Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008783.1 Hibiscus syriacus cultivar Beakdansim tig00111914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61965

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
633--854
95
2.3
95
86
3
288
33
15
25
26
1.95
784--854
19
3.5
20
82
14
76
32
12
30
23
1.92
804--847
22
2.0
22
95
0
79
31
11
29
27
1.91
1275--1565
44
6.7
45
81
7
291
38
9
21
30
1.86
1275--1526
84
2.9
86
83
8
307
38
10
22
28
1.88
1275--1523
42
5.8
42
79
8
234
37
10
22
29
1.88
1273--1548
126
2.1
128
82
7
326
38
10
21
30
1.87
7565--7822
95
2.7
93
84
3
327
32
15
24
26
1.96
8226--8526
45
6.7
45
81
4
324
37
11
21
29
1.88
13037--13074
6
6.3
6
82
11
51
81
2
15
0
0.80
13098--13140
5
9.0
5
80
19
56
79
0
20
0
0.74
13317--13352
14
2.6
15
83
16
51
16
38
0
44
1.48
17689--18030
44
7.7
44
89
3
490
40
7
20
32
1.80
17750--17824
20
3.6
19
70
26
62
42
4
20
33
1.70
17689--18030
133
2.6
133
91
2
553
40
7
20
32
1.80
17689--18030
89
3.8
88
88
3
490
40
7
20
32
1.80
17883--17950
20
3.2
20
67
28
59
41
4
20
33
1.72
18442--18493
26
2.0
26
92
0
86
21
21
17
40
1.91
20774--20922
47
3.2
47
93
1
239
33
20
6
39
1.78
23374--23411
12
3.3
12
78
14
53
0
31
13
55
1.38
23891--23945
3
18.7
3
96
3
103
65
0
0
34
0.93
24265--24940
113
6.0
113
94
1
1104
29
18
14
37
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26577--26621
18
2.6
17
89
6
65
55
6
6
31
1.52
26953--27010
1
58.0
1
75
0
53
0
12
0
87
0.53
26952--27010
10
5.8
10
81
15
68
0
13
0
86
0.57
26955--27009
14
3.9
14
88
6
85
0
12
0
87
0.55
26952--27013
25
2.6
25
82
14
85
0
14
0
85
0.60
26954--27009
28
2.0
29
92
3
96
0
12
0
87
0.54
39284--39316
16
2.0
17
94
5
59
0
15
6
78
0.93
39798--39826
11
2.5
12
88
11
51
37
0
0
62
0.96
39825--39871
3
15.7
3
95
0
85
63
0
2
34
1.06
40898--40962
29
2.3
28
78
7
69
32
18
10
38
1.85
41654--41699
22
2.0
23
83
4
58
47
0
17
34
1.48
43418--43487
31
2.4
29
79
11
81
34
21
20
24
1.97
43745--43809
2
33.5
2
90
6
107
49
0
0
50
1.00
43745--43809
29
2.2
29
97
0
121
49
0
0
50
1.00
44520--44574
23
2.6
20
84
15
83
20
27
25
27
1.99
44530--44573
23
1.9
23
100
0
88
20
29
22
27
1.99
46210--46261
19
2.6
21
90
6
81
46
7
13
32
1.72
49479--49530
24
2.1
25
86
10
72
7
17
3
71
1.25
49497--49549
19
2.9
18
83
10
63
3
16
5
73
1.17
49479--49530
25
2.1
24
86
10
70
7
17
3
71
1.25
50258--50291
16
2.1
17
88
5
52
47
5
8
38
1.59
53766--53816
15
3.4
15
75
20
61
60
0
25
13
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53754--53833
30
2.7
30
94
0
133
61
0
23
15
1.34
53755--53808
18
3.3
18
69
28
57
61
0
24
14
1.34

Tables:   1

The End!