Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008777.1 Hibiscus syriacus cultivar Beakdansim tig00111897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60091

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3239--3321
25
3.5
22
81
12
87
77
0
1
21
0.84
3239--3321
5
15.4
5
79
18
71
77
0
1
21
0.84
3239--3325
11
7.5
11
78
19
88
77
0
1
21
0.84
3239--3325
6
14.8
6
83
11
101
77
0
1
21
0.84
3526--3564
2
19.5
2
100
0
78
51
0
0
48
1.00
5183--5232
25
2.1
24
85
7
66
62
2
2
34
1.18
5244--5299
22
2.5
22
85
8
69
48
7
3
41
1.48
11567--11978
105
3.9
104
83
4
434
29
26
13
30
1.94
11567--11978
209
2.0
211
80
3
472
29
26
13
30
1.94
15621--16050
105
4.1
105
84
1
468
30
26
12
31
1.92
15618--15998
210
1.8
210
84
1
521
28
25
12
33
1.92
18131--18178
21
2.2
21
80
20
55
43
0
0
56
0.99
18188--18225
2
19.0
2
100
0
76
50
0
0
50
1.00
20801--20867
32
2.1
32
88
0
98
25
5
25
43
1.77
20790--20866
32
2.6
29
76
11
82
24
6
27
41
1.79
20845--20945
38
2.6
38
84
6
132
10
10
33
44
1.75
20922--21005
29
2.8
30
78
7
89
21
10
26
41
1.85
21488--21536
18
2.8
17
75
6
53
28
28
10
32
1.90
23203--23307
55
1.9
55
90
0
165
34
17
19
29
1.94
23637--23690
16
3.4
16
77
10
65
37
1
5
55
1.34
24544--24581
19
2.0
19
89
0
58
39
18
18
23
1.92
24986--25047
2
31.0
2
96
0
115
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25284--25584
125
2.4
125
95
2
530
52
21
4
20
1.65
25625--25652
2
14.0
2
100
0
56
50
0
0
50
1.00
28111--28161
25
2.0
25
96
0
93
27
11
31
29
1.92
31515--31557
17
2.5
17
100
0
86
16
48
23
11
1.78
44558--44608
7
6.4
8
84
15
61
80
0
7
11
0.90
44558--44600
16
2.8
15
86
6
68
81
0
4
13
0.84
45928--46210
156
1.8
154
84
4
390
34
18
24
22
1.96
45762--46210
105
4.4
103
75
15
334
33
18
25
22
1.96
45665--46525
51
16.4
55
76
13
484
31
16
26
25
1.97
46194--46525
108
3.1
109
85
1
452
28
14
28
28
1.95
47200--47242
17
2.5
17
100
0
86
16
48
23
11
1.78
49532--49592
30
2.1
29
84
3
77
37
13
9
39
1.77
49863--49946
37
2.3
37
91
0
132
35
16
2
45
1.61
59655--59694
17
2.4
16
91
4
62
42
2
7
47
1.45
59618--59743
65
1.9
64
82
6
155
42
2
5
50
1.39

Tables:   1

The End!