genome.fa.s8771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008771.1 Hibiscus syriacus cultivar Beakdansim tig00111876_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169649

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5760--5810	19	2.7	19	85	8	70	25	15	35	23	1.94
5653--5812	65	2.5	65	84	5	200	28	16	26	29	1.97
6364--6403	18	2.1	20	86	9	57	22	17	10	50	1.76
10473--10887	229	1.8	229	87	3	620	34	21	7	36	1.83
23490--23522	16	1.9	18	88	11	52	69	0	27	3	1.03
24272--24919	105	6.2	105	91	3	974	33	26	18	21	1.96
26425--26498	15	4.6	15	77	15	60	29	5	2	62	1.31
26442--26498	15	3.7	15	79	13	62	31	1	3	63	1.22
26507--26533	2	13.5	2	100	0	54	51	0	0	48	1.00
26580--26629	26	1.9	26	83	0	64	28	4	4	64	1.30
27237--27617	193	2.0	194	87	0	548	31	12	11	43	1.79
28310--28362	22	2.4	22	93	0	88	30	20	1	47	1.61
30631--30859	114	2.0	114	97	0	431	23	18	20	36	1.95
32813--32860	25	1.9	25	83	8	62	52	2	2	43	1.24
33013--33099	40	2.2	37	75	15	86	51	3	1	43	1.26
32826--33209	184	2.1	185	86	3	537	44	3	6	45	1.46
39766--39878	58	1.9	59	81	1	138	35	18	7	38	1.78
45078--45119	16	2.7	16	81	3	50	54	0	2	42	1.13
45675--45731	28	2.0	28	93	0	96	33	10	17	38	1.84
48605--48764	65	2.5	65	86	5	218	28	17	23	30	1.97
48605--48812	65	3.2	64	77	13	212	27	17	24	30	1.97
51429--51509	23	3.6	23	77	11	87	24	22	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57036--57185	73	2.1	72	83	8	189	27	19	24	28	1.98
57516--57564	22	2.3	19	83	16	53	48	2	2	46	1.25
57633--57664	17	1.9	17	93	6	57	43	0	0	56	0.99
57653--57691	15	2.6	16	84	12	55	30	0	0	69	0.89
57653--57695	8	5.6	8	83	10	63	34	0	0	65	0.93
57665--57694	15	2.0	15	100	0	60	33	0	0	66	0.92
57692--57783	21	4.4	20	73	18	80	53	0	1	45	1.07
58361--58412	26	2.0	26	81	7	61	44	5	17	32	1.72
58769--58836	30	2.2	30	89	2	100	45	16	14	23	1.84
63798--63852	20	2.8	20	86	2	67	34	12	3	49	1.59
64316--64365	6	8.2	6	80	12	57	4	18	0	78	0.91
64316--64364	17	2.8	17	84	3	53	4	18	0	77	0.92
67513--67538	13	2.0	13	100	0	52	61	7	7	23	1.49
68044--68076	16	2.1	16	88	11	50	75	0	9	15	1.03
78150--78183	17	2.1	16	88	5	50	76	0	8	14	1.01
79692--79734	22	2.0	22	95	0	77	20	16	23	39	1.92
83528--83579	20	2.5	20	84	3	68	40	21	17	21	1.91
83621--83671	20	2.5	21	83	3	59	31	21	19	27	1.97
84428--84466	20	2.0	20	90	5	62	38	28	0	33	1.57
89793--89832	20	2.0	21	95	5	73	25	20	22	32	1.98
94596--94659	27	2.4	27	84	5	76	37	4	0	57	1.19
109513--109546	17	2.0	17	94	0	59	20	17	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109695--109733	21	1.9	21	94	5	71	25	12	23	38	1.90
120862--120943	29	2.8	29	94	1	137	32	14	9	42	1.79
125633--125714	29	2.8	29	94	1	137	32	14	9	42	1.79
128325--128367	2	21.5	2	100	0	86	48	0	0	51	1.00
129310--129342	17	1.9	17	93	0	57	45	15	18	21	1.85
129931--130006	3	25.3	3	100	0	152	32	0	0	67	0.91
133366--133440	35	2.1	35	95	0	132	33	26	29	10	1.90
133523--133609	24	3.7	23	81	4	93	39	18	14	27	1.90
133519--133609	47	1.9	48	81	2	112	38	18	15	27	1.91
136100--136139	12	3.2	12	93	6	71	15	25	45	15	1.84
136120--136195	18	4.6	18	79	17	92	13	19	50	17	1.78
136107--136190	31	2.7	31	92	1	143	14	20	48	16	1.80
136101--136173	13	5.3	13	78	18	85	16	20	46	16	1.84
141244--141271	11	2.5	11	100	0	56	78	0	0	21	0.75
141450--141480	15	2.0	16	93	6	55	58	9	6	25	1.54
142542--142593	7	7.9	7	80	8	56	75	1	3	19	1.06
142542--142589	26	1.9	25	87	8	71	75	2	4	18	1.07
142617--142946	35	9.3	34	75	14	215	42	7	5	44	1.56
142617--142946	36	9.3	35	74	16	193	42	7	5	44	1.56
144102--144274	90	1.9	90	94	2	303	29	20	19	30	1.97
146691--146736	16	2.9	16	96	0	83	26	43	6	23	1.78
147717--147812	34	2.7	36	73	19	94	70	0	10	18	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147774--147822	9	5.3	9	81	16	57	77	0	4	18	0.92
148056--148085	15	1.9	16	93	6	53	56	10	6	26	1.57
149164--149215	7	7.9	7	81	16	58	75	1	1	21	1.00
149147--149207	30	2.0	30	84	12	81	72	3	1	22	1.09
149183--149215	13	2.4	14	90	5	50	75	0	3	21	0.93
149659--149860	65	3.1	64	78	12	198	30	24	18	26	1.98
155269--155363	44	2.2	44	85	7	124	27	23	22	27	1.99
155269--155340	21	3.5	20	76	16	58	29	23	20	26	1.99
156925--156973	21	2.3	21	92	0	80	16	34	18	30	1.93
158918--159087	38	4.5	36	77	12	146	41	5	5	47	1.52
158988--159102	38	2.9	38	83	7	124	40	6	4	48	1.48

Tables:   1

The End!