Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008772.1 Hibiscus syriacus cultivar Beakdansim tig00111877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3098974
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 16
Found at i:1039142 original size:30 final size:30
Alignment explanation
Indices: 1039072--1039144 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
1039062 GGTTCTTCGG
* *
1039072 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
1039102 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
1039132 GACCTCTGGATAG
1 GACCTCTGGATAG
1039145 GTCCTTCGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:1040245 original size:11 final size:11
Alignment explanation
Indices: 1040229--1040258 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
1040219 GCATGATATC
1040229 AGACAAAAGGG
1 AGACAAAAGGG
1040240 AGACAAAAGGG
1 AGACAAAAGGG
1040251 AGACAAAA
1 AGACAAAA
1040259 TGTCTTGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.60, C:0.10, G:0.30, T:0.00
Consensus pattern (11 bp):
AGACAAAAGGG
Found at i:1041394 original size:74 final size:75
Alignment explanation
Indices: 1041273--1041417 Score: 265
Period size: 74 Copynumber: 1.9 Consensus size: 75
1041263 ACTCTCTCTT
*
1041273 TTATTTTGATAGGTGTTTACAATTAATCAAGATAAATCATGTATGACTTAGTATAAAATCAATTT
1 TTATTTTCATAGGTGTTTACAATTAATCAAGATAAATCATGTATGACTTAGTATAAAATCAATTT
1041338 A-CAATATTC
66 ATCAATATTC
*
1041347 TTATTTTCATAGGTGTTTACAATTACTCAAGATAAATCATGTATGACTTAGTATAAAATCAATTT
1 TTATTTTCATAGGTGTTTACAATTAATCAAGATAAATCATGTATGACTTAGTATAAAATCAATTT
1041412 ATCAAT
66 ATCAAT
1041418 GTATTTTTAT
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 64 0.94
75 4 0.06
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (75 bp):
TTATTTTCATAGGTGTTTACAATTAATCAAGATAAATCATGTATGACTTAGTATAAAATCAATTT
ATCAATATTC
Found at i:1043558 original size:15 final size:15
Alignment explanation
Indices: 1043538--1043567 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1043528 ATGTCCTTTC
1043538 GGTCTATTCAATTTT
1 GGTCTATTCAATTTT
*
1043553 GGTCTATTTAATTTT
1 GGTCTATTCAATTTT
1043568 AGTCCCTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
GGTCTATTCAATTTT
Found at i:1045573 original size:18 final size:18
Alignment explanation
Indices: 1045550--1045591 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
1045540 GTCTCTCCTC
1045550 CTCATTTGTATTCATTTA
1 CTCATTTGTATTCATTTA
1045568 CTCATTTGTATTCATTTA
1 CTCATTTGTATTCATTTA
*
1045586 TTCATT
1 CTCATT
1045592 CATCCCTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.17, G:0.05, T:0.57
Consensus pattern (18 bp):
CTCATTTGTATTCATTTA
Found at i:1051946 original size:29 final size:29
Alignment explanation
Indices: 1051912--1051982 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
1051902 AACGATCATT
1051912 TTAATTATTAAATTTTTAAAAGTTATAAA
1 TTAATTATTAAATTTTTAAAAGTTATAAA
* * *
1051941 TTAATTAAT-ATTTTTTAAATGTTATAAA
1 TTAATTATTAAATTTTTAAAAGTTATAAA
*
1051969 AT-ATTCATTAAATT
1 TTAATT-ATTAAATT
1051983 GAACAGCTCG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 3 0.09
28 20 0.59
29 11 0.32
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (29 bp):
TTAATTATTAAATTTTTAAAAGTTATAAA
Found at i:1053016 original size:2 final size:2
Alignment explanation
Indices: 1053009--1053060 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
1052999 TGAATTTTAA
1053009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1053051 AT AT AT AT AT
1 AT AT AT AT AT
1053061 GTATGAAAGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1056664 original size:174 final size:175
Alignment explanation
Indices: 1056361--1056713 Score: 699
Period size: 174 Copynumber: 2.0 Consensus size: 175
1056351 GGAAACTTGA
1056361 GAGAATATATTCTTTTAACAGAACTGCGCCAAACTATTCAATGCTAGAATGTTACAATTGAATTA
1 GAGAATATATTCTTTTAACAGAACTGCGCCAAACTATTCAATGCTAGAATGTTACAATTGAATTA
1056426 TGAATACGGCATCTTACCTGTCCATAGAGTCCCCATCCAAAAGTAAGTAGTGCTCCAGCATCTGT
66 TGAATACGGCATCTTACCTGTCCATAGAGTCCCCATCCAAAAGTAAGTAGTGCTCCAGCATCTGT
1056491 TAAGGCACCATATTGCTTAATGTGATAATGGTATCAATCTAATTT
131 TAAGGCACCATATTGCTTAATGTGATAATGGTATCAATCTAATTT
1056536 GAGAATATATTC-TTTAACAGAACTGCGCCAAACTATTCAATGCTAGAATGTTACAATTGAATTA
1 GAGAATATATTCTTTTAACAGAACTGCGCCAAACTATTCAATGCTAGAATGTTACAATTGAATTA
1056600 TGAATACGGCATCTTACCTGTCCATAGAGTCCCCATCCAAAAGTAAGTAGTGCTCCAGCATCTGT
66 TGAATACGGCATCTTACCTGTCCATAGAGTCCCCATCCAAAAGTAAGTAGTGCTCCAGCATCTGT
1056665 TAAGGCACCATATTGCTTAATGTGATAATGGTATCAATCTAATTT
131 TAAGGCACCATATTGCTTAATGTGATAATGGTATCAATCTAATTT
1056710 GAGA
1 GAGA
1056714 TGAACAATTA
Statistics
Matches: 178, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
174 166 0.93
175 12 0.07
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (175 bp):
GAGAATATATTCTTTTAACAGAACTGCGCCAAACTATTCAATGCTAGAATGTTACAATTGAATTA
TGAATACGGCATCTTACCTGTCCATAGAGTCCCCATCCAAAAGTAAGTAGTGCTCCAGCATCTGT
TAAGGCACCATATTGCTTAATGTGATAATGGTATCAATCTAATTT
Found at i:1059712 original size:65 final size:65
Alignment explanation
Indices: 1059608--1059737 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
1059598 CGTAAGACGA
1059608 GCACGCTGGGATCGAAATCCACGTGGCGTAACATGAGCCGGTAGATTCCTCAGCGTTTTCTAGCC
1 GCACGCTGGGATCGAAATCCACGTGGCGTAACATGAGCCGGTAGATTCCTCAGCGTTTTCTAGCC
1059673 GCACGCTGGGATCGAAATCCACGTGGCGTAACATGAGCCGGTAGATTCCTCAGCGTTTTCTAGCC
1 GCACGCTGGGATCGAAATCCACGTGGCGTAACATGAGCCGGTAGATTCCTCAGCGTTTTCTAGCC
1059738 AGTAGTTGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (65 bp):
GCACGCTGGGATCGAAATCCACGTGGCGTAACATGAGCCGGTAGATTCCTCAGCGTTTTCTAGCC
Found at i:1068021 original size:20 final size:20
Alignment explanation
Indices: 1067992--1068029 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1067982 TTTCAAAGGG
1067992 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCACCAATCC
*
1068012 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
1068030 GAATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCC
Found at i:1068109 original size:65 final size:64
Alignment explanation
Indices: 1067992--1068199 Score: 235
Period size: 65 Copynumber: 3.2 Consensus size: 64
1067982 TTTCAAAGGG
* * ** **
1067992 ATGCACCGATGCACCAATCCATGCATCGATGCAC-CAATGAATAAATTG-AACATCGAATGCATT
1 ATGCATCGATGCA-CAAGCCATGCATCGATGCACTC-A-GGCTATTTTGAAACATCGAATGCATT
1068055 TT
63 TT
* *
1068057 ATGCATCGATGCACATA-CCATGCATCGATGCACTGAGGGT-TTTATGAAAACATCGAATGCATT
1 ATGCATCGATGCACA-AGCCATGCATCGATGCACTCAGGCTATTT-TG-AAACATCGAATGCATT
1068120 TT
63 TT
* * *
1068122 ATGCATCGATGCACAAGTCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCACTTC
1 ATGCATCGATGCACAAGCCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTT
1068186 ATGCATCGATGCAC
1 ATGCATCGATGCAC
1068200 CGATGCACTA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 50 0.40
65 67 0.54
66 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (64 bp):
ATGCATCGATGCACAAGCCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTT
Found at i:1069724 original size:21 final size:21
Alignment explanation
Indices: 1069655--1069753 Score: 123
Period size: 21 Copynumber: 4.7 Consensus size: 21
1069645 TTCGATGTTT
1069655 GGATGCATGGATGCATTGCA-
1 GGATGCATGGATGCATTGCAG
* *
1069675 TGATGCATCGATGCATT--AG
1 GGATGCATGGATGCATTGCAG
1069694 TGTAGATGCATGGATGCATTGCAG
1 -G--GATGCATGGATGCATTGCAG
*
1069718 GGATGCATGGATGCACTGCAG
1 GGATGCATGGATGCATTGCAG
1069739 GGATGCATGGATGCA
1 GGATGCATGGATGCA
1069754 CTTTGACACC
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
18 1 0.01
20 15 0.22
21 34 0.50
22 15 0.22
23 1 0.01
24 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.25
Consensus pattern (21 bp):
GGATGCATGGATGCATTGCAG
Found at i:1069856 original size:29 final size:30
Alignment explanation
Indices: 1069824--1069890 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
1069814 AAACCTTTTG
*
1069824 AAAACATTGAATAAATTC-ATTCAAATCCA
1 AAAACATTGAACAAATTCAATTCAAATCCA
*** *
1069853 AAAACATTTTGCAAATTCAATTCAAGTCCA
1 AAAACATTGAACAAATTCAATTCAAATCCA
1069883 AAAACATT
1 AAAACATT
1069891 TGCCTTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.28
Consensus pattern (30 bp):
AAAACATTGAACAAATTCAATTCAAATCCA
Found at i:1071459 original size:13 final size:14
Alignment explanation
Indices: 1071441--1071471 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1071431 GAGCCTACCT
1071441 CTTTCTT-ATCTTC
1 CTTTCTTCATCTTC
1071454 CTTTCTTCATCTTC
1 CTTTCTTCATCTTC
1071468 CTTT
1 CTTT
1071472 ACATCATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.06, C:0.32, G:0.00, T:0.61
Consensus pattern (14 bp):
CTTTCTTCATCTTC
Found at i:1072898 original size:12 final size:12
Alignment explanation
Indices: 1072881--1072942 Score: 68
Period size: 12 Copynumber: 5.8 Consensus size: 12
1072871 CTTGATGCAT
1072881 GGATGCATCGCA
1 GGATGCATCGCA
1072893 GGATGCAT--C-
1 GGATGCATCGCA
1072902 -GATGCATCGCA
1 GGATGCATCGCA
1072913 GGATGCAT--C-
1 GGATGCATCGCA
1072922 -GATGCATCGCA
1 GGATGCATCGCA
1072933 GGATGCATCG
1 GGATGCATCG
1072943 ATGCATGGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
8 14 0.33
10 4 0.10
12 24 0.57
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.19
Consensus pattern (12 bp):
GGATGCATCGCA
Found at i:1072899 original size:20 final size:20
Alignment explanation
Indices: 1072874--1072988 Score: 185
Period size: 20 Copynumber: 5.7 Consensus size: 20
1072864 TTGCAGCCTT
*
1072874 GATGCATGGATGCATCGCAG
1 GATGCATCGATGCATCGCAG
1072894 GATGCATCGATGCATCGCAG
1 GATGCATCGATGCATCGCAG
1072914 GATGCATCGATGCATCGCAG
1 GATGCATCGATGCATCGCAG
*
1072934 GATGCATCGATGCATGGCAAG
1 GATGCATCGATGCATCGC-AG
* *
1072955 GATGCATCGATGCATAGCAA
1 GATGCATCGATGCATCGCAG
1072975 GATGCATCGATGCA
1 GATGCATCGATGCA
1072989 CTAATTGCAT
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
20 71 0.79
21 19 0.21
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (20 bp):
GATGCATCGATGCATCGCAG
Found at i:1073057 original size:22 final size:20
Alignment explanation
Indices: 1073009--1073067 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
1072999 TCGATGTTTG
1073009 GATGCATAGATGCATTGTAT
1 GATGCATAGATGCATTGTAT
*
1073029 GATGCATCGATGCATTAGTGCA-
1 GATGCATAGATGCATT-GT--AT
*
1073051 GATGCATGGATGCATTG
1 GATGCATAGATGCATTG
1073068 CAGGGATGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 15 0.44
21 3 0.09
22 15 0.44
23 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (20 bp):
GATGCATAGATGCATTGTAT
Found at i:1073062 original size:8 final size:8
Alignment explanation
Indices: 1073051--1073114 Score: 59
Period size: 8 Copynumber: 8.8 Consensus size: 8
1073041 CATTAGTGCA
1073051 GATGCATG
1 GATGCATG
1073059 GATGCAT-
1 GATGCATG
*
1073066 --TGCAGG
1 GATGCATG
1073072 GATGCATG
1 GATGCATG
1073080 GATGCA--
1 GATGCATG
* *
1073086 -CTGCAGG
1 GATGCATG
1073093 GATGCATG
1 GATGCATG
1073101 GATGCATG
1 GATGCATG
1073109 GATGCA
1 GATGCA
1073115 CTTTGACACC
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
5 8 0.18
8 37 0.82
ACGTcount: A:0.25, C:0.16, G:0.38, T:0.22
Consensus pattern (8 bp):
GATGCATG
Found at i:1073077 original size:21 final size:21
Alignment explanation
Indices: 1073008--1073107 Score: 107
Period size: 21 Copynumber: 4.8 Consensus size: 21
1072998 TTCGATGTTT
* *
1073008 GGATGCATAGATGCATTGTA-
1 GGATGCATGGATGCATTGCAG
* *
1073028 TGATGCATCGATGCATT--AG
1 GGATGCATGGATGCATTGCAG
1073047 TGCAGATGCATGGATGCATTGCAG
1 -G--GATGCATGGATGCATTGCAG
*
1073071 GGATGCATGGATGCACTGCAG
1 GGATGCATGGATGCATTGCAG
1073092 GGATGCATGGATGCAT
1 GGATGCATGGATGCAT
1073108 GGATGCACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
18 1 0.01
20 15 0.22
21 34 0.50
22 15 0.22
23 1 0.01
24 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (21 bp):
GGATGCATGGATGCATTGCAG
Found at i:1073256 original size:30 final size:30
Alignment explanation
Indices: 1073199--1073258 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
1073189 AACTTTGAAT
*
1073199 AAATTCAATTCAAATCCAAAAACATTTTGC
1 AAATCCAATTCAAATCCAAAAACATTTTGC
*
1073229 AAATCCAATTCAAGTCCAAAAACATTTTGC
1 AAATCCAATTCAAATCCAAAAACATTTTGC
1073259 CTTAAATTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.28
Consensus pattern (30 bp):
AAATCCAATTCAAATCCAAAAACATTTTGC
Found at i:1078157 original size:17 final size:17
Alignment explanation
Indices: 1078135--1078175 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
1078125 TTCTTTGCTA
1078135 TTATAAATGAAAAATGC
1 TTATAAATGAAAAATGC
1078152 TTATAAATGAAAAATGC
1 TTATAAATGAAAAATGC
1078169 TTATAAA
1 TTATAAA
1078176 CACTTAGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (17 bp):
TTATAAATGAAAAATGC
Found at i:1078420 original size:23 final size:23
Alignment explanation
Indices: 1078352--1078430 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 23
1078342 TTGTGCTTCA
1078352 TGCATCGATGCA-TCCTTGAATG
1 TGCATCGATGCACTCCTTGAATG
* * * *
1078374 TGCATTGAT--ACACCATGAAGG
1 TGCATCGATGCACTCCTTGAATG
*
1078395 TGCACCGATGCACTCCTTGAATG
1 TGCATCGATGCACTCCTTGAATG
1078418 TGCATCGATGCAC
1 TGCATCGATGCAC
1078431 AAGGCCATGC
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.02
21 14 0.32
22 8 0.18
23 21 0.48
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (23 bp):
TGCATCGATGCACTCCTTGAATG
Found at i:1078447 original size:43 final size:41
Alignment explanation
Indices: 1078350--1078451 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 41
1078340 TTTTGTGCTT
* * *
1078350 CATGCATCGATGCATCCTTGAATGTGCATTGATACACCATG
1 CATGCATCGATGCATCCTTGAATGTGCATCGATACACAAGG
* * *
1078391 AAGGTGCACCGATGCACTCCTTGAATGTGCATCGATGCACAAGG
1 CA--TGCATCGATGCA-TCCTTGAATGTGCATCGATACACAAGG
1078435 CCATGCATCGATGCATC
1 -CATGCATCGATGCATC
1078452 TGTCGGGTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.02
42 2 0.04
43 22 0.45
44 23 0.47
45 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (41 bp):
CATGCATCGATGCATCCTTGAATGTGCATCGATACACAAGG
Found at i:1079088 original size:37 final size:37
Alignment explanation
Indices: 1079045--1079119 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
1079035 GATTGATCAT
1079045 TGTGCATACATGTGTTTCAAATTACAGGTTTCATTCC
1 TGTGCATACATGTGTTTCAAATTACAGGTTTCATTCC
*
1079082 TGTGCATACATGTGTTTCAAATTGCAGGTTTCATTCC
1 TGTGCATACATGTGTTTCAAATTACAGGTTTCATTCC
1079119 T
1 T
1079120 TATTCCGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (37 bp):
TGTGCATACATGTGTTTCAAATTACAGGTTTCATTCC
Found at i:1080403 original size:20 final size:20
Alignment explanation
Indices: 1080374--1080411 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1080364 TTTCAAAGGG
1080374 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCACCAATCC
*
1080394 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
1080412 GAATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCC
Found at i:1080542 original size:64 final size:65
Alignment explanation
Indices: 1080439--1080562 Score: 171
Period size: 64 Copynumber: 1.9 Consensus size: 65
1080429 AATGCATTTT
* * *
1080439 ATGCATCGATGCACTGAGGGTTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACAAGTC
1 ATGCATCGATGCACTCAGGGTTTTATGAAAACATCGAATGCACTTCATGCATCGATGCACAAGTC
* **
1080504 ATGCATCGATGCACTCA-GGTTATTTTG-ATTCATCGAATGCACTTCATGCATCGATGCAC
1 ATGCATCGATGCACTCAGGGTT-TTATGAAAACATCGAATGCACTTCATGCATCGATGCAC
1080563 TCAGGCTATT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 32 0.62
65 20 0.38
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (65 bp):
ATGCATCGATGCACTCAGGGTTTTATGAAAACATCGAATGCACTTCATGCATCGATGCACAAGTC
Found at i:1080558 original size:45 final size:45
Alignment explanation
Indices: 1080502--1080609 Score: 180
Period size: 45 Copynumber: 2.4 Consensus size: 45
1080492 GATGCACAAG
* * **
1080502 TCATGCATCGATGCACTCAGGTTATTTTGATTCATCGAATGCACT
1 TCATGCATCGATGCACTCAGGCTATTTTAAAACATCGAATGCACT
1080547 TCATGCATCGATGCACTCAGGCTATTTTAAAACATCGAATGCACT
1 TCATGCATCGATGCACTCAGGCTATTTTAAAACATCGAATGCACT
1080592 TCATGCATCGATGCACTC
1 TCATGCATCGATGCACTC
1080610 TTAGTGCACC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (45 bp):
TCATGCATCGATGCACTCAGGCTATTTTAAAACATCGAATGCACT
Found at i:1080607 original size:17 final size:19
Alignment explanation
Indices: 1080579--1080627 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1080569 TATTTTAAAA
1080579 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
1080597 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
1080616 CACCGATGCACT
1 CATCGATGCACT
1080628 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:1080627 original size:109 final size:110
Alignment explanation
Indices: 1080424--1080627 Score: 279
Period size: 109 Copynumber: 1.9 Consensus size: 110
1080414 ATAAATTGAA
* * * * * *
1080424 CATCGAATGCATTTTATGCATCGATGCACTGAGGGTTTTATGAAAACATCGAATGCATTTGATGC
1 CATCGAATGCACTTCATGCATCGATGCACTCAGGCTTTTATGAAAACATCGAATGCACTTCATGC
* *
1080489 ATCGATGCACAAGTCATGCATCGATGCACTCAGGTTATTTTGATT
66 ATCGATGCACAACTCATGCACCGATGCACTCAGGTTATTTTGATT
1080534 CATCGAATGCACTTCATGCATCGATGCACTCAGGCTATTT-T-AAAACATCGAATGCACTTCATG
1 CATCGAATGCACTTCATGCATCGATGCACTCAGGCT-TTTATGAAAACATCGAATGCACTTCATG
* *
1080597 CATCGATGCAC-TCTTAGTGCACCGATGCACT
65 CATCGATGCACAACTCA-TGCACCGATGCACT
1080628 AAGGGTCCAA
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
108 2 0.02
109 44 0.54
110 33 0.40
111 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (110 bp):
CATCGAATGCACTTCATGCATCGATGCACTCAGGCTTTTATGAAAACATCGAATGCACTTCATGC
ATCGATGCACAACTCATGCACCGATGCACTCAGGTTATTTTGATT
Found at i:1082067 original size:17 final size:17
Alignment explanation
Indices: 1082026--1082070 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
1082016 CCCTTCTTGA
1082026 TTAAATATTTAATAAAT
1 TTAAATATTTAATAAAT
** **
1082043 TTTTATATTTTTTAAAT
1 TTAAATATTTAATAAAT
1082060 TTAAATATTTA
1 TTAAATATTTA
1082071 TTTTTACCTG
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTAAATATTTAATAAAT
Found at i:1086875 original size:20 final size:19
Alignment explanation
Indices: 1086836--1086905 Score: 106
Period size: 20 Copynumber: 3.6 Consensus size: 19
1086826 AAGAATGTTT
1086836 TATGAATAGTACCG-TACTG
1 TATGAATAGTA-CGATACTG
1086855 TATGAATAGTATCGATACTG
1 TATGAATAGTA-CGATACTG
1086875 TATGAATAGTACTGATACTG
1 TATGAATAGTAC-GATACTG
1086895 TATGAATAGTA
1 TATGAATAGTA
1086906 GTATTGATAC
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
19 14 0.29
20 34 0.71
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (19 bp):
TATGAATAGTACGATACTG
Found at i:1086921 original size:21 final size:22
Alignment explanation
Indices: 1086881--1086926 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
1086871 ACTGTATGAA
*
1086881 TAGTACTGATACTGTATGAATAG
1 TAGTACTGATAC-GTATGAACAG
*
1086904 TAGTATTGATAC-TATGAACAG
1 TAGTACTGATACGTATGAACAG
1086925 TA
1 TA
1086927 CTGATGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
23 11 0.52
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35
Consensus pattern (22 bp):
TAGTACTGATACGTATGAACAG
Found at i:1087003 original size:21 final size:21
Alignment explanation
Indices: 1086977--1087030 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
1086967 ACTGCTACAA
1086977 TAGTATCGATACCATGAACAG
1 TAGTATCGATACCATGAACAG
*
1086998 TAGTATCGATACCGTGAACAG
1 TAGTATCGATACCATGAACAG
1087019 TAGTATCGATAC
1 TAGTATCGATAC
1087031 TATCAAGCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (21 bp):
TAGTATCGATACCATGAACAG
Found at i:1089914 original size:123 final size:123
Alignment explanation
Indices: 1089719--1089966 Score: 487
Period size: 123 Copynumber: 2.0 Consensus size: 123
1089709 CTCATATTGT
*
1089719 TTGTATTAAGTTTAAGAGTATAATATTTATTTGCAGGTTGATAAAATAAATAGATAGAATAAATG
1 TTGTATTAAGTTTAAGAGTATAATATTTATTTGCAGGTTGATAAAATAAATAGATAGAACAAATG
1089784 GAACAGCTCTTCCAAAAAGACATAAATGAATTTAAATTTTGATAGACGAAGGGTTTGG
66 GAACAGCTCTTCCAAAAAGACATAAATGAATTTAAATTTTGATAGACGAAGGGTTTGG
1089842 TTGTATTAAGTTTAAGAGTATAATATTTATTTGCAGGTTGATAAAATAAATAGATAGAACAAATG
1 TTGTATTAAGTTTAAGAGTATAATATTTATTTGCAGGTTGATAAAATAAATAGATAGAACAAATG
1089907 GAACAGCTCTTCCAAAAAGACATAAATGAATTTAAATTTTGATAGACGAAGGGTTTGG
66 GAACAGCTCTTCCAAAAAGACATAAATGAATTTAAATTTTGATAGACGAAGGGTTTGG
1089965 TT
1 TT
1089967 ACATAATTGT
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (123 bp):
TTGTATTAAGTTTAAGAGTATAATATTTATTTGCAGGTTGATAAAATAAATAGATAGAACAAATG
GAACAGCTCTTCCAAAAAGACATAAATGAATTTAAATTTTGATAGACGAAGGGTTTGG
Found at i:1091445 original size:28 final size:25
Alignment explanation
Indices: 1091412--1091490 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 25
1091402 TCTTTAAGGT
1091412 ATATTTTATTATATTTAGCATTTTGTTA
1 ATATTTTATTATATTTA--ATTTT-TTA
*
1091440 GTATTTTATTTAACTATTTAATTTTTTA
1 ATATTTTA-TT-A-TATTTAATTTTTTA
1091468 ATATTTTATT-TATTTAATTTTTT
1 ATATTTTATTATATTTAATTTTTT
1091491 TGTAGTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
24 13 0.28
27 2 0.04
28 17 0.37
29 7 0.15
30 1 0.02
31 6 0.13
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.66
Consensus pattern (25 bp):
ATATTTTATTATATTTAATTTTTTA
Found at i:1091467 original size:16 final size:16
Alignment explanation
Indices: 1091444--1091485 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
1091434 TTGTTAGTAT
1091444 TTTATTTAACTATTTAA
1 TTTATTTAA-TATTTAA
*
1091461 TTT-TTTAATATTTTA
1 TTTATTTAATATTTAA
1091476 TTTATTTAAT
1 TTTATTTAAT
1091486 TTTTTTGTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 9 0.39
16 11 0.48
17 3 0.13
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATTTAATATTTAA
Found at i:1091490 original size:16 final size:16
Alignment explanation
Indices: 1091444--1091489 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
1091434 TTGTTAGTAT
*
1091444 TTTATTTAACTATTTAA
1 TTTATTTAA-TATTTTA
1091461 TTT-TTTAATATTTTA
1 TTTATTTAATATTTTA
1091476 TTTATTTAAT-TTTT
1 TTTATTTAATATTTT
1091490 TTGTAGTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 13 0.48
16 11 0.41
17 3 0.11
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTTAATATTTTA
Found at i:1093771 original size:34 final size:33
Alignment explanation
Indices: 1093733--1093820 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 33
1093723 TAATACTTAC
1093733 TTTATTTTGTTAATTTAGTTAGACTTTTT-TTAAA
1 TTTATTTTGTTAATTT-GTTAGACTTTTTGTT-AA
* *
1093767 TTTATTTTGTTAAATTTTTTGGACTTTTTGTTAA
1 TTTATTTTGTT-AATTTGTTAGACTTTTTGTTAA
*
1093801 TGTATTTTGTTAATATTGTT
1 TTTATTTTGTTAAT-TTGTT
1093821 TATTACCATT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 3 0.06
34 37 0.79
35 7 0.15
ACGTcount: A:0.23, C:0.02, G:0.11, T:0.64
Consensus pattern (33 bp):
TTTATTTTGTTAATTTGTTAGACTTTTTGTTAA
Found at i:1098167 original size:17 final size:17
Alignment explanation
Indices: 1098139--1098174 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
1098129 AAAATAAATT
1098139 TTTGATTATAAAAATGAC
1 TTTGATTATAAAAA-GAC
1098157 TTTGA-TATAAAAAGAC
1 TTTGATTATAAAAAGAC
1098173 TT
1 TT
1098175 AAACTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 8 0.44
18 5 0.28
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (17 bp):
TTTGATTATAAAAAGAC
Found at i:1100824 original size:2 final size:2
Alignment explanation
Indices: 1100817--1100867 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
1100807 TTACCATCAC
1100817 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1100859 TA TA TA TA T
1 TA TA TA TA T
1100868 GACGAAAATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1108256 original size:21 final size:21
Alignment explanation
Indices: 1108230--1108269 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1108220 CCCCCTTTGA
*
1108230 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
1108251 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
1108270 TGGGGTACTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:1117347 original size:39 final size:39
Alignment explanation
Indices: 1117274--1117357 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
1117264 AGCTAAATAT
* *
1117274 GAAGACTCTACGACTACATGACATCTTCAAGCAAA-TGAA
1 GAAGACTCTACGACTACAAGACATATTCAAGCAAATTG-A
* * * *
1117313 GAAGACTTTACGACTGCAAGACGTATTCAGGCAAATTGA
1 GAAGACTCTACGACTACAAGACATATTCAAGCAAATTGA
1117352 GAAGAC
1 GAAGAC
1117358 CCTAGGAGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 36 0.95
40 2 0.05
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (39 bp):
GAAGACTCTACGACTACAAGACATATTCAAGCAAATTGA
Found at i:1120195 original size:27 final size:27
Alignment explanation
Indices: 1120165--1120216 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1120155 ACATCAACAC
* *
1120165 ATATCCATCACATTTATTCAAATATTG
1 ATATCAATCACATTCATTCAAATATTG
*
1120192 ATATTAATCACATTCATTCAAATAT
1 ATATCAATCACATTCATTCAAATAT
1120217 AACATCAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (27 bp):
ATATCAATCACATTCATTCAAATATTG
Found at i:1123016 original size:16 final size:16
Alignment explanation
Indices: 1122995--1123033 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
1122985 AATTTGTGAC
1122995 ATATTAGATTAAAATT
1 ATATTAGATTAAAATT
*
1123011 ATATTAGATTAAAGTT
1 ATATTAGATTAAAATT
1123027 ACTATTA
1 A-TATTA
1123034 TTATTATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (16 bp):
ATATTAGATTAAAATT
Found at i:1123229 original size:47 final size:47
Alignment explanation
Indices: 1123139--1123237 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
1123129 CAAAATCAGT
** **
1123139 ATTATTTTAATGTTTTTACTAAAAATACTAAATCAAATGTTGAT-ATA
1 ATTATTTTAACATTTTTACTAAAAATACTAAATCAAACATTGATCA-A
* *
1123186 ATTATTTTAACATTTTTACTAGAAATGCTAAATCAAACATTGATCAA
1 ATTATTTTAACATTTTTACTAAAAATACTAAATCAAACATTGATCAA
1123233 ATTAT
1 ATTAT
1123238 ACTAATGATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 44 0.98
48 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (47 bp):
ATTATTTTAACATTTTTACTAAAAATACTAAATCAAACATTGATCAA
Found at i:1123856 original size:28 final size:28
Alignment explanation
Indices: 1123824--1123899 Score: 118
Period size: 28 Copynumber: 2.7 Consensus size: 28
1123814 AAATAGAGAT
*
1123824 ATTTTATTTGAATAATA-TTTCAAACAAA
1 ATTTTATTCGAATAATACTTT-AAACAAA
*
1123852 ATTTTATTCGAATAATACTTTAAATAAA
1 ATTTTATTCGAATAATACTTTAAACAAA
1123880 ATTTTATTCGAATAATACTT
1 ATTTTATTCGAATAATACTT
1123900 ACAAATTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 42 0.93
29 3 0.07
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (28 bp):
ATTTTATTCGAATAATACTTTAAACAAA
Found at i:1124280 original size:39 final size:38
Alignment explanation
Indices: 1124184--1124293 Score: 123
Period size: 39 Copynumber: 2.9 Consensus size: 38
1124174 TTGTTTCTGT
* *
1124184 ATGGCCTGAAGACGTCGTACATTCC-AGAGTCTTATAC
1 ATGGCCTGAAGACGCCGTACATTCCTGGAGTCTTATAC
* * * * *
1124221 ATGGCCCGAAGATGCTGTACACTCCTGGAGTCTTATCC
1 ATGGCCTGAAGACGCCGTACATTCCTGGAGTCTTATAC
* *
1124259 ATTGGCCTGAAGACACCGTACATTCTTGGAGTCTT
1 A-TGGCCTGAAGACGCCGTACATTCCTGGAGTCTT
1124294 TAAGTTTGGT
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
37 20 0.34
38 11 0.19
39 27 0.47
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (38 bp):
ATGGCCTGAAGACGCCGTACATTCCTGGAGTCTTATAC
Found at i:1124838 original size:22 final size:21
Alignment explanation
Indices: 1124812--1124870 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
1124802 TCACCTTCTT
1124812 TAAAAATTAAATAAAAATGTAA
1 TAAAAATTAAATAAAAATG-AA
* * *
1124834 TAAAAATGAATTAAGAATGAA
1 TAAAAATTAAATAAAAATGAA
*
1124855 T-AAAATTTAATAAAAA
1 TAAAAATTAAATAAAAA
1124871 ATATAATGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 11 0.37
21 3 0.10
22 16 0.53
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (21 bp):
TAAAAATTAAATAAAAATGAA
Found at i:1130500 original size:31 final size:30
Alignment explanation
Indices: 1130462--1130522 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
1130452 TAATATACTG
*
1130462 ATTTATATGTATTTATCCTTTATTTT-TTTTA
1 ATTTATATGCATTTAT-CTTT-TTTTATTTTA
1130493 ATTTATATGCATTTATCTTTTTTTATTTTA
1 ATTTATATGCATTTATCTTTTTTTATTTTA
1130523 TATTGTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 4 0.14
30 9 0.32
31 15 0.54
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (30 bp):
ATTTATATGCATTTATCTTTTTTTATTTTA
Found at i:1133763 original size:91 final size:92
Alignment explanation
Indices: 1133651--1133854 Score: 225
Period size: 93 Copynumber: 2.2 Consensus size: 92
1133641 TTGTGACGGG
* * * * *
1133651 TCCACATGTTCCATCATAAAATTTATAG-CTTTTTTAGTT-ACACGCTAATTACCTCCAATTTCC
1 TCCACATGTTCCGTCACAAAATTTAGAGTCTTTTTTAATTAAC-CACTAATTACCTCCAATTT-C
* * *
1133714 CTTC-ATTGAAACATAAATTTTATGAAGG
64 CATCAATTGAAACATAAAATTTATGAAGA
* * * * *
1133742 TTCACATGTTCCGTCACAAAATTTAGAGTTTTTTTTTAATTAACCACTCATTTCTTCCAATTTCC
1 TCCACATGTTCCGTCACAAAATTTAGAG-TCTTTTTTAATTAACCACTAATTACCTCCAATTTCC
* *
1133807 ATCAATTGAAACATAAAATTTGTGACGA
65 ATCAATTGAAACATAAAATTTATGAAGA
1133835 TCCACATGTTCCGTCACAAA
1 TCCACATGTTCCGTCACAAA
1133855 TTTGTAACGG
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
91 24 0.26
92 4 0.04
93 63 0.68
94 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (92 bp):
TCCACATGTTCCGTCACAAAATTTAGAGTCTTTTTTAATTAACCACTAATTACCTCCAATTTCCA
TCAATTGAAACATAAAATTTATGAAGA
Found at i:1133858 original size:30 final size:30
Alignment explanation
Indices: 1133822--1133887 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
1133812 TTGAAACATA
*
1133822 AAATTTGTGAC-GATCCACATGTTCCGTCAC
1 AAATTTGTAACGGATCCACATGTTCC-TCAC
*
1133852 AAATTTGTAACGGGTCCACATGTTCCTCAC
1 AAATTTGTAACGGATCCACATGTTCCTCAC
1133882 AAATTT
1 AAATTT
1133888 TAGAGTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 20 0.61
31 13 0.39
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (30 bp):
AAATTTGTAACGGATCCACATGTTCCTCAC
Found at i:1134014 original size:91 final size:91
Alignment explanation
Indices: 1133852--1134040 Score: 245
Period size: 91 Copynumber: 2.1 Consensus size: 91
1133842 GTTCCGTCAC
* * * *
1133852 AAATTTGTAACGGGTCCACATGTTCCTCACAAATTTTAGAGTTATTTTTAATTACCTGCTCATTT
1 AAATTTATAACGGGTCCACATGTTCATCACAAAATTTAGAG-TATTTTTAATTACCCGCTCATTT
*
1133917 CTTCCAATTTCCCTCCAGTGAAACATA
65 CCTCCAATTTCCCTCCAGTGAAACATA
* * * * *
1133944 AAATTTATAACGGGTTCATATGTTCTATCACAAAATTTAGAG-GTTTTTACTTACCCGCTTATTT
1 AAATTTATAACGGGTCCACATGTTC-ATCACAAAATTTAGAGTATTTTTAATTACCCGCTCATTT
* *
1134008 CCTCCAATTTCCCTCTATTGAAACATA
65 CCTCCAATTTCCCTCCAGTGAAACATA
1134035 AAATTT
1 AAATTT
1134041 CAAATATACC
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
91 48 0.57
92 22 0.26
93 14 0.17
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (91 bp):
AAATTTATAACGGGTCCACATGTTCATCACAAAATTTAGAGTATTTTTAATTACCCGCTCATTTC
CTCCAATTTCCCTCCAGTGAAACATA
Found at i:1135495 original size:62 final size:62
Alignment explanation
Indices: 1135421--1135550 Score: 215
Period size: 62 Copynumber: 2.1 Consensus size: 62
1135411 TTTAAATATC
* *
1135421 CCGATGGAAAAGACATGTTCCTCGGAAACATAAAATATAGTATTTTATTTATATATAACATT
1 CCGATGGAAAAGACATGTTACTCAGAAACATAAAATATAGTATTTTATTTATATATAACATT
* * *
1135483 CTGATGGAAAAGATATGTTAGTCAGAAACATAAAATATAGTATTTTATTTATATATAACATT
1 CCGATGGAAAAGACATGTTACTCAGAAACATAAAATATAGTATTTTATTTATATATAACATT
1135545 CCGATG
1 CCGATG
1135551 AATTTTAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (62 bp):
CCGATGGAAAAGACATGTTACTCAGAAACATAAAATATAGTATTTTATTTATATATAACATT
Found at i:1135765 original size:106 final size:106
Alignment explanation
Indices: 1135579--1135784 Score: 394
Period size: 106 Copynumber: 1.9 Consensus size: 106
1135569 TAATATATTG
1135579 ATGTATTTCCGTCAATAAACTTCTGACGAGTCACTTTATTCCCTCGAAAATATTGGTTTCAACCA
1 ATGTATTTCCGTCAATAAACTTCTGACGAGTCACTTTATTCCCTCGAAAATATTGGTTTCAACCA
1135644 GCATTTTATCAATCACTTTCTTCCCTCAGAAATTCATACTA
66 GCATTTTATCAATCACTTTCTTCCCTCAGAAATTCATACTA
1135685 ATGTATTTCCGTCAATAAACTTCTGACGAGTCACTTTATTCCCTCGAAAATATTGGTTTCAACCA
1 ATGTATTTCCGTCAATAAACTTCTGACGAGTCACTTTATTCCCTCGAAAATATTGGTTTCAACCA
**
1135750 GCATTTTATTGATCACTTTCTTCCCTCAGAAATTC
66 GCATTTTATCAATCACTTTCTTCCCTCAGAAATTC
1135785 TGTTAATAAA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 98 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.37
Consensus pattern (106 bp):
ATGTATTTCCGTCAATAAACTTCTGACGAGTCACTTTATTCCCTCGAAAATATTGGTTTCAACCA
GCATTTTATCAATCACTTTCTTCCCTCAGAAATTCATACTA
Found at i:1136919 original size:2 final size:2
Alignment explanation
Indices: 1136912--1136947 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1136902 TAAAATTTAA
1136912 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1136948 CATGTGTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1139074 original size:32 final size:32
Alignment explanation
Indices: 1139033--1139095 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
1139023 AATTTAACAG
1139033 AATGATACGTTTGATTATTTGAATAAGTTCAT
1 AATGATACGTTTGATTATTTGAATAAGTTCAT
1139065 AATGATACGTTTGATTATTTGAATAAGTTCA
1 AATGATACGTTTGATTATTTGAATAAGTTCA
1139096 AAAGAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (32 bp):
AATGATACGTTTGATTATTTGAATAAGTTCAT
Found at i:1139963 original size:17 final size:17
Alignment explanation
Indices: 1139941--1139984 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
1139931 ACTTGATAAA
1139941 AGCTCGACTCGAACTCG
1 AGCTCGACTCGAACTCG
1139958 AGCTCGACTCGAACTCG
1 AGCTCGACTCGAACTCG
1139975 AGCTCGACTC
1 AGCTCGACTC
1139985 AAGACCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.23, C:0.36, G:0.23, T:0.18
Consensus pattern (17 bp):
AGCTCGACTCGAACTCG
Found at i:1139967 original size:11 final size:11
Alignment explanation
Indices: 1139941--1139984 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
1139931 ACTTGATAAA
1139941 AGCTCGACTCG
1 AGCTCGACTCG
*
1139952 AACTCGAGCTCG
1 AGCTCGA-CTCG
1139964 A-CTCGAACTCG
1 AGCTCG-ACTCG
1139975 AGCTCGACTC
1 AGCTCGACTC
1139985 AAGACCTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.23, C:0.36, G:0.23, T:0.18
Consensus pattern (11 bp):
AGCTCGACTCG
Found at i:1140445 original size:32 final size:32
Alignment explanation
Indices: 1140404--1140512 Score: 115
Period size: 31 Copynumber: 3.6 Consensus size: 32
1140394 TTTCGGTGAA
*
1140404 CTTAACGAGCAATGAGTCGAGCAACAAATTTT
1 CTTAACGAGCAACGAGTCGAGCAACAAATTTT
*
1140436 CTTAACGAGC-ACGAGTTGAGC-A-AAA--TT
1 CTTAACGAGCAACGAGTCGAGCAACAAATTTT
* *
1140463 -TTAACAAGCAACGAGTCAAGCAACAAATTTT
1 CTTAACGAGCAACGAGTCGAGCAACAAATTTT
* *
1140494 CTTAACAAAC-ACGAGTCGA
1 CTTAACGAGCAACGAGTCGA
1140513 ACAAAATTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
26 8 0.12
27 11 0.17
28 1 0.02
29 6 0.09
30 1 0.02
31 19 0.30
32 18 0.28
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (32 bp):
CTTAACGAGCAACGAGTCGAGCAACAAATTTT
Found at i:1140490 original size:29 final size:29
Alignment explanation
Indices: 1140405--1140493 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 29
1140395 TTCGGTGAAC
*
1140405 TTAACGAGCAATGAGTCGAGCAACAAATTTT
1 TTAACGAGCAACGAGTCGAGCAACAAA--TT
*
1140436 CTTAACGAGC-ACGAGTTGAGC-A-AAATT
1 -TTAACGAGCAACGAGTCGAGCAACAAATT
* *
1140463 TTAACAAGCAACGAGTCAAGCAACAAATT
1 TTAACGAGCAACGAGTCGAGCAACAAATT
1140492 TT
1 TT
1140494 CTTAACAAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 8 0.16
27 11 0.22
28 1 0.02
29 10 0.20
30 1 0.02
31 9 0.18
32 9 0.18
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (29 bp):
TTAACGAGCAACGAGTCGAGCAACAAATT
Found at i:1140495 original size:58 final size:58
Alignment explanation
Indices: 1140405--1140524 Score: 177
Period size: 58 Copynumber: 2.1 Consensus size: 58
1140395 TTCGGTGAAC
* * * * * * *
1140405 TTAACGAGCAATGAGTCGAGCAACAAATTTTCTTAACGAGCACGAGTTGAGCAAAATT
1 TTAACAAGCAACGAGTCAAGCAACAAATTTTCTTAACAAACACGAGTCGAACAAAATT
1140463 TTAACAAGCAACGAGTCAAGCAACAAATTTTCTTAACAAACACGAGTCGAACAAAATT
1 TTAACAAGCAACGAGTCAAGCAACAAATTTTCTTAACAAACACGAGTCGAACAAAATT
1140521 TTAA
1 TTAA
1140525 TGAGTTTAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.23
Consensus pattern (58 bp):
TTAACAAGCAACGAGTCAAGCAACAAATTTTCTTAACAAACACGAGTCGAACAAAATT
Found at i:1140519 original size:29 final size:29
Alignment explanation
Indices: 1140429--1140522 Score: 88
Period size: 29 Copynumber: 3.2 Consensus size: 29
1140419 GTCGAGCAAC
* * *
1140429 AAATTTTCTTAACGAGCACGAGTTGAGCA
1 AAATTTTCTTAACAAGCACGAGTCGAACA
1140458 AAA--TT-TTAACAAGCAACGAGTC-AAGCAA
1 AAATTTTCTTAACAAGC-ACGAGTCGAA-C-A
*
1140486 CAAATTTTCTTAACAAACACGAGTCGAACA
1 -AAATTTTCTTAACAAGCACGAGTCGAACA
1140516 AAATTTT
1 AAATTTT
1140523 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
26 9 0.17
27 9 0.17
28 1 0.02
29 13 0.25
30 1 0.02
31 10 0.19
32 10 0.19
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.26
Consensus pattern (29 bp):
AAATTTTCTTAACAAGCACGAGTCGAACA
Found at i:1155209 original size:23 final size:23
Alignment explanation
Indices: 1155156--1155212 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
1155146 CTCATATAAA
*
1155156 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGTAGTGCCACATAGAAT
* *
1155179 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGTAGTGCCACATAGAAT
1155202 TGCACCGTAGT
1 TGCACCGTAGT
1155213 TCCATATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCACCGTAGTGCCACATAGAAT
Found at i:1155403 original size:103 final size:103
Alignment explanation
Indices: 1155239--1155449 Score: 386
Period size: 103 Copynumber: 2.0 Consensus size: 103
1155229 CATAAGGACT
* *
1155239 ACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCAGACTTCA
1 ACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTCA
1155304 CACATGTTCCAAAGAATACATATATGTCCCGAACGACC
66 CACATGTTCCAAAGAATACATATATGTCCCGAACGACC
*
1155342 ACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACTTCA
1 ACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTCA
*
1155407 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
66 CACATGTTCCAAAGAATACATATATGTCCCGAACGACC
1155445 ACATA
1 ACATA
1155450 GACCCTCGAC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (103 bp):
ACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTCA
CACATGTTCCAAAGAATACATATATGTCCCGAACGACC
Found at i:1157154 original size:21 final size:21
Alignment explanation
Indices: 1157130--1157174 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1157120 TTTTGTTCGT
* *
1157130 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
1157151 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
1157172 TTG
1 TTG
1157175 CCCATAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:1160399 original size:23 final size:23
Alignment explanation
Indices: 1160373--1160435 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
1160363 CGCCACAGCT
*
1160373 CATATAAATGCACCGA-AGTGCCA
1 CATAGAAATGCACC-ATAGTGCCA
* *
1160396 CATAGAATTGCACCATAGTGCCG
1 CATAGAAATGCACCATAGTGCCA
* *
1160419 CGTAGAATTGCACCATA
1 CATAGAAATGCACCATA
1160436 TTTCCATATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 1 0.03
23 34 0.97
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (23 bp):
CATAGAAATGCACCATAGTGCCA
Found at i:1160628 original size:103 final size:103
Alignment explanation
Indices: 1160457--1160674 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
1160447 TAATGTCCAT
* *
1160457 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
1160522 GACTTCACTCATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
1160560 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1160625 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
1160663 AAGGACCACATA
1 AAGGACCACATA
1160675 GACCATCGAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:1161880 original size:21 final size:21
Alignment explanation
Indices: 1161856--1161900 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1161846 TATTGTTCAT
* *
1161856 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
1161877 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
1161898 TTG
1 TTG
1161901 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:1163357 original size:23 final size:23
Alignment explanation
Indices: 1163288--1163360 Score: 105
Period size: 23 Copynumber: 3.3 Consensus size: 23
1163278 CACCACAGCT
*
1163288 CATATA-AA-TGCACCGAAGTGC
1 CATATAGAATTGCACCGTAGTGC
*
1163309 CACATAGAATTGCACCGTAGTGC
1 CATATAGAATTGCACCGTAGTGC
*
1163332 CATGTAGAATTGCACCGTAGTGC
1 CATATAGAATTGCACCGTAGTGC
1163355 CATATA
1 CATATA
1163361 ATAATGTCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
21 5 0.11
22 2 0.04
23 38 0.84
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (23 bp):
CATATAGAATTGCACCGTAGTGC
Found at i:1163543 original size:103 final size:103
Alignment explanation
Indices: 1163379--1163589 Score: 397
Period size: 103 Copynumber: 2.0 Consensus size: 103
1163369 CATAAAGACT
1163379 ACATATCATTCCTTAAGAATCATATACATATACAAGGGATCAAGTATGTGTCTCACCAGACTTCA
1 ACATATCATTCCTTAAGAATCATATACATATACAAGGGATCAAGTATGTGTCTCACCAGACTTCA
1163444 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
66 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
*
1163482 ACATATCATTCCTTAAGAATCATATACATATGCCAA-GGATCAAGTATGTGTCTCACCAGACTTC
1 ACATATCATTCCTTAAGAATCATATACATAT-ACAAGGGATCAAGTATGTGTCTCACCAGACTTC
1163546 ACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
65 ACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
1163585 ACATA
1 ACATA
1163590 GACCCTCGAC
Statistics
Matches: 106, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
103 103 0.97
104 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (103 bp):
ACATATCATTCCTTAAGAATCATATACATATACAAGGGATCAAGTATGTGTCTCACCAGACTTCA
CACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
Found at i:1165287 original size:21 final size:21
Alignment explanation
Indices: 1165257--1165301 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
1165247 TTTTGTTCGT
*
1165257 TTGAAGGGGTATCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
1165278 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
1165299 TTG
1 TTG
1165302 CCCAGAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:1166589 original size:25 final size:25
Alignment explanation
Indices: 1166552--1166603 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
1166542 TTTTATGGCC
1166552 TGTAAACAGATTTTAGATTGTTCCT
1 TGTAAACAGATTTTAGATTGTTCCT
*
1166577 TGTAAACATATTTTAGATTGTTCCT
1 TGTAAACAGATTTTAGATTGTTCCT
1166602 TG
1 TG
1166604 ATTGCGAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (25 bp):
TGTAAACAGATTTTAGATTGTTCCT
Found at i:1170870 original size:27 final size:27
Alignment explanation
Indices: 1170839--1170947 Score: 202
Period size: 27 Copynumber: 4.1 Consensus size: 27
1170829 AAACAAATTA
1170839 TTAATTATAATCATTAGATTAATAAAT
1 TTAATTATAATCATTAGATTAATAAAT
*
1170866 TTAA-TGTAATCATTAGATTAATAAAT
1 TTAATTATAATCATTAGATTAATAAAT
1170892 TTAATTATAATCATTAGATTAATAAAT
1 TTAATTATAATCATTAGATTAATAAAT
1170919 TTAATTATAATCATTAGATTAATAAAT
1 TTAATTATAATCATTAGATTAATAAAT
1170946 TT
1 TT
1170948 GCTTTGTATA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 25 0.32
27 54 0.68
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.45
Consensus pattern (27 bp):
TTAATTATAATCATTAGATTAATAAAT
Found at i:1170904 original size:53 final size:54
Alignment explanation
Indices: 1170839--1170947 Score: 202
Period size: 53 Copynumber: 2.0 Consensus size: 54
1170829 AAACAAATTA
*
1170839 TTAATTATAATCATTAGATTAATAAATTTAA-TGTAATCATTAGATTAATAAAT
1 TTAATTATAATCATTAGATTAATAAATTTAATTATAATCATTAGATTAATAAAT
1170892 TTAATTATAATCATTAGATTAATAAATTTAATTATAATCATTAGATTAATAAAT
1 TTAATTATAATCATTAGATTAATAAATTTAATTATAATCATTAGATTAATAAAT
1170946 TT
1 TT
1170948 GCTTTGTATA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 31 0.57
54 23 0.43
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.45
Consensus pattern (54 bp):
TTAATTATAATCATTAGATTAATAAATTTAATTATAATCATTAGATTAATAAAT
Found at i:1171043 original size:16 final size:17
Alignment explanation
Indices: 1171001--1171052 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 17
1170991 ATAACCATTA
*
1171001 TATTAATTTTATTAAAT
1 TATTAATTTTATTAGAT
* *
1171018 AATTCA-TTTATT-GAT
1 TATTAATTTTATTAGAT
1171033 TATTAATTTTATTAGAT
1 TATTAATTTTATTAGAT
1171050 TAT
1 TAT
1171053 ATAAAATGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 6 0.21
16 12 0.43
17 10 0.36
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (17 bp):
TATTAATTTTATTAGAT
Found at i:1174396 original size:3 final size:3
Alignment explanation
Indices: 1174388--1174432 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
1174378 TTTGGGTTTG
1174388 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1174433 AAGATCAAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1177214 original size:19 final size:18
Alignment explanation
Indices: 1177186--1177225 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
1177176 AAAACCAGAA
*
1177186 CCCCAGGGGGTATCGATT
1 CCCCAGGGGGAATCGATT
*
1177204 CCCCTAGGGGGAATCGGTT
1 CCCC-AGGGGGAATCGATT
1177223 CCC
1 CCC
1177226 ATTCAAAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.20
Consensus pattern (18 bp):
CCCCAGGGGGAATCGATT
Found at i:1182261 original size:25 final size:25
Alignment explanation
Indices: 1182233--1182289 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
1182223 AACCTTCAAA
*
1182233 TGAGTTAGGCTCTGATGCTAATTGT
1 TGAGTTAGGCTCTGATGCCAATTGT
1182258 TGAGTTAGGCTCTGATGCCAATTGT
1 TGAGTTAGGCTCTGATGCCAATTGT
1182283 TGAGTTA
1 TGAGTTA
1182290 ATCGATTGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.21, C:0.12, G:0.28, T:0.39
Consensus pattern (25 bp):
TGAGTTAGGCTCTGATGCCAATTGT
Found at i:1191418 original size:18 final size:20
Alignment explanation
Indices: 1191381--1191419 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1191371 TTGGAGTGTG
*
1191381 GGGGAATCGGTATCCCCTAA
1 GGGGAATCAGTATCCCCTAA
1191401 GGGGAATCAGT-T-CCCTAA
1 GGGGAATCAGTATCCCCTAA
1191419 G
1 G
1191420 TGTAAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (20 bp):
GGGGAATCAGTATCCCCTAA
Found at i:1191555 original size:23 final size:23
Alignment explanation
Indices: 1191529--1191585 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
1191519 ACCATTCAGG
1191529 GGGGAATCGGTACCCCCTTGGGA
1 GGGGAATCGGTACCCCCTTGGGA
*
1191552 GGGGAATCGGTACTCCCTTGGGA
1 GGGGAATCGGTACCCCCTTGGGA
1191575 GGGGAATCGGT
1 GGGGAATCGGT
1191586 TCCCTCTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.21, G:0.42, T:0.19
Consensus pattern (23 bp):
GGGGAATCGGTACCCCCTTGGGA
Found at i:1193009 original size:64 final size:62
Alignment explanation
Indices: 1192935--1193083 Score: 149
Period size: 62 Copynumber: 2.4 Consensus size: 62
1192925 GAGTATTTCC
* *
1192935 ATTTTAAAATTTAACTATAATTTAAAAAAACTAGAGGAGGAAGGAGAG-AGTATG-GAATGTTTT
1 ATTTTAAAATTTAACTAAAATTT-AAAAAACTAG-GAAGGAAGGAGAGAAG-A-GAGAATGTTTT
1192998 T
62 T
* * * * **
1192999 ATTTTAAAATTTCATTAAAATTTTAAAAACTAGGAAGGGATTAGAGAAGAGAGAATGTTTTT
1 ATTTTAAAATTTAACTAAAATTTAAAAAACTAGGAAGGAAGGAGAGAAGAGAGAATGTTTTT
* **
1193061 ATTTTAAAAGTTCTCTAAAATTT
1 ATTTTAAAATTTAACTAAAATTT
1193084 GTACGAATCA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
61 1 0.01
62 40 0.56
63 11 0.15
64 20 0.28
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.36
Consensus pattern (62 bp):
ATTTTAAAATTTAACTAAAATTTAAAAAACTAGGAAGGAAGGAGAGAAGAGAGAATGTTTTT
Found at i:1193708 original size:21 final size:21
Alignment explanation
Indices: 1193673--1193725 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
1193663 ACATGTATTT
* *
1193673 ATGTATG-TTTTGATGCATGC
1 ATGTATGATATTGATGCATAC
1193693 ATGTATGATATTGATGCATAC
1 ATGTATGATATTGATGCATAC
1193714 ATGTATGTATAT
1 ATGTATG-ATAT
1193726 ACATATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 7 0.24
21 18 0.62
22 4 0.14
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (21 bp):
ATGTATGATATTGATGCATAC
Found at i:1194765 original size:2 final size:2
Alignment explanation
Indices: 1194758--1194822 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
1194748 TGACCTGACC
1194758 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1194800 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
1194823 TCATTGATGT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1196063 original size:23 final size:23
Alignment explanation
Indices: 1196032--1196104 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1196022 ATAGGTAAAA
*
1196032 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
1196055 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
1196078 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
1196101 ATAT
1 ATAT
1196105 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:1196552 original size:23 final size:23
Alignment explanation
Indices: 1196521--1196593 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1196511 ATAGGTAAAA
*
1196521 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
1196544 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
1196567 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
1196590 ATAT
1 ATAT
1196594 TGTAAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:1197029 original size:23 final size:23
Alignment explanation
Indices: 1196998--1197070 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1196988 ATAGGTAAAA
*
1196998 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
1197021 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
1197044 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
1197067 ATAT
1 ATAT
1197071 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:1197507 original size:23 final size:23
Alignment explanation
Indices: 1197476--1197548 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1197466 ATAGGTAAAA
*
1197476 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
1197499 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
1197522 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
1197545 ATAT
1 ATAT
1197549 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:1197538 original size:478 final size:478
Alignment explanation
Indices: 1195608--1197938 Score: 4017
Period size: 478 Copynumber: 4.8 Consensus size: 478
1195598 TTTTTACCTG
* * *
1195608 TTATATTGTAAAGTATTTATCCTTTTTATAAGAGTGTCCATACTTTTTTT-ATTGTGGAAAACAT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATA-TTTTTTTCACTGTTGAAAACAT
1195672 TAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGTTATTAATTTAGTAATTATAGGCGTCTAATGA
65 TAATTTAAGGTTATC-TTT---TGAG-----A--TATTAATTTAGTAATTATAGGCGTCTAATGA
1195737 TTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAAACAATAAACATATATATTACAT
119 TTTATTTTTTACGTTACGGTATATATTATTATTAAATT-AAAAACAATAAACATATATATTACAT
*
1195802 ATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTACATAATATTTTATAAAATATCA
183 ATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCA
1195867 AAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
248 AAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
1195932 AACACTATTAAAAAAATCTGAAACATAAATTACATAACTTTAAAAAAAGTATCGAT-TCTTTTTA
313 AACACTATTAAAAAAAT-TGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCT-TTTTTA
1195996 TAAAAAGTATGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAA
376 TAAAAAGTATGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAA
1196061 TGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
441 TGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* * *
1196099 TTATATTGTAAAGTATATATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
*
1196164 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAAATATTAATTTAGTAATTATAGACGTCTAATGAT
66 AATTTAAGGTTATC-TTT---TGAG-------ATATTAATTTAGTAATTATAGGCGTCTAATGAT
*
1196229 TTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
120 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
1196294 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTT-TAAAATATCAAA
185 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
*
1196358 ATAAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
250 A-CAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
* *
1196423 ACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA
314 ACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAA
* * *
1196488 AAAGTAAGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
379 AAAGTATGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
1196553 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
444 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* * *
1196588 TTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG-TGAAAACATT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
* *
1196652 AATTTAAGGTTA-GTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
66 AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
1196716 ATTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
131 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
1196781 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
196 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
1196846 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTATGTGGAAAACATGAAACACTATTAAAA
261 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
1196911 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAA
325 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAA
1196976 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
390 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
1197041 TTTATATAATGTAATAGGTAGTGC
455 TTTATATAATGTAATAGGTAGTGC
* *
1197065 TTATATTGTAAAGTATTTATCATTTTTATAAAAGTATCCATATTTTTTTCACTGTTGAAAACATT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
* *
1197130 AATTTAAAGTTATCTTTTGAGATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTAC
66 AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
1197195 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
131 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
1197260 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
196 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
1197325 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTATGTGGAAAACATGAAACACTATTAAAA
261 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
1197390 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAAA
326 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAAA
1197455 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
391 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
1197520 TTATATAATGTAATAGGTAGTGC
456 TTATATAATGTAATAGGTAGTGC
* *
1197543 TTATATTGTAAAGTATTTATCATTTTTATAAAAGTATCCATATTTTTTTCACTGTTGAAAACATT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
*
1197608 AATTTAAAGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
66 AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
1197673 GTTACGGTATATAGTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
131 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
1197738 TTTGGTTAATATTGTTAAACTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
196 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* *
1197803 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATT-AAA
261 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
1197867 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
326 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAAA
1197932 CTTTCAA
391 CTTTCAA
1197939 CATATTATAA
Statistics
Matches: 1779, Mismatches: 52, Indels: 32
0.95 0.03 0.02
Matches are distributed among these distances:
476 216 0.12
477 286 0.16
478 491 0.28
479 238 0.13
483 3 0.00
486 3 0.00
488 21 0.01
489 208 0.12
490 163 0.09
491 146 0.08
493 4 0.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (478 bp):
TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAAA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGC
Found at i:1197870 original size:955 final size:959
Alignment explanation
Indices: 1195608--1197938 Score: 4059
Period size: 955 Copynumber: 2.4 Consensus size: 959
1195598 TTTTTACCTG
* * *
1195608 TTATATTGTAAAGTATTTATCCTTTTTATAAGAGTGTCCATACTTTTTTT-ATTGTGGAAAACAT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATA-TTTTTTTCACTGTTGAAAACAT
1195672 TAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGTTATTAATTTAGTAATTATAGGCGTCTAATGA
65 TAATTTAAGGTTATC-TTT---TGAG-----A--TATTAATTTAGTAATTATAGGCGTCTAATGA
1195737 TTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAAACAATAAACATATATATTACAT
119 TTTATTTTTTACGTTACGGTATATATTATTATTAAATT-AAAAACAATAAACATATATATTACAT
*
1195802 ATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTACATAATATTTTATAAAATATCA
183 ATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCA
1195867 AAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
248 AAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGA
1195932 AACACTATTAAAAAAATCTGAAACATAAATTACATAACTTTAAAAAAAGTATCGAT-TCTTTTTA
313 AACACTATTAAAAAAAT-TGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCT-TTTTTA
1195996 TAAAAAGTATGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAA
376 TAAAAAGTATGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAA
*
1196061 TGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATATATCCTTTTT
441 TGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATATATCATTTTT
* *
1196126 ATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTT
506 ATAAAAGTATCCATACTTTTTTCACTGTGGAAAACATTAATTTAAAGTTATCTTTT--GTGAG--
1196191 TTAAAATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTACGTTACGATATATATTA
567 -T---ATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTACGTTACGATATATATTA
1196256 TTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTT
628 TTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTT
1196321 AAATTTAAATTCTAAATAATATTTTTAAAATATCAAAATAAATCAAATAATTTTTTGTGTAAATG
693 AAATTTAAATTCTAAATAATATTTTTAAAATATCAAAATAAATCAAATAATTTTTTGTGTAAATG
1196386 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAAT
758 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAAT
* *
1196451 TACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTAAGGACACTTTCAATATAATAGG
823 TACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTAAGAAAACTTTCAATATAATAGG
1196516 TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAG
888 TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAG
1196581 GTAGTGC
953 GTAGTGC
* * *
1196588 TTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG-TGAAAACATT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
* *
1196652 AATTTAAGGTTA-GTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
66 AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
1196716 ATTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
131 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
1196781 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
196 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
1196846 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTATGTGGAAAACATGAAACACTATTAAAA
261 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
1196911 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAA
325 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAA
1196976 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
390 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
*
1197041 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATTTATCATTTTTATAAAAGTATCCAT
455 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATATATCATTTTTATAAAAGTATCCAT
* *
1197106 ATTTTTTTCACTGTTGAAAACATTAATTTAAAGTTATC-TTT-TGAG-ATATTAATTTAGTAATT
520 ACTTTTTTCACTGTGGAAAACATTAATTTAAAGTTATCTTTTGTGAGTATATTAATTTAGTAATT
1197168 ATAGACGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAA
585 ATAGACGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAA
1197233 CATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATAT
650 CATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATAT
*
1197298 TTTATAAAATATCAAAA-CAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGT
715 TTT-TAAAATATCAAAATAAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGT
* *
1197362 ATGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTA
779 AGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTA
* *
1197427 TCGATCTTTTTTATAAAAAGTATGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGT
844 TCGATCCTTTTTATAAAAAGTAAGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGT
1197492 AGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
909 AGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* *
1197543 TTATATTGTAAAGTATTTATCATTTTTATAAAAGTATCCATATTTTTTTCACTGTTGAAAACATT
1 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
*
1197608 AATTTAAAGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
66 AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
1197673 GTTACGGTATATAGTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
131 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
1197738 TTTGGTTAATATTGTTAAACTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
196 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* *
1197803 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATT-AAA
261 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
1197867 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
326 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAAA
1197932 CTTTCAA
391 CTTTCAA
1197939 CATATTATAA
Statistics
Matches: 1303, Mismatches: 42, Indels: 37
0.94 0.03 0.03
Matches are distributed among these distances:
955 492 0.38
956 34 0.03
957 234 0.18
962 4 0.00
965 3 0.00
966 383 0.29
967 77 0.06
969 1 0.00
974 3 0.00
977 3 0.00
979 27 0.02
980 42 0.03
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (959 bp):
TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTTGAAAACATT
AATTTAAGGTTATCTTTTGAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAAA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATATATCATTTTTATAAAAGTATCCATA
CTTTTTTCACTGTGGAAAACATTAATTTAAAGTTATCTTTTGTGAGTATATTAATTTAGTAATTA
TAGACGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAAC
ATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATT
TTTAAAATATCAAAATAAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAG
GTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAAAAAAGTATC
GATCCTTTTTATAAAAAGTAAGAAAACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG
CGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
Found at i:1198079 original size:22 final size:23
Alignment explanation
Indices: 1198044--1198086 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
1198034 TATTGTACTT
**
1198044 TATAATATTTCCGAT-TAAATAA
1 TATAATATAACCGATCTAAATAA
1198066 TATAATATAACCGATCTAAAT
1 TATAATATAACCGATCTAAAT
1198087 TTTAATCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.37
Consensus pattern (23 bp):
TATAATATAACCGATCTAAATAA
Found at i:1198687 original size:18 final size:18
Alignment explanation
Indices: 1198664--1198705 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
1198654 AACTTGATCA
1198664 AATTGCTCTTTGCCCGGC
1 AATTGCTCTTTGCCCGGC
1198682 AATTGCTCTTTGCCCGGC
1 AATTGCTCTTTGCCCGGC
1198700 AATTGC
1 AATTGC
1198706 GCTTCCACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.31, G:0.21, T:0.33
Consensus pattern (18 bp):
AATTGCTCTTTGCCCGGC
Found at i:1202722 original size:20 final size:21
Alignment explanation
Indices: 1202672--1202722 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
1202662 TTATATTTTG
*
1202672 TTCTATATGTTTCTATATATAT
1 TTCT-TATTTTTCTATATATAT
1202694 TTCTTATTTTTCTAT-TATTAT
1 TTCTTATTTTTCTATATA-TAT
1202715 TT-TTATTT
1 TTCTTATTT
1202723 AATACTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 8 0.30
21 15 0.56
22 4 0.15
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.69
Consensus pattern (21 bp):
TTCTTATTTTTCTATATATAT
Found at i:1206973 original size:183 final size:183
Alignment explanation
Indices: 1206665--1207014 Score: 637
Period size: 183 Copynumber: 1.9 Consensus size: 183
1206655 ATTGAATCCG
*
1206665 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCATGGCTTTATGA
** *
1206730 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTACATTCAAACCATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
1206795 TTGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTTCAGTGATTTGTCCCTC
1206848 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCATGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCATGGCTTTATGA
*
1206913 ATAGATTACATTCAAACCATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTACATTCAAACCATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
* *
1206978 TTGTCAGGCCAAAGACTTTGTGATGAGATGAAGCCTT
131 TTGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTT
1207015 TAGTTAAACC
Statistics
Matches: 160, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 160 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (183 bp):
TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCATGGCTTTATGA
ATAGATTACATTCAAACCATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
TTGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTTCAGTGATTTGTCCCTC
Found at i:1208368 original size:37 final size:37
Alignment explanation
Indices: 1208301--1208387 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
1208291 ATTGAAAACA
** * *
1208301 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1208337 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
1208374 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
1208388 TAAACATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.27
37 33 0.73
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:1208390 original size:102 final size:102
Alignment explanation
Indices: 1208212--1208516 Score: 504
Period size: 102 Copynumber: 3.0 Consensus size: 102
1208202 TTAAAACAAG
* * * *
1208212 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAAGTTTTGTCTCACTTGAGACAGTTTCT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACA-AAA-TTTTGTCTCCCTTGAGACAGTTTCT
*
1208277 CTTTAAACATAAACATTGAAAACATTTCCCTTGAAATGA
64 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGA
1208316 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
1208381 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGA
66 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGA
* *
1208418 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC-AAATTTTGTCTCCTTTGAGACAGTTTCTAT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
*
1208482 TGAAACATAAACTTTGAAAACAGTTTCCCTTGAAA
66 TGAAACATAAACATTGAAAACA-TTTCCCTTGAAA
1208517 CAAAATCTTT
Statistics
Matches: 192, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
101 49 0.26
102 108 0.56
103 3 0.02
104 32 0.17
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (102 bp):
ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
TGAAACATAAACATTGAAAACATTTCCCTTGAAATGA
Found at i:1208450 original size:36 final size:36
Alignment explanation
Indices: 1208403--1208488 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
1208393 ATTGAAAACA
** *
1208403 TTTCCCTTGAAATGAATTTTGTCT-CTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTTGTCTCCT-TTGAGACAG
1208439 TTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACAG
**
1208475 TTTCTATTGAAACA
1 TTTCCCTTGAAACA
1208489 TAAACTTTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
36 42 0.95
37 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACAG
Found at i:1208506 original size:30 final size:30
Alignment explanation
Indices: 1208471--1208529 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
1208461 CTCCTTTGAG
*
1208471 ACAGTTTCTATTGAAACATAAA-CTTTGAAA
1 ACAGTTTCCATTGAAACA-AAATCTTTGAAA
*
1208501 ACAGTTTCCCTTGAAACAAAATCTTTGAA
1 ACAGTTTCCATTGAAACAAAATCTTTGAA
1208530 TATGTTTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (30 bp):
ACAGTTTCCATTGAAACAAAATCTTTGAAA
Found at i:1208627 original size:38 final size:36
Alignment explanation
Indices: 1208543--1208657 Score: 158
Period size: 36 Copynumber: 3.1 Consensus size: 36
1208533 GTTTTACATT
*
1208543 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * * *
1208579 AAACATATTTTGTCTCTCTTAAGACATGTTTTTCTTA
1 AAACAAATTTTGTCTCTCTTGAGACA-GTTTCTCTTG
*
1208616 AAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
1208653 AAACA
1 AAACA
1208658 TCAATCCTTG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
36 24 0.36
37 24 0.36
38 19 0.28
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:1208763 original size:34 final size:34
Alignment explanation
Indices: 1208698--1208813 Score: 166
Period size: 34 Copynumber: 3.4 Consensus size: 34
1208688 CCTTGATACA
1208698 GTTTCTCTTGAAACACAAAAAGAAACCTTTGAAATT
1 GTTTCTCTTGAAACAC-AAAA-AAACCTTTGAAATT
*
1208734 GTTTCTCTTGAAACACAAAAAAACCTTTGAAAAT
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
*
1208768 GTTTCTCTTGAAACAC---AAAACCTTTGAGATT
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
*
1208799 GTTTCCCTTGAAACA
1 GTTTCTCTTGAAACA
1208814 AATTTCGTCT
Statistics
Matches: 76, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
31 27 0.36
34 29 0.38
35 4 0.05
36 16 0.21
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (34 bp):
GTTTCTCTTGAAACACAAAAAAACCTTTGAAATT
Found at i:1208860 original size:67 final size:67
Alignment explanation
Indices: 1208768--1208953 Score: 255
Period size: 67 Copynumber: 2.7 Consensus size: 67
1208758 CTTTGAAAAT
*
1208768 GTTTCTCTTGAAACACAAAACCTTTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCCCTTGAGA
1 GTTTCTCTTGAAACACAAAATCTTTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCCCTTGAGA
1208833 CA
66 CA
* * * * *
1208835 GTTTCTCTTGAAACACAAAATCTTTGAGTTTATTTCCCTTAAAACAAATTTTGTCTCCCTTGAGG
1 GTTTCTCTTGAAACACAAAATCTTTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCCCTTGAGA
*
1208900 CC
66 CA
* * * *
1208902 GTTTCTCGTGAAACAACATATATCTTTAAGATTGTTTCCCTTGAAACGAATT
1 GTTTCTCTTGAAAC-ACA-AAATCTTTGAGATTGTTTCCCTTGAAACAAATT
1208954 CTGTCTTTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
67 73 0.71
68 3 0.03
69 27 0.26
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (67 bp):
GTTTCTCTTGAAACACAAAATCTTTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCCCTTGAGA
CA
Found at i:1209470 original size:106 final size:106
Alignment explanation
Indices: 1209272--1209503 Score: 331
Period size: 106 Copynumber: 2.2 Consensus size: 106
1209262 GGTTTTAGCT
* *
1209272 AGAGCCAATTTCAACTTCACAGCGAATGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
1 AGAGCCAATTTCAACTTCACAGCGAAGGACATTGGACTCAAGACAACACAAGTTCAACTTCACAA
** *
1209337 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACGGCTGACTGTCAACAAACAATTTCCCAATTCC
* ** * *
1209378 GGAGCCAATTTCAACTTCACATTGAAGGGCATTGGACTCGAGACAACACAAGTTCAACTTCACAA
1 AGAGCCAATTTCAACTTCACAGCGAAGGACATTGGACTCAAGACAACACAAGTTCAACTTCACAA
*
1209443 CGAAGGG-CGGCTGACTGTCAACAAAACAATTTCCCAGTTCC
66 CGAAGGGACGGCTGACTGTCAAC-AAACAATTTCCCAATTCC
* *
1209484 AGAACCAACTTCAACTTCAC
1 AGAGCCAATTTCAACTTCAC
1209504 GACAGAAGAT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
105 13 0.12
106 98 0.88
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (106 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGACATTGGACTCAAGACAACACAAGTTCAACTTCACAA
CGAAGGGACGGCTGACTGTCAACAAACAATTTCCCAATTCC
Found at i:1210794 original size:2 final size:2
Alignment explanation
Indices: 1210787--1210813 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1210777 TTAATATTAG
1210787 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1210814 TTAAGTATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1211026 original size:19 final size:20
Alignment explanation
Indices: 1210986--1211026 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1210976 GTTCTATATG
1210986 TTTCTATATATATTTCTTAT
1 TTTCTATATATATTTCTTAT
1211006 TTTCTAT-TATTATTT-TTAT
1 TTTCTATATA-TATTTCTTAT
1211025 TT
1 TT
1211027 AATACTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTCTATATATATTTCTTAT
Found at i:1213110 original size:98 final size:98
Alignment explanation
Indices: 1212940--1213234 Score: 572
Period size: 98 Copynumber: 3.0 Consensus size: 98
1212930 AAACTTAATT
*
1212940 ATTTTTAAGAAAATAACTCCATTAAAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTT
1 ATTTTTAAGAAAATAACTCTATT-AAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTT
1213005 GTCAAACTCATTAACGTCATCACATTAACAAATA
65 GTCAAACTCATTAACGTCATCACATTAACAAATA
1213039 ATTTTTAAGAAAATAACTCTATTAAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTTG
1 ATTTTTAAGAAAATAACTCTATTAAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTTG
1213104 TCAAACTCATTAACGTCATCACATTAACAAATA
66 TCAAACTCATTAACGTCATCACATTAACAAATA
1213137 ATTTTTAAGAAAATAACTCTATTAAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTTG
1 ATTTTTAAGAAAATAACTCTATTAAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTTG
1213202 TCAAACTCATTAACGTCATCACATTAACAAATA
66 TCAAACTCATTAACGTCATCACATTAACAAATA
1213235 GGCTTAAATG
Statistics
Matches: 195, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
98 173 0.89
99 22 0.11
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (98 bp):
ATTTTTAAGAAAATAACTCTATTAAAAAATTATTTGCAATAATCACAATAAAATTAAATAATTTG
TCAAACTCATTAACGTCATCACATTAACAAATA
Found at i:1214808 original size:12 final size:12
Alignment explanation
Indices: 1214791--1214815 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1214781 GAAGGTCTAT
1214791 AAAATATTAGTC
1 AAAATATTAGTC
1214803 AAAATATTAGTC
1 AAAATATTAGTC
1214815 A
1 A
1214816 TTAGTTGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAAATATTAGTC
Found at i:1215255 original size:28 final size:29
Alignment explanation
Indices: 1215197--1215255 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 29
1215187 TAAATATTTC
* * * *
1215197 AACACGTATTTAACAATAATTTTATATTT
1 AACACATATTTAACAATAATATTAAAATT
*
1215226 AACACATA-TTAATAATAATATTAAAATT
1 AACACATATTTAACAATAATATTAAAATT
1215254 AA
1 AA
1215256 GAAAACTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (29 bp):
AACACATATTTAACAATAATATTAAAATT
Found at i:1224421 original size:15 final size:15
Alignment explanation
Indices: 1224369--1224422 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
1224359 AAAGATAAAT
*
1224369 TATACTTTTACTCAA
1 TATACTTTTACTCAC
*
1224384 TAAAC-TTTACTCTATC
1 TATACTTTTACTC-A-C
1224400 T-TA-TTTTACTCAC
1 TATACTTTTACTCAC
1224413 TATACTTTTA
1 TATACTTTTA
1224423 ATTTTTTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
13 2 0.06
14 10 0.32
15 18 0.58
16 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (15 bp):
TATACTTTTACTCAC
Found at i:1227035 original size:76 final size:81
Alignment explanation
Indices: 1226945--1227102 Score: 281
Period size: 81 Copynumber: 2.0 Consensus size: 81
1226935 TCCTATATTA
1226945 TCAATTTGGATTAGTTAGTTCATAAAC-AAATATC-AT-A-A-TATTAAATCAATTTTAAAATAG
1 TCAATTTGGATTAGTTAGTTCATAAACAAAATATCAATAATATTATTAAATCAATTTTAAAATAG
1227005 AGATTAATCAATAGTT
66 AGATTAATCAATAGTT
1227021 TCAATTTGGATTAGTTAGTTCATAAACAAAATATCAATAATATTATTAAATCAATTTTAAAATAG
1 TCAATTTGGATTAGTTAGTTCATAAACAAAATATCAATAATATTATTAAATCAATTTTAAAATAG
1227086 AGATTAATCAATAGTT
66 AGATTAATCAATAGTT
1227102 T
1 T
1227103 TTTAATAAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
76 27 0.35
77 7 0.09
78 2 0.03
79 1 0.01
80 1 0.01
81 39 0.51
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.39
Consensus pattern (81 bp):
TCAATTTGGATTAGTTAGTTCATAAACAAAATATCAATAATATTATTAAATCAATTTTAAAATAG
AGATTAATCAATAGTT
Found at i:1229352 original size:31 final size:31
Alignment explanation
Indices: 1229291--1229352 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
1229281 TCAGCTAAAT
* * *
1229291 TATGAGGACTACTTTAATAAAGTTGTCGACA
1 TATGAGGACTACTTTAATAAAATCGCCGACA
*
1229322 TATGAGGA-TCACTTTGATAAAATCGCCGACA
1 TATGAGGACT-ACTTTAATAAAATCGCCGACA
1229353 ACTATTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (31 bp):
TATGAGGACTACTTTAATAAAATCGCCGACA
Found at i:1230628 original size:23 final size:23
Alignment explanation
Indices: 1230569--1230628 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
1230559 CACCGACGAT
* *
1230569 GATGGCTCATCGACAACCTCACC
1 GATGACTCATCGAGAACCTCACC
1230592 GATGACTCATCGAGAACCTCACC
1 GATGACTCATCGAGAACCTCACC
1230615 GATGACTCATCGAG
1 GATGACTCATCGAG
1230629 GATGGCACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.18
Consensus pattern (23 bp):
GATGACTCATCGAGAACCTCACC
Found at i:1233024 original size:21 final size:21
Alignment explanation
Indices: 1232995--1233047 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
1232985 ATTATGACTA
1232995 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
1233016 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
1233037 TCGCAATGCGA
1 TCGCATTGCGA
1233048 ATACGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:1233062 original size:20 final size:20
Alignment explanation
Indices: 1233037--1233123 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
1233027 TTTTCCTAAT
1233037 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** *
1233057 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
1233078 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
1233098 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
1233118 TCGCAA
1 TCGCAA
1233124 CGAGAATCTG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
20 41 0.73
21 15 0.27
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:1233140 original size:20 final size:20
Alignment explanation
Indices: 1233117--1233203 Score: 156
Period size: 20 Copynumber: 4.3 Consensus size: 20
1233107 GAATACGTAA
1233117 ATCGCAACGAGAATCTGACT
1 ATCGCAACGAGAATCTGACT
1233137 ATCGCAACGAGAATCTGACT
1 ATCGCAACGAGAATCTGACT
*
1233157 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGAATCTGACT
*
1233177 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGAATCTGACT
1233197 ATCGCAA
1 ATCGCAA
1233204 TACTGAATTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
20 66 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (20 bp):
ATCGCAACGAGAATCTGACT
Found at i:1234044 original size:24 final size:24
Alignment explanation
Indices: 1234017--1234070 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
1234007 GTATTCGAAA
1234017 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
1234041 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
1234065 TTTGAT
1 TTTGAT
1234071 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:1234246 original size:3 final size:3
Alignment explanation
Indices: 1234238--1234267 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
1234228 ATATAACCCT
1234238 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1234268 ATCCCCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:1236523 original size:20 final size:19
Alignment explanation
Indices: 1236498--1236566 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 19
1236488 CAACGCGAAA
1236498 ATCGCAACGTGAATATGACT
1 ATCGCAACGTGAA-ATGACT
*
1236518 ATCGCAACATGGAAATGACT
1 ATCGCAACGT-GAAATGACT
*
1236538 ATCGCAACGCGGAAATGACT
1 ATCGCAACG-TGAAATGACT
*
1236558 ATCGTAACG
1 ATCGCAACG
1236567 AGAGAATCGC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 40 0.93
21 3 0.07
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (19 bp):
ATCGCAACGTGAAATGACT
Found at i:1236762 original size:14 final size:14
Alignment explanation
Indices: 1236743--1236779 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1236733 CATCAATTAA
1236743 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
1236757 ACAAATCATCTTTT
1 ACAAATCAACATTT
1236771 ACAAATCAA
1 ACAAATCAA
1236780 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:1238266 original size:42 final size:42
Alignment explanation
Indices: 1238159--1238270 Score: 104
Period size: 42 Copynumber: 2.7 Consensus size: 42
1238149 TCTAGAATGT
* * *
1238159 TGGGAG-GGACCTCTTCAACGATGACAGTGGCCTCTTGAAAGG
1 TGGGAGAGG-CCTCTTGAACGATGACAGGGGCCTCTTGAAAGA
* * ** *
1238201 TGGGAGGGGACTCTTGAGGGATGATAGGGGCCTCTTGAACA-A
1 TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTGAA-AGA
1238243 TAGGG-GAGGCCTCTTGAACGATGACAGG
1 T-GGGAGAGGCCTCTTGAACGATGACAGG
1238271 TGAGTCGGGC
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
42 49 0.89
43 6 0.11
ACGTcount: A:0.24, C:0.18, G:0.38, T:0.21
Consensus pattern (42 bp):
TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTGAAAGA
Found at i:1238773 original size:20 final size:20
Alignment explanation
Indices: 1238750--1238858 Score: 137
Period size: 20 Copynumber: 5.5 Consensus size: 20
1238740 GAAACTTAAA
*
1238750 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
1238770 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
1238790 ATCGCAATGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
1238810 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
* ** *
1238830 ATCGCAATGCGAATTTAACT
1 ATCGCAACGCGAAAATGACT
1238850 ATCGCAACG
1 ATCGCAACG
1238859 AGAGAATCGC
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 83 1.00
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:1238928 original size:20 final size:20
Alignment explanation
Indices: 1238903--1238949 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
1238893 GATTCTCTCG
1238903 TTGCGATAATCATTTTCGCA
1 TTGCGATAATCATTTTCGCA
* *
1238923 TTGCGATAGTCATTTTCGCG
1 TTGCGATAATCATTTTCGCA
1238943 TTGCGAT
1 TTGCGAT
1238950 TTTGTTGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
TTGCGATAATCATTTTCGCA
Done.