genome.fa.s8769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008769.1 Hibiscus syriacus cultivar Beakdansim tig00111870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106967

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8299--8391	45	2.1	45	100	0	186	27	25	8	37	1.85
19231--19284	29	1.9	27	85	7	72	51	1	3	42	1.30
20780--20820	2	20.5	2	100	0	82	51	0	0	48	1.00
21009--21045	16	2.3	16	90	0	56	45	5	2	45	1.40
23581--23620	20	1.9	22	85	10	57	75	0	12	12	1.06
24703--24810	35	3.1	35	86	2	137	37	0	19	42	1.58
49541--49951	74	5.6	75	74	17	203	42	4	7	45	1.53
49600--49950	38	9.6	37	74	16	200	42	4	7	46	1.51
49643--49769	64	2.0	64	96	0	236	42	4	7	44	1.54
49680--49733	26	2.1	26	92	0	90	42	3	5	48	1.44
49700--49950	74	3.3	73	79	11	229	43	5	6	44	1.53
49705--49950	112	2.2	112	86	7	329	43	4	6	45	1.52
51338--51380	22	2.0	22	86	9	61	18	4	2	74	1.10
53350--53394	19	2.4	19	92	3	74	11	13	8	66	1.44
56750--57599	84	10.2	82	77	5	735	29	23	21	25	1.99
56791--57592	166	4.8	163	90	2	959	30	23	21	25	1.99
57273--57534	82	3.2	82	73	8	305	32	18	21	27	1.97
58258--58603	37	9.6	37	72	18	182	42	4	7	45	1.51
58250--58593	64	4.8	73	76	17	291	42	4	7	45	1.52
58250--58561	38	8.8	35	74	18	213	42	4	7	45	1.52
58337--58390	26	2.1	26	92	0	90	42	3	5	48	1.44
58352--58517	35	4.7	35	80	11	171	44	5	6	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58363--58603	38	6.5	38	77	15	190	42	4	7	45	1.53
60980--61028	24	1.9	27	88	12	77	42	0	2	55	1.11
62382--62420	20	1.9	20	84	5	51	17	2	12	66	1.35
70820--70863	2	22.0	2	100	0	88	50	0	0	50	1.00
72830--73026	99	2.0	99	91	2	324	41	18	27	12	1.87
81312--81357	21	2.2	21	84	0	56	39	0	0	60	0.97
81574--81631	29	2.0	29	86	0	80	13	34	27	24	1.93
81729--81812	29	2.9	29	96	0	159	16	29	35	17	1.93
81842--81866	12	2.1	12	100	0	50	16	36	8	40	1.77
81884--81940	29	2.0	29	96	0	105	21	31	33	14	1.92
82928--82965	19	2.0	20	89	5	60	26	2	15	55	1.54
83530--83615	37	2.3	37	87	2	118	34	18	17	29	1.94
89352--89784	225	1.9	225	87	2	638	26	21	14	37	1.92
90852--91188	171	2.0	163	83	5	415	25	23	11	39	1.88
93891--93931	12	2.9	14	86	13	50	43	0	0	56	0.99
93885--93939	23	2.6	21	75	22	53	38	0	0	61	0.96
93885--93941	20	2.7	23	74	20	61	36	0	0	63	0.95
95005--95041	17	2.1	19	85	10	51	62	5	0	32	1.18
95367--95452	41	2.1	41	100	0	172	34	11	15	38	1.83
96756--96798	10	4.7	10	78	21	58	58	20	11	9	1.61
96760--96792	16	2.1	16	100	0	66	57	24	12	6	1.57
97773--97982	65	3.3	63	81	11	221	25	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98975--99018	21	2.1	21	82	0	52	31	15	43	9	1.79
106294--106342	19	2.7	17	84	9	53	26	20	28	24	1.99
106314--106523	65	3.2	64	80	12	241	26	19	24	30	1.98

Tables:   1

The End!