Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008779.1 Hibiscus syriacus cultivar Beakdansim tig00111904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82390

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1573--1642
8
8.8
8
98
0
131
50
0
25
24
1.50
7119--7155
19
1.9
19
94
0
65
32
29
16
21
1.95
8896--8931
2
18.0
2
100
0
72
50
0
0
50
1.00
9093--9199
24
4.5
24
65
4
63
49
16
10
23
1.76
13572--13607
17
2.1
18
89
5
56
58
2
0
38
1.13
18058--18090
2
16.5
2
100
0
66
48
0
0
51
1.00
24243--24310
27
2.6
25
90
9
102
39
0
2
57
1.14
24252--24299
3
15.0
3
83
12
60
35
0
4
60
1.16
26224--26275
20
2.6
21
76
11
56
26
7
0
65
1.20
26260--26301
14
2.8
16
78
14
52
26
0
0
73
0.83
35198--35253
23
2.5
23
82
2
69
37
14
12
35
1.84
35928--36564
76
8.3
76
96
1
1132
22
19
21
35
1.96
35928--36564
229
2.8
230
96
0
1163
22
19
21
35
1.96
35928--36564
153
4.2
153
96
1
1136
22
19
21
35
1.96
37543--37703
64
2.5
65
86
7
204
33
18
21
26
1.96
39078--39537
149
3.1
149
96
1
839
29
14
20
35
1.93
42881--43041
64
2.5
65
86
7
204
33
18
21
26
1.96
44412--44877
149
3.1
149
96
1
844
28
15
20
35
1.93
44845--44889
23
2.0
23
86
0
63
22
24
26
26
2.00
48213--48239
14
1.9
14
100
0
54
44
14
3
37
1.63
48543--48813
43
6.3
43
83
3
294
28
21
22
28
1.99
48966--49024
21
2.8
21
84
0
73
55
20
5
18
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52903--53061
52
3.1
52
97
0
300
43
15
7
33
1.75
54157--54263
39
2.6
40
74
16
103
29
18
15
35
1.93
56536--56569
15
2.3
15
100
0
68
47
26
0
26
1.53
57285--57339
24
2.3
25
84
6
69
23
14
0
61
1.33
57393--57488
19
5.1
19
87
0
111
29
19
8
42
1.80
60405--60449
3
14.7
3
95
4
81
66
0
0
33
0.92
60825--60887
20
3.2
20
62
20
51
30
15
25
28
1.96
60804--60888
39
2.2
39
95
0
152
31
15
23
29
1.95
62065--62105
15
2.7
16
77
11
50
46
14
19
19
1.84
65232--65256
12
2.1
12
100
0
50
48
0
0
52
1.00
73513--73707
97
2.0
97
100
0
390
22
16
12
48
1.79
81515--81564
24
2.1
24
85
7
66
26
2
12
60
1.43
82034--82071
20
1.9
19
89
5
58
18
7
0
73
1.06

Tables:   1

The End!