Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008775.1 Hibiscus syriacus cultivar Beakdansim tig00111887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 150276
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
File 1 of 2
Found at i:253 original size:52 final size:55
Alignment explanation
Indices: 73--562 Score: 558
Period size: 52 Copynumber: 9.3 Consensus size: 55
63 CGGGGAGTAG
* * * * *
73 GACTTGAAGAATCTTCATCAATTGTGTCTGCT-CCTATTTCCTCAGAGAGTAT-A
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* * *
126 GACCCAAACAATCTTCAACAATCTTGTCTGCTCCCTA-TTCTTCAGA-A-TATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* * * *
178 AACTTGAAC-ATCTTCATCAATCGTGTCTGCT-CCTATTTCTGCAGAGA-TATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* * *
230 GACTCCAACAATCTTCAAC-ATCGTGTCTGCTCCCTATTTATGC--AGAGTATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* * * *
282 GACTCGAAC-ATTTTCATCAATCGTGTCTGCTCCCCATTCCTTCAGAGAGTATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* * *
336 GACTCGAACAATCTTCATCACTCGTGTCTGCT-CCTATTTCTGC--AGAGTATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
*
388 GACTCGAACAATCTTCAA-AATCGTGTCTGCTCCCCA-TTCTTCAGAGAGTATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* * *
441 GACTCGAACAATCTT-ATCAAT--TGTCTGCTCCCCATTCCTTCAGAGAGTAT--
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
* *
491 -ACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAA
1 GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
*
545 GACTCGATCAATCTTCAA
1 GACTCGAACAATCTTCAA
563 TACCATTGGG
Statistics
Matches: 371, Mismatches: 44, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
49 14 0.04
50 9 0.02
51 71 0.19
52 133 0.36
53 78 0.21
54 30 0.08
55 36 0.10
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (55 bp):
GACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAA
Found at i:542 original size:209 final size:210
Alignment explanation
Indices: 73--562 Score: 570
Period size: 209 Copynumber: 2.3 Consensus size: 210
63 CGGGGAGTAG
* * * * * * *
73 GACTTGAAGAATCTTCATCAATTGTGTCTG-CTCCTATTTCCTCAGAGAGTAT-AGACCCAAACA
1 GACTCGAACAATCTTCATCAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACA
* * * *
136 ATCTTCAACAATCTTGTCTGCTCCCTATTCTTCAGAATATAAAACTTGAACATCTTCATCAATCG
66 ATCTTCAACAATCGTGTCTGCTCCCTATTCTGCAGAATATAAAACTCGAACATCTTCATAAATCG
* *
201 TGTCTGCTCCTATTTCTGCAGAGATATAAGACTCCAACAATCTTCAACATCGTGTCTGCTCCCTA
131 TGTCTGCTCCCATTTCTGCAGAGATATAAGACTCCAACAATCTTCAACATC-TGTCTGCTCCCCA
*
266 TTTATGCAGAGTATAA
195 TTCATGCAGAGTATAA
* *
282 GACTCGAAC-ATTTTCATCAATCGTGTCTGCTCCCC-ATTCCTTCAGAGAGTATAAGACTCGAAC
1 GACTCGAACAATCTTCATCAATCGTGTCTGC-CCCCTATTTCTTCAGAGAGTATAAGACTCGAAC
* * * *
345 AATCTTCATCACTCGTGTCTGCT-CCTATTTCTGCAGAGTATAAGACTCGAACAATCTTCA-AAA
65 AATCTTCAACAATCGTGTCTGCTCCCTA-TTCTGCAGAATATAAAACTCGAAC-ATCTTCATAAA
* * *
408 TCGTGTCTGCTCCCCA-TTCTTCAGAGAGTATAAGACTCGAACAATCTT-ATCAAT-TGTCTGCT
128 TCGTGTCTGCT-CCCATTTCTGCAGAGA-TATAAGACTCCAACAATCTTCAAC-ATCTGTCTGCT
* *
470 CCCCATTCCTTCAGAG-AGT-A
190 CCCCATTCATGCAGAGTA-TAA
* * * *
490 TACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGATCA
1 GACTCGAACAATCTTCATCAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACA
555 ATCTTCAA
66 ATCTTCAA
563 TACCATTGGG
Statistics
Matches: 238, Mismatches: 32, Indels: 22
0.82 0.11 0.08
Matches are distributed among these distances:
208 32 0.13
209 99 0.42
210 76 0.32
211 31 0.13
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (210 bp):
GACTCGAACAATCTTCATCAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACA
ATCTTCAACAATCGTGTCTGCTCCCTATTCTGCAGAATATAAAACTCGAACATCTTCATAAATCG
TGTCTGCTCCCATTTCTGCAGAGATATAAGACTCCAACAATCTTCAACATCTGTCTGCTCCCCAT
TCATGCAGAGTATAA
Found at i:1487 original size:9 final size:8
Alignment explanation
Indices: 1473--1529 Score: 52
Period size: 7 Copynumber: 7.5 Consensus size: 8
1463 TGAACCCTTC
1473 TTTTTTCCA
1 TTTTTT-CA
1482 TTTTTTCA
1 TTTTTTCA
1490 TTTTTT-A
1 TTTTTTCA
1497 TTTTTT--
1 TTTTTTCA
*
1503 TTTATTTTA
1 TTT-TTTCA
1512 -TTTTT-A
1 TTTTTTCA
1518 TTTTTTCA
1 TTTTTTCA
1526 TTTT
1 TTTT
1530 CACTCATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
6 4 0.09
7 18 0.42
8 15 0.35
9 6 0.14
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTCA
Found at i:1493 original size:7 final size:7
Alignment explanation
Indices: 1481--1529 Score: 55
Period size: 8 Copynumber: 6.7 Consensus size: 7
1471 TCTTTTTTCC
1481 ATTTTTT
1 ATTTTTT
1488 CATTTTTT
1 -ATTTTTT
1496 ATTTTTT
1 ATTTTTT
*
1503 TTTATTTT
1 ATT-TTTT
1511 A-TTTTT
1 ATTTTTT
1517 ATTTTTT
1 ATTTTTT
1524 CATTTT
1 -ATTTT
1530 CACTCATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 5 0.14
7 15 0.42
8 16 0.44
ACGTcount: A:0.14, C:0.04, G:0.00, T:0.82
Consensus pattern (7 bp):
ATTTTTT
Found at i:1552 original size:36 final size:36
Alignment explanation
Indices: 1469--1552 Score: 82
Period size: 36 Copynumber: 2.3 Consensus size: 36
1459 ATCTTGAACC
* * **
1469 CTTCTTTTTTCCATTTTTTCATTTTTTATTTTTTTTT
1 CTTCTTTTTT-TATTTTTTCATTTTTCATCATTTTTT
*
1506 ATT-TTATTTTTATTTTTTCA-TTTTCACTCATTTTTT
1 CTTCTT-TTTTTATTTTTTCATTTTTCA-TCATTTTTT
1542 CTTCTTTTTTT
1 CTTCTTTTTTT
1553 CTTCAAGCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
35 5 0.13
36 25 0.66
37 8 0.21
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (36 bp):
CTTCTTTTTTTATTTTTTCATTTTTCATCATTTTTT
Found at i:11636 original size:1 final size:1
Alignment explanation
Indices: 11632--11657 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
11622 TACTTTTTGC
11632 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
11658 TTCGAGGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15119 original size:10 final size:10
Alignment explanation
Indices: 15100--15139 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
15090 AACGAACACA
15100 ATAAATGAAC
1 ATAAATGAAC
*
15110 ATAAACGAAC
1 ATAAATGAAC
15120 ATAAATGAAC
1 ATAAATGAAC
*
15130 A-AAATAAAC
1 ATAAATGAAC
15139 A
1 A
15140 AACATAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.65, C:0.12, G:0.07, T:0.15
Consensus pattern (10 bp):
ATAAATGAAC
Found at i:15373 original size:14 final size:14
Alignment explanation
Indices: 15332--15374 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
15322 AGACTGGGCT
*
15332 AAACATAAATGAAT
1 AAACATAAATGAAC
*
15346 AAACATAAACGAAC
1 AAACATAAATGAAC
* *
15360 GAACATGAATGAAC
1 AAACATAAATGAAC
15374 A
1 A
15375 TAAATGAACG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (14 bp):
AAACATAAATGAAC
Found at i:15374 original size:24 final size:24
Alignment explanation
Indices: 15340--15389 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
15330 CTAAACATAA
15340 ATGAATAAACATAAACGAACGAAC
1 ATGAATAAACATAAACGAACGAAC
* * *
15364 ATGAATGAACATAAATGAACGGAC
1 ATGAATAAACATAAACGAACGAAC
15388 AT
1 AT
15390 ATTATCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.16
Consensus pattern (24 bp):
ATGAATAAACATAAACGAACGAAC
Found at i:16429 original size:16 final size:18
Alignment explanation
Indices: 16398--16432 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16388 TCTAAAAAAC
16398 TTAAAATTACTATATATT
1 TTAAAATTACTATATATT
16416 TTAAAATATA-TATATAT
1 TTAAAAT-TACTATATAT
16433 GTATTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAATTACTATATATT
Found at i:16457 original size:25 final size:25
Alignment explanation
Indices: 16423--16478 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
16413 ATTTTAAAAT
16423 ATATATATATGTATTTTTATTGAAA
1 ATATATATATGTATTTTTATTGAAA
16448 ATATATATATGTATTTTTATTGAAA
1 ATATATATATGTATTTTTATTGAAA
16473 ATATAT
1 ATATAT
16479 TTTTTCCGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (25 bp):
ATATATATATGTATTTTTATTGAAA
Found at i:16809 original size:2 final size:2
Alignment explanation
Indices: 16760--16794 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
16750 AATTTTCCTT
16760 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16795 TAATTTTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18230 original size:2 final size:2
Alignment explanation
Indices: 18223--18294 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
18213 GTGGATTCTC
18223 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18265 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18295 CCGCTTTGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21393 original size:19 final size:19
Alignment explanation
Indices: 21365--21404 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
21355 AAAAGTAGTC
21365 AATATCACAGTTTACTATA
1 AATATCACAGTTTACTATA
*
21384 AATATGACAGTTTACTATA
1 AATATCACAGTTTACTATA
21403 AA
1 AA
21405 AATAAAGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (19 bp):
AATATCACAGTTTACTATA
Found at i:22269 original size:20 final size:21
Alignment explanation
Indices: 22244--22294 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
22234 TATGCAGGGA
22244 TATCGATACTC-GAGG-TCTAG
1 TATCGATACTCGGAGGCT-TAG
22264 TATCGATACTCGGAGGCTTAG
1 TATCGATACTCGGAGGCTTAG
22285 TATCGATACT
1 TATCGATACT
22295 GAGTCATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.38
21 17 0.59
22 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (21 bp):
TATCGATACTCGGAGGCTTAG
Found at i:22459 original size:103 final size:103
Alignment explanation
Indices: 22283--22479 Score: 226
Period size: 103 Copynumber: 1.9 Consensus size: 103
22273 TCGGAGGCTT
* *
22283 AGTATCGATACTGAGTCATTTTTGAAAACAACGAAGGCAAATTTAGTATCGATACTCATAGGAGT
1 AGTATCGATACTGAGTCATTTTTCAAAACAACGAAGGAAAATTTAGTATCGATACTCATAGGAGT
**
22348 ATTGATACCC-AGGGT-AGAGTATCAATACTCCCCATCGG
66 ATCAATACCCAAGGGTCA-A-TATCAATACTCCCCATCGG
* * * *
22386 AGTATCGATATTGA-TGCATTTTTCAAAACATCGAA-GAAAATTTTGGTATTGATACTCAGGT-G
1 AGTATCGATACTGAGT-CATTTTTCAAAACAACGAAGGAAAA-TTTAGTATCGATACTCA--TAG
22448 G-GTATCAATACCCAAGGGTCAATATCAATACT
62 GAGTATCAATACCCAAGGGTCAATATCAATACT
22480 GTTGGCCCCG
Statistics
Matches: 80, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
102 5 0.06
103 65 0.81
104 8 0.10
105 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (103 bp):
AGTATCGATACTGAGTCATTTTTCAAAACAACGAAGGAAAATTTAGTATCGATACTCATAGGAGT
ATCAATACCCAAGGGTCAATATCAATACTCCCCATCGG
Found at i:25040 original size:17 final size:18
Alignment explanation
Indices: 25018--25051 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25008 TTAGAACTCA
25018 AATTTTATTAA-TATTTT
1 AATTTTATTAAGTATTTT
*
25035 AATTTTTTTAAGTATTT
1 AATTTTATTAAGTATTT
25052 AGACTTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
AATTTTATTAAGTATTTT
Found at i:25173 original size:26 final size:26
Alignment explanation
Indices: 25135--25184 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25125 TCATAAAAAG
*
25135 AGTATTTTGATAATTTAACACATAAA
1 AGTATTTTAATAATTTAACACATAAA
25161 AGTATTTTAATAATTTAACACATA
1 AGTATTTTAATAATTTAACACATA
25185 TGCAAGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (26 bp):
AGTATTTTAATAATTTAACACATAAA
Found at i:26123 original size:17 final size:18
Alignment explanation
Indices: 26091--26124 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26081 CCATACTTGA
*
26091 TTAAATATTTAATATTTT
1 TTAAATATTAAATATTTT
26109 TTAAAT-TTAAATATTT
1 TTAAATATTAAATATTT
26125 ATTTTTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAAATATTAAATATTTT
Found at i:35037 original size:8 final size:8
Alignment explanation
Indices: 35016--35071 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
35006 ATCCTAAATC
35016 AAAAT-AT
1 AAAATAAT
35023 AAAATAAT
1 AAAATAAT
*
35031 AATATAA-
1 AAAATAAT
35038 AAAAT-AT
1 AAAATAAT
35045 AAAA-AAT
1 AAAATAAT
35052 AAGAA-AAT
1 AA-AATAAT
*
35060 AAAAGAAT
1 AAAATAAT
35068 AAAA
1 AAAA
35072 AAAGGAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
6 1 0.02
7 19 0.45
8 22 0.52
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.20
Consensus pattern (8 bp):
AAAATAAT
Found at i:35045 original size:9 final size:8
Alignment explanation
Indices: 35031--35074 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
35021 ATAAAATAAT
35031 AATATAAAA
1 AATA-AAAA
35040 AATATAAAA
1 AATA-AAAA
*
35049 AATAAGAA
1 AATAAAAA
*
35057 AATAAAAG
1 AATAAAAA
35065 AATAAAAA
1 AATAAAAA
35073 AA
1 AA
35075 GGAAAAAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
8 18 0.58
9 13 0.42
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (8 bp):
AATAAAAA
Found at i:35061 original size:24 final size:24
Alignment explanation
Indices: 35016--35074 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
35006 ATCCTAAATC
* *
35016 AAAATAT--AAAATAATAATATAA
1 AAAATATAAAAAATAAGAAAATAA
35038 AAAATATAAAAAATAAGAAAATAA
1 AAAATATAAAAAATAAGAAAATAA
35062 AAGAATA-AAAAAA
1 AA-AATATAAAAAA
35075 GGAAAAAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 7 0.22
24 21 0.66
25 4 0.12
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (24 bp):
AAAATATAAAAAATAAGAAAATAA
Found at i:35074 original size:16 final size:15
Alignment explanation
Indices: 35016--35073 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
35006 ATCCTAAATC
* *
35016 AAAATATAAAATAAT
1 AAAATAAAAAATAAA
*
35031 AATATAAAAAATATAA
1 AAAATAAAAAATA-AA
35047 AAAATAAGAAAATAAA
1 AAAATAA-AAAATAAA
*
35063 AGAATAAAAAA
1 AAAATAAAAAA
35074 AGGAAAAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 15 0.42
16 15 0.42
17 6 0.17
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAATAAAAAATAAA
Found at i:41086 original size:23 final size:23
Alignment explanation
Indices: 41060--41107 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
41050 ATAAAGTACA
*
41060 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
41083 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
41106 AT
1 AT
41108 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:41514 original size:21 final size:22
Alignment explanation
Indices: 41489--41540 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
41479 ACACTTTACA
*
41489 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
41512 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
41535 ATATAA
1 ATATAA
41541 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:41525 original size:23 final size:23
Alignment explanation
Indices: 41499--41561 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
41489 ATATAACCAC
41499 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
41522 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
41545 TACCTATTACATCATAT
1 TACCTATTACATTATAT
41562 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:42018 original size:39 final size:39
Alignment explanation
Indices: 41964--42050 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
41954 TCAAGTTGTA
* *
41964 GATTTTGATTTCCTTTTGCTTGGTATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
42003 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
42042 GATTTTGAT
1 GATTTTGAT
42051 GAGCATCGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.17, C:0.13, G:0.21, T:0.49
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:42331 original size:18 final size:18
Alignment explanation
Indices: 42308--42344 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
42298 CGAAATATAT
42308 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
42326 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
42344 A
1 A
42345 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:42767 original size:25 final size:25
Alignment explanation
Indices: 42733--42783 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
42723 TTTTTCCAAA
*
42733 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
42758 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
42783 T
1 T
42784 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:43076 original size:21 final size:22
Alignment explanation
Indices: 43051--43102 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
43041 ACACTTTACA
*
43051 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
43074 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
43097 ATATAA
1 ATATAA
43103 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:43087 original size:23 final size:23
Alignment explanation
Indices: 43061--43123 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
43051 ATATAACCAC
43061 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
43084 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
43107 TACCTATTACATCATAT
1 TACCTATTACATTATAT
43124 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:43507 original size:21 final size:22
Alignment explanation
Indices: 43482--43533 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
43472 ACACTTTACA
*
43482 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
43505 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
43528 ATATAA
1 ATATAA
43534 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:43518 original size:23 final size:23
Alignment explanation
Indices: 43492--43554 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
43482 ATATAACCAC
43492 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
43515 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
43538 TACCTATTACATCATAT
1 TACCTATTACATTATAT
43555 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:43971 original size:23 final size:23
Alignment explanation
Indices: 43912--43983 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
43902 ACACTTTACA
* *
43912 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
43935 ATATAAACGATACCTATTACATT
1 ATATAAACGCTACCTATTACATT
** *
43958 ATATAAGGGCTACCTA-TACATC
1 ATATAAACGCTACCTATTACATT
43980 ATAT
1 ATAT
43984 GTTTACCTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 9 0.21
23 33 0.79
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:44400 original size:22 final size:23
Alignment explanation
Indices: 44339--44410 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
44329 ACACTTTACA
* *
44339 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
44362 ATATAAACGATACCTATTACATT
1 ATATAAACGCTACCTATTACATT
** *
44385 ATAT-AGGGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
44407 ATAT
1 ATAT
44411 GTTTACCTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 18 0.43
23 24 0.57
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:44434 original size:427 final size:431
Alignment explanation
Indices: 42818--44695 Score: 3626
Period size: 431 Copynumber: 4.4 Consensus size: 431
42808 GAATTATTTG
*
42818 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
*
42883 GAATTTTTAATTTAATAATAATATATATCGTAACGTAA-AAATAAATCATTATACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
*
42947 ACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAA
43012 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
43077 TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
261 TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
43142 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
326 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
43207 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
391 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
43248 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
43313 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
*
43378 ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCTACAGTGAAAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAA
43443 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
43508 TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
261 TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
*
43573 AAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAAGTTATGTAATTTATGTTTCA
326 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
43638 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
391 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
43679 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
43744 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
43809 ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTG-AAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAA
43873 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
43938 TAAACGATACCTATTACATTATATAAGGGCTACCTA-TACATCATATGTTTACCTATTATATTGA
261 TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
44002 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
326 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
44067 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
391 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
*
44108 ATTTAATGATTTCATTTGCAC-AAAAAGTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
44172 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
44237 ACTAAATTAATATCTTAAAACTCACTC-AAACATAACCTTAAATTAATGTTTTCCACAGTG-AAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAA
*
44300 AAGTATGAACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
196 AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
44365 TAAACGATACCTATTACATTATAT-AGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
261 TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
44429 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
326 AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
*
44494 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTG
391 ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
*
44535 ATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
1 ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
44600 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
66 GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
44665 ACTAAATTAATATCTTAAAACTCACTCAAAA
131 ACTAAATTAATATCTTAAAACTCACTCAAAA
44696 GATGTATATA
Statistics
Matches: 1432, Mismatches: 12, Indels: 9
0.99 0.01 0.01
Matches are distributed among these distances:
426 11 0.01
427 277 0.19
428 268 0.19
429 157 0.11
430 206 0.14
431 513 0.36
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (431 bp):
ATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTA
GAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATT
ACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAA
AAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA
TAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGA
AAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCA
ATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTA
Found at i:44583 original size:856 final size:862
Alignment explanation
Indices: 42815--44695 Score: 3641
Period size: 856 Copynumber: 2.2 Consensus size: 862
42805 TTTGAATTAT
42815 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
*
42880 TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAA-AAATAAATCATTATACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATA
*
42944 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGA
43009 AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
196 AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
43074 ATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATAT
43139 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTT
43204 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATGATTTCATTTGCAC
391 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATGATTTCATTTGCAC
*
43269 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAA
456 AAAAAAGTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAA
43334 TATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
521 TATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
* *
43399 TCACTCAAAACATAACCTTAAATTAATGTTTTCTACAGTGAAAAAAGTATGGACACTTTTATAAA
586 TCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGAACACTTTTATAAA
43464 AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
651 AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
43529 TATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAA
716 TATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAA
*
43594 AAAGGATCGATATTTTTTTTAAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCAT
781 AAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCAT
43659 GTTTTCCACCTACAATA
846 GTTTTCCACCTACAATA
* *
43676 TTAATTTAATGATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
43741 TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATA
43806 ATTACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTG-
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGA
43870 AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
196 AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
43935 ATATAAACGATACCTATTACATTATATAAGGGCTACCTA-TACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATAT
43999 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTT
44064 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATGATTTCATTTGCAC
391 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATGATTTCATTTGCAC
44129 -AAAAAGTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAA
456 AAAAAAGTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAA
44193 TATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
521 TATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
44258 TCACTC-AAACATAACCTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGAACACTTTTATAAA
586 TCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGAACACTTTTATAAA
44321 AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
651 AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
44386 TAT-AGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAA
716 TATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAA
44450 AAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCAT
781 AAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCAT
44515 GTTTTCCACCTACAATA
846 GTTTTCCACCTACAATA
44532 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
44597 TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATA
44662 ATTACTAAATTAATATCTTAAAACTCACTCAAAA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAA
44696 GATGTATATA
Statistics
Matches: 1009, Mismatches: 10, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
856 304 0.30
857 91 0.09
858 32 0.03
859 134 0.13
860 155 0.15
861 208 0.21
862 85 0.08
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (862 bp):
TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATAT
TTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATA
ATTACTAAATTAATATCTTAAAACTCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGA
AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
ATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATAT
TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTT
TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATGATTTCATTTGCAC
AAAAAAGTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAA
TATATATCGTAACGTAAGAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
TCACTCAAAACATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGAACACTTTTATAAA
AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTA
TATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAA
AAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCAT
GTTTTCCACCTACAATA
Found at i:44754 original size:25 final size:25
Alignment explanation
Indices: 44697--44762 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
44687 CACTCAAAAG
*
44697 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
44722 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
44747 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
44763 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:47591 original size:183 final size:183
Alignment explanation
Indices: 47263--47675 Score: 720
Period size: 183 Copynumber: 2.3 Consensus size: 183
47253 TTTTTATACC
* *
47263 GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTA
1 GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTA
* *
47328 AATGTCGATACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGGC
66 AATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGAC
47393 ACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCG
131 ACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCG
47446 GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTA
1 GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGT-
*
47511 AAATGTCGACACTTTTTTAAATCGTATCGGCACATTTTTCTTCCAATATGGACATAAAGTACCGA
65 AAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGA
47576 CACAATATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCG
130 CACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCG
* * * **
47629 GTATATTTATACCGGTTATATTGCAAATTTACCTATTTTATTATAAT
1 GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAT
47676 ATGTTGAAAG
Statistics
Matches: 219, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
183 148 0.68
184 71 0.32
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (183 bp):
GTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTA
AATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGAC
ACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCG
Found at i:49139 original size:3 final size:3
Alignment explanation
Indices: 49131--49211 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
49121 ACTTGTTTGG
* * * **
49131 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * *
49179 AGC TTC ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
49212 GTCAGCTTCA
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:49148 original size:12 final size:12
Alignment explanation
Indices: 49135--49223 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
49125 GTTTGGATCA
* *
49135 TCATCTTCATCA
1 TCATCGTCATCT
* *
49147 TCATCATCATCA
1 TCATCGTCATCT
* *
49159 TCGTCATCATCT
1 TCATCGTCATCT
* *
49171 TCATCGCCAGCT
1 TCATCGTCATCT
*
49183 TCATCGTCATCA
1 TCATCGTCATCT
49195 TCATCGTCATCT
1 TCATCGTCATCT
*
49207 TCATCGTCAGCT
1 TCATCGTCATCT
49219 TCATC
1 TCATC
49224 TTCTGCGACC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.21, C:0.35, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:49154 original size:18 final size:18
Alignment explanation
Indices: 49135--49226 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
49125 GTTTGGATCA
* *
49135 TCATCTTCATCATCATCA
1 TCATCATCATCATCATCT
*
49153 TCATCATCGTCATCATCT
1 TCATCATCATCATCATCT
** * * *
49171 TCATCGCCAGCTTCATCG
1 TCATCATCATCATCATCT
*
49189 TCATCATCATCGTCATCT
1 TCATCATCATCATCATCT
* * *
49207 TCATCGTCAGCTTCATCT
1 TCATCATCATCATCATCT
49225 TC
1 TC
49227 TGCGACCGCT
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.21, C:0.35, G:0.08, T:0.37
Consensus pattern (18 bp):
TCATCATCATCATCATCT
Found at i:49187 original size:36 final size:36
Alignment explanation
Indices: 49147--49223 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
49137 ATCTTCATCA
*
49147 TCATCATCATCATCGTCATCATCTTCATCGCCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGCCAGCT
* * *
49183 TCATCGTCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGCCAGCT
49219 TCATC
1 TCATC
49224 TTCTGCGACC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.21, C:0.35, G:0.09, T:0.35
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGCCAGCT
Found at i:49226 original size:6 final size:6
Alignment explanation
Indices: 49135--49226 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
49125 GTTTGGATCA
* * * * * * * *
49135 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG CCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * * *
49183 TCATCG TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
49227 TGCGACCGCT
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.21, C:0.35, G:0.08, T:0.37
Consensus pattern (6 bp):
TCATCT
Found at i:51465 original size:198 final size:199
Alignment explanation
Indices: 50681--52049 Score: 2575
Period size: 199 Copynumber: 6.9 Consensus size: 199
50671 TTTAAATTAG
*
50681 TATCGATACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
50746 ATTGTATCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGATTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
50811 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AAA
50876 AAAAA
195 AAAAA
*
50881 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
50946 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
51011 CGACACTTTTTATATATGGATCGACACTTTAAGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51076 AAAA
196 AAAA
51080 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
51145 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
51210 CGACACTTTTTATAAATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51275 AAAA
196 AAAA
*
51279 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
51344 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
51409 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51472 AAAA
196 AAAA
*
51476 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
51541 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
51606 CGACACTTTTTATATATGGATCGACACTTTAT-GGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51670 AAAA
196 AAAA
*
51674 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
51739 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
51804 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51869 AAAA
196 AAAA
51873 TATCGACACAAACTATATTAGTGTCG-CACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
51937 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
*
52002 TTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
52050 GGCCATATTG
Statistics
Matches: 1146, Mismatches: 18, Indels: 10
0.98 0.02 0.01
Matches are distributed among these distances:
197 169 0.15
198 329 0.29
199 422 0.37
200 226 0.20
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAAA
Found at i:51617 original size:396 final size:398
Alignment explanation
Indices: 50681--52049 Score: 2602
Period size: 396 Copynumber: 3.4 Consensus size: 398
50671 TTTAAATTAG
*
50681 TATCGATACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
50746 ATTGTATCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGATTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
50811 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AAA
50876 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCG
195 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCG
50941 GTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
260 GTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
*
51006 GGGATCGACACTTTTTATATATGGATCGACACTTTAAGGGTGCACCCTGTTTTCCATTCATTCTG
325 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTG
51071 GAAAAAAAA
390 GAAAAAAAA
51080 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
51145 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
51210 CGACACTTTTTATAAATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51275 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGG
51340 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
51405 GGATCGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
51469 -AAAAAAA
391 AAAAAAAA
*
51476 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
51541 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
51606 CGACACTTTTTATATATGGATCGACACTTTAT-GGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
51670 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGG
51735 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
51800 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
51865 AAAAAAAA
391 AAAAAAAA
51873 TATCGACACAAACTATATTAGTGTCG-CACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
51937 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
*
52002 TTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
52050 GGCCATATTG
Statistics
Matches: 954, Mismatches: 11, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
395 172 0.18
396 305 0.32
397 107 0.11
398 170 0.18
399 200 0.21
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (398 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
AAAAAAAA
Found at i:52214 original size:19 final size:19
Alignment explanation
Indices: 52168--52216 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
52158 TTATATTCAC
*
52168 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
52187 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
52206 ATACAAAATTA
1 ATACAAAATTA
52217 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:54035 original size:33 final size:33
Alignment explanation
Indices: 53998--54063 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
53988 CATCTTAATA
*
53998 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
54031 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
54064 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:54137 original size:21 final size:21
Alignment explanation
Indices: 54097--54161 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
54087 CCCCTTATAC
* *
54097 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
54118 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
54139 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
54160 CT
1 CT
54162 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:56407 original size:17 final size:18
Alignment explanation
Indices: 56385--56427 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
56375 ATATATCCGG
56385 TATCATT-TTACCGGTTT
1 TATCATTGTTACCGGTTT
56402 TATCATTTTGTTACCGGTTT
1 TATCA--TTGTTACCGGTTT
56422 TATCAT
1 TATCAT
56428 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.22
18 1 0.04
19 2 0.09
20 15 0.65
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (18 bp):
TATCATTGTTACCGGTTT
Found at i:56417 original size:20 final size:20
Alignment explanation
Indices: 56390--56436 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
56380 TCCGGTATCA
56390 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
56409 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
56430 TTTTACC
1 TTTTACC
56437 TGTTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:57080 original size:226 final size:227
Alignment explanation
Indices: 56670--57111 Score: 746
Period size: 226 Copynumber: 2.0 Consensus size: 227
56660 AACTGCTTTA
56670 AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAA
1 AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAA
**
56735 TTTAATAATTTAATTTACACAAAATTTTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
66 TTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
* *
56800 AATTTAAATTTAACATATTAACCAAATATAATAATAAATATGTTTTCAACAGTGAAATAA-TAT-
131 AATTTAAATTTAACATATTAACCAAAGATAATAATAAATATATTTTCAACAGTGAAATAAGTATG
* *
56863 AGATACTTTTATAAAAATGATATATACTTTTTG
196 A-ACACTTTTATAAAAAGGATATATACTTTTTG
* *
56896 AAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTATAATATTAA
1 AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAA
*
56961 TTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
66 TTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
* *
57026 ATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTTC-ACAGTGAAATAAGTAT
131 AATTTAAATTTAAC-ATATTAACCAAAGATAATAATAAATATATTTTCAACAGTGAAATAAGTAT
57090 GAACACTTTTATAAAAAGGATA
195 GAACACTTTTATAAAAAGGATA
57112 GATAATTTAC
Statistics
Matches: 202, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
226 150 0.74
227 51 0.25
228 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (227 bp):
AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAA
TTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
AATTTAAATTTAACATATTAACCAAAGATAATAATAAATATATTTTCAACAGTGAAATAAGTATG
AACACTTTTATAAAAAGGATATATACTTTTTG
Found at i:59125 original size:2 final size:2
Alignment explanation
Indices: 59118--59191 Score: 148
Period size: 2 Copynumber: 37.0 Consensus size: 2
59108 ATTCTAAGAG
59118 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59160 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59192 ATCTCTTAAC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:62119 original size:12 final size:12
Alignment explanation
Indices: 62104--62128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62094 TACATATATA
62104 TTTGTATAAAAG
1 TTTGTATAAAAG
62116 TTTGTATAAAAG
1 TTTGTATAAAAG
62128 T
1 T
62129 AGTTTGAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (12 bp):
TTTGTATAAAAG
Found at i:63416 original size:2 final size:2
Alignment explanation
Indices: 63409--63477 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
63399 TTAGATTTCA
63409 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63451 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
63478 CCTGGGATAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:64826 original size:15 final size:15
Alignment explanation
Indices: 64808--64852 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
64798 TTTCGGAAAA
*
64808 TGAATTACTGGAATT
1 TGAATTACTGAAATT
64823 TGAATTACTGAAATT
1 TGAATTACTGAAATT
*
64838 TAAATTACTGAAATT
1 TGAATTACTGAAATT
64853 ACTGTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TGAATTACTGAAATT
Found at i:64891 original size:20 final size:20
Alignment explanation
Indices: 64866--64915 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
64856 GTATTTTGAA
64866 TTCTGGAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
64886 TTCTGGAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
*
64906 TTCTAGAAAA
1 TTCTGGAAAA
64916 CATATGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (20 bp):
TTCTGGAAAATGAATTACAT
Found at i:65224 original size:23 final size:23
Alignment explanation
Indices: 65196--65246 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
65186 AGTGTTATAT
65196 TATATTTTAAAAAT-TTTAATTAG
1 TATATTTTAAAAATCTTTAATT-G
* *
65219 TATATTTTAAATATCTTTACTTG
1 TATATTTTAAAAATCTTTAATTG
65242 TATAT
1 TATAT
65247 GTTTTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (23 bp):
TATATTTTAAAAATCTTTAATTG
Found at i:65282 original size:28 final size:27
Alignment explanation
Indices: 65242--65407 Score: 98
Period size: 29 Copynumber: 6.0 Consensus size: 27
65232 TCTTTACTTG
*
65242 TATATGTT-TTAAATATATAAATAATAT
1 TATATATTATTAAATATATAAA-AATAT
65269 TAT-TCATTATTAAATATATAAAAAATTAT
1 TATAT-ATTATTAAATATAT-AAAAA-TAT
65298 TATATATTATTAAA-ATA-AAAAATAT
1 TATATATTATTAAATATATAAAAATAT
* * *
65323 AATATCTTA-T-ATTATTATAATATAAT-T
1 TATATATTATTAAATA-TATAA-A-AATAT
*
65350 TATTATATTATTAAACTA-AAAATATAATAT
1 TA-TATATTATTAAA-TATATAA-A-AATAT
*
65380 TATATTATTATAAAATAT-TAATAAATAT
1 TATA-TATTATTAAATATATAA-AAATAT
65408 ATTTTAAATA
Statistics
Matches: 112, Mismatches: 10, Indels: 33
0.72 0.06 0.21
Matches are distributed among these distances:
23 1 0.01
24 2 0.02
25 12 0.11
26 8 0.07
27 8 0.07
28 29 0.26
29 36 0.32
30 14 0.12
31 2 0.02
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.46
Consensus pattern (27 bp):
TATATATTATTAAATATATAAAAATAT
Found at i:65296 original size:26 final size:28
Alignment explanation
Indices: 65250--65306 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
65240 TGTATATGTT
65250 TTAAATATATAAATAATATTATTCAT-TA
1 TTAAATATATAAATAATATTATT-ATATA
65278 TTAAATATATAAA-AA-ATTATTATATA
1 TTAAATATATAAATAATATTATTATATA
65304 TTA
1 TTA
65307 TTAAAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 2 0.07
26 11 0.39
27 2 0.07
28 13 0.46
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (28 bp):
TTAAATATATAAATAATATTATTATATA
Found at i:65344 original size:23 final size:23
Alignment explanation
Indices: 65318--65362 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
65308 TAAAATAAAA
*
65318 AATATAATATCTTATATTATTAT
1 AATATAATATATTATATTATTAT
*
65341 AATATAATTTATTATATTATTA
1 AATATAATATATTATATTATTA
65363 AACTAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
AATATAATATATTATATTATTAT
Found at i:65407 original size:23 final size:22
Alignment explanation
Indices: 65368--65426 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
65358 TATTAAACTA
*
65368 AAAATA-TAATATTATATTATTAT
1 AAAATATTAATA-AATA-TATTAT
*
65391 AAAATATTAATAAATATATTTT
1 AAAATATTAATAAATATATTAT
*
65413 AAATATTTTAATAA
1 AAA-ATATTAATAA
65427 TTAATATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 8 0.26
23 18 0.58
24 5 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
AAAATATTAATAAATATATTAT
Found at i:70659 original size:23 final size:23
Alignment explanation
Indices: 70591--70679 Score: 73
Period size: 23 Copynumber: 4.0 Consensus size: 23
70581 TATATTAATA
*
70591 TTTAAAATAATTAGAATAATATA-
1 TTTATAATAATTA-AATAATATAT
*
70614 TTTATAA-ATATT---TATTATAT
1 TTTATAATA-ATTAAATAATATAT
**
70634 TTTAT-ATGGTTAAATTAATATAT
1 TTTATAATAATTAAA-TAATATAT
70657 TTTATAATAATTAAATAATATAT
1 TTTATAATAATTAAATAATATAT
70680 AATAAAAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
19 9 0.18
20 5 0.10
22 1 0.02
23 29 0.57
24 7 0.14
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TTTATAATAATTAAATAATATAT
Found at i:73315 original size:2 final size:2
Alignment explanation
Indices: 73308--73341 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
73298 AAAATAAACA
73308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73342 TCACATGAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73861 original size:18 final size:18
Alignment explanation
Indices: 73840--73879 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
73830 TGTGTGTAAT
*
73840 TATATATATAGGTATAAG
1 TATATATATACGTATAAG
*
73858 TATATATATACTTATAAG
1 TATATATATACGTATAAG
73876 TATA
1 TATA
73880 ATGTATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (18 bp):
TATATATATACGTATAAG
Found at i:74003 original size:23 final size:23
Alignment explanation
Indices: 73976--74031 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
73966 TATAGTGTAC
* *
73976 ATTATATATACATGCATTATCA-T
1 ATTATATA-ACATGCATCATAAGT
*
73999 ATTATCATAACATTCATCATAAGT
1 ATTAT-ATAACATGCATCATAAGT
74023 ATTATATAA
1 ATTATATAA
74032 TATATATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 19 0.68
24 9 0.32
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (23 bp):
ATTATATAACATGCATCATAAGT
Found at i:76295 original size:19 final size:19
Alignment explanation
Indices: 76268--76312 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
76258 TAAATATATT
*
76268 TGATTTTTATAGTAAACTG
1 TGATATTTATAGTAAACTG
*
76287 TGATATTTATGGTAAACTG
1 TGATATTTATAGTAAACTG
76306 TGATATT
1 TGATATT
76313 GACTATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (19 bp):
TGATATTTATAGTAAACTG
Found at i:89168 original size:3 final size:3
Alignment explanation
Indices: 89156--89243 Score: 169
Period size: 3 Copynumber: 29.7 Consensus size: 3
89146 TAGACATGGA
89156 ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
89203 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
89244 CAGAAAAGAA
Statistics
Matches: 84, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.02
3 82 0.98
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:92678 original size:20 final size:20
Alignment explanation
Indices: 92651--92705 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
92641 ATAACCAACG
92651 AATTCGCAACACGAACTCCA
1 AATTCGCAACACGAACTCCA
* **
92671 ATTTCGCAACAC-AGTTTCCA
1 AATTCGCAACACGA-ACTCCA
92691 AATTCGCAACACGAA
1 AATTCGCAACACGAA
92706 TTTGGATTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.38, C:0.31, G:0.11, T:0.20
Consensus pattern (20 bp):
AATTCGCAACACGAACTCCA
Found at i:92879 original size:20 final size:20
Alignment explanation
Indices: 92854--92921 Score: 136
Period size: 20 Copynumber: 3.4 Consensus size: 20
92844 CGCGTTTCAA
92854 TTTCGCAATGCGAATTTTAC
1 TTTCGCAATGCGAATTTTAC
92874 TTTCGCAATGCGAATTTTAC
1 TTTCGCAATGCGAATTTTAC
92894 TTTCGCAATGCGAATTTTAC
1 TTTCGCAATGCGAATTTTAC
92914 TTTCGCAA
1 TTTCGCAA
92922 CACAAATATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (20 bp):
TTTCGCAATGCGAATTTTAC
Found at i:93036 original size:22 final size:22
Alignment explanation
Indices: 93011--93063 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
93001 TCTCACTCTC
* *
93011 TCCGACGACATTTGTCTCCATA
1 TCCGACGACATCTGTCCCCATA
*
93033 TCCGGCGACATCTGTCCCCATA
1 TCCGACGACATCTGTCCCCATA
*
93055 TCCGCCGAC
1 TCCGACGAC
93064 CCCCCTCCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.19, C:0.40, G:0.17, T:0.25
Consensus pattern (22 bp):
TCCGACGACATCTGTCCCCATA
Found at i:93393 original size:20 final size:20
Alignment explanation
Indices: 93365--93421 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
93355 AGTTTTGATT
*
93365 TTCGTGTTGCGAATTTCACG
1 TTCGAGTTGCGAATTTCACG
**
93385 TTCGAGTTGCGAATTTCATT
1 TTCGAGTTGCGAATTTCACG
*
93405 TTCGAGTTGCGATTTTC
1 TTCGAGTTGCGAATTTC
93422 GTGTTGTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.44
Consensus pattern (20 bp):
TTCGAGTTGCGAATTTCACG
Found at i:95013 original size:42 final size:42
Alignment explanation
Indices: 94939--95066 Score: 163
Period size: 42 Copynumber: 3.0 Consensus size: 42
94929 CCCCACTTTT
*
94939 TCATCGAGTCGATTCT-TCACTTCGACACCGAGATCCATCACC
1 TCATCGAGTCGATTCTCT-ACTTTGACACCGAGATCCATCACC
*
94981 TCATCGAGTCGATTCTCTACTTTGACAACGAGATCCATCACC
1 TCATCGAGTCGATTCTCTACTTTGACACCGAGATCCATCACC
* * *
95023 TAATCGAG-CTGATTCTAC-ACCTTGACACCGAGAGCCATCACC
1 TCATCGAGTC-GATTCT-CTACTTTGACACCGAGATCCATCACC
95065 TC
1 TC
95067 TAGCCTACTC
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 73 0.96
43 2 0.03
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.26
Consensus pattern (42 bp):
TCATCGAGTCGATTCTCTACTTTGACACCGAGATCCATCACC
Found at i:95306 original size:63 final size:62
Alignment explanation
Indices: 95223--95373 Score: 178
Period size: 63 Copynumber: 2.4 Consensus size: 62
95213 GGTGCCTTAT
* * *
95223 GTGATGAGGTCAGTGCTTTACGTGATAAGATCGGTGTTTTACATGATGACAATGGTG-TATGGC
1 GTGATGAGGT-AGTGCTTTACGTGATAAGATAGCTGTTTTACATGATGACAATGGTGCT-TGAC
* * * * * *
95286 GTGATGAGGTAGGGTCTTTACGTGGTGAGGTAGCTGTTTTACGTGATGACAATGGTGCTTTAC
1 GTGATGAGGTAGTG-CTTTACGTGATAAGATAGCTGTTTTACATGATGACAATGGTGCTTGAC
*
95349 GTGGTGAGGTAGTGCTTTACGTGAT
1 GTGATGAGGTAGTGCTTTACGTGAT
95374 GAGGTAGGTG
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
62 13 0.18
63 60 0.81
64 1 0.01
ACGTcount: A:0.21, C:0.11, G:0.34, T:0.34
Consensus pattern (62 bp):
GTGATGAGGTAGTGCTTTACGTGATAAGATAGCTGTTTTACATGATGACAATGGTGCTTGAC
Found at i:95331 original size:42 final size:42
Alignment explanation
Indices: 95285--95392 Score: 141
Period size: 41 Copynumber: 2.6 Consensus size: 42
95275 TGGTGTATGG
*
95285 CGTGATGAGGTAGGGT-CTTTACGTGGTGAGGTAGCTGTTTTA
1 CGTGATGAGGTAGGGTGCTTTACGTGGTGAGGTAG-TGCTTTA
** *
95327 CGTGATGA-CAATGGTGCTTTACGTGGTGAGGTAGTGCTTTA
1 CGTGATGAGGTAGGGTGCTTTACGTGGTGAGGTAGTGCTTTA
*
95368 CGTGATGAGGTA-GGTGCTCTACGTG
1 CGTGATGAGGTAGGGTGCTTTACGTG
95393 AAATTGTTTC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
41 30 0.53
42 27 0.47
ACGTcount: A:0.18, C:0.12, G:0.37, T:0.33
Consensus pattern (42 bp):
CGTGATGAGGTAGGGTGCTTTACGTGGTGAGGTAGTGCTTTA
Found at i:95384 original size:41 final size:42
Alignment explanation
Indices: 95285--95392 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
95275 TGGTGTATGG
*
95285 CGTGATGAGGTAGG-GTCTTTACGTGGTGAGGTAGCTGTTTTA
1 CGTGATGAGGTAGGTG-CTTTACGTGGTGAGGTAGCTGCTTTA
**
95327 CGTGATGA-CAATGGTGCTTTACGTGGTGAGGTAG-TGCTTTA
1 CGTGATGAGGTA-GGTGCTTTACGTGGTGAGGTAGCTGCTTTA
*
95368 CGTGATGAGGTAGGTGCTCTACGTG
1 CGTGATGAGGTAGGTGCTTTACGTG
95393 AAATTGTTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
41 27 0.47
42 29 0.51
43 1 0.02
ACGTcount: A:0.18, C:0.12, G:0.37, T:0.33
Consensus pattern (42 bp):
CGTGATGAGGTAGGTGCTTTACGTGGTGAGGTAGCTGCTTTA
Found at i:95390 original size:21 final size:21
Alignment explanation
Indices: 95204--95393 Score: 122
Period size: 21 Copynumber: 9.1 Consensus size: 21
95194 ACCTCCACGG
* * *
95204 GATGAGTTAGGTGCCTTATGT
1 GATGAGGTAGGTGCTTTACGT
95225 GATGAGGTCA-GTGCTTTACGT
1 GATGAGGT-AGGTGCTTTACGT
* * * * *
95246 GATAAGATCGGTGTTTTACAT
1 GATGAGGTAGGTGCTTTACGT
** **
95267 GATGA-CAATGGTG-TATGGCGT
1 GATGAGGTA-GGTGCT-TTACGT
95288 GATGAGGTAGG-GTCTTTACGT
1 GATGAGGTAGGTG-CTTTACGT
* * *
95309 GGTGAGGTAGCTGTTTTACGT
1 GATGAGGTAGGTGCTTTACGT
**
95330 GATGA-CAATGGTGCTTTACGT
1 GATGAGGTA-GGTGCTTTACGT
*
95351 GGTGAGGTA-GTGCTTTACGT
1 GATGAGGTAGGTGCTTTACGT
*
95371 GATGAGGTAGGTGCTCTACGT
1 GATGAGGTAGGTGCTTTACGT
95392 GA
1 GA
95394 AATTGTTTCA
Statistics
Matches: 126, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
20 22 0.17
21 99 0.79
22 5 0.04
ACGTcount: A:0.21, C:0.11, G:0.35, T:0.34
Consensus pattern (21 bp):
GATGAGGTAGGTGCTTTACGT
Found at i:95511 original size:4 final size:4
Alignment explanation
Indices: 95502--95547 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
95492 TTTTTCGACA
* * * *
95502 TTAT TTAT TTAT TTAT TTAT TTAA TAAT TTAT ATAT TAAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
95548 TTAGAGGCCC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:96762 original size:26 final size:28
Alignment explanation
Indices: 96727--96778 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
96717 TATACTCCGT
96727 GGGACTTTCTTCTTCTTCTT-TTCTTTG
1 GGGACTTTCTTCTTCTTCTTCTTCTTTG
*
96754 GGGA-TTTCTTCTTCTTTTTCTTCTT
1 GGGACTTTCTTCTTCTTCTTCTTCTT
96779 CAGGGTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.04, C:0.21, G:0.13, T:0.62
Consensus pattern (28 bp):
GGGACTTTCTTCTTCTTCTTCTTCTTTG
Found at i:97012 original size:24 final size:24
Alignment explanation
Indices: 96984--97037 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
96974 CTGAAACATC
96984 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* * *
97008 ATCAAAGTTCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
97032 ATCAAA
1 ATCAAA
97038 TTTTGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:97973 original size:20 final size:19
Alignment explanation
Indices: 97948--97999 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 19
97938 CCCAAAACAT
97948 TTGTGTTGCGAAATTAAAA
1 TTGTGTTGCGAAATTAAAA
97967 CTTGTGTTGCGAAATTAAAA
1 -TTGTGTTGCGAAATTAAAA
97987 TGTGTGTTGCGAA
1 T-TGTGTTGCGAA
98000 TTCGAAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.37
Consensus pattern (19 bp):
TTGTGTTGCGAAATTAAAA
Found at i:98136 original size:22 final size:21
Alignment explanation
Indices: 98102--98142 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
98092 TTGCGAAAAA
* *
98102 CAAATTTGTGTTGCGAAATTGT
1 CAAATTCGAGTTGC-AAATTGT
98124 CAAATTCGAGTTGCAAATT
1 CAAATTCGAGTTGCAAATT
98143 TGACTTCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (21 bp):
CAAATTCGAGTTGCAAATTGT
Found at i:99192 original size:41 final size:41
Alignment explanation
Indices: 99135--99221 Score: 165
Period size: 41 Copynumber: 2.1 Consensus size: 41
99125 TCCATTTCGT
*
99135 GTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGC
1 GTTGCAATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGC
99176 GTTGCAATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGC
1 GTTGCAATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGC
99217 GTTGC
1 GTTGC
99222 GATAGTTGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (41 bp):
GTTGCAATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGC
Found at i:99241 original size:62 final size:62
Alignment explanation
Indices: 99111--99286 Score: 282
Period size: 62 Copynumber: 2.9 Consensus size: 62
99101 ACGTTGCATT
* * ** *
99111 TCGCGTTGCGATTTTCCATTTCGTGTTGCGAT-TTTCCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAATTCGCGTTGCGATAGTTGAAAA
* *
99172 TCGCGTTGCAATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAATTCGCGTTGCGATAGTTGAAAA
99234 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAATTCGCGTTGCGAT
1 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAATTCGCGTTGCGAT
99287 TTTCCATTTC
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
61 30 0.29
62 75 0.71
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (62 bp):
TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAATTCGCGTTGCGATAGTTGAAAA
Found at i:99258 original size:41 final size:41
Alignment explanation
Indices: 99213--99380 Score: 210
Period size: 41 Copynumber: 3.8 Consensus size: 41
99203 TAGTTGAAAA
99213 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATT
*
99254 TCGCGTTGCGATAGTTGAAATTCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATT
99295 TCGCGTTGCGATAGTTGAAAATCGAGTTGAAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGC-------G---AT--AGTTGAAAATCGCGTTGCGATTTTCCATT
*
99348 TCGCGTTGCGATAGTTGAAATTCGCGTTGCGAT
1 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGAT
99381 AGTCTACAGT
Statistics
Matches: 112, Mismatches: 3, Indels: 24
0.81 0.02 0.17
Matches are distributed among these distances:
41 69 0.62
43 2 0.02
46 1 0.01
48 1 0.01
51 2 0.02
53 37 0.33
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (41 bp):
TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATT
Found at i:99346 original size:53 final size:53
Alignment explanation
Indices: 99266--99376 Score: 195
Period size: 53 Copynumber: 2.1 Consensus size: 53
99256 GCGTTGCGAT
*
99266 AGTTGAAATTCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCG
1 AGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCG
*
99319 AGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAATTCG
1 AGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCG
*
99372 CGTTG
1 AGTTG
99377 CGATAGTCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (53 bp):
AGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCG
Found at i:99373 original size:21 final size:21
Alignment explanation
Indices: 99319--99383 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
99309 TTGAAAATCG
*
99319 AGTTGAAAATCGCGTTGCGAT
1 AGTTGAAATTCGCGTTGCGAT
* ** *
99340 -TTTCCATTTCGCGTTGCGAT
1 AGTTGAAATTCGCGTTGCGAT
99360 AGTTGAAATTCGCGTTGCGAT
1 AGTTGAAATTCGCGTTGCGAT
99381 AGT
1 AGT
99384 CTACAGTTGT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (21 bp):
AGTTGAAATTCGCGTTGCGAT
Found at i:99400 original size:22 final size:22
Alignment explanation
Indices: 99372--99424 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
99362 TTGAAATTCG
99372 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
99394 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
99416 CGTTGCGAT
1 CGTTGCGAT
99425 TTTCCAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:99951 original size:39 final size:39
Alignment explanation
Indices: 99897--99992 Score: 192
Period size: 39 Copynumber: 2.5 Consensus size: 39
99887 CCTGAATATT
99897 CACATTGTATTGGAAACAAGTGTTGGTAATGCTCAATCC
1 CACATTGTATTGGAAACAAGTGTTGGTAATGCTCAATCC
99936 CACATTGTATTGGAAACAAGTGTTGGTAATGCTCAATCC
1 CACATTGTATTGGAAACAAGTGTTGGTAATGCTCAATCC
99975 CACATTGTATTGGAAACA
1 CACATTGTATTGGAAACA
99993 CTATTGGGAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (39 bp):
CACATTGTATTGGAAACAAGTGTTGGTAATGCTCAATCC
Found at i:100110 original size:6 final size:6
Alignment explanation
Indices: 100099--100137 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
100089 TCTCGTCTCG
100099 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
100138 AATACGTGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.15, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:100252 original size:21 final size:21
Alignment explanation
Indices: 100227--100425 Score: 199
Period size: 21 Copynumber: 9.7 Consensus size: 21
100217 GAATTTGGAA
*
100227 AATCGCAACGCGATTTTCAAC
1 AATCGCAACGCGAATTTCAAC
*
100248 AATCGCAACGCGATTTTCAAC
1 AATCGCAACGCGAATTTCAAC
* **
100269 AATCGCAACGCGAAATGGAA-
1 AATCGCAACGCGAATTTCAAC
100289 AATCGCAACGCGAATTTCAAC
1 AATCGCAACGCGAATTTCAAC
* * **
100310 TATCGCAACGCGAAATGGAA-
1 AATCGCAACGCGAATTTCAAC
*
100330 AATCGCAACGCGATTTTCAAC
1 AATCGCAACGCGAATTTCAAC
* * **
100351 TATCGCAACGCGAAATGGAA-
1 AATCGCAACGCGAATTTCAAC
* **
100371 AATCGCAACGCGAAATGGAA-
1 AATCGCAACGCGAATTTCAAC
*
100391 AATCGCAACGCGATTTTCAAC
1 AATCGCAACGCGAATTTCAAC
*
100412 TATCGCAACGCGAA
1 AATCGCAACGCGAA
100426 ATGCAACGCG
Statistics
Matches: 147, Mismatches: 28, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
20 67 0.46
21 80 0.54
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (21 bp):
AATCGCAACGCGAATTTCAAC
Found at i:100301 original size:41 final size:41
Alignment explanation
Indices: 100248--100570 Score: 352
Period size: 41 Copynumber: 7.9 Consensus size: 41
100238 GATTTTCAAC
*
100248 AATCGCAACGCGATTTTCAACAATCGCAACGCGAAATGGAA
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
*
100289 AATCGCAACGCGAATTTCAACTATCGCAACGCGAAATGGAA
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
100330 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
** ** * ** **
100371 AATCGCAACGCGAAATGGAA-AATCGCAACGCGATTTTCAA
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
* ** * * * *
100411 CTATCGCAACGCGAAATGCAAC--GCG-AATTTGCGATAGTGG-A
1 -AATCGCAACGCGATTTTCAACTATCGCAA--CGCGA-AATGGAA
* *** *
100452 GATCGCGTTGCGA-TTTCAACTATCGCAACGCGAAATAGAA
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
100492 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
*
100533 AAACGCAACGCGATTTTCAACTATCGCAACGCGAAATG
1 AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATG
100571 CAACGCGAAT
Statistics
Matches: 236, Mismatches: 36, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
39 10 0.04
40 40 0.17
41 183 0.78
42 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.19
Consensus pattern (41 bp):
AATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA
Found at i:100378 original size:61 final size:60
Alignment explanation
Indices: 100311--100504 Score: 243
Period size: 61 Copynumber: 3.2 Consensus size: 60
100301 AATTTCAACT
100311 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAAT-GAAA
*
100372 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATG-CA
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGAAA
* * * ***
100431 A-CGCGAATTTGCGATAGTGG-AGATCGCGTTGCGA-TTTCAACTATCGCAACGCGAAATAGAAA
1 ATCGC-AA--CGCGA-AATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAAT-GAAA
100493 ATCGCAACGCGA
1 ATCGCAACGCGA
100505 TTTTCAACTA
Statistics
Matches: 117, Mismatches: 9, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
58 3 0.03
59 4 0.03
60 28 0.24
61 71 0.61
62 8 0.07
63 3 0.03
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (60 bp):
ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGAAA
Found at i:100484 original size:20 final size:20
Alignment explanation
Indices: 100461--100566 Score: 81
Period size: 20 Copynumber: 5.2 Consensus size: 20
100451 AGATCGCGTT
100461 GCGATTTCAACTATCGCAAC
1 GCGATTTCAACTATCGCAAC
** **
100481 GCGAAAT-AGAAAATCGCAAC
1 GCGATTTCA-ACTATCGCAAC
100501 GCGATTTTCAACTATCGCAAC
1 GCGA-TTTCAACTATCGCAAC
* ** * *
100522 GCGAAATGGAA-AAACGCAAC
1 GCG-ATTTCAACTATCGCAAC
100542 GCGATTTTCAACTATCGCAAC
1 GCGA-TTTCAACTATCGCAAC
100563 GCGA
1 GCGA
100567 AATGCAACGC
Statistics
Matches: 62, Mismatches: 18, Indels: 11
0.68 0.20 0.12
Matches are distributed among these distances:
19 2 0.03
20 31 0.50
21 27 0.44
22 2 0.03
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (20 bp):
GCGATTTCAACTATCGCAAC
Found at i:100923 original size:54 final size:54
Alignment explanation
Indices: 100864--100980 Score: 225
Period size: 54 Copynumber: 2.2 Consensus size: 54
100854 TAATATTACT
*
100864 GGAATATAACATTATTATGGGAATGTTGTATTACCTTATTTGGTTTATTTAGCA
1 GGAATATAACATTACTATGGGAATGTTGTATTACCTTATTTGGTTTATTTAGCA
100918 GGAATATAACATTACTATGGGAATGTTGTATTACCTTATTTGGTTTATTTAGCA
1 GGAATATAACATTACTATGGGAATGTTGTATTACCTTATTTGGTTTATTTAGCA
100972 GGAATATAA
1 GGAATATAA
100981 AGTTATAGTT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
GGAATATAACATTACTATGGGAATGTTGTATTACCTTATTTGGTTTATTTAGCA
Found at i:101250 original size:19 final size:18
Alignment explanation
Indices: 101218--101253 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
101208 ATATTTATTT
*
101218 ATATAAAAATATAATATA
1 ATATAAAAAAATAATATA
101236 ATATGAAAAAAATAATAT
1 ATAT-AAAAAAATAATAT
101254 CATGATCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
ATATAAAAAAATAATATA
Found at i:101949 original size:25 final size:25
Alignment explanation
Indices: 101898--101949 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
101888 CACCTGACTT
*
101898 AAACCCGACCCAATATATAACTTAA
1 AAACCCGACCCAATATATAACTAAA
101923 AAACCCGACCCGAA-ATAATAA-TAAA
1 AAACCCGACCC-AATAT-ATAACTAAA
101948 AA
1 AA
101950 TATTATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.54, C:0.25, G:0.06, T:0.15
Consensus pattern (25 bp):
AAACCCGACCCAATATATAACTAAA
Found at i:105314 original size:2 final size:2
Alignment explanation
Indices: 105309--105338 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
105299 GAGTAATTAA
105309 AT AT AT AT AT AT AT AT AT AT AT AT AGT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
105339 AGTATTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:108175 original size:31 final size:31
Alignment explanation
Indices: 108140--108211 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
108130 GTTAGCGACT
* * *
108140 ATTTTCTAACGGTTAGATAAATCTAATGATA
1 ATTTTATAACAGTTAGATAAATCTAATGAAA
*
108171 ATTTTATAACAGTTCGATAAATCTAATGAAA
1 ATTTTATAACAGTTAGATAAATCTAATGAAA
*
108202 ATTTTGTAAC
1 ATTTTATAAC
108212 TTTTGAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (31 bp):
ATTTTATAACAGTTAGATAAATCTAATGAAA
Found at i:109902 original size:21 final size:23
Alignment explanation
Indices: 109878--109921 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
109868 TACGGTTTTT
*
109878 TAATATTT-T-TGCCTTTATGAC
1 TAATATTTCTCTGCCTGTATGAC
*
109899 TAATTTTTCTCTGCCTGTATGAC
1 TAATATTTCTCTGCCTGTATGAC
109922 ACATTTTCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 11 0.58
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.50
Consensus pattern (23 bp):
TAATATTTCTCTGCCTGTATGAC
Found at i:113436 original size:35 final size:34
Alignment explanation
Indices: 113391--113476 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 34
113381 CCTGAACCCA
113391 AAAATATTATATATATAATTAATATAAAAAAATAT
1 AAAATATTATATATATAATTAATAT-AAAAAATAT
*
113426 AAAATATTATATATATAATTAATATAAAATATAT
1 AAAATATTATATATATAATTAATATAAAAAATAT
113460 AAAATATTATATATATA
1 AAAATATTATATATATA
113477 TAATCGGGGA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 25 0.50
35 25 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (34 bp):
AAAATATTATATATATAATTAATATAAAAAATAT
Found at i:113855 original size:19 final size:19
Alignment explanation
Indices: 113823--113860 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
113813 TCGTGTAAGC
*
113823 TTAACAGAATTTATACTTTT
1 TTAACAGAAATTATA-TTTT
113843 TTAA-AGAAATTATATTTT
1 TTAACAGAAATTATATTTT
113861 GGGTGAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
TTAACAGAAATTATATTTT
Found at i:113941 original size:59 final size:60
Alignment explanation
Indices: 113869--113996 Score: 150
Period size: 59 Copynumber: 2.1 Consensus size: 60
113859 TTGGGTGAAG
* * **
113869 TACAGAAATGGTCCCTCGGTGATAGGGTATTGTTTTATTAAATC-CTCAACTATTAAAAGT
1 TACA-AAATGGTCCCTCGATCATAGAATATTGTTTTATTAAATCTCTCAACTATTAAAAGT
* * * * * *
113929 TACAAAATGGTCCTTCGATCATAGAATGTTGTTTTGTTAAGTCTTTCGACTATTAAAAGT
1 TACAAAATGGTCCCTCGATCATAGAATATTGTTTTATTAAATCTCTCAACTATTAAAAGT
113989 TACAAAAT
1 TACAAAAT
113997 AATCACCTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 31 0.54
60 26 0.46
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (60 bp):
TACAAAATGGTCCCTCGATCATAGAATATTGTTTTATTAAATCTCTCAACTATTAAAAGT
Found at i:115418 original size:29 final size:30
Alignment explanation
Indices: 115359--115424 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
115349 TCTGAGATGA
*
115359 TAAACGGGGACGGGGAAAAACCGAATTTTT
1 TAAACGGGGACGGAGAAAAACCGAATTTTT
* * *
115389 TAAATGGGGATGGAGAAAAACCGTATTTTT
1 TAAACGGGGACGGAGAAAAACCGAATTTTT
115419 TAAACG
1 TAAACG
115425 ATGATGGGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.24
Consensus pattern (30 bp):
TAAACGGGGACGGAGAAAAACCGAATTTTT
Found at i:115525 original size:2 final size:2
Alignment explanation
Indices: 115518--115546 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
115508 ATTTAAATTA
115518 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
115547 AAGGAGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:116328 original size:22 final size:22
Alignment explanation
Indices: 116300--116375 Score: 152
Period size: 22 Copynumber: 3.5 Consensus size: 22
116290 GTTGATTCAA
116300 TTTTGACAATCAAACAATATTG
1 TTTTGACAATCAAACAATATTG
116322 TTTTGACAATCAAACAATATTG
1 TTTTGACAATCAAACAATATTG
116344 TTTTGACAATCAAACAATATTG
1 TTTTGACAATCAAACAATATTG
116366 TTTTGACAAT
1 TTTTGACAAT
116376 TTAAACTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTTGACAATCAAACAATATTG
Found at i:117526 original size:22 final size:22
Alignment explanation
Indices: 117501--117551 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
117491 CACCACAGCT
*
117501 CGTATAAATGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
*
117523 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
117545 CGTAGAA
1 CGTAGAA
117552 TTATGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.18
Consensus pattern (22 bp):
CGTAGAAATGCACCGAAGTGCC
Found at i:117552 original size:22 final size:22
Alignment explanation
Indices: 117509--117553 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
117499 CTCGTATAAA
117509 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
117531 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
117553 T
1 T
117554 ATGTCCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:117814 original size:30 final size:31
Alignment explanation
Indices: 117773--117832 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
117763 TAGCCATAGT
*
117773 ATTTCCATACCTTTAACACATAG-GCATATC
1 ATTTACATACCTTTAACACATAGTGCATATC
*
117803 ATTTACATACCTTTATCACATAGTGCATAT
1 ATTTACATACCTTTAACACATAGTGCATAT
117833 AACTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATATC
Found at i:117889 original size:29 final size:29
Alignment explanation
Indices: 117847--117918 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
117837 TTTTCTGCAT
**
117847 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATACAA
*
117876 ATTCATGTCATGTAATACATTTAATACAA
1 ATTCATGTCATGTAATACATATAATACAA
117905 ATTCATGTCATGTA
1 ATTCATGTCATGTA
117919 TCATAATATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATACAA
Found at i:118367 original size:67 final size:67
Alignment explanation
Indices: 118222--118372 Score: 191
Period size: 68 Copynumber: 2.2 Consensus size: 67
118212 TTTTCTCATG
* * *
118222 GGGGAATCGGTTCCCCCCCCTGGGGTATCGGTTCCCCTATAGCATTCTGGAATTTCTTATACGAT
1 GGGGTATCGGTT-CCCCCCCTGGGGTATCGATTCCCCTATAGCATTCTGGAAATTCTTATACGAT
*
118287 GAG
65 GAA
*
118290 GGGGTATCGGTTCCCCCCCTGGGGGTATCGATTCCCCTCTTA-CATTCTGGAAATTCATT-T-CG
1 GGGGTATCGGTTCCCCCCCT-GGGGTATCGATTCCCCT-ATAGCATTCTGGAAATTC-TTATACG
*
118352 TTGAA
63 ATGAA
118357 GGGGTATCGGTTCCCC
1 GGGGTATCGGTTCCCC
118373 TTGAATGGGT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
67 29 0.39
68 41 0.55
69 4 0.05
ACGTcount: A:0.16, C:0.27, G:0.26, T:0.30
Consensus pattern (67 bp):
GGGGTATCGGTTCCCCCCCTGGGGTATCGATTCCCCTATAGCATTCTGGAAATTCTTATACGATG
AA
Found at i:118382 original size:21 final size:21
Alignment explanation
Indices: 118352--118393 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
118342 ATTCATTTCG
* *
118352 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
118373 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
118394 CAACCCAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.29
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:124446 original size:22 final size:22
Alignment explanation
Indices: 124421--124471 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
124411 CACCACAGCT
*
124421 CGTATAAATGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
*
124443 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
124465 CGTAGAA
1 CGTAGAA
124472 TTATGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.18
Consensus pattern (22 bp):
CGTAGAAATGCACCGAAGTGCC
Found at i:124472 original size:22 final size:22
Alignment explanation
Indices: 124429--124473 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
124419 CTCGTATAAA
124429 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
124451 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
124473 T
1 T
124474 ATGTCCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:124734 original size:30 final size:31
Alignment explanation
Indices: 124693--124752 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
124683 TAGCCATAGT
*
124693 ATTTCCATACCTTTAACACATAG-GCATATC
1 ATTTACATACCTTTAACACATAGTGCATATC
*
124723 ATTTACATACCTTTATCACATAGTGCATAT
1 ATTTACATACCTTTAACACATAGTGCATAT
124753 AACTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATATC
Found at i:124809 original size:29 final size:29
Alignment explanation
Indices: 124767--124838 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
124757 TTTTCTGCAT
**
124767 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATACAA
*
124796 ATTCATGTCATGTAATACATTTAATACAA
1 ATTCATGTCATGTAATACATATAATACAA
124825 ATTCATGTCATGTA
1 ATTCATGTCATGTA
124839 TCATAATATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATACAA
Found at i:125280 original size:67 final size:67
Alignment explanation
Indices: 125142--125291 Score: 198
Period size: 67 Copynumber: 2.2 Consensus size: 67
125132 TTTTCTCATG
* * *
125142 GGGGAATCGGTTCCCCCCCTGGGGTATCGGTTCCCCTATAGCATTCTGGAATTTCTTATACGATG
1 GGGGTATCGGTTCCCCCCCTGGGGTATCGATTCCCCTATAGCATTCTGGAAATTCTTATACGATG
*
125207 AG
66 AA
*
125209 GGGGTATCGGTTCCCCCCCTGGGGGTATCGATTCCCCTCTTA-CATTCTGGAAATTCATT-T-CG
1 GGGGTATCGGTTCCCCCCCT-GGGGTATCGATTCCCCT-ATAGCATTCTGGAAATTC-TTATACG
*
125271 TTGAA
63 ATGAA
125276 GGGGTATCGGTTCCCC
1 GGGGTATCGGTTCCCC
125292 TTGAATGGGT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
67 40 0.54
68 30 0.41
69 4 0.05
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.31
Consensus pattern (67 bp):
GGGGTATCGGTTCCCCCCCTGGGGTATCGATTCCCCTATAGCATTCTGGAAATTCTTATACGATG
AA
Found at i:125301 original size:21 final size:21
Alignment explanation
Indices: 125271--125312 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
125261 ATTCATTTCG
* *
125271 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
125292 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
125313 CAACCCAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.29
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:131350 original size:22 final size:22
Alignment explanation
Indices: 131325--131375 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
131315 CACCACAGCT
*
131325 CGTATAAATGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
*
131347 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
131369 CGTAGAA
1 CGTAGAA
131376 TTATGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.18
Consensus pattern (22 bp):
CGTAGAAATGCACCGAAGTGCC
Found at i:131376 original size:22 final size:22
Alignment explanation
Indices: 131333--131377 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
131323 CTCGTATAAA
131333 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
131355 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
131377 T
1 T
131378 ATGTCCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Done.