genome.fa.s8774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008774.1 Hibiscus syriacus cultivar Beakdansim tig00111886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151913

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2923--2959	19	1.9	20	88	5	58	29	2	0	67	1.04
3096--3157	31	2.0	32	83	3	81	24	9	11	54	1.65
33808--33844	14	2.4	16	82	13	51	45	0	0	54	1.00
35128--35152	3	8.3	3	100	0	50	32	0	0	68	0.90
41924--41970	24	2.0	24	95	0	85	34	29	19	17	1.94
41942--41981	18	2.3	18	91	4	64	30	27	22	20	1.98
42202--42263	30	2.1	30	100	0	124	25	25	0	48	1.52
44472--44526	7	7.9	7	79	0	56	21	0	30	47	1.51
44469--44527	14	4.2	14	80	8	75	23	0	32	44	1.54
44473--44536	28	2.3	28	83	5	76	20	1	32	45	1.61
44643--44705	11	5.9	11	73	14	60	39	1	1	57	1.18
48474--48559	21	4.1	21	84	3	102	37	19	41	1	1.59
48482--48574	21	4.4	21	83	4	98	38	19	40	1	1.59
48909--49177	43	6.2	41	73	10	155	29	20	20	29	1.98
69214--69615	201	2.0	201	100	0	804	30	22	14	31	1.94
75749--75780	6	5.2	6	96	3	55	31	3	0	65	1.08
78687--78743	16	3.7	15	77	17	55	77	7	14	1	1.06
80308--80378	36	2.0	36	88	0	106	25	21	14	39	1.90
80714--81129	206	2.0	209	89	3	633	34	25	19	20	1.96
80713--81131	106	4.0	105	84	5	562	33	26	19	21	1.96
82312--84034	861	2.0	861	99	0	3419	31	16	14	38	1.88
91230--91362	71	1.9	72	95	1	241	55	8	9	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95758--96063	149	2.1	148	90	0	477	27	15	21	35	1.93
96039--96099	23	2.7	23	92	2	97	21	27	26	24	1.99
98730--98762	16	1.9	18	88	11	52	60	0	3	36	1.12
99151--99199	21	2.3	21	79	6	64	22	24	18	34	1.96
99189--99235	20	2.3	20	85	3	58	40	17	21	21	1.91
99229--99284	20	2.8	20	91	0	85	26	30	19	23	1.98
99230--99322	40	2.3	40	79	0	96	29	26	16	27	1.97
99230--99312	20	4.2	20	84	0	76	26	28	15	28	1.96
99815--99864	20	2.5	20	83	0	55	16	16	26	42	1.88
99831--99873	20	2.2	20	91	0	68	9	18	20	51	1.74
100010--100064	25	2.2	24	78	15	58	20	9	18	52	1.71
101762--101828	20	3.4	20	81	2	73	38	23	22	14	1.92
101817--101875	14	3.9	14	76	20	64	49	23	16	10	1.77
101801--101890	33	2.7	33	98	0	171	46	22	18	12	1.82
101801--101890	19	5.3	18	70	24	79	46	22	18	12	1.82
101894--101966	20	3.7	19	82	8	83	13	24	24	36	1.92
101956--101994	20	2.0	20	89	0	60	28	12	25	33	1.93
103832--103870	14	2.8	14	84	0	51	35	0	17	46	1.49
104007--104074	19	3.8	19	77	14	83	48	16	20	14	1.81
104093--104179	20	4.3	20	73	11	79	18	20	20	40	1.92
104102--104188	20	4.3	20	77	11	106	16	21	24	37	1.93
104402--104469	20	3.3	20	72	2	64	22	16	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104401--104492	41	2.3	40	88	1	130	22	16	20	40	1.91
104478--104529	20	2.5	21	87	3	70	21	23	17	38	1.93
105302--105355	24	2.2	24	90	0	81	22	16	20	40	1.91
105530--105562	12	2.8	12	86	13	50	72	0	24	3	0.98
106222--106289	19	3.8	19	85	14	101	47	17	22	13	1.82
106296--106383	40	2.4	36	83	12	108	15	20	21	42	1.89
106316--106403	20	4.4	20	78	5	106	17	21	23	37	1.94
106617--106684	20	3.3	20	77	2	73	20	16	22	41	1.90
106616--106707	41	2.3	40	84	1	121	21	16	21	40	1.91
106693--106744	20	2.5	21	87	3	70	21	23	17	38	1.93
106941--106974	12	2.9	12	86	4	52	17	41	5	35	1.74
107528--107581	24	2.2	24	90	0	81	22	16	20	40	1.91
107756--107788	12	2.8	12	95	0	57	69	3	27	0	1.03
110085--110248	19	9.7	19	64	24	98	43	19	21	15	1.88
110084--110249	33	5.0	33	84	7	221	42	19	21	16	1.89
110255--110351	33	2.9	33	86	4	142	14	20	20	44	1.86
110254--110352	19	5.7	19	67	22	74	14	20	20	45	1.85
112166--112350	91	2.0	90	90	6	291	47	18	11	22	1.81
113960--114048	20	4.8	19	71	20	73	46	19	22	12	1.83
113985--114048	33	1.9	34	87	3	94	43	21	23	10	1.84
114049--114096	20	2.5	19	77	12	53	10	16	27	45	1.80
114613--114724	20	5.6	20	84	4	82	21	20	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114631--114724	41	2.3	40	88	1	134	20	21	19	39	1.93
114821--114868	20	2.3	22	75	10	57	35	16	27	20	1.94
117755--117792	19	2.0	19	89	0	58	47	0	5	47	1.24
118108--118178	28	2.5	28	81	4	81	39	19	8	32	1.82
118108--118192	28	3.0	28	79	3	73	40	17	9	32	1.82
121497--121531	16	2.1	17	89	5	54	34	0	2	62	1.10
121615--121676	17	3.9	16	81	12	74	37	1	1	59	1.17
121641--121711	27	3.0	24	78	12	67	36	1	1	60	1.14
121671--121766	37	2.6	34	85	9	111	34	0	3	62	1.11
128696--128929	109	2.1	109	81	5	267	47	16	14	20	1.82
129784--129823	12	3.3	12	85	0	62	15	5	32	47	1.66
129758--129823	24	2.8	24	86	4	80	12	4	36	46	1.61
134567--134593	12	2.2	12	100	0	54	59	7	7	25	1.51
137126--137155	14	2.1	14	93	0	51	30	26	16	26	1.97
137110--137175	32	2.0	33	88	2	98	27	30	18	24	1.98
137278--137317	20	1.9	22	90	10	66	37	40	10	12	1.77
138462--138509	19	2.5	20	86	3	62	52	6	12	29	1.63
139286--139323	20	1.9	20	88	0	58	42	10	7	39	1.69
139647--139686	21	1.9	21	89	0	62	30	10	10	50	1.69
139789--139855	30	2.3	30	81	2	82	37	5	17	38	1.75
139984--140035	18	2.9	18	77	13	63	23	34	17	25	1.96
142019--142048	2	14.5	2	93	6	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147237--147692	228	2.0	227	97	0	858	38	8	27	26	1.84
147718--147757	21	1.9	21	89	0	62	10	25	40	25	1.86

Tables:   1

The End!