genome.fa.s877.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000877.1 Hibiscus syriacus cultivar Beakdansim tig00001707_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81994

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87--131	12	3.7	12	84	3	54	57	0	42	0	0.98
4223--4249	12	2.2	12	100	0	54	55	0	44	0	0.99
10083--10696	200	3.1	198	85	4	806	39	13	13	34	1.83
11192--11237	18	2.6	18	89	0	65	26	34	4	34	1.76
14886--15065	90	2.0	92	90	2	283	45	6	10	38	1.63
24008--24037	15	1.9	16	93	6	53	23	0	50	26	1.50
29139--29565	227	1.9	227	87	2	635	37	13	15	33	1.86
29349--30681	199	6.6	199	82	4	1461	36	12	16	34	1.86
29349--30681	397	3.3	396	81	6	1519	36	12	16	34	1.86
30054--30099	21	2.2	20	81	7	56	23	10	17	47	1.79
29365--30681	596	2.2	605	83	5	1633	36	11	16	35	1.85
30254--30309	21	2.7	21	97	0	103	19	7	25	48	1.74
30293--30677	201	1.9	198	80	3	450	38	12	15	33	1.85
31856--31898	13	3.2	13	90	9	61	48	0	0	51	1.00
35552--35579	14	2.0	14	100	0	56	50	14	7	28	1.69
39436--39490	25	2.2	24	78	15	60	47	3	5	43	1.44
44220--44250	16	1.9	16	93	0	53	6	9	64	19	1.45
54920--55109	6	31.7	6	99	0	362	33	15	33	17	1.91
55106--55249	6	24.0	6	100	0	288	50	0	16	33	1.46
59814--59880	34	1.9	34	82	14	84	20	13	17	47	1.81
61728--61806	3	26.3	3	100	0	158	32	0	0	67	0.91
63444--63652	30	7.1	29	77	8	136	17	12	8	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63444--63624	58	3.1	55	72	13	130	16	12	8	62	1.52
63936--63964	10	2.9	10	100	0	58	10	0	6	82	0.83
69221--69442	64	3.5	63	75	12	197	30	13	13	42	1.83
69221--69458	128	1.9	128	80	10	281	29	13	13	42	1.83
69355--69598	133	1.8	130	80	10	289	27	19	13	38	1.90
69417--69612	100	2.0	95	82	9	230	29	19	13	37	1.90
69531--69605	31	2.4	29	83	14	89	29	18	14	37	1.91
71172--71226	7	7.7	7	97	2	101	0	56	0	43	0.99
71801--71952	30	5.1	30	76	4	130	15	10	9	64	1.49
71843--71903	28	2.2	27	88	2	86	16	9	6	67	1.40
75017--75202	58	3.2	58	92	0	309	43	4	6	44	1.52
75075--75179	34	3.4	33	67	24	93	45	3	7	42	1.50
75274--75333	30	2.0	30	100	0	120	50	6	6	36	1.55
77097--77142	23	2.0	23	100	0	92	26	8	8	56	1.58
78006--78150	30	4.8	30	72	7	116	57	11	11	20	1.62

Tables:   1

The End!