genome.fa.s8782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008782.1 Hibiscus syriacus cultivar Beakdansim tig00111913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232071

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3804--3920	59	2.0	59	91	0	189	26	17	22	33	1.96
8200--8320	60	2.0	59	85	1	161	24	16	23	35	1.95
13088--13184	51	1.9	50	81	10	117	55	11	14	18	1.68
14476--14720	135	1.8	135	84	0	337	22	14	25	36	1.93
15273--15434	66	2.4	67	84	1	218	38	15	20	25	1.92
17318--17375	24	2.5	24	82	2	64	44	1	5	48	1.35
17318--17374	23	2.4	23	79	2	60	45	1	5	47	1.35
18217--18278	8	7.6	8	74	15	56	0	20	0	79	0.74
18232--18277	11	4.4	10	81	10	56	0	17	0	82	0.67
18217--18278	20	3.3	19	82	10	74	0	20	0	79	0.74
18222--18276	13	4.2	13	79	9	67	0	20	0	80	0.72
19717--19748	16	1.9	17	93	6	57	21	28	12	37	1.90
19765--19810	23	2.0	23	91	0	74	15	28	19	36	1.92
23884--23926	2	21.5	2	100	0	86	48	0	0	51	1.00
24223--24268	21	2.2	20	85	11	58	39	4	6	50	1.48
24778--24905	64	2.0	63	81	4	150	32	18	21	27	1.97
29707--29996	43	6.7	43	86	2	345	26	21	19	32	1.97
29707--29996	85	3.4	86	87	3	372	26	21	19	32	1.97
30170--30243	34	2.3	33	86	6	98	37	20	14	27	1.92
30181--30260	34	2.3	34	91	2	124	33	16	15	35	1.90
31119--31287	28	6.0	28	80	6	171	31	1	18	47	1.59
31130--31287	57	2.8	57	76	7	160	32	1	18	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31984--32054	24	3.0	24	82	0	97	29	14	15	40	1.86
38121--38145	5	5.0	5	100	0	50	20	60	20	0	1.37
38223--38311	28	3.2	26	78	7	70	32	3	12	51	1.56
38297--38346	17	3.2	17	68	26	56	40	0	18	42	1.50
38160--38364	29	7.2	29	81	7	163	33	2	17	46	1.63
44655--44697	11	3.7	11	84	9	59	88	11	0	0	0.52
44701--44725	9	2.8	9	100	0	50	64	0	0	36	0.94
47521--47579	21	2.8	22	82	10	70	0	6	11	81	0.87
47514--47577	30	2.1	30	88	5	94	0	7	12	79	0.92
47520--47567	20	2.3	21	82	3	62	0	10	10	79	0.95
55217--55256	17	2.5	16	92	8	64	40	2	35	22	1.68
56789--56838	20	2.5	20	100	0	100	26	22	26	26	2.00
56977--57025	19	2.6	19	93	0	80	28	22	30	18	1.97
57455--57761	157	2.0	157	90	0	488	34	11	25	28	1.91
57455--57774	79	4.1	79	89	3	475	35	11	25	27	1.91
63972--64151	95	1.9	96	87	3	265	35	17	21	25	1.95
64583--64823	79	3.1	79	92	0	385	36	9	24	29	1.88
66398--66430	12	2.8	12	90	0	57	42	33	15	9	1.78
67240--67298	25	2.3	25	80	16	59	54	1	1	42	1.20
68850--68885	3	12.0	3	100	0	72	66	0	0	33	0.92
68921--68951	15	2.0	16	93	6	55	6	19	12	61	1.53
69036--69880	116	7.3	116	91	0	1300	27	20	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69506--69568	21	2.9	23	68	15	62	17	23	23	34	1.96
73370--73416	13	3.5	13	78	18	51	0	21	0	78	0.75
73374--73416	15	2.9	16	80	19	58	0	23	0	76	0.78
73378--73416	13	2.8	14	84	11	53	0	23	0	76	0.78
74869--74905	19	2.0	18	89	5	56	32	21	0	45	1.52
78733--78781	25	2.1	23	82	17	57	51	0	0	48	1.00
81789--81814	5	5.2	5	100	0	52	38	0	0	61	0.96
81824--81861	2	19.0	2	100	0	76	50	0	0	50	1.00
94292--94530	95	2.5	94	84	5	286	33	15	25	25	1.95
94477--94530	22	2.7	20	83	13	74	29	12	31	25	1.93
94480--94523	22	2.0	22	95	0	79	31	11	29	27	1.91
94958--95257	45	6.7	45	83	4	324	40	9	21	29	1.85
94956--95257	134	2.2	134	85	5	387	40	9	21	29	1.85
101334--101382	20	2.6	19	83	6	64	30	14	32	22	1.93
101772--102070	45	6.7	45	82	3	347	38	11	21	28	1.88
103299--103353	23	2.6	20	78	15	65	21	29	23	25	1.99
111594--111642	25	1.9	25	87	4	71	42	12	6	38	1.67
112210--112277	24	2.8	24	82	4	84	54	16	8	20	1.68
113701--113732	12	2.7	12	95	0	55	37	15	21	25	1.93
114860--114958	44	2.2	45	94	3	173	42	7	22	28	1.79
115220--115248	14	2.0	15	93	6	51	10	0	27	62	1.28
116271--116315	19	2.4	19	96	0	81	37	26	15	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118661--118699	17	2.3	17	90	0	60	35	15	7	41	1.76
120033--120101	21	3.2	21	74	10	52	37	14	20	27	1.91
122915--123058	66	2.1	66	78	8	148	23	12	35	28	1.91
122895--123168	141	1.9	141	81	7	324	23	10	36	29	1.89
124137--124178	17	2.5	17	77	11	50	59	0	11	28	1.33
124736--124778	20	2.3	19	88	8	61	69	4	6	18	1.29
130322--130371	23	2.3	23	86	6	68	66	6	10	18	1.42
130860--130907	24	2.0	24	95	0	87	37	16	18	27	1.92
136754--136802	24	2.0	24	84	0	62	40	24	12	22	1.88
138567--138599	17	1.9	17	93	0	57	57	12	0	30	1.35
146442--146496	9	6.0	9	91	4	83	80	0	7	12	0.91
159540--159619	21	3.9	21	88	6	128	21	6	21	51	1.69
159540--159618	40	2.0	40	94	0	140	21	6	21	50	1.70
159662--159725	27	2.4	27	94	0	110	39	0	23	37	1.55
159791--160059	43	6.4	42	80	7	260	24	23	19	32	1.98
159813--160062	84	3.0	85	80	8	269	24	24	19	32	1.98
163809--163838	13	2.3	13	94	0	51	13	36	6	43	1.70
166545--166595	12	4.1	12	76	18	59	15	7	9	66	1.43
180497--180556	30	2.1	29	87	9	88	58	6	0	35	1.24
182451--182546	34	2.8	34	80	3	104	33	22	14	29	1.94
190373--190497	66	1.9	66	81	3	153	20	16	22	40	1.92
198405--198445	20	2.0	20	86	9	57	68	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200759--200804	20	2.3	19	85	14	58	50	8	15	26	1.73
213546--213582	10	3.9	10	82	13	51	16	0	5	78	0.93
213545--213586	18	2.4	18	92	4	68	14	0	4	80	0.86
214334--214371	2	19.0	2	100	0	76	50	0	0	50	1.00
222889--223009	59	2.1	59	90	0	188	26	16	23	33	1.95
227204--227325	60	2.1	59	88	1	181	26	17	22	33	1.96

Tables:   1

The End!