Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008772.1 Hibiscus syriacus cultivar Beakdansim tig00111877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3098974
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 13 of 16
Found at i:2575871 original size:66 final size:67
Alignment explanation
Indices: 2575789--2575935 Score: 260
Period size: 67 Copynumber: 2.2 Consensus size: 67
2575779 AATTAATATT
2575789 TTATCTAAAGTTTAGGGTTAAATT-AAAAACTACCTCCATTTAATATCTTAATGACCAAAACATT
1 TTATCTAAAGTTTAGGGTTAAATTAAAAAACTACCTCCATTTAATATCTTAATGACCAAAACATT
2575853 AC
66 AC
*
2575855 TTATCTAAAGTTTAGGGTTAAATTAAAAAACTACCTCTATTTAATATCTTAATGACCAAAACATT
1 TTATCTAAAGTTTAGGGTTAAATTAAAAAACTACCTCCATTTAATATCTTAATGACCAAAACATT
2575920 AC
66 AC
* *
2575922 TTTTCTAAATTTTA
1 TTATCTAAAGTTTA
2575936 TGATCAAAAG
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
66 24 0.31
67 53 0.69
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (67 bp):
TTATCTAAAGTTTAGGGTTAAATTAAAAAACTACCTCCATTTAATATCTTAATGACCAAAACATT
AC
Found at i:2576340 original size:17 final size:17
Alignment explanation
Indices: 2576320--2576370 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
2576310 TAAGGGTATG
2576320 ATACATTTAGTTGTTA-A
1 ATACATTTAGTT-TTATA
2576337 ATACATTTATGTTTTATA
1 ATACATTTA-GTTTTATA
2576355 ATA-ATTTAGTCTTTAT
1 ATACATTTAGT-TTTAT
2576371 TGGGGGTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 2 0.06
17 22 0.71
18 7 0.23
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (17 bp):
ATACATTTAGTTTTATA
Found at i:2582978 original size:17 final size:17
Alignment explanation
Indices: 2582958--2583008 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
2582948 TAAGGGTATG
2582958 ATACATTTAGTTGTTA-A
1 ATACATTTAGTT-TTATA
2582975 ATACATTTATGTTTTATA
1 ATACATTTA-GTTTTATA
2582993 ATA-ATTTAGTCTTTAT
1 ATACATTTAGT-TTTAT
2583009 TGGGGGTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 2 0.06
17 22 0.71
18 7 0.23
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (17 bp):
ATACATTTAGTTTTATA
Found at i:2590310 original size:193 final size:193
Alignment explanation
Indices: 2589978--2590363 Score: 706
Period size: 193 Copynumber: 2.0 Consensus size: 193
2589968 TTTACAAATT
2589978 ATGAATTTAGAACTAGTTTTAATTAGTTCTAGGATGACTTATATCGGGCATTGATTGTTTGTTGG
1 ATGAATTTAGAACTAGTTTTAATTAGTTCTAGGATGACTTATATCGGGCATTGATTGTTTGTTGG
2590043 TTCTAAACTAGATTTTACTACCAATTTCGTCCAAAACAAACAATTTTTCAAAAAATTTTGGATTT
66 TTCTAAACTAGATTTTACTACCAATTTCGTCCAAAACAAACAATTTTTCAAAAAATTTTGGATTT
*
2590108 TGAAACTT-AAAAAAAAA-ATA-TAGTAAGATTTTTGATTTAATTGTTTTTGTTTTCATGAAAA
131 CGAAACTTAAAAAAAAAATATATTAGTAAGATTTTTGA-TTAATTGTTTTTGTTTTCATGAAAA
*
2590169 ATGATTTTAGAACTAGTTTTAATTAGTTCTAGGATGTACATTATATCGGGCATTGATTGTTTGTT
1 ATGAATTTAGAACTAGTTTTAATTAGTTCTAGGATG-AC-TTATATCGGGCATTGATTGTTTGTT
2590234 GGTTCTAAACTAGATTTTACTACCAATTTCGTCCAAAACAAACAATTTTTCAAAAAATTTTGGAT
64 GGTTCTAAACTAGATTTTACTACCAATTTCGTCCAAAACAAACAATTTTTCAAAAAATTTTGGAT
2590299 TTCGAAACTTAAAAAAAAAATATATTAGTAAGATTTTTGATTAATTGTTTTTGTTTTCATGAAAA
129 TTCGAAACTTAAAAAAAAAATATATTAGTAAGATTTTTGATTAATTGTTTTTGTTTTCATGAAAA
2590364 CTATATTATT
Statistics
Matches: 188, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
191 35 0.19
192 2 0.01
193 99 0.53
194 9 0.05
195 28 0.15
196 15 0.08
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.41
Consensus pattern (193 bp):
ATGAATTTAGAACTAGTTTTAATTAGTTCTAGGATGACTTATATCGGGCATTGATTGTTTGTTGG
TTCTAAACTAGATTTTACTACCAATTTCGTCCAAAACAAACAATTTTTCAAAAAATTTTGGATTT
CGAAACTTAAAAAAAAAATATATTAGTAAGATTTTTGATTAATTGTTTTTGTTTTCATGAAAA
Found at i:2591444 original size:21 final size:21
Alignment explanation
Indices: 2591402--2591445 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
2591392 ACTCCGGGAG
* *
2591402 CTAGTTCCTCTCGAGCTGCTC
1 CTAGCTCCTCTCGAGCTCCTC
**
2591423 CTAGCTCCTCTCGTTCTCCTC
1 CTAGCTCCTCTCGAGCTCCTC
2591444 CT
1 CT
2591446 CCTCCTCCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.43, G:0.14, T:0.36
Consensus pattern (21 bp):
CTAGCTCCTCTCGAGCTCCTC
Found at i:2592638 original size:60 final size:63
Alignment explanation
Indices: 2592563--2592700 Score: 169
Period size: 60 Copynumber: 2.2 Consensus size: 63
2592553 GAATTAAATT
* *
2592563 GAACATCAAATGCATTCCATGGATCGATG-CCA-CCATGCACCGATGCACT-GAGG-ATTTTAA
1 GAACATCGAATGCATTCCATGCATCGATGACCAGCCATGCACCGATGCACTCG-GGCATTTTAA
** *
2592623 GAACATCGAATGCATTTGATGCATCGATGCACCAGCCATGCATCGATGCACTCGGGCTATTTTAA
1 GAACATCGAATGCATTCCATGCATCGATG-ACCAGCCATGCACCGATGCACTCGGGC-ATTTTAA
2592688 -AACATCGAATGCA
1 GAACATCGAATGCA
2592701 CATGATGCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
60 25 0.37
62 3 0.04
63 18 0.27
64 14 0.21
65 7 0.10
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (63 bp):
GAACATCGAATGCATTCCATGCATCGATGACCAGCCATGCACCGATGCACTCGGGCATTTTAA
Found at i:2592707 original size:64 final size:63
Alignment explanation
Indices: 2592595--2592718 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 63
2592585 ATCGATGCCA
**
2592595 CCATGCACCGATGCACTGAGGATTTTAAGAACATCGAATGCATTTGATGCATCGATGCACCAG
1 CCATGCACCGATGCACTGAGGATTTTAAGAACATCGAATGCACATGATGCATCGATGCACCAG
*
2592658 CCATGCATCGATGCACTCG-GGCTATTTTAA-AACATCGAATGCACATGATGCATCGATGCAC
1 CCATGCACCGATGCACT-GAGG--ATTTTAAGAACATCGAATGCACATGATGCATCGATGCAC
2592719 TCTTAGTGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
63 18 0.33
64 30 0.55
65 7 0.13
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (63 bp):
CCATGCACCGATGCACTGAGGATTTTAAGAACATCGAATGCACATGATGCATCGATGCACCAG
Found at i:2592734 original size:64 final size:61
Alignment explanation
Indices: 2592585--2592738 Score: 165
Period size: 64 Copynumber: 2.5 Consensus size: 61
2592575 CATTCCATGG
**
2592585 ATCGATGCCACCA--TGCACCGATGCACTGAGGATTTTAAGAACATCGAATGCATTTGATGC
1 ATCGATG-CACCAGCTGCACCGATGCACTGAGGATTTTAAGAACATCGAATGCACATGATGC
*
2592645 ATCGATGCACCAGCCATGCATCGATGCACTCG-GGCTATTTTAA-AACATCGAATGCACATGATG
1 ATCGATGCACCAG-C-TGCACCGATGCACT-GAGG--ATTTTAAGAACATCGAATGCACATGATG
2592708 C
61 C
2592709 ATCGATGCACTCTTAG-TGCACCGATGCACT
1 ATCGATGCAC-C--AGCTGCACCGATGCACT
2592739 AAGGTTCCAA
Statistics
Matches: 80, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
59 5 0.06
60 7 0.09
63 15 0.19
64 43 0.54
65 8 0.10
67 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (61 bp):
ATCGATGCACCAGCTGCACCGATGCACTGAGGATTTTAAGAACATCGAATGCACATGATGC
Found at i:2595113 original size:16 final size:16
Alignment explanation
Indices: 2595092--2595128 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
2595082 ACCTGACCCG
2595092 AAAAAATAAATTTTAA
1 AAAAAATAAATTTTAA
* *
2595108 AAAAAATCATTTTTAA
1 AAAAAATAAATTTTAA
2595124 AAAAA
1 AAAAA
2595129 TAGGTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAAATAAATTTTAA
Found at i:2596678 original size:10 final size:8
Alignment explanation
Indices: 2596649--2596679 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
2596639 TTGAGGTGGA
2596649 GGAGAGAT
1 GGAGAGAT
2596657 -GAGAGAT
1 GGAGAGAT
2596664 GGAGAGAT
1 GGAGAGAT
2596672 GGAGAGAT
1 GGAGAGAT
2596680 AAGGGGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.39, C:0.00, G:0.48, T:0.13
Consensus pattern (8 bp):
GGAGAGAT
Found at i:2598118 original size:12 final size:12
Alignment explanation
Indices: 2598101--2598126 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2598091 AGGTTTAATG
2598101 TTATTTTATTTT
1 TTATTTTATTTT
2598113 TTATTTTATTTT
1 TTATTTTATTTT
2598125 TT
1 TT
2598127 TTTGAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTATTTTATTTT
Found at i:2607974 original size:17 final size:17
Alignment explanation
Indices: 2607929--2607975 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
2607919 GGTATGATAC
2607929 ATTTAGTTGTTA-AATAT
1 ATTTAGTT-TTATAATAT
2607946 ATTTATGTTTTATAATA-
1 ATTTA-GTTTTATAATAT
2607963 ATTTAGTCTTTAT
1 ATTTAGT-TTTAT
2607976 TGGGGTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.07
17 18 0.67
18 7 0.26
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (17 bp):
ATTTAGTTTTATAATAT
Found at i:2610177 original size:17 final size:18
Alignment explanation
Indices: 2610155--2610198 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
2610145 ATAAGGTATG
2610155 ATACATTTAGTTGTTA-A
1 ATACATTTAGTTGTTATA
*
2610172 ATACATTTA-TTTTTATA
1 ATACATTTAGTTGTTATA
2610189 ATA-ATTTAGT
1 ATACATTTAGT
2610199 CTTTATTGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (18 bp):
ATACATTTAGTTGTTATA
Found at i:2611182 original size:16 final size:18
Alignment explanation
Indices: 2611158--2611190 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2611148 TTTTAACTGA
2611158 ACACTCAACCAA-ACTCT
1 ACACTCAACCAAGACTCT
2611175 ACAC-CAACCAAGACTC
1 ACACTCAACCAAGACTC
2611191 AAAACACCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.42, G:0.03, T:0.12
Consensus pattern (18 bp):
ACACTCAACCAAGACTCT
Found at i:2612241 original size:17 final size:18
Alignment explanation
Indices: 2612219--2612258 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
2612209 CGATTTTAGA
*
2612219 TTTTTTATATTG-TTTAT
1 TTTTTTATAATGTTTTAT
2612236 TTTTTTATAATGTTTTAT
1 TTTTTTATAATGTTTTAT
2612254 TTTTT
1 TTTTT
2612259 CTGATCCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (18 bp):
TTTTTTATAATGTTTTAT
Found at i:2614113 original size:274 final size:272
Alignment explanation
Indices: 2613631--2614143 Score: 630
Period size: 274 Copynumber: 1.9 Consensus size: 272
2613621 ACATGGATGA
** *
2613631 GGATCAAATTGAAACAATTATAAAATGTGAAATTGAAATTAATATAAAAATTGACTAAATCATAT
1 GGATCAAATCAAAACAATTATAAAATGTGAAATTGAAATTAATATAAAAATGGACTAAATCATAT
* * * * *
2613696 CCATATATAAAGTGGTGAACAAAAGTTTATAGGCTTTGGAGATTATGATATAATTTATAGTGTTT
66 CCATATAAAAACTGGAGAACAAAAATTTATAGGCTTTAGAGATTATGATATAATTTATAGTGTTT
* *
2613761 GAAATGAAGTTTATGATTGATTTATAGGGTTTGGAGTAATTACAAAAATAAATAAGTATGGATTA
131 GAAATGAAGTTTATGATTGATTTATAGGGTTTGGAGTAACTACAAAAATAAATAAGTATGGAGTA
** * * * *
2613826 ATTTTAGATAAAAATATAATTTAAGGCCCTAGTTGAATAAATATGAAATTACAAATTGAAAAAAA
196 ATTCCAAAT-AAAA-ATAATTTAAGG-ACTAATTGAATAAACATGAAATTACAAATTGAAAAAAA
2613891 ATTAAACTCACGTAG
258 ATTAAACTCACGTAG
*
2613906 GGATCAAATCAAAATAATTAT-AAATGTGAAGA-TGAAATTAATAT-AAAATGGACTAAATTGCA
1 GGATCAAATCAAAACAATTATAAAATGTGAA-ATTGAAATTAATATAAAAATGGACTAAA-T-CA
* * * *
2613968 T-T-CATTTAAAAACTTGAGAACAAAAATTTATAAGGTTTTAGAGATTGTGATATAATTTATAG-
63 TATCCATATAAAAACTGGAGAACAAAAATTTAT-AGGCTTTAGAGATTATGATATAATTTATAGT
* * * *
2614030 GATTTGAAA-GATGTTTTTGATGTGA-TTATAGGGTTTGGATTAAACTATAAAATATAAATAAGT
127 G-TTTGAAATGAAGTTTATGAT-TGATTTATAGGGTTTGGAGT-AACTACAAAA-ATAAATAAGT
*
2614093 AT-GAGTCATTCCAAATAAAAATAATTTAAGGACTAATTGAATAAACATGAA
188 ATGGAGTAATTCCAAATAAAAATAATTTAAGGACTAATTGAATAAACATGAA
2614144 TTATTGTAAC
Statistics
Matches: 204, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
271 17 0.08
272 11 0.05
273 65 0.32
274 77 0.38
275 34 0.17
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.34
Consensus pattern (272 bp):
GGATCAAATCAAAACAATTATAAAATGTGAAATTGAAATTAATATAAAAATGGACTAAATCATAT
CCATATAAAAACTGGAGAACAAAAATTTATAGGCTTTAGAGATTATGATATAATTTATAGTGTTT
GAAATGAAGTTTATGATTGATTTATAGGGTTTGGAGTAACTACAAAAATAAATAAGTATGGAGTA
ATTCCAAATAAAAATAATTTAAGGACTAATTGAATAAACATGAAATTACAAATTGAAAAAAAATT
AAACTCACGTAG
Found at i:2616598 original size:118 final size:120
Alignment explanation
Indices: 2616386--2616627 Score: 380
Period size: 118 Copynumber: 2.0 Consensus size: 120
2616376 TGGTTACCTC
2616386 ATCATATTGAAAATAGTTTCATTGCATGTCAAAGGATGAAATTTATTCAGCTTGAGGAGCAAAAA
1 ATCATATTGAAAATAGTTTCATTGCATGTC-AA-GATGAAATTTATTCAGCTTGAGGAGCAAAAA
* * *
2616451 TGGAAGCCTACGCTATTTTTGGTTCGTAAATGTACAGTTTCTAGGACTCGGGACTAA
64 TGGAAGCCTACACCATTTTTGGTTCGTAAATGTACAGTTTCTAGAACTCGGGACTAA
* *
2616508 ATCATATTGAAAATAGTTTTATTGCTTGTC-A-ATGAAATTTATTCAGCTTGAGGAGCAAAAATG
1 ATCATATTGAAAATAGTTTCATTGCATGTCAAGATGAAATTTATTCAGCTTGAGGAGCAAAAATG
* **
2616571 GCAGCCTACACCATTTTTGGTTCGTAAATGTACAGTTTCTAGAACTTTGGACTAA
66 GAAGCCTACACCATTTTTGGTTCGTAAATGTACAGTTTCTAGAACTCGGGACTAA
2616626 AT
1 AT
2616628 TAAACGAGAC
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
118 83 0.74
120 1 0.01
122 28 0.25
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (120 bp):
ATCATATTGAAAATAGTTTCATTGCATGTCAAGATGAAATTTATTCAGCTTGAGGAGCAAAAATG
GAAGCCTACACCATTTTTGGTTCGTAAATGTACAGTTTCTAGAACTCGGGACTAA
Found at i:2620292 original size:20 final size:20
Alignment explanation
Indices: 2620248--2620548 Score: 207
Period size: 20 Copynumber: 14.9 Consensus size: 20
2620238 AATGACCAAC
2620248 AAAATCGCAACGCGATATC--
1 AAAATCGCAACGCGAT-TCAG
*
2620267 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTCAG
* **
2620287 AAAATCGCAACGTTGA-AAAG
1 AAAATCGCAACG-CGATTCAG
*
2620307 AAAATCGCAACG-G--TCAAAAT
1 AAAATCGCAACGCGATTC---AG
2620327 AAAATCGCAACGCGATCTTCCA-
1 AAAATCGCAACGCGA--TT-CAG
* * *
2620349 AGAATCGCAATGCGATCCA-
1 AAAATCGCAACGCGATTCAG
*
2620368 AAGAATCGCAATGCGATTCCA-
1 AA-AATCGCAACGCGATT-CAG
* * *
2620389 AGAAGCGCAATGCGATCTTC-G
1 AAAATCGCAACGCGA--TTCAG
*
2620410 AAGAATCGCAATGCGATTCA-
1 AA-AATCGCAACGCGATTCAG
2620430 AAGAATCGCAACGCGA-TCGAG
1 AA-AATCGCAACGCGATTC-AG
2620451 AAAATCGCAACGCGATTCCA-
1 AAAATCGCAACGCGATT-CAG
* *
2620471 ATAATCGCAACGCGATTGAG
1 AAAATCGCAACGCGATTCAG
2620491 AAAATCGCAACGCGATTCA-
1 AAAATCGCAACGCGATTCAG
*
2620510 AAGAATCGCAACGCGATTGAG
1 AA-AATCGCAACGCGATTCAG
2620531 AAAATCGCAACGCGATTC
1 AAAATCGCAACGCGATTC
2620549 CAAGAATCGC
Statistics
Matches: 233, Mismatches: 23, Indels: 51
0.76 0.07 0.17
Matches are distributed among these distances:
18 2 0.01
19 24 0.10
20 162 0.70
21 14 0.06
22 28 0.12
23 1 0.00
25 1 0.00
26 1 0.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.17
Consensus pattern (20 bp):
AAAATCGCAACGCGATTCAG
Found at i:2620378 original size:62 final size:60
Alignment explanation
Indices: 2620309--2620560 Score: 185
Period size: 62 Copynumber: 4.1 Consensus size: 60
2620299 TTGAAAAGAA
2620309 AATCGCAACG-GTCAAAATAAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATCCAAAG
1 AATCGCAACGAGTC--AA-AAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATCCAAAG
* * * * * * *
2620371 AATCGCAATGCGATTCCAAGAAGCGCAATGCGATCTTCGAAGAATCGCAATGCGATTCAAAG
1 AATCGCAA--CGAGTCAAAAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATCCAAAG
* * * * **
2620433 AATCGCAACGCGATCGAGAAAATCGCAACGCGA--TTCCAATAATCGCAACGCGATTGAGAA-
1 AATCGCAACGAG-TC-AAAAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATCCA-AAG
* * *** *
2620493 AATCGCAACGCGATTCAAAGAATCGCAACGCGAT-TGAGAA-AATCGCAACGCGATTCC-AAG
1 AATCGCAA--CGAGTCAAAAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGA-TCCAAAG
2620553 AATCGCAA
1 AATCGCAA
2620561 AACGGCAAAA
Statistics
Matches: 152, Mismatches: 27, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
59 2 0.01
60 66 0.43
61 10 0.07
62 69 0.45
63 1 0.01
64 2 0.01
65 2 0.01
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (60 bp):
AATCGCAACGAGTCAAAAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATCCAAAG
Found at i:2620399 original size:40 final size:40
Alignment explanation
Indices: 2620248--2620560 Score: 305
Period size: 40 Copynumber: 7.8 Consensus size: 40
2620238 AATGACCAAC
**
2620248 AAAATCGCAACGCGATAT-CAA-AATCGCAACGCGATTTAG
1 AAAATCGCAACGCGAT-TCCAAGAATCGCAACGCGATCGAG
* **** * *
2620287 AAAATCGCAACGTTGAAAAGAA-AATCGCAACG-G-TCAAAAT
1 AAAATCGCAACG-CGATTCCAAGAATCGCAACGCGATC--GAG
* *
2620327 AAAATCGCAACGCGATCTTCCAAGAATCGCAATGCGATCCA-
1 AAAATCGCAACGCGA--TTCCAAGAATCGCAACGCGATCGAG
* * * **
2620368 AAGAATCGCAATGCGATTCCAAGAAGCGCAATGCGATCTTCG
1 AA-AATCGCAACGCGATTCCAAGAATCGCAACGCGATC-GAG
* *
2620410 AAGAATCGCAATGCGATTCAAAGAATCGCAACGCGATCGAG
1 AA-AATCGCAACGCGATTCCAAGAATCGCAACGCGATCGAG
* *
2620451 AAAATCGCAACGCGATTCCAATAATCGCAACGCGATTGAG
1 AAAATCGCAACGCGATTCCAAGAATCGCAACGCGATCGAG
* *
2620491 AAAATCGCAACGCGATTCAAAGAATCGCAACGCGATTGAG
1 AAAATCGCAACGCGATTCCAAGAATCGCAACGCGATCGAG
2620531 AAAATCGCAACGCGATTCCAAGAATCGCAA
1 AAAATCGCAACGCGATTCCAAGAATCGCAA
2620561 AACGGCAAAA
Statistics
Matches: 232, Mismatches: 30, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.00
39 15 0.06
40 149 0.64
41 7 0.03
42 57 0.25
43 1 0.00
44 2 0.01
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (40 bp):
AAAATCGCAACGCGATTCCAAGAATCGCAACGCGATCGAG
Found at i:2620556 original size:20 final size:20
Alignment explanation
Indices: 2620329--2620560 Score: 229
Period size: 20 Copynumber: 11.4 Consensus size: 20
2620319 GTCAAAATAA
2620329 AATCGCAACGCGATCTTCCAAG
1 AATCGCAACGCGA--TTCCAAG
*
2620351 AATCGCAATGCGA-TCCAAAG
1 AATCGCAACGCGATTCC-AAG
*
2620371 AATCGCAATGCGATTCCAAG
1 AATCGCAACGCGATTCCAAG
* * *
2620391 AAGCGCAATGCGATCTTCGAAG
1 AATCGCAACGCGA--TTCCAAG
* *
2620413 AATCGCAATGCGATTCAAAG
1 AATCGCAACGCGATTCCAAG
* *
2620433 AATCGCAACGCGA-TCGAGAA
1 AATCGCAACGCGATTCCA-AG
*
2620453 AATCGCAACGCGATTCCAAT
1 AATCGCAACGCGATTCCAAG
* *
2620473 AATCGCAACGCGATT-GAGAA
1 AATCGCAACGCGATTCCA-AG
*
2620493 AATCGCAACGCGATTCAAAG
1 AATCGCAACGCGATTCCAAG
* *
2620513 AATCGCAACGCGATT-GAGAA
1 AATCGCAACGCGATTCCA-AG
2620533 AATCGCAACGCGATTCCAAG
1 AATCGCAACGCGATTCCAAG
2620553 AATCGCAA
1 AATCGCAA
2620561 AACGGCAAAA
Statistics
Matches: 182, Mismatches: 18, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
19 8 0.04
20 136 0.75
21 8 0.04
22 30 0.16
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (20 bp):
AATCGCAACGCGATTCCAAG
Found at i:2620681 original size:6 final size:6
Alignment explanation
Indices: 2620670--2620812 Score: 251
Period size: 6 Copynumber: 24.7 Consensus size: 6
2620660 AGACACGTAT
2620670 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
2620718 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
2620766 GACCAC GACCAC GACCAC GACC-C GACC-C GACC-C GACC-C GACC-C
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
2620809 GACC
1 GACC
2620813 CGAGACGAGA
Statistics
Matches: 137, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 25 0.18
6 112 0.82
ACGTcount: A:0.31, C:0.52, G:0.17, T:0.00
Consensus pattern (6 bp):
GACCAC
Found at i:2620821 original size:5 final size:5
Alignment explanation
Indices: 2620813--2620839 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
2620803 CGACCCGACC
2620813 CGAGA CGAGA CGAGA CGAGA CGAGA CG
1 CGAGA CGAGA CGAGA CGAGA CGAGA CG
2620840 GCGGCGGCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.41, T:0.00
Consensus pattern (5 bp):
CGAGA
Found at i:2621731 original size:20 final size:22
Alignment explanation
Indices: 2621706--2621797 Score: 120
Period size: 22 Copynumber: 4.4 Consensus size: 22
2621696 TTTTGCCGTT
2621706 TTGCGATTCTTGG-A-ATCGCG
1 TTGCGATTCTTGGAAGATCGCG
*** *
2621726 TTGCGATT-TTCTCA-ATCGCA
1 TTGCGATTCTTGGAAGATCGCG
2621746 TTGCGATTCTTGGAAGATCGCG
1 TTGCGATTCTTGGAAGATCGCG
2621768 TTGCGATTCTTGGAAGATCGCG
1 TTGCGATTCTTGGAAGATCGCG
2621790 TTGCGATT
1 TTGCGATT
2621798 TTCTTTTGAC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.03
20 22 0.35
21 3 0.05
22 35 0.56
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (22 bp):
TTGCGATTCTTGGAAGATCGCG
Found at i:2621737 original size:22 final size:22
Alignment explanation
Indices: 2621712--2621822 Score: 87
Period size: 22 Copynumber: 5.2 Consensus size: 22
2621702 CGTTTTGCGA
2621712 TTCTTGGAATCGCGTTGCGATT
1 TTCTTGGAATCGCGTTGCGATT
* *
2621734 TTC-T-CAATCGCATTGCGA--
1 TTCTTGGAATCGCGTTGCGATT
2621752 TTCTTGGAAGATCGCGTTGCGA--
1 TTCTTGG-A-ATCGCGTTGCGATT
2621774 TTCTTGGAAGATCGCGTTGCGATT
1 TTCTTGG-A-ATCGCGTTGCGATT
*
2621798 TTCTTTTG-A-C-CGTTGCGATT
1 TTC-TTGGAATCGCGTTGCGATT
2621818 TTCTT
1 TTCTT
2621823 TTCAACATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
18 3 0.04
19 3 0.04
20 25 0.32
21 3 0.04
22 37 0.48
24 3 0.04
25 3 0.04
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (22 bp):
TTCTTGGAATCGCGTTGCGATT
Found at i:2621813 original size:20 final size:20
Alignment explanation
Indices: 2621788--2621841 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
2621778 TGGAAGATCG
* *
2621788 CGTTGCGATTTTCTTTTGAC
1 CGTTGCGATTTTCTTTTCAA
2621808 CGTTGCGATTTTCTTTTCAA
1 CGTTGCGATTTTCTTTTCAA
*
2621828 CATTGCGATTTTCT
1 CGTTGCGATTTTCT
2621842 AAATCGCGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.20, G:0.17, T:0.50
Consensus pattern (20 bp):
CGTTGCGATTTTCTTTTCAA
Found at i:2623394 original size:29 final size:29
Alignment explanation
Indices: 2623336--2623404 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
2623326 ACATATTTTT
*
2623336 TAAAAAATTAAATAATACCTCAAACTTTC
1 TAAAAAATTAAATAAGACCTCAAACTTTC
* * *
2623365 TAAAAAATTAATTAAGCCCTTAAA-TATTC
1 TAAAAAATTAAATAAGACCTCAAACT-TTC
2623394 TAAAAGAATTA
1 TAAAA-AATTA
2623405 GTCAATCCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.03
29 28 0.82
30 5 0.15
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAAAATTAAATAAGACCTCAAACTTTC
Found at i:2625319 original size:38 final size:38
Alignment explanation
Indices: 2625275--2625348 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
2625265 AAAATTATTA
*
2625275 TTTGTCTTAATTTATTAAATATATATTTTTATTTTATC
1 TTTGTCTTAACTTATTAAATATATATTTTTATTTTATC
*
2625313 TTTGTCTTAACTTATTAAATATATATTTTTGTTTTA
1 TTTGTCTTAACTTATTAAATATATATTTTTATTTTA
2625349 ATTTCTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.62
Consensus pattern (38 bp):
TTTGTCTTAACTTATTAAATATATATTTTTATTTTATC
Found at i:2630179 original size:23 final size:22
Alignment explanation
Indices: 2630153--2630218 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
2630143 ATATATATGT
*
2630153 CACTATGGTGCATTTCTACGCGG
1 CACT-TGGTGCATTTCTACGCAG
* *
2630176 CACTTCGGTGCAATTCTACGTAG
1 CACTT-GGTGCATTTCTACGCAG
*
2630199 CACTTTGGTGCATTTATACG
1 CAC-TTGGTGCATTTCTACG
2630219 AGCTATGGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 1 0.03
23 33 0.92
24 2 0.06
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (22 bp):
CACTTGGTGCATTTCTACGCAG
Found at i:2637079 original size:23 final size:23
Alignment explanation
Indices: 2637053--2637118 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
2637043 ATATATATGG
*
2637053 CACTACGGTGCATTTCTACGCGA
1 CACTTCGGTGCATTTCTACGCGA
* * *
2637076 CACTTCGGTGCAATTCTACGTGG
1 CACTTCGGTGCATTTCTACGCGA
* *
2637099 CACTTCGGCGCATTTATACG
1 CACTTCGGTGCATTTCTACG
2637119 AGCTGTGGTG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.29
Consensus pattern (23 bp):
CACTTCGGTGCATTTCTACGCGA
Found at i:2638004 original size:20 final size:20
Alignment explanation
Indices: 2637979--2638025 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
2637969 AGGGTTTCGG
*
2637979 GTTCTTTGTTTCTCGAACGA
1 GTTCTTTATTTCTCGAACGA
*
2637999 GTTCTTTATTTCTGGAACGA
1 GTTCTTTATTTCTCGAACGA
*
2638019 TTTCTTT
1 GTTCTTT
2638026 CTCAAATGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.51
Consensus pattern (20 bp):
GTTCTTTATTTCTCGAACGA
Found at i:2640915 original size:31 final size:30
Alignment explanation
Indices: 2640872--2640990 Score: 103
Period size: 31 Copynumber: 4.2 Consensus size: 30
2640862 TTAGTCAGAG
2640872 TTTT-TAAAATAATTATTAAATTTATTAAA
1 TTTTATAAAATAATTATTAAATTTATTAAA
* * *
2640901 TTGTTATAGAATAATCA-T--ATTGA-T--A
1 TT-TTATAAAATAATTATTAAATTTATTAAA
* *
2640926 --TTATAAAATAATTATTAAAATTATTATA
1 TTTTATAAAATAATTATTAAATTTATTAAA
*
2640954 TTATTATAAAATATTTATTAAATTTATTAAA
1 TT-TTATAAAATAATTATTAAATTTATTAAA
2640985 TTTTAT
1 TTTTAT
2640991 CAATAGTATA
Statistics
Matches: 69, Mismatches: 10, Indels: 21
0.69 0.10 0.21
Matches are distributed among these distances:
22 12 0.17
23 1 0.01
25 4 0.06
26 1 0.01
27 1 0.01
28 5 0.07
29 2 0.03
30 7 0.10
31 36 0.52
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (30 bp):
TTTTATAAAATAATTATTAAATTTATTAAA
Found at i:2640958 original size:17 final size:17
Alignment explanation
Indices: 2640924--2640973 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
2640914 ATCATATTGA
2640924 TATTATAAAATA---AT
1 TATTATAAAATATTTAT
*
2640938 TATTA-AAATTATTATAT
1 TATTATAAAATATT-TAT
2640955 TATTATAAAATATTTAT
1 TATTATAAAATATTTAT
2640972 TA
1 TA
2640974 AATTTATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 5 0.17
14 5 0.17
17 12 0.41
18 7 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTATAAAATATTTAT
Found at i:2642325 original size:6 final size:6
Alignment explanation
Indices: 2642316--2642452 Score: 229
Period size: 6 Copynumber: 22.8 Consensus size: 6
2642306 AACATCAATA
2642316 TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG
1 TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG
2642364 TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG
1 TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG
* * * * *
2642412 TCATTG TCATTA TCATTA TCATTA TCATTA TCATTA TCATT
1 TCATTG TCATTG TCATTG TCATTG TCATTG TCATTG TCATT
2642453 CACTATTCAA
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 130 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (6 bp):
TCATTG
Found at i:2642620 original size:23 final size:23
Alignment explanation
Indices: 2642570--2642648 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
2642560 ATAAATTGCA
* * *
2642570 CCGAAGTACCACATAGAAATGTT
1 CCGAAGGACCACATAGAATTGTC
* *
2642593 TCGAAGGACCACATAGTATTGTC
1 CCGAAGGACCACATAGAATTGTC
* * *
2642616 CCGAAGGATCACGTAGAATTATC
1 CCGAAGGACCACATAGAATTGTC
2642639 CCGAAGGACC
1 CCGAAGGACC
2642649 GCGTAGAACC
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (23 bp):
CCGAAGGACCACATAGAATTGTC
Found at i:2642653 original size:23 final size:23
Alignment explanation
Indices: 2642594--2642656 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
2642584 AGAAATGTTT
* * *
2642594 CGAAGGACCACATAGTATTGTCC
1 CGAAGGACCACGTAGAATTATCC
*
2642617 CGAAGGATCACGTAGAATTATCC
1 CGAAGGACCACGTAGAATTATCC
*
2642640 CGAAGGACCGCGTAGAA
1 CGAAGGACCACGTAGAA
2642657 CCCTCGACTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.17
Consensus pattern (23 bp):
CGAAGGACCACGTAGAATTATCC
Found at i:2642797 original size:14 final size:14
Alignment explanation
Indices: 2642733--2642797 Score: 60
Period size: 14 Copynumber: 4.4 Consensus size: 14
2642723 TTATAGTTGT
*
2642733 TCACATAACTTATA
1 TCACATAGCTTATA
2642747 TCACATAGGCATGTA-A
1 TCACATA-GC-T-TATA
* *
2642763 TCACATAGCTCATTG
1 TCACATAGCTTA-TA
2642778 TCACATAGCTTATA
1 TCACATAGCTTATA
2642792 TCACAT
1 TCACAT
2642798 TTTCATATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
13 1 0.02
14 15 0.37
15 14 0.34
16 9 0.22
17 2 0.05
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.32
Consensus pattern (14 bp):
TCACATAGCTTATA
Found at i:2642843 original size:14 final size:14
Alignment explanation
Indices: 2642824--2642869 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
2642814 AGATCAATGC
2642824 CACATAGCTTATAT
1 CACATAGCTTATAT
* *
2642838 CACATAGGTCAATAT
1 CACATAGCT-TATAT
*
2642853 CACATAACTTATAT
1 CACATAGCTTATAT
2642867 CAC
1 CAC
2642870 CTTTTCATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.39, C:0.24, G:0.07, T:0.30
Consensus pattern (14 bp):
CACATAGCTTATAT
Found at i:2646961 original size:59 final size:60
Alignment explanation
Indices: 2646881--2647006 Score: 159
Period size: 60 Copynumber: 2.1 Consensus size: 60
2646871 TTTAATCTTT
*
2646881 AAACTATGACTATCATTCTAAATTAG-CCCTTAAACTTTT-AAACATTTCAATCTCATCCC
1 AAACTATGACTATCATTCTAAATTAGTCCC-CAAACTTTTCAAACATTTCAATCTCATCCC
* ** * *
2646940 AAACTATGAACT-TCATTCTAAATTGGTCCCCATTCTTTTCTAACATTTCAATTTCATCCC
1 AAACTATG-ACTATCATTCTAAATTAGTCCCCAAACTTTTCAAACATTTCAATCTCATCCC
2647000 AAACTAT
1 AAACTAT
2647007 ACTTATATAC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
59 27 0.47
60 31 0.53
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.37
Consensus pattern (60 bp):
AAACTATGACTATCATTCTAAATTAGTCCCCAAACTTTTCAAACATTTCAATCTCATCCC
Found at i:2647276 original size:60 final size:58
Alignment explanation
Indices: 2647158--2647330 Score: 157
Period size: 60 Copynumber: 2.9 Consensus size: 58
2647148 TTAGATGAAA
* ** ** * * *
2647158 TTAGAGATGAAATTGGAATATTCAAAAGTTTGGGGACTTGTTTAGAAAGAGGGTCATAG
1 TTAGGGATGAAATT-GAATATTCAAAAGTTTAAGGACTAATTTAGAATGAGAGCCATAG
* * *
2647217 CTTAGGGATAAAATTAGAATGTTCAAAAGTTTAAGGACTAATTTAGAGTGAGAGCCATAG
1 -TTAGGGATGAAATT-GAATATTCAAAAGTTTAAGGACTAATTTAGAATGAGAGCCATAG
* * * * *
2647277 TCTGGGGATGAAATTGAAATATTCAAAAGCTTAAGAACCAATTTAAAATGAGAG
1 T-TAGGGATGAAATTG-AATATTCAAAAGTTTAAGGACTAATTTAGAATGAGAG
2647331 TTATAATTAG
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
59 2 0.02
60 89 0.98
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (58 bp):
TTAGGGATGAAATTGAATATTCAAAAGTTTAAGGACTAATTTAGAATGAGAGCCATAG
Found at i:2650827 original size:2 final size:2
Alignment explanation
Indices: 2650815--2650847 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
2650805 CCCTTATACG
*
2650815 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2650848 TTCTTTTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:2650969 original size:25 final size:25
Alignment explanation
Indices: 2650911--2650969 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
2650901 AGCATATTTA
*
2650911 TTTATGTATA-TATTTATTTATTAT
1 TTTATATATATTATTTATTTATTAT
* *
2650935 TTTTTA-ATATTATTTTATTT-TTGT
1 TTTATATATATTA-TTTATTTATTAT
2650959 TTTATATATAT
1 TTTATATATAT
2650970 ATATGTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
23 3 0.11
24 14 0.50
25 11 0.39
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (25 bp):
TTTATATATATTATTTATTTATTAT
Found at i:2655410 original size:21 final size:20
Alignment explanation
Indices: 2655324--2655481 Score: 68
Period size: 20 Copynumber: 7.8 Consensus size: 20
2655314 AAATGACCAA
**
2655324 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
2655343 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
2655363 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
2655383 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * * *
2655404 GAAAATCACGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
2655425 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
2655445 CAATAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
2655466 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
2655482 ACACATAAAT
Statistics
Matches: 100, Mismatches: 33, Indels: 11
0.69 0.23 0.08
Matches are distributed among these distances:
19 16 0.16
20 42 0.42
21 42 0.42
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:2655474 original size:20 final size:20
Alignment explanation
Indices: 2655449--2655759 Score: 79
Period size: 20 Copynumber: 15.5 Consensus size: 20
2655439 GATTTTCAAT
* *
2655449 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
2655469 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
2655489 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
2655509 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
2655529 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
2655549 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
2655569 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
2655589 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
2655610 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
2655630 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* *
2655650 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
2655670 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* *
2655690 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
2655710 AATCGCAACGATAATC-CGTA
1 AATCGCAACGCGAA-CACATA
* *
2655730 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
2655750 AATCGCAACG
1 AATCGCAACG
2655760 ATAATCCGTA
Statistics
Matches: 244, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
19 3 0.01
20 224 0.92
21 16 0.07
22 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:2655493 original size:40 final size:40
Alignment explanation
Indices: 2655449--2655838 Score: 430
Period size: 40 Copynumber: 9.7 Consensus size: 40
2655439 GATTTTCAAT
* ** * * *
2655449 AATCGCAACGCGAATATGAAAATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAAC-CGTA
* *
2655489 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
** * * *
2655529 AATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
* * *
2655569 TATCGCAACGCGTATCCGTAAATCGCAACGA-TAATACATAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGT-A
* *
2655610 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
* * *
2655650 AATCGCAACGCGTATCCGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
2655690 AATCGCAACGCGTATCCGTAAATCGCAACGA-TAATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGTA
2655730 AATCGCAACGCGTATCCGTAAATCGCAACGA-TAATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGTA
* * *
2655770 AATCGCAACGAGAATCTGTAAATCGCAACGA-TAATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGTA
* * * * *
2655810 AATTGCAACGAGAATCTGTAAATCACAAC
1 AATCGCAACGCGTATCCGTAAATCGCAAC
2655839 ACTGAAATTT
Statistics
Matches: 311, Mismatches: 34, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
39 4 0.01
40 271 0.87
41 34 0.11
42 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (40 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
Found at i:2655766 original size:20 final size:19
Alignment explanation
Indices: 2655487--2655838 Score: 389
Period size: 20 Copynumber: 17.6 Consensus size: 19
2655477 CGCGAACACA
2655487 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
2655507 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACG-GTATCCG
**
2655527 TAAATCGCAACGCGTATGGG
1 TAAATCGCAACG-GTATCCG
*
2655547 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
2655567 TATATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
* * *
2655587 TAAATCGCAACGATAATACA
1 TAAATCGCAACGGT-ATCCG
2655607 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACG-GTATCCG
2655628 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACG-GTATCCG
2655648 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
2655668 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACG-GTATCCG
2655688 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
2655708 TAAATCGCAACGATAATCCG
1 TAAATCGCAACGGT-ATCCG
2655728 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
2655748 TAAATCGCAACGATAATCCG
1 TAAATCGCAACGGT-ATCCG
* *
2655768 TAAATCGCAACGAGAATCTG
1 TAAATCGCAACG-GTATCCG
*
2655788 TAAATCGCAACGATAATCCG
1 TAAATCGCAACGGT-ATCCG
* * *
2655808 TAAATTGCAACGAGAATCTG
1 TAAATCGCAACG-GTATCCG
*
2655828 TAAATCACAAC
1 TAAATCGCAAC
2655839 ACTGAAATTT
Statistics
Matches: 288, Mismatches: 35, Indels: 18
0.84 0.10 0.05
Matches are distributed among these distances:
19 3 0.01
20 268 0.93
21 16 0.06
22 1 0.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (19 bp):
TAAATCGCAACGGTATCCG
Found at i:2656554 original size:24 final size:24
Alignment explanation
Indices: 2656515--2656561 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2656505 AAATTTGGTC
2656515 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
2656539 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
2656562 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:2656753 original size:12 final size:12
Alignment explanation
Indices: 2656736--2656760 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2656726 ATATAATCCT
2656736 GAAGAAGAAAAA
1 GAAGAAGAAAAA
2656748 GAAGAAGAAAAA
1 GAAGAAGAAAAA
2656760 G
1 G
2656761 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:2659059 original size:19 final size:19
Alignment explanation
Indices: 2659037--2659310 Score: 354
Period size: 19 Copynumber: 15.4 Consensus size: 19
2659027 CGGAAAATAC
*
2659037 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2659056 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
2659070 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
2659090 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
2659104 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2659123 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2659142 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
2659156 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2659175 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2659194 AATCGCAATGCGAAATGGA
1 AATCGCAATGCGAAATGAA
2659213 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2659232 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2659251 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
2659265 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2659284 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2659303 AATCGCAA
1 AATCGCAA
2659311 CGAGATAATC
Statistics
Matches: 226, Mismatches: 8, Indels: 42
0.82 0.03 0.15
Matches are distributed among these distances:
14 40 0.18
15 2 0.01
16 11 0.05
17 10 0.04
18 3 0.01
19 147 0.65
20 13 0.06
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:2659239 original size:109 final size:105
Alignment explanation
Indices: 2659065--2659332 Score: 459
Period size: 109 Copynumber: 2.5 Consensus size: 105
2659055 AAATCCCAAC
2659065 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGA-GAATCGCAATGCGAAATGAAAATCGC
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAATGAAAATCGC
*
2659129 AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
65 AATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
*
2659170 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGGAAATCGCAATGCGAAATGAAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGAT-G-AATCGCAATGCGAAATGAAAAT
2659235 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
62 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
2659279 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAT-AATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAAT
2659333 TATAAACGCA
Statistics
Matches: 155, Mismatches: 3, Indels: 11
0.92 0.02 0.07
Matches are distributed among these distances:
104 32 0.21
105 16 0.10
106 4 0.03
107 5 0.03
108 1 0.01
109 97 0.63
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (105 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAATGAAAATCGCA
ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
Found at i:2659348 original size:52 final size:52
Alignment explanation
Indices: 2659065--2659332 Score: 455
Period size: 52 Copynumber: 5.0 Consensus size: 52
2659055 AAATCCCAAC
2659065 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
2659118 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
2659170 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGGAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGA--G-AATCGCAATGCGAA
*
2659227 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
2659279 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
2659331 AT
1 AT
2659333 TATAAACGCA
Statistics
Matches: 207, Mismatches: 3, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
52 134 0.65
53 17 0.08
54 4 0.02
55 5 0.02
56 1 0.00
57 46 0.22
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:2659429 original size:19 final size:19
Alignment explanation
Indices: 2659339--2659421 Score: 113
Period size: 20 Copynumber: 4.6 Consensus size: 19
2659329 AAATTATAAA
2659339 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
2659358 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
2659378 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
2659394 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
2659411 CGCATTGCGAT
1 CGCATTGCGAT
2659422 AGTCATTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
14 6 0.11
16 7 0.12
17 7 0.12
19 17 0.30
20 19 0.34
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.43
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:2659547 original size:14 final size:14
Alignment explanation
Indices: 2659528--2659564 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
2659518 CATCAATTAC
2659528 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
2659542 ACAAATCATCTTTT
1 ACAAATCAACTTTT
2659556 ACAAATCAA
1 ACAAATCAA
2659565 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:2661541 original size:33 final size:33
Alignment explanation
Indices: 2661495--2661587 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
2661485 GCGAAACCAA
* *
2661495 AATCGCAACGCGAAATGAAAATCGCAACGACAT
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
2661528 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
2661561 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
2661588 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:2661552 original size:19 final size:19
Alignment explanation
Indices: 2661458--2661592 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
2661448 TAGTTTACTT
* *
2661458 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
2661478 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
2661497 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
2661516 TCGCAA--CGACAT---AA
1 TCGCAACGCGAAATGAAAA
*
2661530 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
2661549 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
2661563 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
2661582 TCGCAATGCGA
1 TCGCAACGCGA
2661593 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:2661566 original size:14 final size:14
Alignment explanation
Indices: 2661514--2661570 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
2661504 GCGAAATGAA
* *
2661514 AATCGCAACGACAT
1 AATCGCAACGAAAG
2661528 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
2661545 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
2661561 AATCGCAACG
1 AATCGCAACG
2661571 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 18 0.50
16 5 0.14
17 5 0.14
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.19, T:0.12
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:2661610 original size:19 final size:19
Alignment explanation
Indices: 2661588--2661716 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
2661578 AAAATCGCAA
2661588 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
2661607 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
2661621 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
2661640 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
2661654 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
2661673 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
2661692 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
2661712 TGCGA
1 TGCGA
2661717 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:2661630 original size:33 final size:33
Alignment explanation
Indices: 2661588--2661679 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
2661578 AAAATCGCAA
2661588 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
2661621 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
2661654 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
2661680 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:2661929 original size:92 final size:93
Alignment explanation
Indices: 2661759--2662136 Score: 726
Period size: 93 Copynumber: 4.1 Consensus size: 93
2661749 TTGAATGGAT
2661759 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
2661824 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
2661852 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
2661916 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
2661944 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TA-TTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
2662007 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
2662035 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
2662100 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
2662128 AAATTTACT
1 AAATTTACT
2662137 AAGCAATCTA
Statistics
Matches: 282, Mismatches: 1, Indels: 4
0.98 0.00 0.01
Matches are distributed among these distances:
91 89 0.32
92 96 0.34
93 97 0.34
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:2663861 original size:14 final size:14
Alignment explanation
Indices: 2663842--2663912 Score: 97
Period size: 14 Copynumber: 4.7 Consensus size: 14
2663832 TTGAAATGAA
2663842 AATCGCAACGAGAG
1 AATCGCAACGAGAG
2663856 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
2663873 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
2663889 AATCGCAACGAGAG
1 AATCGCAACGAGAG
2663903 AATCGCAACG
1 AATCGCAACG
2663913 CGAAATGAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
14 32 0.62
16 6 0.12
17 6 0.12
19 8 0.15
ACGTcount: A:0.41, C:0.24, G:0.27, T:0.08
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:2663879 original size:33 final size:33
Alignment explanation
Indices: 2663837--2663903 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
2663827 TTTGGTTGAA
*
2663837 ATGAAAATCGCAACGAGAGAATCGCAACGCGAG
1 ATGAAAATCGCAACGAGAGAATCGCAACGAGAG
*
2663870 ATGACAATCGCAACGAGAGAATCGCAACGAGAG
1 ATGAAAATCGCAACGAGAGAATCGCAACGAGAG
2663903 A
1 A
2663904 ATCGCAACGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.43, C:0.21, G:0.27, T:0.09
Consensus pattern (33 bp):
ATGAAAATCGCAACGAGAGAATCGCAACGAGAG
Found at i:2663965 original size:14 final size:14
Alignment explanation
Indices: 2663946--2664002 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
2663936 TTTGGTTTCG
2663946 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
2663960 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
2663979 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
2663993 CGTTGCGATT
1 CGTTGCGATT
2664003 GTCATCTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:2663978 original size:33 final size:33
Alignment explanation
Indices: 2663930--2664021 Score: 148
Period size: 33 Copynumber: 2.8 Consensus size: 33
2663920 AAAATCGCAA
**
2663930 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
2663963 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
* *
2663996 TGCGATTGTCATCTCGCGTTGCGATT
1 TGCGATTTTCATTTCGCGTTGCGATT
2664022 TTCATTTATC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.09, C:0.23, G:0.25, T:0.43
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:2663984 original size:19 final size:19
Alignment explanation
Indices: 2663960--2664028 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
2663950 GCGATTCTCT
2663960 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
2663979 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
* *
2663993 CGTTGCGATTGTCATCTCG
1 CGTTGCGATTTTCATTTCG
2664012 CGTTGCGATTTTCATTT
1 CGTTGCGATTTTCATTT
2664029 ATCTCGTTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 10 0.25
16 2 0.05
17 3 0.08
19 25 0.62
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:2664038 original size:21 final size:19
Alignment explanation
Indices: 2663957--2664040 Score: 61
Period size: 19 Copynumber: 4.6 Consensus size: 19
2663947 GTTGCGATTC
* *
2663957 TCTCGTTGCGATTTTCATT
1 TCTCGTTGCGATTGTCATA
*
2663976 TCGCGTTGCGA-T-TC---
1 TCTCGTTGCGATTGTCATA
*
2663990 TCTCGTTGCGATTGTCATC
1 TCTCGTTGCGATTGTCATA
* *
2664009 TCGCGTTGCGATTTTCATTTA
1 TCTCGTTGCGATTGTCA--TA
2664030 TCTCGTTGCGA
1 TCTCGTTGCGA
2664041 CTCTTCTGCA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 25 0.48
21 11 0.21
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (19 bp):
TCTCGTTGCGATTGTCATA
Found at i:2664162 original size:33 final size:33
Alignment explanation
Indices: 2664120--2664190 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
2664110 AATACTAACT
*
2664120 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
2664153 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
2664186 TGAAA
1 TGAAA
2664191 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:2664423 original size:22 final size:22
Alignment explanation
Indices: 2664371--2664425 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
2664361 TGGTTGTGAG
**
2664371 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
2664393 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
2664415 GGATTTCTTCG
1 GGATTTCTTCG
2664426 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:2664596 original size:20 final size:20
Alignment explanation
Indices: 2664571--2664763 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
2664561 CTTTAAATAT
2664571 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
2664591 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
2664613 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
2664632 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
2664652 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
2664672 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
2664692 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
2664712 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
2664732 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
2664752 CGCGTTGCGATT
1 CGCGTTGCGATT
2664764 ATTGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:2664758 original size:60 final size:60
Alignment explanation
Indices: 2664571--2664763 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
2664561 CTTTAAATAT
**
2664571 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
2664632 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
2664692 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
2664752 CGCGTTGCGATT
1 CGCGTTGCGATT
2664764 ATTGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:2666491 original size:36 final size:36
Alignment explanation
Indices: 2666451--2666907 Score: 367
Period size: 36 Copynumber: 13.0 Consensus size: 36
2666441 GATTTATCTC
*
2666451 AAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
*
2666487 AAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
*
2666523 AAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
* * *
2666559 AAAACAAATTTTGTCTCTCGTGAGACAATTTCCCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
* * *
2666595 GAAACAAA------ATCT-TTGA-ATCTGTTT-TCCTT
1 AAAACAAATTTTGTCTCTCTTGAGA-CAGTTTCT-CTT
* ** * * *
2666624 TAAACAAATTGCGTTTCTCTCGAGACAGTTTCTTTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
** * *
2666660 AGAATTAAATTTTGTCTCTTTTGAGACAGTTTTTCTT
1 A-AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
* * * *
2666697 GAAACAAATTTTGTCTCTCTTGGGACTGTTTCCCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
* * * *
2666733 GAAATAAA------ATCT-TTGA-ATATGTTT-TCCTT
1 AAAACAAATTTTGTCTCTCTTGAGACA-GTTTCT-CTT
* * * *
2666762 TAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
** *
2666798 AAAATTGAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
1 AAAA-CAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
* *
2666835 GAAACAAATTTTGTCTCTCTTGAAACAGTTT-TCCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCT-CTT
* *
2666871 GAAACAAAGTTTTGTCTCTCTTGAGACAGTTCCTCTT
1 AAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTT
2666908 GAAGCACCAA
Statistics
Matches: 334, Mismatches: 60, Indels: 53
0.75 0.13 0.12
Matches are distributed among these distances:
28 2 0.01
29 33 0.10
30 6 0.02
35 7 0.02
36 201 0.60
37 84 0.25
38 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.43
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
Found at i:2666516 original size:19 final size:19
Alignment explanation
Indices: 2666494--2666553 Score: 56
Period size: 15 Copynumber: 3.3 Consensus size: 19
2666484 CTTAAAACAA
2666494 ATTTTGTCTCTCTTGAGAC
1 ATTTTGTCTCTCTTGAGAC
* *
2666513 A--TT-T-TCTCTTAAAAC
1 ATTTTGTCTCTCTTGAGAC
2666528 AAATTTTGTCTCTCTTGAGAC
1 --ATTTTGTCTCTCTTGAGAC
2666549 ATTTT
1 ATTTT
2666554 CTCTTAAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
15 9 0.29
16 1 0.03
17 3 0.10
19 8 0.26
20 1 0.03
21 9 0.29
ACGTcount: A:0.23, C:0.18, G:0.10, T:0.48
Consensus pattern (19 bp):
ATTTTGTCTCTCTTGAGAC
Found at i:2666685 original size:102 final size:102
Alignment explanation
Indices: 2666514--2666704 Score: 240
Period size: 102 Copynumber: 1.9 Consensus size: 102
2666504 TCTTGAGACA
** * *
2666514 TTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTTAAAACAAATTTTGTCTCTCG
1 TTTTCTCTTAAAACAAATTGCGTCTCTCTCGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCG
2666579 TGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTG
66 TGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTG
* * * ** *
2666616 TTTTC-CTTTAAACAAATTGCGTTTCTCTCGAGACAGTTTCTTTTAGAATTAAATTTTGTCTCTT
1 TTTTCTCTTAAAACAAATTGCGTCTCTCTCGAGACAGTTTCTCTTA-AAACAAATTTTGTCTCTC
* * **
2666680 TTGAGACAGTTTTTCTTGAAACAAA
65 GTGAGACAATTTCCCTTGAAACAAA
2666705 TTTTGTCTCT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
101 33 0.45
102 41 0.55
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.43
Consensus pattern (102 bp):
TTTTCTCTTAAAACAAATTGCGTCTCTCTCGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCG
TGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTG
Found at i:2666686 original size:37 final size:36
Alignment explanation
Indices: 2666617--2666910 Score: 198
Period size: 37 Copynumber: 8.3 Consensus size: 36
2666607 TTGAATCTGT
* ** * *
2666617 TTTCCTTT-AAACAAATTGCGTTTCTCTCGAGACAG
1 TTTCTTTTGAAACAAATTTTGTCTCTCTTGAGACAG
** *
2666652 TTTCTTTTAGAATTAAATTTTGTCTCTTTTGAGACAG
1 TTTCTTTT-GAAACAAATTTTGTCTCTCTTGAGACAG
* *
2666689 TTT-TTCTTGAAACAAATTTTGTCTCTCTTGGGACTG
1 TTTCTT-TTGAAACAAATTTTGTCTCTCTTGAGACAG
** * * *
2666725 TTTCCCTTGAAATAAA------ATCT-TTGA-ATATG
1 TTTCTTTTGAAACAAATTTTGTCTCTCTTGAGACA-G
* * *
2666754 TTTTCCTTT-AAACAAATTTCGTCTCTCTCGAGACAG
1 -TTTCTTTTGAAACAAATTTTGTCTCTCTTGAGACAG
* ** *
2666790 TTTCTTTTAAAATTGAGTTTTGTCTCTCTTGAGACAG
1 TTTCTTTTGAAA-CAAATTTTGTCTCTCTTGAGACAG
* *
2666827 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAAACAG
1 TTTCTTTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
2666863 TTT-TCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TTTCT-TTTGAAACAAA-TTTTGTCTCTCTTGAGACAG
* *
2666900 TTCCTCTTGAA
1 TTTCTTTTGAA
2666911 GCACCAATCT
Statistics
Matches: 201, Mismatches: 39, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
28 1 0.00
29 10 0.05
30 10 0.05
35 18 0.09
36 78 0.39
37 83 0.41
38 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (36 bp):
TTTCTTTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:2666702 original size:73 final size:72
Alignment explanation
Indices: 2666615--2666910 Score: 241
Period size: 73 Copynumber: 4.2 Consensus size: 72
2666605 CTTTGAATCT
* * * * * * *
2666615 GTTTTCCTTTAAACAAATTGCGTTTCTCTCGAGACAGTTTCTTTTAGAATTAAATTTTGTCTCTT
1 GTTTTTCTTGAAACAAATTTCGTCTCTCTCGAGACAGTTTCTCTT-GAAATAAATTTTGTCTCTC
2666680 TTGAGACA
65 TTGAGACA
* * * * * *
2666688 GTTTTTCTTGAAACAAATTTTGTCTCTCTTGGGACTGTTTCCCTTGAAATAAA------ATCT-T
1 GTTTTTCTTGAAACAAATTTCGTCTCTCTCGAGACAGTTTCTCTTGAAATAAATTTTGTCTCTCT
*
2666746 TGA-ATA
66 TGAGACA
* * * * * *
2666752 TGTTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTTAAAATTGAGTTTTGTCTCT
1 -GTTTTTCTTGAAACAAATTTCGTCTCTCTCGAGACAGTTTCTCTTGAAA-TAAATTTTGTCTCT
2666817 CTTGAGACA
64 CTTGAGACA
* * * * *
2666826 GTTTCTCTTGAAACAAATTTTGTCTCTCTTGAAACAGTTT-TCCTTGAAACAAAGTTTTGTCTCT
1 GTTTTTCTTGAAACAAATTTCGTCTCTCTCGAGACAGTTTCT-CTTGAAATAAA-TTTTGTCTCT
2666890 CTTGAGACA
64 CTTGAGACA
**
2666899 GTTCCTCTTGAA
1 GTTTTTCTTGAA
2666911 GCACCAATCT
Statistics
Matches: 173, Mismatches: 38, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
64 2 0.01
65 44 0.25
66 5 0.03
72 12 0.07
73 108 0.62
74 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (72 bp):
GTTTTTCTTGAAACAAATTTCGTCTCTCTCGAGACAGTTTCTCTTGAAATAAATTTTGTCTCTCT
TGAGACA
Found at i:2666702 original size:138 final size:137
Alignment explanation
Indices: 2666479--2666878 Score: 559
Period size: 138 Copynumber: 2.9 Consensus size: 137
2666469 CTTGAGACAG
* * * * * **
2666479 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTTAAAACAAATTTTGTCTCTCTT
1 TTTC-CTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTTAAATTAAATTTTGTCTCTCTT
* * *
2666544 GAGACA-TTTTCTCTTAAAACAAATTTTGTCTCTCGTGAGACAATTTCCCTTGAAACAAAATCTT
65 GAGACAGTTTT-TCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTT
*
2666608 TGAATCTGT
129 TGAATATGT
* * *
2666617 TTTCCTTTAAACAAATTGCGTTTCTCTCGAGACAGTTTCTTTTAGAATTAAATTTTGTCTCTTTT
1 TTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTTA-AATTAAATTTTGTCTCTCTT
* * *
2666682 GAGACAGTTTTTCTTGAAACAAATTTTGTCTCTCTTGGGACTGTTTCCCTTGAAATAAAATCTTT
65 GAGACAGTTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTT
2666747 GAATATGT
130 GAATATGT
* *
2666755 TTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTTAAAATTGAGTTTTGTCTCTCTT
1 TTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTT-AAATTAAATTTTGTCTCTCTT
* * *
2666820 GAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAAACAGTTTTCCTTGAAACAAA
65 GAGACAGTTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
2666879 GTTTTGTCTC
Statistics
Matches: 231, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
137 33 0.14
138 193 0.84
139 5 0.02
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (137 bp):
TTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCTTTTAAATTAAATTTTGTCTCTCTTG
AGACAGTTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTG
AATATGT
Found at i:2666793 original size:65 final size:65
Alignment explanation
Indices: 2666550--2666793 Score: 213
Period size: 65 Copynumber: 3.6 Consensus size: 65
2666540 TCTTGAGACA
* * * * *
2666550 TTTTCTCTTAAAACAAATTTTGTCTCTCGT-GAGACAATTTCCCTTGAAACAAAATCTTTGAATC
1 TTTTC-CTTTAAACAAATTTCGTCTCTC-TCGAGACAGTTTCCCTTGAAATAAAATCTTTGAATA
2666614 TG
64 TG
* * ** * *
2666616 TTTTCCTTTAAACAAATTGCGTTTCTCTCGAGACAGTTTCTTTTAGAATTAAATTTTGTCTCTTT
1 TTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCCCTT-GAAATAAA------ATC-TT
*
2666681 TGAGACA-G
58 TGA-ATATG
* * * * * *
2666689 TTTTTCTTGAAACAAATTTTGTCTCTCTTGGGACTGTTTCCCTTGAAATAAAATCTTTGAATATG
1 TTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCCCTTGAAATAAAATCTTTGAATATG
2666754 TTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTC
1 TTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTC
2666794 TTTTAAAATT
Statistics
Matches: 136, Mismatches: 31, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
64 3 0.02
65 70 0.51
66 13 0.10
72 9 0.07
73 40 0.29
74 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.43
Consensus pattern (65 bp):
TTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAGTTTCCCTTGAAATAAAATCTTTGAATATG
Found at i:2666854 original size:21 final size:21
Alignment explanation
Indices: 2666829--2666894 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
2666819 TGAGACAGTT
2666829 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
*
2666850 TCTCTTGAAAC--A-GTT-T-
1 TCTCTTGAAACAAATTTTGTC
2666866 TC-CTTGAAACAAAGTTTTGTC
1 TCTCTTGAAACAAA-TTTTGTC
2666887 TCTCTTGA
1 TCTCTTGA
2666895 GACAGTTCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
15 8 0.22
16 2 0.06
17 2 0.06
18 2 0.06
19 3 0.08
20 1 0.03
21 13 0.36
22 5 0.14
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (21 bp):
TCTCTTGAAACAAATTTTGTC
Found at i:2667038 original size:31 final size:32
Alignment explanation
Indices: 2666981--2667057 Score: 120
Period size: 31 Copynumber: 2.4 Consensus size: 32
2666971 TCTTGAGACA
*
2666981 GTTTCTCTTGAAGAACAAAAAACCTTTGAAATT
1 GTTTCTCTTGAA-AACAAAAAACCTTTGAAAAT
*
2667014 GTTTCTCTTGAAAA-AAGAAACCTTTGAAAAT
1 GTTTCTCTTGAAAACAAAAAACCTTTGAAAAT
2667045 GTTTCTCTTGAAA
1 GTTTCTCTTGAAA
2667058 CACCAAACCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 28 0.67
32 2 0.05
33 12 0.29
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (32 bp):
GTTTCTCTTGAAAACAAAAAACCTTTGAAAAT
Found at i:2667066 original size:31 final size:31
Alignment explanation
Indices: 2666981--2667068 Score: 115
Period size: 31 Copynumber: 2.8 Consensus size: 31
2666971 TCTTGAGACA
*
2666981 GTTTCTCTTGAAGAACAAAAAACCTTTGAAATT
1 GTTTCTCTTG-A-AACAAAAAACCTTTGAAAAT
2667014 GTTTCTCTTGAAA-AAAGAAACCTTTGAAAAT
1 GTTTCTCTTGAAACAAA-AAACCTTTGAAAAT
**
2667045 GTTTCTCTTGAAACACCAAACCTT
1 GTTTCTCTTGAAACAAAAAACCTT
2667069 CGAGTTCAGT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
30 3 0.06
31 35 0.70
32 2 0.04
33 10 0.20
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (31 bp):
GTTTCTCTTGAAACAAAAAACCTTTGAAAAT
Found at i:2668854 original size:22 final size:22
Alignment explanation
Indices: 2668829--2668874 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
2668819 CAAAGCTTAT
2668829 TTATTTATGTATATATT-TTTTA
1 TTATTTATGTA-ATATTATTTTA
* *
2668851 TTATTTTTTTAATATTATTTTA
1 TTATTTATGTAATATTATTTTA
2668873 TT
1 TT
2668875 TTTGTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (22 bp):
TTATTTATGTAATATTATTTTA
Found at i:2668860 original size:11 final size:11
Alignment explanation
Indices: 2668844--2668885 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
2668834 TATGTATATA
2668844 TTTTTTATTAT
1 TTTTTTATTAT
*
2668855 TTTTTTAATAT
1 TTTTTTATTAT
*
2668866 TATTTTATT-T
1 TTTTTTATTAT
2668876 TTGTTTTATT
1 TT-TTTTATT
2668886 TTTATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 2 0.08
11 24 0.92
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTTTATTAT
Found at i:2668887 original size:30 final size:33
Alignment explanation
Indices: 2668825--2668907 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 33
2668815 TTAACAAAGC
* * *
2668825 TTATTTATTTATGTA-TATATTTTTTATTATTT
1 TTATATATATATGTATTTTATTTTTTATTATTT
*
2668857 TT-T-TA-ATAT-TATTTTATTTTTGTTTTATTT
1 TTATATATATATGTATTTTATTTTT-TATTATTT
2668887 TTATATATATATGTATTTTAT
1 TTATATATATATGTATTTTAT
2668908 ATTTCTTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
28 2 0.05
29 11 0.26
30 11 0.26
31 2 0.05
32 4 0.10
33 4 0.10
34 8 0.19
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (33 bp):
TTATATATATATGTATTTTATTTTTTATTATTT
Found at i:2668890 original size:22 final size:22
Alignment explanation
Indices: 2668841--2668883 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
2668831 ATTTATGTAT
2668841 ATATT-TTTTATTATTTTTTTA
1 ATATTATTTTATTATTTTTTTA
2668862 ATATTATTTTATT-TTTGTTTTA
1 ATATTATTTTATTATTT-TTTTA
2668884 TTTTTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (22 bp):
ATATTATTTTATTATTTTTTTA
Found at i:2668934 original size:2 final size:2
Alignment explanation
Indices: 2668927--2668965 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
2668917 CACGTTCTTT
2668927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2668966 TTACTTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2669117 original size:13 final size:13
Alignment explanation
Indices: 2669099--2669125 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2669089 TTTCATTTTG
2669099 TTTTATCTTTTAT
1 TTTTATCTTTTAT
2669112 TTTTATCTTTTAT
1 TTTTATCTTTTAT
2669125 T
1 T
2669126 ATTTTTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTATCTTTTAT
Found at i:2684860 original size:3 final size:3
Alignment explanation
Indices: 2684854--2684932 Score: 104
Period size: 3 Copynumber: 25.7 Consensus size: 3
2684844 TCATTTAAAT
* *
2684854 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TCA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* *
2684900 TTA TTA TTA TCA ATA TTA TATA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT
2684933 TAATAAATAA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
3 60 0.91
4 6 0.09
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:2685088 original size:27 final size:27
Alignment explanation
Indices: 2685050--2685140 Score: 173
Period size: 27 Copynumber: 3.4 Consensus size: 27
2685040 CCTAGCCACC
2685050 CCCAGCCGCCTCTGATGCTTCCAGAAT
1 CCCAGCCGCCTCTGATGCTTCCAGAAT
2685077 CCCAGCCGCCTCTGATGCTTCCAGAAT
1 CCCAGCCGCCTCTGATGCTTCCAGAAT
*
2685104 CCCAGCCGCCTCTGATGCTTCAAGAAT
1 CCCAGCCGCCTCTGATGCTTCCAGAAT
2685131 CCCAGCCGCC
1 CCCAGCCGCC
2685141 GCCTCACTGC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.19, C:0.43, G:0.19, T:0.20
Consensus pattern (27 bp):
CCCAGCCGCCTCTGATGCTTCCAGAAT
Found at i:2685406 original size:13 final size:14
Alignment explanation
Indices: 2685388--2685417 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
2685378 GACAACAAAC
2685388 AAAACAGAAAAA-A
1 AAAACAGAAAAAGA
2685401 AAAACAGAAAAAGA
1 AAAACAGAAAAAGA
2685415 AAA
1 AAA
2685418 GAGGACAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAACAGAAAAAGA
Found at i:2686368 original size:20 final size:18
Alignment explanation
Indices: 2686331--2686371 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
2686321 GTAGTATTTG
*
2686331 TATTTTTATATTTTTAAA
1 TATTTTTATATTTATAAA
2686349 TATTTTTATATATTCATAAA
1 TATTTTTATAT-TT-ATAAA
2686369 TAT
1 TAT
2686372 ATATATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 2 0.10
20 7 0.35
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTTTTATATTTATAAA
Found at i:2686414 original size:13 final size:13
Alignment explanation
Indices: 2686396--2686434 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
2686386 GTAATTAAAT
2686396 TTTTAAATATTTA
1 TTTTAAATATTTA
*
2686409 TTTTAAATGAATTA
1 TTTTAAAT-ATTTA
2686423 TTTT-AATATTTA
1 TTTTAAATATTTA
2686435 GCTTTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 4 0.17
13 11 0.48
14 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
TTTTAAATATTTA
Found at i:2687148 original size:18 final size:18
Alignment explanation
Indices: 2687101--2687149 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
2687091 CTTTTCAAAC
2687101 TTTTTA-TTTATTTATTA
1 TTTTTATTTTATTTATTA
**
2687118 TTTTTATAATATTTA-TA
1 TTTTTATTTTATTTATTA
2687135 TGTTTTATTTTATTT
1 T-TTTTATTTTATTT
2687150 GCAAGTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTTATTTTATTTATTA
Found at i:2687171 original size:13 final size:15
Alignment explanation
Indices: 2687140--2687176 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
2687130 TTATATGTTT
2687140 TATTTTATTTGCAAG
1 TATTTTATTTGCAAG
2687155 TATTTTATTT-C-AG
1 TATTTTATTTGCAAG
2687168 TA-TTTATTT
1 TATTTTATTT
2687177 TTATGTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.32
13 4 0.18
14 1 0.05
15 10 0.45
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.62
Consensus pattern (15 bp):
TATTTTATTTGCAAG
Found at i:2688634 original size:14 final size:14
Alignment explanation
Indices: 2688595--2688634 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
2688585 TTTACGTTTG
*
2688595 TATTTACATTTACA
1 TATTTACATTTGCA
*
2688609 TTTTTACATTTGCA
1 TATTTACATTTGCA
2688623 TATTTACATTTG
1 TATTTACATTTG
2688635 GCATCTTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.55
Consensus pattern (14 bp):
TATTTACATTTGCA
Found at i:2693388 original size:85 final size:85
Alignment explanation
Indices: 2693245--2693983 Score: 1358
Period size: 85 Copynumber: 8.7 Consensus size: 85
2693235 GACCTTTTAT
2693245 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
2693310 TCATTGAAGTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
*
2693330 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
*
2693395 TCATTGAATTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
* *
2693415 ATGTGCCCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTAGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
2693480 TCATTGAAGTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
2693500 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
2693565 TCATTGAAGTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
*
2693585 ATGTGCTCAATAGCATCTTCTAGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
2693650 TCATTGAAGTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
2693670 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTC-TTGAGTTATCTGATCTAGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
2693734 TCATTGAAGTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
2693754 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
*
2693819 TCATTGAATTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
* *
2693839 ATGTGCCCAATAGCATCTTCTGGAAGTG-TTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAA
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
*
2693903 TCATTGAATTTAGAAGATGA
66 TCATTGAAGTTAGAAGATGA
* *
2693923 ATGTGCCCAATAGCATCTTCTGGAAGTG-TTCTTTGAGTTATCTGATCTGGTTTGGCAGAAC
1 ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAAC
2693984 TTACAGAACC
Statistics
Matches: 640, Mismatches: 13, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
84 200 0.31
85 440 0.69
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (85 bp):
ATGTGCTCAATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTAGTTTGGCAGAACCAA
TCATTGAAGTTAGAAGATGA
Found at i:2696170 original size:50 final size:51
Alignment explanation
Indices: 2695990--2696190 Score: 212
Period size: 54 Copynumber: 3.8 Consensus size: 51
2695980 AGAAATTTTG
* * *
2695990 GCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAACGCTTTATGAACGTCT-GA
1 GCAGAAACCACAGAAAAGGATGAATGTGTTGTCAAATG-TTT-T--ACATCTCGA
* * *
2696044 GCAAAAACCCCA-AGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACATCTGA
1 GCAGAAACCACAGA-AAAGGATGAATGTGTTGTCAAATGTTTTAC-ATC-TC-GA
* *
2696098 GCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATCTCGA
1 GCAGAAACCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACATCTCGA
*
2696149 -CAGAAACCACAGGAAAA-GATGAATGTATTGTCAAATGTTTTA
1 GCAGAAACCACA-GAAAAGGATGAATGTGTTGTCAAATGTTTTA
2696191 TGAACCAGTG
Statistics
Matches: 126, Mismatches: 14, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
50 35 0.28
51 8 0.06
52 4 0.03
53 6 0.05
54 72 0.57
55 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.24
Consensus pattern (51 bp):
GCAGAAACCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACATCTCGA
Found at i:2696591 original size:22 final size:22
Alignment explanation
Indices: 2696562--2696616 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
2696552 ATCTACACTC
*
2696562 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
*
2696584 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
2696606 TTCAAAGATGA
1 TTCAAAGATGA
2696617 AAACTTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCTCTT
Found at i:2697235 original size:113 final size:112
Alignment explanation
Indices: 2697037--2698094 Score: 1249
Period size: 113 Copynumber: 9.2 Consensus size: 112
2697027 ATATGATGGA
* *
2697037 TCAA-CTTTTCGCTTGAATTCATCA-TTCGAT-GATTCAGTATTTCCAGTTCGAGTTCATAATGA
1 TCAACCTTTT-GCTTGAATTCATCACTT-GATGGATTCA-TTTTTCCAG-TAGAGTTCATAATGA
*
2697099 GAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
62 GAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* *
2697150 TCAA-CTTTTCGCTTGAATTCATCA-TTCGAT-GATTCAGTATTTCCAGTTCGAGTTCATAATGA
1 TCAACCTTTT-GCTTGAATTCATCACTT-GATGGATTCA-TTTTTCCAG-TAGAGTTCATAATGA
*
2697212 GAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
62 GAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * * *
2697263 TCAA-CTTTTCGCTCAAATCCATTACTTGAT-GAATCAATTTTTCCAG-AGGAGTTCATAATGAG
1 TCAACCTTTT-GCTTGAATTCATCACTTGATGGATTC-ATTTTTCCAGTA-GAGTTCATAATGAG
2697325 AAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
63 AAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
*
2697378 TCAACCTTTT-TTCTGAATTCATCACTTGATGGATT-ATTTTTGCCAGAGGTAGAGTTCATAATG
1 TCAACCTTTTGCT-TGAATTCATCACTTGATGGATTCATTTTT-CC--A-GTAGAGTTCATAATG
2697441 AGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
61 AGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* *
2697496 TCAACCTTTTTGTTTGAATTCATCACTTGATGGATT-ATTGTTGCCAGAGGTAGAGTTCATAATG
1 TCAACC-TTTTGCTTGAATTCATCACTTGATGGATTCATT-TTTCC--A-GTAGAGTTCATAATG
*
2697560 AGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
61 AGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * * *
2697615 TCAACCTTTTGCTCAAATCCATCACTTGAT-GAATCAACTTTTCCAG-AGAAGTTCATAATGAGA
1 TCAACCTTTTGCTTGAATTCATCACTTGATGGATTC-ATTTTTCCAGTAG-AGTTCATAATGAGA
2697678 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
64 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
*
2697727 TCAACCTTTT-TTCTGAATTCATCACTTGATGGATT-ATTTTTGCCAGAGGTAGAGTTCATAATG
1 TCAACCTTTTGCT-TGAATTCATCACTTGATGGATTCATTTTT-CC--A-GTAGAGTTCATAATG
2697790 AGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
61 AGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* * * *
2697845 TCAATCTTTTG-TCTGAATTCATCACTTGATGGATT-ATTTTTGCCAGAAAAGGTTCATAATAAG
1 TCAACCTTTTGCT-TGAATTCATCACTTGATGGATTCATTTTT-CCAGTAGA-GTTCATAATGAG
*
2697908 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
63 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * * *
2697958 TCAACCTTTTGCTCAAATCCATCACTTGATGGA-GCAGCTTTTCCAG-AGAAGTTCATAATGAGA
1 TCAACCTTTTGCTTGAATTCATCACTTGATGGATTCA-TTTTTCCAGTAG-AGTTCATAATGAGA
*
2698021 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
64 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* *
2698070 TCAACTTTTTGCAT-AATTCTATCAC
1 TCAACCTTTTGCTTGAATTC-ATCAC
2698095 AGAAGGAGAT
Statistics
Matches: 861, Mismatches: 47, Indels: 75
0.88 0.05 0.08
Matches are distributed among these distances:
111 10 0.01
112 166 0.19
113 228 0.26
114 20 0.02
115 103 0.12
116 28 0.03
117 5 0.01
118 184 0.21
119 113 0.13
120 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (112 bp):
TCAACCTTTTGCTTGAATTCATCACTTGATGGATTCATTTTTCCAGTAGAGTTCATAATGAGAAG
AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
Found at i:2697464 original size:118 final size:113
Alignment explanation
Indices: 2697086--2698094 Score: 1305
Period size: 118 Copynumber: 8.8 Consensus size: 113
2697076 TTTCCAGTTC
*
2697086 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* * * *
2697151 CAA-CTTTTCGCTTGAATTCATCA-TTCGAT-GATTCAGTATTTCCAG-TTC
66 CAACCTTTTTGC-TGAATTCATCACTT-GATGGATT-A-TTTTTCCAGAGTA
*
2697199 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* * * * * *
2697264 CAA-CTTTTCGCTCAAATCCATTACTTGATGAATCAATTTTTCCAGAG--
66 CAACCTTTTTGCT-GAATTCATCACTTGATGGAT-TATTTTTCCAGAGTA
2697311 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
1 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
*
2697376 GTTCAACCTTTTTTCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGGTA
63 GTTCAACCTTTTTGCTGAATTCATCACTTGATGGATTATTTTT-CCAGA-GTA
2697429 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
1 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
* *
2697494 GTTCAACCTTTTTGTTTGAATTCATCACTTGATGGATTATTGTTGCCAGAGGTA
63 GTTCAACCTTTTTG-CTGAATTCATCACTTGATGGATTATT-TTTCCAGA-GTA
*
2697548 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
1 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
* * * * *
2697613 GTTCAACC-TTTTGCTCAAATCCATCACTTGATGAATCAACTTTTCCAGAG-A
63 GTTCAACCTTTTTGCT-GAATTCATCACTTGATGGAT-TATTTTTCCAGAGTA
2697664 -AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
*
2697728 CAACCTTTTTTCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGGTA
66 CAACCTTTTTGCTGAATTCATCACTTGATGGATTATTTTT-CCAGA-GTA
2697778 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
1 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
* **
2697843 GTTCAATC-TTTTGTCTGAATTCATCACTTGATGGATTATTTTTGCCAGAAAA
63 GTTCAACCTTTTTG-CTGAATTCATCACTTGATGGATTATTTTT-CCAGAGTA
* *
2697895 G-GTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* * ** *
2697959 CAACC-TTTTGCTCAAATCCATCACTTGATGGAGCAGCTTTTCCAGAG-A
66 CAACCTTTTTGCT-GAATTCATCACTTGATGGATTA-TTTTTCCAGAGTA
*
2698007 -AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
2698071 CAA-CTTTTTGCAT-AATTCTATCAC
66 CAACCTTTTTGC-TGAATTC-ATCAC
2698095 AGAAGGAGAT
Statistics
Matches: 816, Mismatches: 48, Indels: 65
0.88 0.05 0.07
Matches are distributed among these distances:
111 10 0.01
112 170 0.21
113 179 0.22
114 18 0.02
115 104 0.13
116 25 0.03
117 9 0.01
118 191 0.23
119 108 0.13
120 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (113 bp):
GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
CAACCTTTTTGCTGAATTCATCACTTGATGGATTATTTTTCCAGAGTA
Found at i:2697759 original size:349 final size:345
Alignment explanation
Indices: 2697086--2698079 Score: 1607
Period size: 349 Copynumber: 2.9 Consensus size: 345
2697076 TTTCCAGTTC
*
2697086 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
1 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
* * * * * *
2697148 GTTCAACTTTTCGCTTGAATTCATCA-TTCGAT-GATTCAGTATTTCC--AGTTCGAGTTCATAA
66 GTTCAACTTTTTGTTTGAATTCATCACTT-GATGGATT-ATTATTGCCAGAGATAGAGTTCATAA
2697209 TGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTC
129 TGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-
* * *
2697273 GCTCAAATCCATTACTTGATGAATCAATTTTTCCAGAGGAGTTCATAATGAGAAGAACTCGTCAT
193 GCTCAAATCCATCACTTGATGAATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAA--C-TCAT
2697338 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCAC
255 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCAC
2697403 TTGATGGATTATTTTTGCCAGAGGTA
320 TTGATGGATTATTTTTGCCAGAGGTA
2697429 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
1 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
* *
2697494 GTTCAACCTTTTTGTTTGAATTCATCACTTGATGGATTATTGTTGCCAGAGGTAGAGTTCATAAT
66 GTTCAA-CTTTTTGTTTGAATTCATCACTTGATGGATTATTATTGCCAGAGATAGAGTTCATAAT
2697559 GAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
130 GAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
2697624 TGCTCAAATCCATCACTTGATGAATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCT
192 TGCTCAAATCCATCACTTGATGAATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCT
2697689 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCACTT
257 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCACTT
2697754 GATGGATTATTTTTGCCAGAGGTA
322 GATGGATTATTTTTGCCAGAGGTA
2697778 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
1 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
* * *
2697843 GTTCAA-TCTTTTGTCTGAATTCATCACTTGATGGATTATTTTTGCCAGA-AAAG-GTTCATAAT
66 GTTCAACT-TTTTGTTTGAATTCATCACTTGATGGATTATTATTGCCAGAGATAGAGTTCATAAT
* * *
2697905 AAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGC
130 GAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * *
2697970 TCAAATCCATCACTTGATGGAGCAGCTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAA
195 TCAAATCCATCACTTGATGAATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAA
*
2698035 GAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAA-CTTTTT
260 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTT
2698080 GCATAATTCT
Statistics
Matches: 616, Mismatches: 22, Indels: 27
0.93 0.03 0.04
Matches are distributed among these distances:
342 6 0.01
343 173 0.28
344 1 0.00
345 1 0.00
346 63 0.10
347 30 0.05
348 45 0.07
349 188 0.31
350 1 0.00
351 1 0.00
352 102 0.17
353 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (345 bp):
GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
GTTCAACTTTTTGTTTGAATTCATCACTTGATGGATTATTATTGCCAGAGATAGAGTTCATAATG
AGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
CAAATCCATCACTTGATGAATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCACTTGATG
GATTATTTTTGCCAGAGGTA
Found at i:2698612 original size:76 final size:76
Alignment explanation
Indices: 2698486--2698823 Score: 572
Period size: 76 Copynumber: 4.5 Consensus size: 76
2698476 CTATTTCCCA
* * **
2698486 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTACGGGAGCTTTTTGATGTTTTCAA
1 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATGTTTTCAA
2698551 AGCCTTCGGGT
66 AGCCTTCGGGT
2698562 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATGTTTTCAA
1 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATGTTTTCAA
2698627 AGCCTTCGGGT
66 AGCCTTCGGGT
2698638 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATG-TTTCAA
1 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATGTTTTCAA
2698702 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
2698713 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTC-AGGAGCTTTTTAATGTTTTCA
1 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGA-AAGCTTTTTGATGTTTTCA
*
2698777 AAACCTTCGGGT
65 AAGCCTTCGGGT
* *
2698789 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAA
1 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAA
2698824 CATTTCTATC
Statistics
Matches: 251, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
74 1 0.00
75 71 0.28
76 179 0.71
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (76 bp):
CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATGTTTTCAA
AGCCTTCGGGT
Found at i:2698763 original size:151 final size:152
Alignment explanation
Indices: 2698486--2698823 Score: 581
Period size: 151 Copynumber: 2.2 Consensus size: 152
2698476 CTATTTCCCA
**
2698486 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTACGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTACGAAAGCTTTTTGATGTTTTCAA
2698551 AGCCTTCGGGTCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTT
66 AGCCTTCGGGTCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTT
* *
2698616 GATGTTTTCAAAGCCTTCGGGT
131 AATGTTTTCAAAACCTTCGGGT
* *
2698638 CATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATG-TTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTACGAAAGCTTTTTGATGTTTTCAA
*
2698702 AGCCTTCGGGTCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTC-AGGAGCTTTT
66 AGCCTTCGGGTCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGA-AAGCTTTT
2698766 TAATGTTTTCAAAACCTTCGGGT
130 TAATGTTTTCAAAACCTTCGGGT
*
2698789 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAA
2698824 CATTTCTATC
Statistics
Matches: 176, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
150 1 0.01
151 121 0.69
152 54 0.31
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (152 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTACGAAAGCTTTTTGATGTTTTCAA
AGCCTTCGGGTCATCTATAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTT
AATGTTTTCAAAACCTTCGGGT
Found at i:2698957 original size:3 final size:3
Alignment explanation
Indices: 2698949--2699027 Score: 95
Period size: 3 Copynumber: 25.7 Consensus size: 3
2698939 TCATTTAAAT
* * *
2698949 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TCA TTA TTTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* *
2698995 TTA TTA TTA TCA ATA TTA TATA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT
2699028 TAATAAATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
3 58 0.91
4 6 0.09
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:2699183 original size:27 final size:27
Alignment explanation
Indices: 2699145--2699235 Score: 164
Period size: 27 Copynumber: 3.4 Consensus size: 27
2699135 CCTAGCCACC
*
2699145 CCCAACCGCCTCTGATGCTTCCAGAAT
1 CCCAGCCGCCTCTGATGCTTCCAGAAT
2699172 CCCAGCCGCCTCTGATGCTTCCAGAAT
1 CCCAGCCGCCTCTGATGCTTCCAGAAT
*
2699199 CCCAGCCGCCTCTGATGCTTCAAGAAT
1 CCCAGCCGCCTCTGATGCTTCCAGAAT
2699226 CCCAGCCGCC
1 CCCAGCCGCC
2699236 GCCTCACTGC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.20, C:0.43, G:0.18, T:0.20
Consensus pattern (27 bp):
CCCAGCCGCCTCTGATGCTTCCAGAAT
Found at i:2699503 original size:15 final size:16
Alignment explanation
Indices: 2699483--2699514 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
2699473 GACAACAAAC
2699483 AAAACAGAAAAA-AAA
1 AAAACAGAAAAAGAAA
2699498 AAAACAGAAAAAGAAA
1 AAAACAGAAAAAGAAA
2699514 A
1 A
2699515 GAGGACAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.84, C:0.06, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAACAGAAAAAGAAA
Found at i:2700466 original size:20 final size:18
Alignment explanation
Indices: 2700429--2700469 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
2700419 GTAGTATTTG
*
2700429 TATTTTTATATTTTTAAA
1 TATTTTTATATTTATAAA
2700447 TATTTTTATATATTCATAAA
1 TATTTTTATAT-TT-ATAAA
2700467 TAT
1 TAT
2700470 ATATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 2 0.10
20 7 0.35
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTTTTATATTTATAAA
Found at i:2700512 original size:13 final size:13
Alignment explanation
Indices: 2700494--2700532 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
2700484 GTAATTAAAT
2700494 TTTTAAATATTTA
1 TTTTAAATATTTA
*
2700507 TTTTAAATGAATTA
1 TTTTAAAT-ATTTA
2700521 TTTT-AATATTTA
1 TTTTAAATATTTA
2700533 GCTTTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 4 0.17
13 11 0.48
14 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
TTTTAAATATTTA
Found at i:2702345 original size:17 final size:18
Alignment explanation
Indices: 2702323--2702372 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
2702313 ATAATATATA
2702323 TATATATAA-TATAAAAT
1 TATATATAACTATAAAAT
*
2702340 TATATATAAACTATATAAT
1 TATATAT-AACTATAAAAT
2702359 TAT-TATAAACTATA
1 TATATAT-AACTATA
2702373 TATATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 7 0.23
18 13 0.43
19 10 0.33
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TATATATAACTATAAAAT
Found at i:2702345 original size:19 final size:19
Alignment explanation
Indices: 2702321--2702385 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
2702311 AAATAATATA
*
2702321 TATATATATAATATAAAAT
1 TATATATATAATATATAAT
2702340 TATATATA-AACTATATAAT
1 TATATATATAA-TATATAAT
*
2702359 TATTATAAACTATATATATAAT
1 TA-TATATA-TA-ATATATAAT
2702381 TATAT
1 TATAT
2702386 TTATGTGCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 2 0.05
19 17 0.44
20 5 0.13
21 3 0.08
22 11 0.28
23 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
TATATATATAATATATAAT
Found at i:2702442 original size:38 final size:39
Alignment explanation
Indices: 2702344--2702535 Score: 110
Period size: 38 Copynumber: 4.7 Consensus size: 39
2702334 TAAAATTATA
* * *
2702344 TATAAACTATATAATTATTATAAACTA--TATATATAAT
1 TATAAACTATATTACTATTATAAACTATGTATATAAAAT
** * *
2702381 TAT-ATTTATGTGCACTATATATAAACTATGTATATAAAAT
1 TATAAACTATAT-TACTAT-TATAAACTATGTATATAAAAT
* *
2702421 TATAAACTATATTA-TATTATAAACTATATATTATAAGCTAT
1 TATAAACTATATTACTATTATAAACTATGTA-TATAA--AAT
*
2702462 ATATAAATTATGTTTATGTGAACTATATATAAACTATG--TATAAAAT
1 -TATAAACTA----TAT-T--ACTAT-TATAAACTATGTATATAAAAT
2702508 TATAAACTATATTTA-TATTATAAACTAT
1 TATAAACTATA-TTACTATTATAAACTAT
2702536 ATAATTATTA
Statistics
Matches: 120, Mismatches: 16, Indels: 38
0.69 0.09 0.22
Matches are distributed among these distances:
36 5 0.04
37 17 0.14
38 24 0.20
39 9 0.08
40 13 0.11
41 10 0.08
42 9 0.08
45 8 0.07
46 5 0.04
47 1 0.01
48 5 0.04
49 1 0.01
50 3 0.03
51 10 0.08
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.43
Consensus pattern (39 bp):
TATAAACTATATTACTATTATAAACTATGTATATAAAAT
Found at i:2702442 original size:94 final size:94
Alignment explanation
Indices: 2702338--2702601 Score: 418
Period size: 94 Copynumber: 2.9 Consensus size: 94
2702328 ATAATATAAA
* * *
2702338 ATTATA-TATAAACTATATAATTATTATAAACTATATATATAATTATATTTATGTGCACTATATA
1 ATTATATTATAAACTATATAATTATTATAAGCTATATATATAATTATGTTTATGTGAACTATATA
2702402 TAAACTATGTATATAAAATTATAAACTAT
66 TAAACTATGTATATAAAATTATAAACTAT
2702431 ATTATATTATAAAC--TAT-A-TATTATAAGCTATATATA-AATTATGTTTATGTGAACTATATA
1 ATTATATTATAAACTATATAATTATTATAAGCTATATATATAATTATGTTTATGTGAACTATATA
2702491 TAAACTATG--TATAAAATTATAAACTAT
66 TAAACTATGTATATAAAATTATAAACTAT
*
2702518 ATTTATATTATAAACTATATAATTATTATAAGCTATATATATAAATTATGTTTATGTGAATTATA
1 A-TTATATTATAAACTATATAATTATTATAAGCTATATATAT-AATTATGTTTATGTGAACTATA
2702583 TATAAACTATGTATATAAA
64 TATAAACTATGTATATAAA
2702602 CTATATAGGT
Statistics
Matches: 157, Mismatches: 4, Indels: 17
0.88 0.02 0.10
Matches are distributed among these distances:
87 19 0.12
88 13 0.08
89 31 0.20
90 20 0.13
91 2 0.01
92 21 0.13
93 6 0.04
94 39 0.25
96 6 0.04
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (94 bp):
ATTATATTATAAACTATATAATTATTATAAGCTATATATATAATTATGTTTATGTGAACTATATA
TAAACTATGTATATAAAATTATAAACTAT
Found at i:2702452 original size:14 final size:14
Alignment explanation
Indices: 2702419--2702465 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 14
2702409 TGTATATAAA
2702419 ATTATAAACTATATTAT
1 ATTATAAAC--TA-TAT
2702436 ATTATAAACTATAT
1 ATTATAAACTATAT
*
2702450 ATTATAAGCTATAT
1 ATTATAAACTATAT
2702464 AT
1 AT
2702466 AAATTATGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 18 0.62
15 2 0.07
17 9 0.31
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (14 bp):
ATTATAAACTATAT
Found at i:2702565 original size:20 final size:20
Alignment explanation
Indices: 2702344--2702566 Score: 103
Period size: 18 Copynumber: 11.2 Consensus size: 20
2702334 TAAAATTATA
*
2702344 TATAAACTATATA-AT-TAT
1 TATAAACTATATATATAAAT
2702362 TATAAACTATATATAT-AAT
1 TATAAACTATATATATAAAT
** * ** *
2702381 TAT-ATTTATGTGCACTATA-
1 TATAAACTATATATA-TAAAT
*
2702400 TATAAACTATGTATATAAAAT
1 TATAAACTATATATAT-AAAT
2702421 TATAAACTATAT-TAT--AT
1 TATAAACTATATATATAAAT
2702438 TATAAACTATATATTATAAGCTAT
1 TATAAACTATATA-TATAA---AT
* * *
2702462 ATATAAATTATGTTTATGTGAACTAT
1 -TATAAACTA--TATATAT-AA--AT
*
2702488 ATATAAACTATGTATA-AAAT
1 -TATAAACTATATATATAAAT
*
2702508 TATAAACTATAT-T-TATAT
1 TATAAACTATATATATAAAT
*
2702526 TATAAACTATATA-AT-TAT
1 TATAAACTATATATATAAAT
*
2702544 TATAAGCTATATATATAAAT
1 TATAAACTATATATATAAAT
2702564 TAT
1 TAT
2702567 GTTTATGTGA
Statistics
Matches: 160, Mismatches: 23, Indels: 42
0.71 0.10 0.19
Matches are distributed among these distances:
17 14 0.09
18 50 0.31
19 29 0.18
20 20 0.12
21 11 0.07
22 2 0.01
24 6 0.04
25 8 0.05
26 15 0.09
27 5 0.03
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (20 bp):
TATAAACTATATATATAAAT
Found at i:2702614 original size:15 final size:13
Alignment explanation
Indices: 2702316--2702694 Score: 98
Period size: 13 Copynumber: 28.7 Consensus size: 13
2702306 GAAAAAAATA
*
2702316 ATATATATATA-T
1 ATATATATAAACT
*
2702328 ATA-ATATAAAAT
1 ATATATATAAACT
2702340 -TATATATAAACTAT
1 ATATATATAAAC--T
2702354 ATAATTATTATAAACT
1 AT-A-TA-TATAAACT
*
2702370 ATATATAT-AATT
1 ATATATATAAACT
* ***
2702382 ATATTTATGTGC-
1 ATATATATAAACT
2702394 ACTATATATAAACT
1 A-TATATATAAACT
* *
2702408 ATGTATATAAAAT
1 ATATATATAAACT
* * *
2702421 -TATAAACTATATT
1 ATATATA-TAAACT
2702434 ATAT-TATAAACT
1 ATATATATAAACT
*
2702446 ATATATTATAAGCT
1 ATATA-TATAAACT
2702460 ATATATA-AATTA-T
1 ATATATATAA--ACT
* * * *
2702473 GTTTATGTGAAC-
1 ATATATATAAACT
2702485 -TATATATAAACT
1 ATATATATAAACT
* *
2702497 ATGTATA-AAATT
1 ATATATATAAACT
* **
2702509 ATAAACTAT-ATTT
1 ATATA-TATAAACT
2702522 ATAT-TATAAACT
1 ATATATATAAACT
2702534 ATATAATTATTATAAGCT
1 ATAT-A-TA-TA-AA-CT
*
2702552 ATATATATAAATT
1 ATATATATAAACT
* * *
2702565 ATGTTTATGTGAA-T
1 A--TATATATAAACT
2702579 -TATATATAAACT
1 ATATATATAAACT
*
2702591 ATGTATATAAACT
1 ATATATATAAACT
2702604 ATATAGGTATAAACT
1 ATATA--TATAAACT
*
2702619 ACA-A-A-AAA-T
1 ATATATATAAACT
* *
2702628 ATAGTTTATAAAAT
1 ATA-TATATAAACT
2702642 ATATATATATATA-T
1 ATATATATA-A-ACT
2702656 ATATATATAAAACT
1 ATATATAT-AAACT
2702670 ATATATGTATAAACT
1 ATATA--TATAAACT
2702685 ATACTATATA
1 ATA-TATATA
2702695 GTTTATATGT
Statistics
Matches: 269, Mismatches: 50, Indels: 94
0.65 0.12 0.23
Matches are distributed among these distances:
9 3 0.01
10 3 0.01
11 27 0.10
12 52 0.19
13 71 0.26
14 49 0.18
15 33 0.12
16 13 0.05
17 5 0.02
18 13 0.05
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.42
Consensus pattern (13 bp):
ATATATATAAACT
Found at i:2702645 original size:2 final size:2
Alignment explanation
Indices: 2702640--2702795 Score: 96
Period size: 2 Copynumber: 79.0 Consensus size: 2
2702630 AGTTTATAAA
* * *
2702640 AT AT AT AT AT AT AT AT AT AT AT AT A- AA ACT AT AT AT GT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* * *
2702682 ACT AT ACT AT AT AGT TT AT AT GT -T AT A- AT TT AT AT -T A- AT
1 A-T AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* ** *
2702721 AT AGT AT AT AT AT GT AT GC AT A- ACT A- AT AT A- AGT AT AT AG
1 AT A-T AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A-T AT AT AT
2702761 A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2702796 TAAAGAAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 32
0.71 0.10 0.19
Matches are distributed among these distances:
1 9 0.07
2 103 0.85
3 9 0.07
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:2702649 original size:94 final size:92
Alignment explanation
Indices: 2702352--2702654 Score: 239
Period size: 94 Copynumber: 3.3 Consensus size: 92
2702342 TATATAAACT
* * * *
2702352 ATATAATTATTATAAA-CTATATATAT-AATTATATTTATGTGCACTATATATAAACTATGTATA
1 ATATAATTA-TAAAAAGATATATATATAAATTATGTTTATGTGAACTATATATAAACTATG--TA
* * * **
2702415 TAAAATTATAAACTATATTATATTATAAACT
63 TAAAACTATAAACTATA-TATACTACAAAAA
*
2702446 ATAT-ATTAT---AAG--CTATATATAAATTATGTTTATGTGAACTATATATAAACTATGTATAA
1 ATATAATTATAAAAAGATATATATATAAATTATGTTTATGTGAACTATATATAAACTATGTATAA
* * * **
2702505 AATTATAAACTATATTTATATTATAAACT
66 AACTATAAACTATA--TATACTACAAAAA
* * * *
2702534 ATATAATTATTATAAGCTATATATATAAATTATGTTTATGTGAATTATATATAAACTATGTATAT
1 ATATAATTATAAAAAGATATATATATAAATTATGTTTATGTGAACTATATATAAACTATGTATA-
**
2702599 AAACTATATAGGTATA-A-ACTACAAAAA
65 AAACTATA-AACTATATATACTACAAAAA
* *
2702626 ATATAGTTTATAAAATATATATATATATA
1 ATATA-ATTATAAAA-AGATATATATATA
2702655 TATATATATA
Statistics
Matches: 179, Mismatches: 17, Indels: 26
0.81 0.08 0.12
Matches are distributed among these distances:
87 19 0.11
88 25 0.14
89 38 0.21
92 15 0.08
93 11 0.06
94 59 0.33
95 7 0.04
96 5 0.03
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (92 bp):
ATATAATTATAAAAAGATATATATATAAATTATGTTTATGTGAACTATATATAAACTATGTATAA
AACTATAAACTATATATACTACAAAAA
Found at i:2702729 original size:66 final size:67
Alignment explanation
Indices: 2702576--2702730 Score: 151
Period size: 66 Copynumber: 2.3 Consensus size: 67
2702566 TGTTTATGTG
*
2702576 AATTATATATAAACTAT-GTATAT-AAACTATATAGGTATAAACTACAAAAAATATAGTTTATAA
1 AATT-TATATTAA-TATAGTATATAAAACTATATAGGTATAAACTA-AAAAAATATAGTTTATAA
2702639 AATAT
63 AATAT
* * * ** ***
2702644 -ATATATA-TATATATA-TATATAAAACTATATATGTATAAACT-ATACTATATAGTTTATATGT
1 AATTTATATTA-ATATAGTATATAAAACTATATAGGTATAAACTAAAAAAATATAGTTTATAAAA
2702705 TAT
65 TAT
2702708 AATTTATATTAATATAGTATATA
1 AATTTATATTAATATAGTATATA
2702731 TATGTATGCA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
64 17 0.24
65 20 0.28
66 32 0.45
67 2 0.03
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (67 bp):
AATTTATATTAATATAGTATATAAAACTATATAGGTATAAACTAAAAAAATATAGTTTATAAAAT
AT
Found at i:2702863 original size:7 final size:7
Alignment explanation
Indices: 2702853--2702894 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
2702843 TTATAAAAAT
2702853 CCTAAAC
1 CCTAAAC
*
2702860 CCTATAC
1 CCTAAAC
*
2702867 CCTAAAA
1 CCTAAAC
*
2702874 CATAAAC
1 CCTAAAC
2702881 CCTAAAC
1 CCTAAAC
2702888 CCTAAAC
1 CCTAAAC
2702895 TTTATAAACT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (7 bp):
CCTAAAC
Found at i:2703067 original size:42 final size:42
Alignment explanation
Indices: 2703009--2703118 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
2702999 ACAATAGTTA
*
2703009 ATATATGTAACTTATAGTATGTGTATACATGTAATGTAAACT
1 ATATATGTAACTTATAGTATATGTATACATGTAATGTAAACT
*
2703051 ATATATGTAACTTATAGTGTATGTATACATGTAATGTAAACT
1 ATATATGTAACTTATAGTATATGTATACATGTAATGTAAACT
* *
2703093 ATATATGTAACTTATAATACATGTAT
1 ATATATGTAACTTATAGTATATGTAT
2703119 GTATAAACTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (42 bp):
ATATATGTAACTTATAGTATATGTATACATGTAATGTAAACT
Found at i:2703277 original size:7 final size:7
Alignment explanation
Indices: 2703267--2703342 Score: 55
Period size: 7 Copynumber: 10.9 Consensus size: 7
2703257 ACTTGATAAT
2703267 CTAAACC
1 CTAAACC
2703274 CTAAACC
1 CTAAACC
2703281 CTAAACC
1 CTAAACC
* **
2703288 ATAAAAT
1 CTAAACC
* *
2703295 TTAAATC
1 CTAAACC
2703302 CTAAA-C
1 CTAAACC
*
2703308 CTTAACC
1 CTAAACC
* *
2703315 CTTACATC
1 C-TAAACC
*
2703323 ATAAACC
1 CTAAACC
2703330 CTAAACC
1 CTAAACC
2703337 CTAAAC
1 CTAAAC
2703343 ATAAAGAATA
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
6 5 0.10
7 44 0.85
8 3 0.06
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:2703277 original size:28 final size:26
Alignment explanation
Indices: 2703241--2703347 Score: 88
Period size: 28 Copynumber: 3.9 Consensus size: 26
2703231 TTATATAAAA
*
2703241 AAACTCTAAACCCTAAACTTGATAATCT
1 AAACCCTAAACCCTAAACTT-A-AATCT
* *
2703269 AAACCCTAAACCCTAAACCATAAAATTT
1 AAACCCTAAACCCTAAA-C-TTAAATCT
* * * *
2703297 AAATCCTAAACCTTAACCCTTACATCAT
1 AAACCCTAAACCCTAA-ACTTAAATC-T
*
2703325 AAACCCTAAACCCTAAACATAAA
1 AAACCCTAAACCCTAAACTTAAA
2703348 GAATAGTTAA
Statistics
Matches: 61, Mismatches: 14, Indels: 9
0.73 0.17 0.11
Matches are distributed among these distances:
27 8 0.13
28 50 0.82
29 2 0.03
30 1 0.02
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (26 bp):
AAACCCTAAACCCTAAACTTAAATCT
Done.