	12	3.9	12	82	0	58	53	25	4	17	1.62
21552--21586	6	5.8	6	86	0	52	60	20	2	17	1.49
21766--21821	29	1.9	29	92	0	94	30	16	21	32	1.95
21846--21896	20	2.5	20	83	0	75	15	21	21	41	1.90
22048--22077	13	2.4	12	94	5	51	60	16	0	23	1.36
22007--22115	50	2.2	50	89	0	164	55	16	1	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23302--23413	21	5.3	21	81	0	125	23	16	37	22	1.94
23302--23414	42	2.7	42	90	0	172	23	16	37	22	1.94
23709--23748	21	1.9	21	94	0	71	37	27	12	22	1.90
29963--30004	16	2.5	16	88	7	57	64	9	11	14	1.50
32764--32833	20	3.5	20	92	1	115	51	17	17	14	1.77
33155--33213	22	2.7	22	86	0	91	20	18	42	18	1.90
33317--33354	20	2.0	20	84	5	51	44	13	15	26	1.83
33361--33411	20	2.5	20	96	0	93	17	11	25	45	1.83
33403--33469	21	3.2	21	93	0	116	38	17	23	19	1.93
36549--36577	11	2.7	11	94	5	51	31	6	31	31	1.84
36591--36646	11	5.1	11	95	0	103	48	0	51	0	1.00
41815--41849	15	2.2	16	90	5	54	28	5	5	60	1.43
41919--41964	21	2.2	21	80	7	58	50	8	2	39	1.46
47053--47182	37	3.6	36	76	4	100	26	18	13	41	1.88
47083--47176	36	2.6	37	77	1	100	27	20	13	38	1.90
47290--47632	134	2.6	134	82	1	418	30	30	14	25	1.95
47884--47915	3	10.7	3	100	0	64	31	0	0	68	0.90

Tables:   1

The End!