genome.fa.s8784.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008784.1 Hibiscus syriacus cultivar Beakdansim tig00111915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122791

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7039--7381	133	2.6	133	84	3	440	30	18	19	31	1.96
8222--8260	20	2.1	19	85	9	53	64	2	0	33	1.08
9115--9139	12	2.1	12	100	0	50	16	36	0	48	1.46
29807--29961	15	10.1	15	81	4	175	47	12	14	24	1.80
29796--30067	15	16.5	17	68	21	145	47	13	15	23	1.80
29810--30051	30	8.0	30	78	13	246	47	13	15	24	1.81
29921--30094	90	1.9	90	97	2	332	47	12	16	24	1.81
30012--30090	15	4.9	15	73	14	68	48	11	16	24	1.79
32366--32409	20	2.3	19	81	11	54	34	4	0	61	1.16
32479--32504	12	2.2	12	100	0	52	7	46	19	26	1.77
39623--39846	84	2.7	84	81	4	247	32	23	24	20	1.98
42855--42932	4	19.5	4	97	0	147	50	23	0	26	1.50
43062--43095	12	2.7	13	90	9	61	20	14	0	64	1.28
43967--44002	15	2.4	15	95	0	63	30	8	19	41	1.81
44245--44269	2	12.5	2	100	0	50	52	0	0	48	1.00
49983--50032	24	2.1	24	85	7	66	26	2	12	60	1.43
50507--50540	17	2.1	16	88	5	50	14	8	0	76	1.01
53186--53225	19	2.0	20	85	4	55	65	2	12	20	1.38
53638--53689	19	2.6	21	90	6	81	46	5	13	34	1.67
57775--57826	19	2.6	21	90	6	81	46	5	13	34	1.67
61251--61808	81	7.0	81	86	4	720	30	20	11	37	1.88
61270--61828	235	2.3	239	85	3	734	29	20	11	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61778--62033	68	3.8	67	85	6	302	29	24	12	33	1.93
61778--62033	136	1.9	136	86	4	365	29	24	12	33	1.93
62773--62817	20	2.1	21	88	8	65	28	20	15	35	1.93
66270--66334	31	2.1	31	91	0	103	30	27	18	23	1.97
69209--69817	81	7.5	81	86	2	767	29	20	11	38	1.88
69763--70093	68	4.9	68	90	0	493	27	25	14	32	1.95
70771--70950	94	1.9	95	85	3	247	23	19	18	38	1.93
73748--73816	15	4.5	15	71	8	59	23	2	10	63	1.39
75231--75329	24	4.2	24	84	2	65	39	19	16	25	1.91
75248--75322	24	3.2	23	84	5	105	36	20	18	25	1.95
76910--76945	17	2.1	18	89	5	56	33	13	5	47	1.67
83329--83397	35	2.0	35	82	5	86	44	21	0	33	1.53
83567--83854	147	2.0	147	88	4	433	36	6	9	47	1.60
84342--84368	6	4.5	6	100	0	54	0	0	62	37	0.95
84367--84445	35	2.3	35	86	4	106	31	2	24	41	1.68
87354--87394	3	13.7	3	100	0	82	31	0	0	68	0.90
91330--91374	3	15.3	3	81	4	56	68	2	2	26	1.12
91559--91792	43	5.2	43	68	11	153	23	19	29	27	1.98
91575--91790	90	2.3	92	89	6	314	24	18	29	26	1.98
91621--91754	46	3.0	46	70	10	141	23	19	29	27	1.98
108266--108455	103	1.9	100	84	8	258	21	11	20	47	1.80
111888--112002	56	2.1	56	100	0	230	22	26	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112087--112148	25	2.4	26	89	5	99	37	25	16	20	1.93
112278--112404	23	5.5	23	88	0	182	27	24	22	25	2.00
112306--112391	12	7.4	12	72	17	74	25	27	20	25	1.99
113545--113633	14	6.4	14	77	10	74	24	1	29	44	1.61
113567--113605	7	5.6	7	84	0	51	23	2	25	48	1.63
113542--113619	21	3.7	21	77	6	77	25	1	29	43	1.63
113600--113640	14	2.9	14	92	7	66	26	0	29	43	1.55
116615--116669	19	2.8	20	78	15	69	34	5	25	34	1.79
116626--116667	19	2.2	19	95	0	75	38	4	26	30	1.77
116982--117038	24	2.4	24	84	0	78	7	22	49	21	1.73
116997--117040	12	3.7	12	75	0	52	4	27	50	18	1.66

Tables:   1

The End!