genome.fa.s8778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008778.1 Hibiscus syriacus cultivar Beakdansim tig00111903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61935

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651--711	30	2.1	29	84	3	77	37	13	9	39	1.77
10899--10939	17	2.4	17	91	0	64	43	2	7	46	1.44
13429--13562	12	10.2	12	70	24	58	51	0	1	47	1.10
13430--13568	15	9.3	15	67	18	94	52	0	1	46	1.09
13524--13560	14	2.9	13	85	14	51	62	0	0	37	0.96
13433--13574	31	4.8	30	71	12	105	52	0	1	45	1.14
13433--13582	60	2.5	59	74	14	146	52	0	2	45	1.17
13521--13705	31	5.8	30	71	20	117	50	3	4	41	1.40
13433--13603	91	1.9	93	82	11	221	50	0	2	45	1.20
13584--13645	14	4.4	14	74	11	54	41	3	8	46	1.49
13552--13740	65	2.9	65	76	16	192	47	4	5	42	1.47
13688--13728	22	2.0	21	86	13	59	48	9	4	36	1.58
13716--13769	21	2.5	21	85	8	65	46	5	5	42	1.50
13801--13884	13	6.8	13	66	17	54	40	10	5	42	1.64
13780--13895	60	1.9	60	96	0	214	41	11	6	41	1.65
13929--13975	21	2.2	21	88	0	76	27	2	21	48	1.61
14041--14081	2	20.5	2	100	0	82	48	0	0	51	1.00
14406--14680	4	69.0	4	99	0	543	49	25	0	25	1.50
14678--14710	2	16.5	2	100	0	66	51	48	0	0	1.00
14718--14926	4	52.2	4	94	0	283	24	49	23	1	1.60
14928--14981	2	27.0	2	100	0	108	50	50	0	0	1.00
15176--15237	19	3.3	19	77	6	72	24	30	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15312--15510	2	100.0	2	64	22	55	44	5	3	47	1.40
15378--15416	13	2.7	15	84	15	64	38	5	7	48	1.54
15387--15425	13	3.0	13	92	0	60	38	7	7	46	1.61
15453--15510	17	3.4	17	79	15	57	44	1	1	51	1.21
15312--15510	13	14.8	13	69	21	55	44	5	3	47	1.40
15564--15610	24	2.0	24	84	12	62	25	4	2	68	1.19
16406--16678	137	2.0	135	96	2	503	32	15	12	39	1.84
21014--21056	18	2.4	18	88	11	70	16	6	0	76	0.99
21003--21247	93	2.6	93	86	11	333	21	6	2	69	1.22
21272--21296	2	12.5	2	100	0	50	48	0	0	52	1.00
21611--21636	4	6.5	4	100	0	52	23	0	0	76	0.78
21694--21723	8	3.6	8	91	8	51	13	0	0	86	0.57
21675--21721	15	3.2	14	87	6	58	17	2	2	78	0.94
25350--25516	64	2.6	64	90	0	253	34	21	15	28	1.94
25453--25933	147	3.3	146	86	3	675	37	20	13	28	1.91
26036--26891	124	6.8	123	79	7	869	33	24	14	27	1.94
26036--26896	372	2.3	371	82	6	989	33	24	14	27	1.94
26670--26891	123	1.8	123	91	0	372	33	24	16	25	1.96
27281--27325	2	23.0	2	90	4	74	46	0	2	51	1.13
28344--28386	18	2.4	18	100	0	86	25	46	13	13	1.81
28651--28776	31	4.2	28	74	18	87	21	5	2	70	1.19
28667--28825	5	30.6	5	69	19	69	21	5	1	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28720--28778	16	3.3	18	71	20	52	20	5	1	72	1.12
28723--28829	39	2.8	39	79	13	105	18	5	0	74	1.06
28713--28812	29	3.3	30	75	19	93	21	5	1	73	1.09
28762--28820	16	3.3	18	80	17	70	20	5	0	74	1.00
28719--28840	23	5.3	23	70	16	67	21	6	0	71	1.14
28834--28867	2	17.5	2	93	6	61	50	0	0	50	1.00
28964--29005	18	2.3	18	87	0	57	14	2	2	80	0.90
29033--29067	12	2.9	12	100	0	70	31	0	0	68	0.90
29033--29067	18	1.9	18	100	0	70	31	0	0	68	0.90
32589--32635	19	2.5	19	86	10	62	44	0	0	55	0.99
34050--34115	3	22.0	3	93	0	114	66	0	1	31	1.01
34429--34988	113	4.9	112	84	3	638	29	18	14	36	1.91
34468--34988	230	2.3	229	86	3	737	29	19	14	37	1.91
35772--36123	83	4.2	83	90	2	560	36	21	13	27	1.92
35718--36123	166	2.4	167	88	5	598	37	22	13	26	1.91
37263--37318	18	3.2	18	82	12	73	0	16	0	83	0.64
37264--37329	23	2.7	24	90	6	98	0	18	0	81	0.68
37264--37329	25	2.7	25	88	11	93	0	18	0	81	0.68
48694--48738	17	2.6	17	89	3	63	44	0	0	55	0.99
50138--50191	3	18.0	3	96	0	99	64	0	1	33	1.04
52395--52444	23	2.2	23	92	0	82	38	8	22	32	1.83
52358--52520	87	1.9	87	96	0	299	40	12	14	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52537--53246	200	3.5	197	80	7	741	30	15	13	39	1.87
54791--55244	251	1.8	252	88	2	709	31	15	14	37	1.89
56548--56598	3	17.0	3	91	0	84	35	31	0	33	1.58
58089--59429	200	6.7	201	93	1	2226	32	16	14	36	1.89
61550--61632	21	4.1	21	78	9	91	16	28	10	43	1.82

Tables:   1

The End!