Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000878.1 Hibiscus syriacus cultivar Beakdansim tig00001710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62986

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--84
6
7.0
6
83
13
56
2
19
0
78
0.86
25--132
20
5.1
19
72
19
63
6
16
0
76
0.98
44--129
14
5.6
15
73
10
68
5
18
0
75
1.00
42--98
22
2.6
22
76
15
64
5
19
0
75
0.99
25--129
14
7.6
13
71
16
61
6
16
0
77
0.97
50--129
8
10.2
8
70
18
53
6
18
0
75
1.01
47--131
16
5.5
15
77
16
68
5
20
0
74
1.03
6436--6500
23
2.8
23
85
0
94
38
21
18
21
1.93
6574--6635
20
3.0
21
68
13
56
37
22
14
25
1.92
7095--7155
24
2.7
22
70
12
52
26
22
18
32
1.97
10162--10470
85
3.6
84
87
3
399
29
20
17
32
1.96
11945--11975
12
2.6
12
94
0
53
70
9
6
12
1.31
12535--12583
19
2.5
20
73
3
55
2
34
6
57
1.35
23646--23701
23
2.4
23
96
0
103
30
16
14
39
1.88
23860--23944
23
3.7
22
75
7
80
32
20
18
28
1.96
34111--34161
25
1.9
26
84
11
68
54
7
0
37
1.29
34123--34459
37
9.1
37
75
11
246
44
6
4
43
1.51
34123--34391
74
3.6
74
81
6
278
44
6
4
43
1.51
34261--34285
11
2.3
11
100
0
50
44
8
8
40
1.63
34297--34321
12
2.1
12
100
0
50
44
8
8
40
1.63
35087--36149
84
12.9
82
80
7
969
24
20
25
30
1.99
35067--36149
165
6.5
165
85
3
1334
24
20
25
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35123--36149
249
4.1
247
81
5
1158
24
20
24
30
1.99
42431--42680
37
6.8
36
76
13
233
46
7
4
41
1.52
42431--42666
74
3.2
74
82
6
268
46
7
5
40
1.54
42569--42593
11
2.3
11
100
0
50
44
8
8
40
1.63
42605--42629
12
2.1
12
100
0
50
44
8
8
40
1.63
47872--48944
84
12.8
85
80
3
1145
30
23
19
26
1.98
47872--48944
169
6.4
169
82
3
1137
30
23
19
26
1.98
47872--48934
503
2.1
502
90
1
1639
30
23
20
26
1.98
52110--52722
253
2.4
257
90
4
970
40
20
12
26
1.88
53230--53278
2
25.0
2
95
4
91
48
0
0
51
1.00
56090--56184
34
2.6
36
81
9
113
38
13
15
31
1.87
56832--56865
16
2.1
16
88
0
50
32
5
0
61
1.20
56845--56895
21
2.4
21
77
9
59
29
3
1
64
1.22
56837--56895
24
2.6
22
79
15
59
30
5
1
62
1.26
60185--60237
9
5.7
9
78
8
61
84
3
9
1
0.81
60185--60237
19
2.7
20
85
5
72
84
3
9
1
0.81
60185--60236
22
2.4
21
87
3
68
86
3
7
1
0.76
60176--60246
19
3.8
19
71
14
58
78
5
14
1
0.99
60839--60884
21
2.2
21
96
0
83
36
30
10
21
1.88
61742--61852
36
3.0
37
88
5
161
26
23
12
37
1.90
61760--62012
102
2.5
103
90
0
400
29
20
12
37
1.90
61938--62082
75
1.9
75
98
0
281
30
19
12
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61819--62291
177
2.8
167
86
6
685
31
19
12
36
1.89
62098--62256
65
2.4
65
94
0
282
31
20
11
36
1.89
62363--62434
37
1.9
37
82
0
90
26
22
11
40
1.87

Tables:   1

The End!