Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008786.1 Hibiscus syriacus cultivar Beakdansim tig00111920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 306639
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:10432 original size:18 final size:18
Alignment explanation
Indices: 10409--10445 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10399 TGGTCCTTCT
*
10409 CTCGTCGAAACCCATTGC
1 CTCGTCGAAACCCAATGC
10427 CTCGTCGAAACCCAATGC
1 CTCGTCGAAACCCAATGC
10445 C
1 C
10446 CATAAACCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.41, G:0.16, T:0.19
Consensus pattern (18 bp):
CTCGTCGAAACCCAATGC
Found at i:16529 original size:30 final size:30
Alignment explanation
Indices: 16493--16570 Score: 156
Period size: 30 Copynumber: 2.6 Consensus size: 30
16483 AGAAATGTGT
16493 TGTGGCTGCTGTTGCTGTGACAGTGCATGC
1 TGTGGCTGCTGTTGCTGTGACAGTGCATGC
16523 TGTGGCTGCTGTTGCTGTGACAGTGCATGC
1 TGTGGCTGCTGTTGCTGTGACAGTGCATGC
16553 TGTGGCTGCTGTTGCTGT
1 TGTGGCTGCTGTTGCTGT
16571 TGGTTTGTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.08, C:0.19, G:0.37, T:0.36
Consensus pattern (30 bp):
TGTGGCTGCTGTTGCTGTGACAGTGCATGC
Found at i:16568 original size:15 final size:15
Alignment explanation
Indices: 16493--16570 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
16483 AGAAATGTGT
16493 TGTGGCTGCTGTTGC
1 TGTGGCTGCTGTTGC
* * *
16508 TGTGACAG-TGCATGC
1 TGTGGCTGCTG-TTGC
16523 TGTGGCTGCTGTTGC
1 TGTGGCTGCTGTTGC
* * *
16538 TGTGACAG-TGCATGC
1 TGTGGCTGCTG-TTGC
16553 TGTGGCTGCTGTTGC
1 TGTGGCTGCTGTTGC
16568 TGT
1 TGT
16571 TGGTTTGTAG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 4 0.09
15 39 0.83
16 4 0.09
ACGTcount: A:0.08, C:0.19, G:0.37, T:0.36
Consensus pattern (15 bp):
TGTGGCTGCTGTTGC
Found at i:23154 original size:21 final size:21
Alignment explanation
Indices: 23130--23184 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
23120 ATATATTTAT
*
23130 TAAAAATATTATTTTATTCAA
1 TAAAAATATTATTTAATTCAA
*
23151 TAAAAATATATATTTAATTGAA
1 TAAAAATAT-TATTTAATTCAA
23173 -AGAAAATATTAT
1 TA-AAAATATTAT
23185 ATAGAAGGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (21 bp):
TAAAAATATTATTTAATTCAA
Found at i:23178 original size:23 final size:22
Alignment explanation
Indices: 23131--23187 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 22
23121 TATATTTATT
* * *
23131 AAAAATAT-TATTTTATTCAAT
1 AAAAATATATATTTAATTAAAG
23152 AAAAATATATATTTAATTGAAAG
1 AAAAATATATATTTAATT-AAAG
23175 AAAATATTATATA
1 AAAA-A-TATATA
23188 GAAGGGTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 8 0.28
22 8 0.28
23 6 0.21
24 1 0.03
25 6 0.21
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (22 bp):
AAAAATATATATTTAATTAAAG
Found at i:23394 original size:2 final size:2
Alignment explanation
Indices: 23387--23417 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23377 GTTCAAGTCC
23387 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23418 CAATTAGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:30283 original size:22 final size:23
Alignment explanation
Indices: 30236--30289 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
30226 TATAAGTTAA
*
30236 AAATAATATTATTTCAAACAAAT
1 AAATAATATGATTTCAAACAAAT
*
30259 AAATAATATGATTTTAAA-AAAT
1 AAATAATATGATTTCAAACAAAT
*
30281 AAACAATAT
1 AAATAATAT
30290 TTTCATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (23 bp):
AAATAATATGATTTCAAACAAAT
Found at i:30333 original size:24 final size:23
Alignment explanation
Indices: 30279--30338 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
30269 ATTTTAAAAA
* *
30279 ATAAACAATATTTTCATAATATT
1 ATAAATAATATTTTCAGAATATT
*
30302 ATAAATAATATTTTTAGAATGATT
1 ATAAATAATATTTTCAGAAT-ATT
30326 -TAATATAA-ATTTT
1 ATAA-ATAATATTTT
30339 ATTAATACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 25 0.78
24 7 0.22
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (23 bp):
ATAAATAATATTTTCAGAATATT
Found at i:31911 original size:1 final size:1
Alignment explanation
Indices: 31905--31929 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
31895 ATTGCTACAG
31905 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
31930 ATGTAGGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:38441 original size:182 final size:180
Alignment explanation
Indices: 38112--39997 Score: 2376
Period size: 182 Copynumber: 10.4 Consensus size: 180
38102 ATCCATAGGA
* * **
38112 AAAACAGGTCTAAAAAATGACAAAATAGGTAAAGCACTACCGGATATGTTGAAAGTGTCGATAAT
1 AAAACCGGTCT-AAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAAT
*
38177 TTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAACGTGTCG
65 TTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA-GTGTCG
***
38242 ACACTTTACGCAAATGTATCGATCCATAACAATATAACAGCCTAAAATATGAC
129 ACACTTTAAAAAAATGTATCGATCCATAACAATATAACAG-CTAAAATATGAC
* ** * *
38295 AAAACCGGTCTCAAAATGACAAAACAGGTAAATAACTACCAAATATGTTGAAAGGGTCGATACTT
1 AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
* *
38360 TAATATAAGTATCGACA-TTTTTGATATTTAAAAGAGAAGAAGTTATAGCGCCTATAAATTGTCG
66 TAATATAAGTATCGACACTTTCTGA-ATTTAAAAGAGAAGAAGTTATAGCGCCTA-AAAGTGTCG
* * * * * *
38424 ATATTTTTAAAAAATGTATCGATTCATAACAATATAACAGGT-AAATAGGAC
129 ACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCTAAAATATGAC
* * *
38475 AAAACAGGTCTAAAAAATGACAAAATC-GGTAAAATGA-TA-CGGATATATTGAAAGTGTCGATA
1 AAAACCGGTCT-AAAAATGACAAAA-CAGGT-AAATAACTACCGGATATGTTGAAAGTGTCGATA
* *
38537 ATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTTTAGCGCCTAAAATATGT
63 ATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA-GTGT
* * *
38602 CGACACTTTAAAAAAATATATCGATCCATAACAATATAACAACCTAAAATATAAC
127 CGACACTTTAAAAAAATGTATCGATCCATAACAATATAAC-AGCTAAAATATGAC
* * *
38657 AAAACCAGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTT
1 AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
*
38722 TAATATAAGTATCGACACTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCG
66 TAATATAAGTATCGACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTA-AAAGTGTCG
* *
38786 ATACTTTAAAAAAATGTATCGATCCATAACAATATAACAAG-TAAAAATAGGAC
129 ACACTTTAAAAAAATGTATCGATCCATAACAATATAAC-AGCT-AAAATATGAC
* *
38839 AAAACAGGTCTAAAAATGACAAAATC-GGT-AA-AACGATACCGGATATATTGAAAGTGTCGATA
1 AAAACCGGTCTAAAAATGACAAAA-CAGGTAAATAAC--TACCGGATATGTTGAAAGTGTCGATA
* *
38901 ATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAATTATAGCGTCTAAAATGTGT
63 ATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA-GTGT
*
38966 CGACACTTTAAAAAAATGTATCGATCCATAACAATATAACATTCTAAAATATGAC
127 CGACACTTTAAAAAAATGTATCGATCCATAACAATATAACA-GCTAAAATATGAC
* * * *
39021 AAAACCGGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTAAAAGTGTCGATACTT
1 AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
* * ** * *
39086 TAATATAAATATCGACACTTT-TAGAATTT--AATAG-AGAAGTTATAATGCCTATAAAGTATTG
66 TAATATAAGTATCGACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTA-AAAGTGTCG
* * * * *
39147 ATACTTTTAAAAAATATATCGATCCATAACAATATAACAGGTAAAAATAGGAC
129 ACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCT-AAAATATGAC
* * * * *
39200 AAAACAGGTCTAAAAAATGACAAAATC-GGT-AA-AACGATATCGGATATATTAAAAGTGTTGAT
1 AAAACCGGTCT-AAAAATGACAAAA-CAGGTAAATAAC--TACCGGATATGTTGAAAGTGTCGAT
39262 AATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAACGTG
62 AATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA-GTG
* * *
39327 TCGACACTTT-AAAAAATATATCGATCCATAACAAAATAACAACCTAAAATATGAC
126 TCGACACTTTAAAAAAATGTATCGATCCATAACAATATAAC-AGCTAAAATATGAC
* * * * * *
39382 AAAACCGGTCTCAAAATGACAAAAGAGATAAATAACTACCGGATATGTTGAAAATGTTGATACTT
1 AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
39447 TAATATAAGTATCGACACTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCG
66 TAATATAAGTATCGACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTA-AAAGTGTCG
* * *
39511 ATACTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATAGGAC
129 ACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCT-AAAATATGAC
* *** *
39564 AAAACCGGTCTAAAAATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTAGATAATT
1 AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
39629 TAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAACGTGTCGA
66 TAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA-GTGTCGA
*** * *
39694 CACTTTATGCAAATGTATCGATACATAACAATATAACATCCTAAAATATGAC
130 CACTTTAAAAAAATGTATCGATCCATAACAATATAACA-GCTAAAATATGAC
* ** *
39746 AAAACCGGTCTCAAAATGACAAAACAAATAAATAACTACCGGATATGTTGAAAGTGTCGATACTT
1 AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
* **
39811 TAATATAAGTATCGATACTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCTTCTATAAAGTGTCG
66 TAATATAAGTATCGACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTA-AAAGTGTCG
* * *
39875 ATACTTTAAAAAAATGTATCGATCCATAACAATAAAACAGGTAAAA-ATAGAC
129 ACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCTAAAATAT-GAC
* * * *** * *
39927 AAAACAGGTCTAAAAAATGACAAAACCGATAAAGCGCTACTGGATATGTTG-AAGATGTCGATAT
1 AAAACCGGTCT-AAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAG-TGTCGATAA
39991 TTTAATA
64 TTTAATA
39998 AGTACGCGTA
Statistics
Matches: 1484, Mismatches: 166, Indels: 107
0.84 0.09 0.06
Matches are distributed among these distances:
178 4 0.00
179 77 0.05
180 206 0.14
181 190 0.13
182 948 0.64
183 56 0.04
184 3 0.00
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.27
Consensus pattern (180 bp):
AAAACCGGTCTAAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATAATT
TAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAGTGTCGAC
ACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCTAAAATATGAC
Found at i:39016 original size:364 final size:365
Alignment explanation
Indices: 38106--39997 Score: 2993
Period size: 364 Copynumber: 5.2 Consensus size: 365
38096 GTATCGATCC
* * *
38106 ATAGGA-AAAACAGGTCTAAAAAATGACAAAATAGGTAAAGC-ACTACCGGATATGTTGAAAGTG
1 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGA-TACCGGATATATTGAAAGTG
*
38169 TCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAA
65 TCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAA
*** *
38234 ACGTGTCGACACTTTACGCAAATGTATCGATCCATAACAATATAACAGCCTAAAATATGACAAAA
130 ACGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAACCTAAAATATGACAAAA
** *
38299 CCGGTCTCAAAATGACAAAACAGGTAAATAACTACCAAATATGTTGAAAGGGTCGATACTTTAAT
195 CCGGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAAT
* * *
38364 ATAAGTATCGACA-TTTTTGATATTTAAAAGAGAAGAAGTTATAGCGCCTATAAATTGTCGATAT
260 ATAAGTATCGACACTTTTGGA-ATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATAC
* *
38428 TTTTAAAAAATGTATCGATTCATAACAATATAACAGGT--AA
324 TTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
*
38468 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAATGATA-CGGATATATTGAAAGTGT
1 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGT
*
38532 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTTTAGCGCCTAAAA
66 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
** * *
38597 TATGTCGACACTTTAAAAAAATATATCGATCCATAACAATATAACAACCTAAAATATAACAAAAC
131 CGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAACCTAAAATATGACAAAAC
*
38662 CAGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
196 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
*
38727 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTT
261 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTT
*
38792 TAAAAAAATGTATCGATCCATAACAATATAACAAGTAAAA
326 TAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
38832 ATAGGACAAAACAGGTCT-AAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGT
1 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGT
* *
38896 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAATTATAGCGTCTAAAA
66 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
* **
38961 TGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACATTCTAAAATATGACAAAAC
131 CGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAACCTAAAATATGACAAAAC
* *
39026 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTAAAAGTGTCGATACTTTAATA
196 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
* * * ** * *
39091 TAAATATCGACACTTTTAGAATTT--AATAG-AGAAGTTATAATGCCTATAAAGTATTGATACTT
261 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTT
* *
39153 TTAAAAAATATATCGATCCATAACAATATAACAGGTAAAA
326 TAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
* *
39193 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATATCGGATATATTAAAAGTGT
1 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGT
*
39258 TGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
66 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
* *
39323 CGTGTCGACACTTT-AAAAAATATATCGATCCATAACAAAATAACAACCTAAAATATGACAAAAC
131 CGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAACCTAAAATATGACAAAAC
* * * *
39387 CGGTCTCAAAATGACAAAAGAGATAAATAACTACCGGATATGTTGAAAATGTTGATACTTTAATA
196 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
39452 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTT
261 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTT
39517 TAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
326 TAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
* * * * *
39557 ATAGGACAAAACCGGTCT-AAAAATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGT
1 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGT
*
39621 AGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
66 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
*** * *
39686 CGTGTCGACACTTTATGCAAATGTATCGATACATAACAATATAACATCCTAAAATATGACAAAAC
131 CGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAACCTAAAATATGACAAAAC
**
39751 CGGTCTCAAAATGACAAAACAAATAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
196 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
* **
39816 TAAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCTTCTATAAAGTGTCGATACTT
261 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTT
*
39881 TAAAAAAATGTATCGATCCATAACAATAAAACAGGTAAAA
326 TAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
* * * * * *
39921 ATA-GACAAAACAGGTCTAAAAAATGACAAAACCGATAAAGCGCTACTGGATATGTTG-AAGATG
1 ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAG-TG
*
39984 TCGATATTTTAATA
65 TCGATAATTTAATA
39998 AGTACGCGTA
Statistics
Matches: 1416, Mismatches: 101, Indels: 24
0.92 0.07 0.02
Matches are distributed among these distances:
361 210 0.15
362 414 0.29
363 204 0.14
364 588 0.42
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.27
Consensus pattern (365 bp):
ATAGGACAAAACAGGTCTAAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGT
CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
CGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAACCTAAAATATGACAAAAC
CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATA
TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTT
TAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAA
Found at i:39942 original size:21 final size:19
Alignment explanation
Indices: 39908--39952 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
39898 CCATAACAAT
39908 AAAACAGGT-AAAAATAGAC
1 AAAACAGGTAAAAAAT-GAC
39927 AAAACAGGTCTAAAAAATGAC
1 AAAACAGG--TAAAAAATGAC
39948 AAAAC
1 AAAAC
39953 CGATAAAGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.35
21 9 0.39
22 6 0.26
ACGTcount: A:0.62, C:0.13, G:0.13, T:0.11
Consensus pattern (19 bp):
AAAACAGGTAAAAAATGAC
Found at i:40001 original size:725 final size:727
Alignment explanation
Indices: 38106--39997 Score: 3079
Period size: 725 Copynumber: 2.6 Consensus size: 727
38096 GTATCGATCC
* *
38106 ATAGGA-AAAACAGGTCTAAAAAATGACAAAATAGGTAAAGCACTACCGGATATGTTGAAAGTGT
1 ATAGGACAAAACAGGTCT-AAAAATGACAAAATCGGTAAAGCGCTACCGGATATGTTGAAAGTGT
*
38170 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAA
65 CGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA
* *
38235 CGTGTCGACACTTTACGCAAATGTATCGATCCATAACAATATAACAGCCTAAAATATGACAAAAC
130 CGTGTCGACACTTTAAGCAAATGTATCGATCCATAACAATATAACATCCTAAAATATGACAAAAC
* *
38300 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCAAATATGTTGAAAGGGTCGATACTTTAATA
195 CGGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTGAAAGTGTCGATACTTTAATA
* * *
38365 TAAGTATCGACA-TTTTTGATATTTAAAAGAGAAGAAGTTATAGCGCCTATAAATTGTCGATATT
260 TAAGTATCGACACTTTTAGA-ATTTAAAAGAGAAGAAGTTATA--GCCTATAAAGTGTCGATACT
*
38429 TTTAAAAAATGTATCGATTCATAACAATATAACAGGT--AAATAGGACAAAACAGGTCTAAAAAA
322 TTTAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATAGGACAAAACAGGTCTAAAAAA
*
38492 TGACAAAATCGGTAAAATGATAC-GGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAC
387 TGACAAAATCGGTAAAACGATACTGGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAC
* *
38556 ACTTTCTGAATTTAAAAGAGAAGAAGTTTTAGCGCCTAAAATATGTCGACACTTTAAAAAAATAT
452 ACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAACATGTCGACACTTTAAAAAAATAT
* *
38621 ATCGATCCATAACAATATAACAACCTAAAATATAACAAAACCAGTCTCAAAATGACAAAACAGGT
517 ATCGATCCATAACAAAATAACAACCTAAAATATAACAAAACCAGTCTCAAAATGACAAAACAGAT
*
38686 AAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTT
582 AAATAACTACCGGATATGTTGAAAATGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTT
38751 AAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAAC
647 AAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAAC
38816 AATATAACAAGTAAAA
712 AATATAACAAGTAAAA
* * *
38832 ATAGGACAAAACAGGTCTAAAAATGACAAAATCGGTAAAACGATACCGGATATATTGAAAGTGTC
1 ATAGGACAAAACAGGTCTAAAAATGACAAAATCGGTAAAGCGCTACCGGATATGTTGAAAGTGTC
* * *
38897 GATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAATTATAGCGTCTAAAAT
66 GATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAC
** *
38962 GTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACATTCTAAAATATGACAAAACC
131 GTGTCGACACTTTAAGCAAATGTATCGATCCATAACAATATAACATCCTAAAATATGACAAAACC
*
39027 GGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTAAAAGTGTCGATACTTTAATAT
196 GGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTGAAAGTGTCGATACTTTAATAT
* * * *
39092 AAATATCGACACTTTTAGAATTT--AATAG-AGAAGTTATAATGCCTATAAAGTATTGATACTTT
261 AAGTATCGACACTTTTAGAATTTAAAAGAGAAGAAGTTAT-A-GCCTATAAAGTGTCGATACTTT
*
39154 TAAAAAATATATCGATCCATAACAATATAACAGGTAAAAATAGGACAAAACAGGTCTAAAAAATG
324 TAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATAGGACAAAACAGGTCTAAAAAATG
* *
39219 ACAAAATCGGTAAAACGATA-TCGGATATATTAAAAGTGTTGATAATTTAATATAAGTATCGACA
389 ACAAAATCGGTAAAACGATACT-GGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGACA
*
39283 CTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAACGTGTCGACACTTT-AAAAAATATA
453 CTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAACATGTCGACACTTTAAAAAAATATA
* * *
39347 TCGATCCATAACAAAATAACAACCTAAAATATGACAAAACCGGTCTCAAAATGACAAAAGAGATA
518 TCGATCCATAACAAAATAACAACCTAAAATATAACAAAACCAGTCTCAAAATGACAAAACAGATA
*
39412 AATAACTACCGGATATGTTGAAAATGTTGATACTTTAATATAAGTATCGACACTTTTGGAATTTA
583 AATAACTACCGGATATGTTGAAAATGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTA
*
39477 AAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACA
648 AAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACA
*
39542 ATATAACAGGTAAAA
713 ATATAACAAGTAAAA
* * *
39557 ATAGGACAAAACCGGTCTAAAAATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTA
1 ATAGGACAAAACAGGTCTAAAAATGACAAAATCGGTAAAGCGCTACCGGATATGTTGAAAGTGTC
39622 GATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAC
66 GATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAC
* *
39687 GTGTCGACACTTTATGCAAATGTATCGATACATAACAATATAACATCCTAAAATATGACAAAACC
131 GTGTCGACACTTTAAGCAAATGTATCGATCCATAACAATATAACATCCTAAAATATGACAAAACC
** *
39752 GGTCTCAAAATGACAAAACAAATAAATAACTACCGGATATGTTGAAAGTGTCGATACTTTAATAT
196 GGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTGAAAGTGTCGATACTTTAATAT
* *
39817 AAGTATCGATACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCTTCTATAAAGTGTCGATACTTT
261 AAGTATCGACACTTTTAGAATTTAAAAGAGAAGAAGTTATAGC--CTATAAAGTGTCGATACTTT
* *
39882 AAAAAAATGTATCGATCCATAACAATAAAACAGGTAAAAATA-GACAAAACAGGTCTAAAAAATG
324 TAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATAGGACAAAACAGGTCTAAAAAATG
* * * * * *
39946 ACAAAACCGATAAAGCGCTACTGGATATGTTG-AAGATGTCGATATTTTAATA
389 ACAAAATCGGTAAAACGATACTGGATATATTGAAAG-TGTCGATAATTTAATA
39998 AGTACGCGTA
Statistics
Matches: 1075, Mismatches: 77, Indels: 27
0.91 0.07 0.02
Matches are distributed among these distances:
723 60 0.06
724 5 0.00
725 520 0.48
726 341 0.32
727 82 0.08
728 67 0.06
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.27
Consensus pattern (727 bp):
ATAGGACAAAACAGGTCTAAAAATGACAAAATCGGTAAAGCGCTACCGGATATGTTGAAAGTGTC
GATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAC
GTGTCGACACTTTAAGCAAATGTATCGATCCATAACAATATAACATCCTAAAATATGACAAAACC
GGTCTCAAAATGACAAAACAGGTAAATAACTACCGAATATGTTGAAAGTGTCGATACTTTAATAT
AAGTATCGACACTTTTAGAATTTAAAAGAGAAGAAGTTATAGCCTATAAAGTGTCGATACTTTTA
AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATAGGACAAAACAGGTCTAAAAAATGAC
AAAATCGGTAAAACGATACTGGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGACACTT
TCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAACATGTCGACACTTTAAAAAAATATATCG
ATCCATAACAAAATAACAACCTAAAATATAACAAAACCAGTCTCAAAATGACAAAACAGATAAAT
AACTACCGGATATGTTGAAAATGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAA
GAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATA
TAACAAGTAAAA
Found at i:40417 original size:18 final size:19
Alignment explanation
Indices: 40394--40444 Score: 77
Period size: 18 Copynumber: 2.7 Consensus size: 19
40384 TAATATCATA
40394 TAAAAAATGATATTATA-G
1 TAAAAAATGATATTATAGG
*
40412 TAAAAAATGATCTTATAGG
1 TAAAAAATGATATTATAGG
*
40431 TAGAAAATGATATT
1 TAAAAAATGATATT
40445 TTAAGTTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 16 0.55
19 13 0.45
ACGTcount: A:0.51, C:0.02, G:0.14, T:0.33
Consensus pattern (19 bp):
TAAAAAATGATATTATAGG
Found at i:41755 original size:22 final size:22
Alignment explanation
Indices: 41704--41759 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
41694 AATGTTTTTG
*
41704 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
41727 TGGTTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
41749 CTTTTATTATA
1 -TTTTATTATA
41760 AATGCATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.32
23 2 0.07
24 17 0.61
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:44923 original size:19 final size:19
Alignment explanation
Indices: 44899--44948 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
44889 AAATGTAGGG
44899 TTAATTTTGTATAAGATTT
1 TTAATTTTGTATAAGATTT
*
44918 TTAATTTTGTATACGATTT
1 TTAATTTTGTATAAGATTT
*
44937 ATAATTTTGTAT
1 TTAATTTTGTAT
44949 GTGAATGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (19 bp):
TTAATTTTGTATAAGATTT
Found at i:46462 original size:199 final size:199
Alignment explanation
Indices: 45326--46596 Score: 2210
Period size: 198 Copynumber: 6.4 Consensus size: 199
45316 CTTATGTGTA
* * *
45326 ATACATTTATAATAAGTGTTGATCCCAAAAACATCGAAACCCATAATTATGATGTAATAGGTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
* * *
45391 TTAACAATTTAACCGGTCTAAGTATACCGATTTTTGAGAAAATAGGTGTACAAAAAGTATCGACA
66 TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
45456 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
45521 GTCG
196 GTCG
*
45525 ATACATTTATAATAAGTGTCGATCCCAAAAATATCGAAACCCATAATTATAATGTACTAGGTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
45590 TTAACAATGTAACCGGTCTAAGTATACC-GTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
66 TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
45654 CAAATAAAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCAAAACCAAGTGCACTGAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
45719 GTCG
196 GTCG
*
45723 ATACATTTATAATAAGTGTCGATCTCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
*
45788 TTAACAATGTAACCGGT-TAAGTATACCGGTTTTTGAGAAAACAGGTGTATAAAAAGTATCGACA
66 TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
45852 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAA-TGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
45916 GTCG
196 GTCG
* * * * * *
45920 ATACATTTATAAGAACTGTCGATTCCAAAAACATCGAAACCCATAATTATGATTTAATAGGTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
*
45985 TTAACAATTTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
66 TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
** *
46050 CAAATAAAACAAGTGTCGATACTTTTGGTATATAATGTATTTCAAAACCAAGTGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
*
46115 GTCC
196 GTCG
46119 ATACATTTATAATAAGTGTCGATCCC-AAAA-ATCGAAACCCATAATTATAATGTACTAGGTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
* *
46182 TTAACAATGTAATCGGTCTAAGTATACCGGTTTTTGAGAAAACAAGTGTACAAAAAGTATCGACA
66 TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
* *
46247 CAAATAAAACAAGTGTCGATAATTTTGGTCCAGAATGTATTTCAAAACCAAGTTCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
46312 GTCG
196 GTCG
* *
46316 ATACATTTATTATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGTTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
* * *
46381 TTAACAATGTAATCGATCTAAGTATACCGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACA
66 TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
*
46446 CAAATAAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACTAAAAAGT
131 CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
46511 GTCG
196 GTCG
*
46515 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAA
1 ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
46580 TTAACAATGTAACCGGT
66 TTAACAATGTAACCGGT
46597 ATAAAAATAC
Statistics
Matches: 1013, Mismatches: 54, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
197 280 0.28
198 368 0.36
199 365 0.36
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (199 bp):
ATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTACTAGGTAAA
TTAACAATGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACA
CAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGT
GTCG
Found at i:46977 original size:15 final size:15
Alignment explanation
Indices: 46957--47014 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
46947 TTTCTCAAAG
*
46957 CTCTTCTCAACCTAC
1 CTCTTCTCAACCCAC
*
46972 CTCTTCCCAACCCAC
1 CTCTTCTCAACCCAC
46987 CTCTTCTCAACCACAAC
1 CTCTTCTCAACC-C-AC
47004 CTCCTTCTCAA
1 CT-CTTCTCAA
47015 ACAATCACCC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 24 0.65
16 1 0.03
17 4 0.11
18 8 0.22
ACGTcount: A:0.22, C:0.50, G:0.00, T:0.28
Consensus pattern (15 bp):
CTCTTCTCAACCCAC
Found at i:48174 original size:12 final size:12
Alignment explanation
Indices: 48157--48196 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
48147 CAAGCGGTCA
48157 ATGAAGATGACG
1 ATGAAGATGACG
*
48169 ATGAAGATGAAG
1 ATGAAGATGACG
* *
48181 ATGATGACGACG
1 ATGAAGATGACG
48193 ATGA
1 ATGA
48197 TGATCCAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.07, G:0.33, T:0.17
Consensus pattern (12 bp):
ATGAAGATGACG
Found at i:48195 original size:18 final size:18
Alignment explanation
Indices: 48157--48196 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48147 CAAGCGGTCA
*
48157 ATGAAGATGACGATGAAG
1 ATGAAGATGACGACGAAG
* *
48175 ATGAAGATGATGACGACG
1 ATGAAGATGACGACGAAG
48193 ATGA
1 ATGA
48197 TGATCCAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.33, T:0.17
Consensus pattern (18 bp):
ATGAAGATGACGACGAAG
Found at i:49455 original size:24 final size:24
Alignment explanation
Indices: 49428--49474 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
49418 TTTCATTTAT
49428 AATTAGAGTTTGAATTTAAATTTC
1 AATTAGAGTTTGAATTTAAATTTC
* * *
49452 AATTTGAGTTTGAGTTTGAATTT
1 AATTAGAGTTTGAATTTAAATTT
49475 AAATGTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (24 bp):
AATTAGAGTTTGAATTTAAATTTC
Found at i:50045 original size:198 final size:196
Alignment explanation
Indices: 49658--50312 Score: 1019
Period size: 198 Copynumber: 3.3 Consensus size: 196
49648 TTATTCATTC
* * * *
49658 GTGTCGATACATGTT-GTCCATAATGTATTTCCAAACCAAGTGCACGAAAAATGTGTCGATACAT
1 GTGTCGATAC-TTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAA-GTGTCGATACAT
* * * *
49722 TTATAATAAGTGTCGATCCTAAAATATCGAAACCCATAATTATGATGTAATATGTAAATTAACAA
64 TTATAAT-AGTGTCGATCCCAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAA
*
49787 TTTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGTGTACAAAAAGTATCGACACAAATAAA
128 TGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGTGTACAAAAAGTATCGACACAAATAAA
49852 ACAA
193 ACAA
49856 GTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGTGTCGATACATTT
1 GTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGTGTCGATACATTT
*
49921 ATAATAGTGTCGATCCCACAAACATCGAAACCCATAATTATAATGTACTAGGTAAATTAACAATG
66 ATAATAGTGTCGATCCCA-AAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATG
*
49986 TAACCGGTCTAAGTATACCGATTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAA
130 TAACCGGTCTAAGTATACCGGTTTTTGAGAAAACA-GTGTACAAAAAGTATCGACACAAATAAAA
50051 CAA
194 CAA
* * *
50054 GTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACTAAATGCACT-AAACGTGTCGATACATTT
1 GTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGTGTCGATACATTT
*
50118 ATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGAA-GTAATAGGTAAATTAACAA
66 ATAA-TAGTGTCGATCCC-AAAACATCGAAACCCATAATTAT-AATGTAATAGGTAAATTAACAA
* * *
50182 TGTAATCGGTCTAAATATACCGGTTTATGAGAAAACAAGTGTACAAAAAGTATCGACACAAATAA
128 TGTAACCGGTCTAAGTATACCGGTTTTTGAGAAAAC-AGTGTACAAAAAGTATCGACACAAATAA
50247 AACAA
192 AACAA
* * *
50252 GTGTCGATACTTTTGGTCTAGAATGTATTTCAAAACCAATTGCACTAAAACGTGTCGATAC
1 GTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGTGTCGATAC
50313 TAAAAACATC
Statistics
Matches: 426, Mismatches: 23, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
196 12 0.03
197 118 0.28
198 278 0.65
199 18 0.04
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (196 bp):
GTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAAAGTGTCGATACATTT
ATAATAGTGTCGATCCCAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATGT
AACCGGTCTAAGTATACCGGTTTTTGAGAAAACAGTGTACAAAAAGTATCGACACAAATAAAACA
A
Found at i:50648 original size:22 final size:21
Alignment explanation
Indices: 50608--50649 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
50598 TCAACATAAT
* *
50608 GTGTTGACACTTTTTAAATTC
1 GTGTCGACACTTTTAAAATTC
50629 GTGTCGACACCTTTTAAAATT
1 GTGTCGACA-CTTTTAAAATT
50650 ATGCATGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (21 bp):
GTGTCGACACTTTTAAAATTC
Found at i:52425 original size:23 final size:23
Alignment explanation
Indices: 52399--52459 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
52389 CAGCTCATAT
*
52399 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
* *
52422 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACCGAAGTGCCACGTAG
*
52445 AATTGCACCGTAGTG
1 AATTGCACCGAAGTG
52460 TCATATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACGTAG
Found at i:52638 original size:99 final size:102
Alignment explanation
Indices: 52478--52896 Score: 700
Period size: 103 Copynumber: 4.1 Consensus size: 102
52468 TAATGTCCAT
* *
52478 AAGGACCACATATAATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
52543 GACTTCACACATGTTCCAAAG-A-ACATATA-TCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATTCCCG
52577 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* * *
52642 GACTTTACACATGTTCTAAAGAATATATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATAT-TCCCG
52680 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* **
52745 GACCTCACACATGTTCCAAAGAATACATATATTCATG
66 GACTTCACACATGTTCCAAAGAATACATATATTCCCG
* *
52782 AAGGACCACATATCATTCCTTAAGAATCATATACAAATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
52847 GACTTCACACATATTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATAT-TCCCG
52885 AAGGACCACATA
1 AAGGACCACATA
52897 GACCCTCTAC
Statistics
Matches: 298, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
99 82 0.28
100 1 0.00
101 6 0.02
102 96 0.32
103 113 0.38
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.26
Consensus pattern (102 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATTCCCG
Found at i:52889 original size:205 final size:202
Alignment explanation
Indices: 52478--52896 Score: 703
Period size: 205 Copynumber: 2.1 Consensus size: 202
52468 TAATGTCCAT
*
52478 AAGGACCACATATAATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* *
52543 GACTTCACACATGTTCCAAAGAACATATATCCCGAAGGACCACATATCATTCCTTAAGAATCATA
66 GACCTCACACATGTTCCAAAGAACATATATCACGAAGGACCACATATCATTCCTTAAGAATCATA
* * * * *
52608 TACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTTACACATGTTCTAAAGAATATATATA
131 TACAAATACCAAGGATCAAGTATGTGTCTCACCAGACTTCACACATATTCCAAAGAATACATATA
52673 TATCCCG
196 TATCCCG
*
52680 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
52745 GACCTCACACATGTTCCAAAGAATACATATATTCATGAAGGACCACATATCATTCCTTAAGAATC
66 GACCTCACACATGTTCCAAAG-A-ACATATA-TCACGAAGGACCACATATCATTCCTTAAGAATC
*
52810 ATATACAAATGCCAAGGATCAAGTATGTGTCTCACCAGACTTCACACATATTCCAAAGAATACAT
128 ATATACAAATACCAAGGATCAAGTATGTGTCTCACCAGACTTCACACATATTCCAAAGAATACAT
*
52875 ATATGTCCCG
193 ATATATCCCG
52885 AAGGACCACATA
1 AAGGACCACATA
52897 GACCCTCTAC
Statistics
Matches: 202, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
202 83 0.41
203 1 0.00
204 7 0.03
205 111 0.55
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.26
Consensus pattern (202 bp):
AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACCTCACACATGTTCCAAAGAACATATATCACGAAGGACCACATATCATTCCTTAAGAATCATA
TACAAATACCAAGGATCAAGTATGTGTCTCACCAGACTTCACACATATTCCAAAGAATACATATA
TATCCCG
Found at i:53460 original size:19 final size:20
Alignment explanation
Indices: 53438--53476 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
53428 TCATATTCGT
*
53438 TTGAGGGGGTATC-ATTCCC
1 TTGAAGGGGTATCGATTCCC
*
53457 TTGAATGGGTATCGATTCCC
1 TTGAAGGGGTATCGATTCCC
53477 CTAGCCAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (20 bp):
TTGAAGGGGTATCGATTCCC
Found at i:59456 original size:23 final size:23
Alignment explanation
Indices: 59430--59482 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
59420 ATTGTACCTA
59430 AGTGCCACGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTGCACCGT
**
59453 AGTGCTGCGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTGCACCGT
59476 AGTGCCA
1 AGTGCCA
59483 TATAATAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (23 bp):
AGTGCCACGTAGAATTGCACCGT
Found at i:59624 original size:103 final size:103
Alignment explanation
Indices: 59498--59921 Score: 749
Period size: 103 Copynumber: 4.1 Consensus size: 103
59488 TAATGTCCAT
* *
59498 AAGGACCACATATAATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCCCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCCCACCA
*
59563 GAATTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
59601 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCCCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCCCACCA
59666 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
* * *
59704 AAGGACCACATATCATTCCTTAAGAATCATATACATATATCGAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCCCACCA
*
59769 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
** *
59807 AAGGACCACATATCATTCCTTAAGAATCATATACATATGTCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCCCACCA
*
59872 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
59910 AAGGACCACATA
1 AAGGACCACATA
59922 GACCCTCTAC
Statistics
Matches: 310, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 310 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.25
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCCCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:60440 original size:19 final size:20
Alignment explanation
Indices: 60403--60440 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60393 TTTTTTATTA
*
60403 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
60423 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
60441 TCTAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:60492 original size:21 final size:21
Alignment explanation
Indices: 60468--60510 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
60458 TCATATTCGT
*
60468 TTGAGGGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
* *
60489 TTGAATGGGTATTGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
60510 T
1 T
60511 AGCCCATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:63145 original size:6 final size:6
Alignment explanation
Indices: 63134--63159 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63124 TCAATAGGAT
63134 GTGGTA GTGGTA GTGGTA GTGGTA GT
1 GTGGTA GTGGTA GTGGTA GTGGTA GT
63160 AGAACGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (6 bp):
GTGGTA
Found at i:63823 original size:162 final size:162
Alignment explanation
Indices: 63556--63889 Score: 560
Period size: 162 Copynumber: 2.1 Consensus size: 162
63546 CAGTCTCAAA
* *
63556 ATGACAAAACCGGTAAAATGATACCGAATTTGTTGCAAGTGTCGATAATTTAATATAAGTATCGA
1 ATGACAAAACCGGTAAAACGATACCGAATATGTTGCAAGTGTCGATAATTTAATATAAGTATCGA
**
63621 CACTTTCTGAATTTAAAAAAGAAGAAGTTATAGAGCCTAAAAAGTGTCGACACTTTATGAAAATG
66 CACTTTCTGAATTTAAAAAAGAAGAAGTTATAGAGCCTAAAAAGTGTCGACACTTTAAAAAAATG
*
63686 TATCGATCTATAACAATATAACAGGTAAAAAT
131 TATCGATCCATAACAATATAACAGGTAAAAAT
* * *
63718 ATGACAAAACCGGTAAAACGCTATCGGATATGTTGCAAGTGTCGATAATTTAATATAAGTATCGA
1 ATGACAAAACCGGTAAAACGATACCGAATATGTTGCAAGTGTCGATAATTTAATATAAGTATCGA
* * *
63783 CACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGATACTTTAAAAAAATG
66 CACTTTCTGAATTTAAAAAAGAAGAAGTTATAGAGCCTAAAAAGTGTCGACACTTTAAAAAAATG
63848 TATCGATCCATAACAATATAACAGGTAAAAAT
131 TATCGATCCATAACAATATAACAGGTAAAAAT
*
63880 ATGAAAAAAC
1 ATGACAAAAC
63890 TGGTCACAAA
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
162 160 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (162 bp):
ATGACAAAACCGGTAAAACGATACCGAATATGTTGCAAGTGTCGATAATTTAATATAAGTATCGA
CACTTTCTGAATTTAAAAAAGAAGAAGTTATAGAGCCTAAAAAGTGTCGACACTTTAAAAAAATG
TATCGATCCATAACAATATAACAGGTAAAAAT
Found at i:64553 original size:23 final size:23
Alignment explanation
Indices: 64527--64585 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
64517 CGGTTAAATG
*
64527 CCTATTTTATTATATAAGCGCTA
1 CCTATTATATTATATAAGCGCTA
64550 CCTATTATATTATATAAGCGCTA
1 CCTATTATATTATATAAGCGCTA
* *
64573 CCTAATATGTTAT
1 CCTATTATATTAT
64586 TGTGCTTGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.42
Consensus pattern (23 bp):
CCTATTATATTATATAAGCGCTA
Found at i:64733 original size:17 final size:17
Alignment explanation
Indices: 64711--64744 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
64701 GAAGTACCCT
64711 TATCTTTTACATTAGAA
1 TATCTTTTACATTAGAA
64728 TATCTTTTACATTAGAA
1 TATCTTTTACATTAGAA
64745 GGTTGGTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
TATCTTTTACATTAGAA
Found at i:66057 original size:24 final size:24
Alignment explanation
Indices: 65999--66047 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
65989 GCACTTTATA
65999 TGTCG-TTAATGCACCGTTATGTAT
1 TGTCGATT-ATGCACCGTTATGTAT
66023 TGTCGATTATGCACCGTTATGTAT
1 TGTCGATTATGCACCGTTATGTAT
66047 T
1 T
66048 TTCATTTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (24 bp):
TGTCGATTATGCACCGTTATGTAT
Found at i:66130 original size:49 final size:49
Alignment explanation
Indices: 66056--66209 Score: 148
Period size: 49 Copynumber: 3.1 Consensus size: 49
66046 TTTTCATTTA
* * * *
66056 TGGCATCCTTTCATGCCGATAATGCAACATTATCCGTTTAACTTGCATTAG
1 TGGCA-CCTTTC-TGCCAAAAATGCACCATTATCCATTTAACTTGCATTAG
* * *
66107 TGGCACCTTTCTGCCTAAAATGCACCATT-TGTCATCTAACTTGCATTAG
1 TGGCACCTTTCTGCCAAAAATGCACCATTAT-CCATTTAACTTGCATTAG
* * * * * **
66156 TGACACCTTTATACCAAAAATGCACCGTCAGGCATTTAACTTGCATTAG
1 TGGCACCTTTCTGCCAAAAATGCACCATTATCCATTTAACTTGCATTAG
66205 TGGCA
1 TGGCA
66210 TATTTCTAAG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 73 0.86
50 6 0.07
51 5 0.06
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (49 bp):
TGGCACCTTTCTGCCAAAAATGCACCATTATCCATTTAACTTGCATTAG
Found at i:71298 original size:45 final size:46
Alignment explanation
Indices: 71218--71328 Score: 125
Period size: 45 Copynumber: 2.4 Consensus size: 46
71208 TATATGTAGT
* ** * * *
71218 TAATACACCGTTATATATTTTCATTTGTAGCATCATTTCA-GTTGA
1 TAATGCACCGTTATGCATTTTCATTTATAGCATCATTCCATGTCGA
* * *
71263 TTATGCACCGTTATGCATTTTCATTTATGGTATCATTCCATGTCGA
1 TAATGCACCGTTATGCATTTTCATTTATAGCATCATTCCATGTCGA
*
71309 TAATGCACTGTTATGCATTT
1 TAATGCACCGTTATGCATTT
71329 AACTTGCATT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
45 32 0.59
46 22 0.41
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (46 bp):
TAATGCACCGTTATGCATTTTCATTTATAGCATCATTCCATGTCGA
Found at i:71494 original size:97 final size:97
Alignment explanation
Indices: 71310--71630 Score: 482
Period size: 97 Copynumber: 3.3 Consensus size: 97
71300 CCATGTCGAT
* * *
71310 AATGCACTGTTATGCATTTAACTTGCATTAGTGGCACCTATCTGCCTAAAATGCACCATTTGTCA
1 AATGCACCGTTAGGCATTTAACTTGCATTAGTGGCACCTTTCTGCC-AAAATGCACCATTTGTCA
*
71375 TCTAACTTGCATTAGT-AGCACCTTTCTACTAAA
65 TCTAACTTGCATTAGTGA-CACCTTTCTACCAAA
* * *
71408 AATGCACAGTTAGGCATTTAACTTGCATTAGTGGCACCTTTCTACCATAATGCACCATTTGTCAT
1 AATGCACCGTTAGGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAATGCACCATTTGTCAT
71473 CTAACTTGCATTAGTGACACCTTTCTACCAAA
66 CTAACTTGCATTAGTGACACCTTTCTACCAAA
** *
71505 AATGCACCGAGAGGCATTTAACTTGCATTAGTGGCACATTTCTGCCAAAATGCACCATTTGTCAT
1 AATGCACCGTTAGGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAATGCACCATTTGTCAT
* * *
71570 CTAACTTTCATTAGTGGCACCTCTCTACCAAA
66 CTAACTTGCATTAGTGACACCTTTCTACCAAA
* *
71602 AATGCACCGTTAGACATTTAACTTTCATT
1 AATGCACCGTTAGGCATTTAACTTGCATT
71631 TTAGAGAAGT
Statistics
Matches: 203, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
97 160 0.79
98 43 0.21
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (97 bp):
AATGCACCGTTAGGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAATGCACCATTTGTCAT
CTAACTTGCATTAGTGACACCTTTCTACCAAA
Found at i:71624 original size:49 final size:49
Alignment explanation
Indices: 71310--71630 Score: 360
Period size: 49 Copynumber: 6.6 Consensus size: 49
71300 CCATGTCGAT
* * * *
71310 AATGCACTGTTA-TGCATTTAACTTGCATTAGTGGCACCTATCTGCCTAA
1 AATGCACCGTTAGT-CATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
* * * * *
71359 AATGCACCATTTGTCATCTAACTTGCATTAGTAGCACCTTTCTACTAAA
1 AATGCACCGTTAGTCATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
* * *
71408 AATGCACAGTTAGGCATTTAACTTGCATTAGTGGCACCTTTCTACC-AT
1 AATGCACCGTTAGTCATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
* * * *
71456 AATGCACCATTTGTCATCTAACTTGCATTAGTGACACCTTTCTACCAAA
1 AATGCACCGTTAGTCATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
** * * *
71505 AATGCACCGAGAGGCATTTAACTTGCATTAGTGGCACATTTCTGCC-AA
1 AATGCACCGTTAGTCATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
* * * * *
71553 AATGCACCATTTGTCATCTAACTTTCATTAGTGGCACCTCTCTACCAAA
1 AATGCACCGTTAGTCATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
* *
71602 AATGCACCGTTAGACATTTAACTTTCATT
1 AATGCACCGTTAGTCATTTAACTTGCATT
71631 TTAGAGAAGT
Statistics
Matches: 222, Mismatches: 47, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
48 79 0.36
49 142 0.64
50 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (49 bp):
AATGCACCGTTAGTCATTTAACTTGCATTAGTGGCACCTTTCTACCAAA
Found at i:71624 original size:146 final size:145
Alignment explanation
Indices: 71310--71630 Score: 360
Period size: 146 Copynumber: 2.2 Consensus size: 145
71300 CCATGTCGAT
* * * * ** *
71310 AATGCACTGTTATGCATTTAACTTGCATTAGTGGCACCTATCTGCCTAAAATGCACCATTTGTCA
1 AATGCACCGTTA-GCATTTAACTTGCATTAGTGACACCTATCTACCAAAAATGCACCATGAGGCA
* *
71375 TCTAACTTGCATTAGTAGCACCTTTCTACTAAAAATGCACAGTTAGGCATTTAACTTGCATTAGT
65 TCTAACTTGCATTAGTAGCACATTTCTACTAAAAATGCACAGTTAGGCATCTAACTTGCATTAGT
* *
71440 GGCACCTTTCTACCAT
130 GGCACCTCTCTACCAA
* * * *
71456 AATGCACCATTTGTCATCTAACTTGCATTAGTGACACCTTTCTACCAAAAATGCACCGA-GAGGC
1 AATGCACCGTTAG-CATTTAACTTGCATTAGTGACACCTATCTACCAAAAATGCACC-ATGAGGC
* * * * * * *
71520 ATTTAACTTGCATTAGTGGCACATTTCTGC-CAAAATGCACCA-TTTGTCATCTAACTTTCATTA
64 ATCTAACTTGCATTAGTAGCACATTTCTACTAAAAATGCA-CAGTTAGGCATCTAACTTGCATTA
71583 GTGGCACCTCTCTACCAAA
128 GTGGCACCTCTCTACC-AA
*
71602 AATGCACCGTTAGACATTTAACTTTCATT
1 AATGCACCGTTAG-CATTTAACTTGCATT
71631 TTAGAGAAGT
Statistics
Matches: 144, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
145 41 0.28
146 102 0.71
147 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (145 bp):
AATGCACCGTTAGCATTTAACTTGCATTAGTGACACCTATCTACCAAAAATGCACCATGAGGCAT
CTAACTTGCATTAGTAGCACATTTCTACTAAAAATGCACAGTTAGGCATCTAACTTGCATTAGTG
GCACCTCTCTACCAA
Found at i:73262 original size:9 final size:9
Alignment explanation
Indices: 73244--73329 Score: 75
Period size: 9 Copynumber: 10.6 Consensus size: 9
73234 GGAAGAGTTA
*
73244 TCTTCTTCT
1 TCTTCATCT
73253 TCTTTC-TCT
1 TC-TTCATCT
73262 TCTTCATC-
1 TCTTCATCT
73270 T-TTC-TCT
1 TCTTCATCT
73277 TCTTCATC-
1 TCTTCATCT
73285 T-TTC-TCT
1 TCTTCATCT
73292 TCTTCATCT
1 TCTTCATCT
73301 TCTTC-TC-
1 TCTTCATCT
*
73308 CCTTC-TCT
1 TCTTCATCT
73316 TCTTCATCT
1 TCTTCATCT
73325 TCTTC
1 TCTTC
73330 TCCCCGTGGA
Statistics
Matches: 65, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
6 4 0.06
7 14 0.22
8 17 0.26
9 27 0.42
10 3 0.05
ACGTcount: A:0.05, C:0.36, G:0.00, T:0.59
Consensus pattern (9 bp):
TCTTCATCT
Found at i:73264 original size:15 final size:15
Alignment explanation
Indices: 73244--73301 Score: 107
Period size: 15 Copynumber: 3.9 Consensus size: 15
73234 GGAAGAGTTA
*
73244 TCTTCTTCTTCTTTC
1 TCTTCTTCATCTTTC
73259 TCTTCTTCATCTTTC
1 TCTTCTTCATCTTTC
73274 TCTTCTTCATCTTTC
1 TCTTCTTCATCTTTC
73289 TCTTCTTCATCTT
1 TCTTCTTCATCTT
73302 CTTCTCCCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.62
Consensus pattern (15 bp):
TCTTCTTCATCTTTC
Found at i:73277 original size:24 final size:26
Alignment explanation
Indices: 73247--73327 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 26
73237 AGAGTTATCT
73247 TCTTCTTCTTTCTCTTCTTCATCTTTC
1 TCTTCTTCTTTCTCTTCTTCATC-TTC
73274 TCTTCTTCATCTTTCTCTTCTTCATC-T-
1 TCTTC-T--TCTTTCTCTTCTTCATCTTC
* *
73301 TCTTCTCCCTTCTCTTCTTCATCTTC
1 TCTTCTTCTTTCTCTTCTTCATCTTC
73327 T
1 T
73328 TCTCCCCGTG
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
24 15 0.32
25 1 0.02
26 2 0.04
27 10 0.21
28 2 0.04
30 17 0.36
ACGTcount: A:0.05, C:0.36, G:0.00, T:0.59
Consensus pattern (26 bp):
TCTTCTTCTTTCTCTTCTTCATCTTC
Found at i:73302 original size:39 final size:39
Alignment explanation
Indices: 73250--73325 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 39
73240 GTTATCTTCT
*
73250 TCTTCTTTCTCTTCTTCAT-CTTTCTCTTCTTCATCTTTC
1 TCTTCTTTCTCTTCTTC-TCCCTTCTCTTCTTCATCTTTC
73289 TCTTC-TTCATCTTCTTCTCCCTTCTCTTCTTCATCTT
1 TCTTCTTTC-TCTTCTTCTCCCTTCTCTTCTTCATCTT
73326 CTTCTCCCCG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 4 0.12
39 30 0.88
ACGTcount: A:0.05, C:0.36, G:0.00, T:0.59
Consensus pattern (39 bp):
TCTTCTTTCTCTTCTTCTCCCTTCTCTTCTTCATCTTTC
Found at i:75206 original size:19 final size:19
Alignment explanation
Indices: 75182--75218 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
75172 ATGAAATGTA
75182 TTATATGAATTACATGATG
1 TTATATGAATTACATGATG
* *
75201 TTATATGTATTATATGAT
1 TTATATGAATTACATGAT
75219 ATATAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (19 bp):
TTATATGAATTACATGATG
Found at i:80884 original size:23 final size:21
Alignment explanation
Indices: 80841--80887 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 21
80831 TTACACATAC
80841 ATGTGATATGTGACAAAAGAA
1 ATGTGATATGTGACAAAAGAA
80862 ATGT-ATATGTGATCACAAGAGAA
1 ATGTGATATGTGA-CA-AA-AGAA
80885 ATG
1 ATG
80888 ACACGAGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.35
21 6 0.26
22 2 0.09
23 7 0.30
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (21 bp):
ATGTGATATGTGACAAAAGAA
Found at i:81217 original size:19 final size:19
Alignment explanation
Indices: 81193--81229 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
81183 ATGAAATGTA
81193 TTATATGAATTACATGATG
1 TTATATGAATTACATGATG
* *
81212 TTATATGTATTATATGAT
1 TTATATGAATTACATGAT
81230 ATACAGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (19 bp):
TTATATGAATTACATGATG
Found at i:84486 original size:32 final size:31
Alignment explanation
Indices: 84409--84487 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
84399 ACTTTTGATC
* * *
84409 AAATTTAAAGGTCAAATTGATATTTTATCTA
1 AAATTTTAAGGTCAAAATGATATTTTAACTA
*
84440 AAA-GTTAAGGGTCAAAATGATATTTTCAAC-A
1 AAATTTTAA-GGTCAAAATGATATTTT-AACTA
84471 AAATTTTAAGAGTCAAA
1 AAATTTTAAG-GTCAAA
84488 TTAGATATGT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
30 3 0.08
31 24 0.62
32 12 0.31
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (31 bp):
AAATTTTAAGGTCAAAATGATATTTTAACTA
Found at i:84769 original size:12 final size:13
Alignment explanation
Indices: 84748--84791 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
84738 TAATTTTTAA
*
84748 AATTTATTTATTT
1 AATTTCTTTATTT
84761 -ATTTCTTTAATTT
1 AATTTCTTT-ATTT
84774 AATTT-TTTATTT
1 AATTTCTTTATTT
84786 AATTTC
1 AATTTC
84792 ACATTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 16 0.59
13 7 0.26
14 4 0.15
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (13 bp):
AATTTCTTTATTT
Found at i:84773 original size:17 final size:17
Alignment explanation
Indices: 84749--84790 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
84739 AATTTTTAAA
84749 ATTT-ATTT-ATTTATTT
1 ATTTAATTTAATTT-TTT
*
84765 CTTTAATTTAATTTTTT
1 ATTTAATTTAATTTTTT
84782 ATTTAATTT
1 ATTTAATTT
84791 CACATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 3 0.14
17 15 0.68
18 4 0.18
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTAATTTAATTTTTT
Found at i:85138 original size:15 final size:15
Alignment explanation
Indices: 85118--85148 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85108 AAAGAATTTT
85118 TTAATCCTAACAATA
1 TTAATCCTAACAATA
85133 TTAATCCTAACAATA
1 TTAATCCTAACAATA
85148 T
1 T
85149 CACAATACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.35
Consensus pattern (15 bp):
TTAATCCTAACAATA
Found at i:89992 original size:20 final size:20
Alignment explanation
Indices: 89967--90016 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
89957 TGATGTTGGT
* *
89967 TGACTCTTTTCTGATAAATG
1 TGACTCTTTTCTGACAAAGG
89987 TGACTCTTTTCTGACAAAGG
1 TGACTCTTTTCTGACAAAGG
*
90007 TGAATCTTTT
1 TGACTCTTTT
90017 TCCTCAGCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (20 bp):
TGACTCTTTTCTGACAAAGG
Found at i:90406 original size:2 final size:2
Alignment explanation
Indices: 90399--90427 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
90389 TCCGTGTATT
90399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
90428 GAGGTTGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:90783 original size:15 final size:15
Alignment explanation
Indices: 90748--90799 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
90738 CGCCCCGCAT
* *
90748 CCGCACCGCATCCACC
1 CCGCCCCGCATCC-GC
90764 CCGCCCCGCATCCGC
1 CCGCCCCGCATCCGC
*
90779 CCGCCCCACATCCGC
1 CCGCCCCGCATCCGC
*
90794 CTGCCC
1 CCGCCC
90800 AACTAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.12, C:0.65, G:0.15, T:0.08
Consensus pattern (15 bp):
CCGCCCCGCATCCGC
Found at i:96587 original size:23 final size:22
Alignment explanation
Indices: 96536--96595 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 22
96526 TATTTAACCC
96536 TATTTATTATTATTTATTTATT
1 TATTTATTATTATTTATTTATT
96558 TATTTTATTATT-TTTACTCTGT-TT
1 TA-TTTATTATTATTTA-T-T-TATT
96582 TATTTATT-TTATTT
1 TATTTATTATTATTT
96596 TCCCCTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
22 8 0.24
23 19 0.58
24 5 0.15
25 1 0.03
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (22 bp):
TATTTATTATTATTTATTTATT
Found at i:100862 original size:84 final size:84
Alignment explanation
Indices: 100721--101326 Score: 652
Period size: 84 Copynumber: 7.3 Consensus size: 84
100711 TTAGAAACTG
* * * * *
100721 TTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTC-ACCAAAAGATCTTCGAGTTCGACTACG
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTACG
*
100785 CTCAGCTCCAAGGCATATCA
65 CTCAGCTCCAAGGCACATCA
* * *
100805 TTTGCAGTATAACTTAAGTCGAGGAGGGTTATCTGCCAACCAAATACCTTCGAGTTCGACTACGC
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
100870 TCAGCTCCAAGGCACATCA
66 TCAGCTCCAAGGCACATCA
** * * * * *
100889 TTTGCAATATAACTTAAGTCCAGAATGGCTATCT----ACCAAAGACCCTT-GAGTTCGATTACA
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGA-CCTTCGAGTTCGACTACG
* *
100949 CTCAGCTTCGAGGGCACATCA
65 CTCAGC-TCCAAGGCACATCA
* * * * * *
100970 TTTACAACATAACTCAAGACTAGAAGGGTTATCTGTCACAA--AAAAACCTTCGAGTTCGACTAC
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTG-C-CAACCAAAGACCTTCGAGTTCGACTAC
* *
101033 GCTCAACTCCAAGGCATATCA
64 GCTCAGCTCCAAGGCACATCA
* *
101054 TTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTACGC
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
101119 TCAGCTCCAAGGCACATCA
66 TCAGCTCCAAGGCACATCA
* * * *
101138 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAAGACCCTT-GAGTTCGATTACA
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGA-CCTTCGAGTTCGACTACG
** * *
101198 CTCAGCTTTGAGGGTACATCA
65 CTCAGC-TCCAAGGCACATCA
* * * * *
101219 TTTGCAGCATAACTCAAGGCTAGAAGGGTTATCT----ACCAAAGACCTTCGAGTTTGACTACGT
1 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
101280 TCAGCTCCAAGGCACATCA
66 TCAGCTCCAAGGCACATCA
*
101299 TTTGCAGCATAGCTTAAGTCGAGAAGGG
1 TTTGCAGCATAACTTAAGTCGAGAAGGG
101327 CCCCTCGAGT
Statistics
Matches: 436, Mismatches: 70, Indels: 36
0.80 0.13 0.07
Matches are distributed among these distances:
80 85 0.19
81 108 0.25
82 3 0.01
83 1 0.00
84 215 0.49
85 23 0.05
87 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (84 bp):
TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
TCAGCTCCAAGGCACATCA
Found at i:101045 original size:165 final size:162
Alignment explanation
Indices: 100721--101480 Score: 629
Period size: 165 Copynumber: 4.7 Consensus size: 162
100711 TTAGAAACTG
* * * * * *
100721 TTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGATCTTCGAGTTCGACTACGC
1 TTTGCAGTATAACTTAAGTCCAGAAGGGTTATC--T-ACC-AAAGACCTTCGAGTTTGACTACGC
* * ** * * * *
100786 TCAGCTCCAAGGCATATCATTTGCAGTATAACTTAAGTCGAGGAGGGTTATCTGCCAACCAAATA
62 TCAGCTCCAAGGCACATCATTTACAACATAACTCAAGACGAGAAGGGTTATCTGCCAA--AAAAA
100851 CCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
125 CCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* * * * * *
100889 TTTGCAATATAACTTAAGTCCAGAATGGCTATCTACCAAAGACCCTT-GAGTTCGATTACACTCA
1 TTTGCAGTATAACTTAAGTCCAGAAGGGTTATCTACCAAAGA-CCTTCGAGTTTGACTACGCTCA
* * *
100953 GCTTCGAGGGCACATCATTTACAACATAACTCAAGACTAGAAGGGTTATCTGTCACAAAAAAACC
65 GC-TCCAAGGCACATCATTTACAACATAACTCAAGACGAGAAGGGTTATCTG-C-CAAAAAAACC
* *
101018 TTCGAGTTCGACTACGCTCAACTCCAAGGCATATCA
127 TTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
*
101054 TTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTACGC
1 TTTGCAGTATAACTTAAGTCCAGAAGGGTTATCT----ACCAAAGACCTTCGAGTTTGACTACGC
* * * * * * * *
101119 TCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCC-AAAGACCC
62 TCAGCTCCAAGGCACATCATTTACAACATAACTCAAGACGAGAAGGGTTATCTGCCAAAAAAACC
* * ** * *
101183 TT-GAGTTCGATTACACTCAGCTTTGAGGGTACATCA
127 TTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCA
* * * * *
101219 TTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTACCAAAGACCTTCGAGTTTGACTACGTTCAG
1 TTTGCAGTATAACTTAAGTCCAGAAGGGTTATCTACCAAAGACCTTCGAGTTTGACTACGCTCAG
* * * * *
101284 CTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAA-GG------GCC-------CC-TCG
66 CTCCAAGGCACATCATTTACAACATAACTCAAGACGAGAAGGGTTATCTGCCAAAAAAACCTTCG
* * * *
101334 AGTTCGATTACACTCAGCTTCGAGGGCACATCA
131 AGTTCGACTACGCTCAGC-TCCAAGGCACATCA
* * * * * * **
101367 TTTTCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAAAGACCTTCGAGTTTGACTATACTCAG
1 TTTGCAGTATAACTTAAGTCCAGAAGGGTTATCTACCAAAGACCTTCGAGTTTGACTACGCTCAG
* * * * * * *
101432 CTCTAAGGCTCATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATCT
66 CTCCAAGGCACATCATTTACAACATAACTCAAGACGAGAAGGGTTATCT
101481 ATCAATAAAA
Statistics
Matches: 507, Mismatches: 67, Indels: 49
0.81 0.11 0.08
Matches are distributed among these distances:
147 1 0.00
148 128 0.25
149 2 0.00
154 3 0.01
160 2 0.00
161 70 0.14
164 38 0.07
165 162 0.32
166 3 0.01
167 4 0.01
168 70 0.14
169 24 0.05
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (162 bp):
TTTGCAGTATAACTTAAGTCCAGAAGGGTTATCTACCAAAGACCTTCGAGTTTGACTACGCTCAG
CTCCAAGGCACATCATTTACAACATAACTCAAGACGAGAAGGGTTATCTGCCAAAAAAACCTTCG
AGTTCGACTACGCTCAGCTCCAAGGCACATCA
Found at i:101170 original size:249 final size:248
Alignment explanation
Indices: 100728--101326 Score: 952
Period size: 249 Copynumber: 2.4 Consensus size: 248
100718 CTGTTTGCAG
*
100728 CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGATCTTCGAGTTCGACTACGCTCAGCTC
1 CATAACTCAAGGCTAGAAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTC
* *
100793 CAAGGCATATCATTTGCAGTATAACTTAAGTCGAGGAGGGTTATCTGCCAACCAAATACCTTCGA
65 CAAGGCATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGA
* *
100858 GTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAATATAACTTAAGTCCAGAATGGCTATCT
130 GTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCCAGAAGGGCTATCT
100923 ACCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAA
195 ACCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAA
* * *
100977 CATAACTCAAGACTAGAAGGGTTATCTGTCACAAAAAAACCTTCGAGTTCGACTACGCTCAACTC
1 CATAACTCAAGGCTAGAAGGGTTATCTGTCAC-AAAAGACCTTCGAGTTCGACTACGCTCAGCTC
101042 CAAGGCATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGA
65 CAAGGCATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGA
* * * *
101107 GTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT
130 GTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCCAGAAGGGCTATCT
* * * * *
101172 GCCAAAGACCCTTGAGTTCGATTACACTCAGCTTTGAGGGTACATCATTTGCAG
195 ACCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAA
* * *
101226 CATAACTCAAGGCTAGAAGGGTTATC--T-ACCAAAGACCTTCGAGTTTGACTACGTTCAGCTCC
1 CATAACTCAAGGCTAGAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCC
* * *
101288 AAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGG
66 AAGGCATATCATTTGCAGTATAACTTAAGTCGAGAAGGG
101327 CCCCTCGAGT
Statistics
Matches: 323, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
245 64 0.20
246 2 0.01
247 1 0.00
248 1 0.00
249 255 0.79
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (248 bp):
CATAACTCAAGGCTAGAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCC
AAGGCATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAG
TTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCCAGAAGGGCTATCTA
CCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAA
Found at i:101458 original size:148 final size:148
Alignment explanation
Indices: 101180--101475 Score: 466
Period size: 148 Copynumber: 2.0 Consensus size: 148
101170 CTGCCAAAGA
* * *
101180 CCCTTGAGTTCGATTACACTCAGCTTTGAGGGTACATCATTTGCAGCATAACTCAAGGCTAGAAG
1 CCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAG
** *
101245 GGTTATCTACCAAAGACCTTCGAGTTTGACTACGTTCAGCTCCAAGGCACATCATTTGCAGCATA
66 GGTTATCTACCAAAGACCTTCGAGTTTGACTACACTCAGCTCCAAGGCACATCATTTGCAACATA
* * *
101310 GCTTAAGTCGAGAAGGGC
131 GCTCAAGGCAAGAAGGGC
*
101328 CCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTTCAGCATAACTCAAGGCTAGAAG
1 CCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAG
* * * *
101393 GGTTATCTGCCAAAGACCTTCGAGTTTGACTATACTCAGCTCTAAGGCTCATCATTTGCAACATA
66 GGTTATCTACCAAAGACCTTCGAGTTTGACTACACTCAGCTCCAAGGCACATCATTTGCAACATA
101458 GCTCAAGGCAAGAAGGGC
131 GCTCAAGGCAAGAAGGGC
101476 TATCTATCAA
Statistics
Matches: 134, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
148 134 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (148 bp):
CCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAG
GGTTATCTACCAAAGACCTTCGAGTTTGACTACACTCAGCTCCAAGGCACATCATTTGCAACATA
GCTCAAGGCAAGAAGGGC
Found at i:102515 original size:33 final size:34
Alignment explanation
Indices: 102473--102553 Score: 119
Period size: 35 Copynumber: 2.4 Consensus size: 34
102463 TAGGGGAAAG
102473 AGATATGAAATACAAG-ATTTTTTTTACACCCAT
1 AGATATGAAATACAAGTATTTTTTTTACACCCAT
*
102506 AGATATGAAATACAAGTTTTTTTTTTTACACCCAT
1 AGATATGAAATACAAG-TATTTTTTTTACACCCAT
* *
102541 ACATACGAAATAC
1 AGATATGAAATAC
102554 TCGAGCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
33 16 0.37
35 27 0.63
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (34 bp):
AGATATGAAATACAAGTATTTTTTTTACACCCAT
Found at i:103361 original size:18 final size:18
Alignment explanation
Indices: 103334--103381 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
103324 TTAACCCTAT
*
103334 TTATTATTATTTATTTTA
1 TTATTTTTATTTATTTTA
* *
103352 TTATTTTTATTCCATTTTT
1 TTATTTTTATT-TATTTTA
103371 TTA-TTTTATTT
1 TTATTTTTATTT
103382 TTCCCTCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTTTTATTTATTTTA
Found at i:103382 original size:12 final size:13
Alignment explanation
Indices: 103333--103383 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
103323 TTTAACCCTA
103333 TTTATTATTATTTAT
1 TTTATT-TT-TTTAT
103348 TTTATTATTTTTAT
1 TTTATT-TTTTTAT
**
103362 TCCATTTTTTTAT
1 TTTATTTTTTTAT
103375 TTTATTTTT
1 TTTATTTTT
103384 CCCTCATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 14 0.44
14 9 0.28
15 9 0.28
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTTTTAT
Found at i:106526 original size:62 final size:62
Alignment explanation
Indices: 106450--106571 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
106440 AGGTAAACAC
* *
106450 GGTGTTTCCGGCAACCAGCCTGGAAAAGGGTATAGTTTGTTTTTTACCGTTTGTTGTGTCGA
1 GGTGTTTCCGGCAACCAGCCTGGAAAAGGGTATAGTTTGTTTTTTACCATTTGCTGTGTCGA
*
106512 GGTGTTTCCGGCAACCAGCCTGGAAAAGGGTATCGTTTGTTTTTTACCATTTGCTGTGTC
1 GGTGTTTCCGGCAACCAGCCTGGAAAAGGGTATAGTTTGTTTTTTACCATTTGCTGTGTC
106572 AACGTATTAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.17, C:0.18, G:0.28, T:0.37
Consensus pattern (62 bp):
GGTGTTTCCGGCAACCAGCCTGGAAAAGGGTATAGTTTGTTTTTTACCATTTGCTGTGTCGA
Found at i:113596 original size:54 final size:54
Alignment explanation
Indices: 113522--113721 Score: 269
Period size: 54 Copynumber: 3.7 Consensus size: 54
113512 CATCCTATGC
* * *
113522 TATTACAAGATAGACATGATTTTCAACTGCAAGAGAGGGATAGGTATCCTACAT
1 TATTACAAGACAGACATGATTTTCAACTGCAAGAGAGTGACAGGTATCCTACAT
* * * *
113576 TATTACAAGACAGACTTGATTTTCAAGTGCAAGAGAGTGACAGGTATCTTACGT
1 TATTACAAGACAGACATGATTTTCAACTGCAAGAGAGTGACAGGTATCCTACAT
* * * * *
113630 CATTACAAGACATAC--GATTTCCAACAGCAAGAGAGTGACATGTATCCTACAT
1 TATTACAAGACAGACATGATTTTCAACTGCAAGAGAGTGACAGGTATCCTACAT
*
113682 TATTACAAGACAGACATGATTTTCAAGTGCAAGAGAGTGA
1 TATTACAAGACAGACATGATTTTCAACTGCAAGAGAGTGA
113722 AAACGAAGCA
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
52 44 0.35
54 80 0.65
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
TATTACAAGACAGACATGATTTTCAACTGCAAGAGAGTGACAGGTATCCTACAT
Found at i:129284 original size:24 final size:24
Alignment explanation
Indices: 129244--129289 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
129234 TTTGTTCCCA
*
129244 TTCTTTCTTAATCTCCTTATCATG
1 TTCTTTCTTAATCTCCTCATCATG
*
129268 TTCTTT-TTTATCTTCCTCATCA
1 TTCTTTCTTAATC-TCCTCATCA
129290 AGATCAGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.15, C:0.26, G:0.02, T:0.57
Consensus pattern (24 bp):
TTCTTTCTTAATCTCCTCATCATG
Found at i:131277 original size:17 final size:17
Alignment explanation
Indices: 131237--131294 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 17
131227 TTCTCTCCCC
131237 TCCTTTTTTTTCTTT-T
1 TCCTTTTTTTTCTTTGT
* *
131253 TTCTTTTTCTTTTTTTGT
1 TCCTTTTT-TTTCTTTGT
131271 TCC-TTTTTTTCTTT-T
1 TCCTTTTTTTTCTTTGT
*
131286 TCATTTTTT
1 TCCTTTTTT
131295 CATCTTCATG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 3 0.09
16 18 0.53
17 10 0.29
18 3 0.09
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (17 bp):
TCCTTTTTTTTCTTTGT
Found at i:142611 original size:23 final size:21
Alignment explanation
Indices: 142568--142620 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 21
142558 ATTTCGCATG
142568 AAAAA-AAGAAAAAAAAAAGA
1 AAAAAGAAGAAAAAAAAAAGA
142588 AAAAAGAAGAATAAATAAAAAGA
1 AAAAAGAAGAA-AAA-AAAAAGA
* *
142611 ATAAGGAAGA
1 AAAAAGAAGA
142621 TTGAAAAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 5 0.18
21 5 0.18
22 3 0.11
23 15 0.54
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (21 bp):
AAAAAGAAGAAAAAAAAAAGA
Found at i:142614 original size:13 final size:11
Alignment explanation
Indices: 142568--142611 Score: 54
Period size: 10 Copynumber: 3.9 Consensus size: 11
142558 ATTTCGCATG
142568 AAAAAAAGAAA
1 AAAAAAAGAAA
142579 AAAAAAAG-AA
1 AAAAAAAGAAA
*
142589 AAAAGAAGAATA
1 AAAAAAAGAA-A
142601 AATAAAAAGAA
1 AA-AAAAAGAA
142612 TAAGGAAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 9 0.32
11 9 0.32
12 3 0.11
13 7 0.25
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:145322 original size:42 final size:42
Alignment explanation
Indices: 145261--145352 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
145251 TATTTCCAAA
* * *
145261 ATGCTTAAATCCTTTGGGTCATCAGTAAGTCTTCCGAGCATG
1 ATGCTTAAATACTTCGGGTCATCAGTAAGCCTTCCGAGCATG
** *
145303 ATGCTTAAATACTTCGGGTCATCTTTAAGCCTTTCGAGCATG
1 ATGCTTAAATACTTCGGGTCATCAGTAAGCCTTCCGAGCATG
*
145345 ATGATTAA
1 ATGCTTAA
145353 GTCCTCCAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
ATGCTTAAATACTTCGGGTCATCAGTAAGCCTTCCGAGCATG
Found at i:145468 original size:79 final size:79
Alignment explanation
Indices: 145328--145479 Score: 259
Period size: 79 Copynumber: 1.9 Consensus size: 79
145318 GGGTCATCTT
*
145328 TAAGCCTTTCGAGCATGATGATTAAGTCCTCCAGGCAATCTAAAGCCTTCACCGAAGAGTAGTGA
1 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCAGGCAATCTAAAGCCTTCACCGAAGAGTAGTGA
145393 AACAAATCCATCAG
66 AACAAATCCATCAG
* * *
145407 TAAGTCTTCCGAGCATGATGATTAAGTCCTCCGGGCAATCTTAAGCCTTCACCGAAGAGTAGTGA
1 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCAGGCAATCTAAAGCCTTCACCGAAGAGTAGTGA
*
145472 AGCAAATC
66 AACAAATC
145480 AATCTTAAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (79 bp):
TAAGCCTTCCGAGCATGATGATTAAGTCCTCCAGGCAATCTAAAGCCTTCACCGAAGAGTAGTGA
AACAAATCCATCAG
Found at i:145493 original size:37 final size:37
Alignment explanation
Indices: 145442--145516 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
145432 GTCCTCCGGG
* *
145442 CAATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
1 CAATCTTAAACCTTCACCAAAGAGTAGTGAAGCAAAT
*
145479 CAATCTTAAACCTTCACCAAAGAGTATTGAAGCAAAT
1 CAATCTTAAACCTTCACCAAAGAGTAGTGAAGCAAAT
145516 C
1 C
145517 CAAGATCTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (37 bp):
CAATCTTAAACCTTCACCAAAGAGTAGTGAAGCAAAT
Found at i:145729 original size:111 final size:112
Alignment explanation
Indices: 145519--146364 Score: 1285
Period size: 111 Copynumber: 7.7 Consensus size: 112
145509 AGCAAATCCA
* *
145519 AGATCTGATATTCCCTCAGAAGAAGCGGAATAGATCCCTCTTTTTCAAGATTTGATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
*
145584 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCCC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
* * *
145631 AGATCTGATATTCCCTCAGAAGAAGCAGAACAGATCCCTCTTTTTCAATATTTGATATT-CCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
*
145695 GTGACAGCGGAACAAGTGTTGCCACGATTCAATTGATCAACTCTCAC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
* *
145742 AGATCTGATATTCCCTCAGAAGAAGCGGAACA-ATCTCGCTTTTTCAAGATTTGATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
**
145806 GTGACAGCGGAACAAGTCTTGCCATAATTCAATTGATCAACTCTCAC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
* *
145853 AGATATGATATTCCCTCA-AA-AAGCGGAACATATCTCTCTTTTTCAAGATTTGATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
* *
145916 GTGACAGTGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCCC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
* * * *
145963 ATATCTGATATTCCCTCAGAAGAAACGAAACATATCCCTCTTTTTCAAGATTTAATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
*
146028 GTGA-AACGGAACAAGTCTTGCCACG-----A-TGATCAACTCTCAC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
* *
146068 AGATCTGATATTCCCTCAGAAGAA---G--CAGATCTCTCTTTTTCAAGATTTGATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
*
146128 GTGACAGCGGAACAAGTCTTTCCACGATTCAATTGATCAACTCTCAC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
* * *
146175 AGATTTGATATTCCCTCAGAAGAAG-GAAACATATCTCTCTTTTTCAAGATTTGATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
* * * *
146239 GTGACAGTGGAACAAGTCTTGCCACGATTCAATTAATTAACTTTCAC
66 GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
146286 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
1 AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
* *
146351 TTGGCAGCGGAACA
66 GTGACAGCGGAACA
146365 TATTCCTCAT
Statistics
Matches: 670, Mismatches: 48, Indels: 32
0.89 0.06 0.04
Matches are distributed among these distances:
100 36 0.05
101 19 0.03
105 36 0.05
106 2 0.00
107 37 0.06
109 10 0.01
110 115 0.17
111 268 0.40
112 147 0.22
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (112 bp):
AGATCTGATATTCCCTCAGAAGAAGCGGAACATATCCCTCTTTTTCAAGATTTGATATTCCCTGA
GTGACAGCGGAACAAGTCTTGCCACGATTCAATTGATCAACTCTCAC
Found at i:147563 original size:2 final size:2
Alignment explanation
Indices: 147556--147610 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
147546 GTTATAATAG
147556 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
147598 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
147611 GGGATCACCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:151147 original size:51 final size:51
Alignment explanation
Indices: 151082--151708 Score: 674
Period size: 51 Copynumber: 12.0 Consensus size: 51
151072 TGAAGCGGAA
* * *
151082 GAAGATGTTTGAGTTCCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTT
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * * *
151133 GAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCTGTGT
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * * * *
151184 GAAGTTATTAGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCAAACCCGTTT
1 GAAGATGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTT
*
151235 AAAGAAGATGTCCGAGTTCTATACTCCCTAGA-AAAGAGGGAGCGAACCCGTTT
1 ---GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * **
151288 GAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGC
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * * *
151339 GAAGTTATTGGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCGAACCCGTTT
1 GAAGATGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTT
* *
151390 GAAGAAGATGTCCGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCGAA-CCGTTT
1 ---GAAGATGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTT
* *
151443 GAAGAAGATGTTCGAGTTCCATACTCCCT-GAGGAAAGAGGGAGCGAACCAGTTT
1 ---GAAGATGTTCGAGTTCTATACTCCCTAGA-GAAAGAGGGAGCGAACCCGTTT
*
151497 GAAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACACGTTT
1 ---GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* *
151551 GAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * **
151602 GAAAAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGTAA
1 G---AAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * *
151656 GAAGACAATTTTTTGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCGAACCCGT
1 GAAG---A-TGTTCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCGT
151709 AAGAAGAAGA
Statistics
Matches: 501, Mismatches: 54, Indels: 38
0.84 0.09 0.06
Matches are distributed among these distances:
50 30 0.06
51 198 0.40
52 1 0.00
53 68 0.14
54 161 0.32
55 43 0.09
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (51 bp):
GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
Found at i:151363 original size:155 final size:157
Alignment explanation
Indices: 151080--151722 Score: 831
Period size: 155 Copynumber: 4.1 Consensus size: 157
151070 AGTGAAGCGG
** *
151080 AAGAAGATGTTTGAGTTCCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTGAAGATGTCCGA
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCCGA
* *
151145 GTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCTGTG-TGAAGTTATTAGAGTTCTATACTTCC
66 GTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAAGAAGTTATTAGAGTTCTATACTTCC
*
151209 TGAAGAAAGAGGGAGCAAACCCGTTTA
131 TGAAGAAAGAGGGAGCGAACCCGTTTA
*
151236 AAGAAGATGTCCGAGTTCTATACTCCCTAGA-AAAGAGGGAGCGAACCCGTTTGAAGATGTCCGA
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCCGA
* *
151300 GTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTG-CGAAGTTATTGGAGTTCTATACTTCC
66 GTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAAGAAGTTATTAGAGTTCTATACTTCC
*
151364 TGAAGAAAGAGGGAGCGAACCCGTTTG
131 TGAAGAAAGAGGGAGCGAACCCGTTTA
* *
151391 AAGAAGATGTCCGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCGAA-CCGTTTGAAGAAGATGT
1 AAGAAGATGTCCGAGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTT---GAAGATGT
* * * * *
151454 TCGAGTTCCATACTCCCT-GAGGAAAGAGGGAGCGAACCAGTTTGAAGAAGATGTTCGAGTTCTA
62 CCGAGTTCCATACTCCCTAGA-GAAAGAGGGAGCGAACCCG--TGAAGAAGTTATTAGAGTTCTA
* *
151518 TACTCCCT-AGAGAAAGAGGGAGCGAACACGTTT-
124 TACTTCCTGA-AGAAAGAGGGAGCGAACCCGTTTA
*
151551 --GAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAAAAGATGTT
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG---AAGATGTC
* * * * * *
151614 CGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGACAATTTTTTGAGTTCTAT
63 CGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGT--GAAGA-AGTTATTAGAGTTCTAT
*
151679 ACTTCCTGAAGAAAGAGGGAGCGAACCCG-TAA
125 ACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTA
151711 GAAGAAGATGTC
1 -AAGAAGATGTC
151723 GTGTCTCATA
Statistics
Matches: 432, Mismatches: 31, Indels: 41
0.86 0.06 0.08
Matches are distributed among these distances:
154 1 0.00
155 152 0.35
156 43 0.10
157 3 0.01
158 83 0.19
159 54 0.12
160 42 0.10
161 45 0.10
163 9 0.02
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (157 bp):
AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCCGA
GTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAAGAAGTTATTAGAGTTCTATACTTCC
TGAAGAAAGAGGGAGCGAACCCGTTTA
Found at i:151425 original size:105 final size:104
Alignment explanation
Indices: 151079--151722 Score: 669
Period size: 105 Copynumber: 6.1 Consensus size: 104
151069 TAGTGAAGCG
** * * **
151079 GAAGAAGATGTTTGAGTTCCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTGAAGATGTCCG
1 GAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAGAAGATGTCCG
* *
151144 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCTGTGT
66 AGTTCCATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTT
** * * * *
151184 GAAG-TTAT-T-AGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCAAACCCGTTTAAAGAAGATG
1 GAAGAAGATGTCCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCG--T-GAGAAGATG
*
151245 TCCGAGTTCTATACTCCCT-AGAAAAGAGGGAGCGAACCCGTTT
62 TCCGAGTTCCATACTCCCTAAG-AAAGAGGGAGCGAACCCGTTT
* * * * **
151288 ---GAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGCGAAGTTATTGG
1 GAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAGAAGATGTCCG
* *
151350 AGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTT
66 AGTTCCATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTT
*
151390 GAAGAAGATGTCCGAGTTCTATACTTCCT-GAAGAAAGAGGGAGCGAA-CCGTTTGAAGAAGATG
1 GAAGAAGATGTCCGAGTTCTATACTCCCTAG-AGAAAGAGGGAGCGAACCCG--TG-AGAAGATG
* * *
151453 TTCGAGTTCCATACTCCCTGAGGAAAGAGGGAGCGAACCAGTTT
62 TCCGAGTTCCATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTT
* * **
151497 GAAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACACGTTTGAAGATGTCCG
1 GAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAGAAGATGTCCG
151562 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
66 AGTTCCATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTT
* * * * * *
151602 GAAAAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGACAATTT
1 GAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAGAAG---A-TG
** * * **
151667 TTTGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTAA
62 TCCGAGTTCCATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTT
151711 GAAGAAGATGTC
1 GAAGAAGATGTC
151723 GTGTCTCATA
Statistics
Matches: 455, Mismatches: 58, Indels: 48
0.81 0.10 0.09
Matches are distributed among these distances:
101 23 0.05
102 56 0.12
103 6 0.01
104 60 0.13
105 168 0.37
106 3 0.01
107 87 0.19
108 4 0.01
109 47 0.10
110 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (104 bp):
GAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAGAAGATGTCCG
AGTTCCATACTCCCTAAGAAAGAGGGAGCGAACCCGTTT
Found at i:151787 original size:55 final size:55
Alignment explanation
Indices: 151725--152079 Score: 556
Period size: 55 Copynumber: 6.5 Consensus size: 55
151715 AAGATGTCGT
* *
151725 GTCTCATACTCTATGAAAGAATAAGGAACATACACGATTATTGAAGATTGTTCGA
1 GTCTCATACTCTCTGAAAGAATAGGGAACATACACGATTATTGAAGATTGTTCGA
*
151780 GTCTCATACTCTCTG-AAGAAATAGGGAACATACGCGATTATTGAAGATTGTTCGA
1 GTCTCATACTCTCTGAAAG-AATAGGGAACATACACGATTATTGAAGATTGTTCGA
151835 GTCTCATACTCTCTGAAAGAATAGGGAACATACACGATTATTGAAGATTGTTCGA
1 GTCTCATACTCTCTGAAAGAATAGGGAACATACACGATTATTGAAGATTGTTCGA
* *
151890 GTCTCATACTCTCTGAAGGAATAGGGAACATACA--ATTATTTAAGATTGTTCGA
1 GTCTCATACTCTCTGAAAGAATAGGGAACATACACGATTATTGAAGATTGTTCGA
* * *
151943 GTCTCATACTCTCTGAAAGAATAGGGAGCAGACACTATTATTGAAGATTGTTCGA
1 GTCTCATACTCTCTGAAAGAATAGGGAACATACACGATTATTGAAGATTGTTCGA
* * *
151998 GTCTTATACTCTCT-AAAGAAATAGGGAGCAGACACGATTATTGAAGATTGTTCGA
1 GTCTCATACTCTCTGAAAG-AATAGGGAACATACACGATTATTGAAGATTGTTCGA
*
152053 GTCTCATACTCTCTGAAGGAATAGGGA
1 GTCTCATACTCTCTGAAAGAATAGGGA
152080 GTGAACATGT
Statistics
Matches: 280, Mismatches: 14, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
53 49 0.17
54 7 0.03
55 218 0.78
56 6 0.02
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (55 bp):
GTCTCATACTCTCTGAAAGAATAGGGAACATACACGATTATTGAAGATTGTTCGA
Found at i:151943 original size:163 final size:164
Alignment explanation
Indices: 151725--152079 Score: 563
Period size: 163 Copynumber: 2.2 Consensus size: 164
151715 AAGATGTCGT
* * *
151725 GTCTCATACTCTATGAAAGAATAAGGAACATACACGATTATTGAAGATTGTTCGAGTCTCATACT
1 GTCTCATACTCTCTGAAGGAATAGGGAACATACAC-ATTATTGAAGATTGTTCGAGTCTCATACT
* *
151790 CTCTG-AAGAAATAGGGAACATACGCGATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAAG
65 CTCTGAAAG-AATAGGGAACAGACACGATTATTGAAGATTGTTCGAGTCTCATACTCTCT-AAAG
*
151854 -AATAGGGAACATACACGATTATTGAAGATTGTTCGA
128 AAATAGGGAACAGACACGATTATTGAAGATTGTTCGA
*
151890 GTCTCATACTCTCTGAAGGAATAGGGAACATACA-ATTATTTAAGATTGTTCGAGTCTCATACTC
1 GTCTCATACTCTCTGAAGGAATAGGGAACATACACATTATTGAAGATTGTTCGAGTCTCATACTC
* * *
151954 TCTGAAAGAATAGGGAGCAGACACTATTATTGAAGATTGTTCGAGTCTTATACTCTCTAAAGAAA
66 TCTGAAAGAATAGGGAACAGACACGATTATTGAAGATTGTTCGAGTCTCATACTCTCTAAAGAAA
*
152019 TAGGGAGCAGACACGATTATTGAAGATTGTTCGA
131 TAGGGAACAGACACGATTATTGAAGATTGTTCGA
152053 GTCTCATACTCTCTGAAGGAATAGGGA
1 GTCTCATACTCTCTGAAGGAATAGGGA
152080 GTGAACATGT
Statistics
Matches: 177, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
162 4 0.02
163 139 0.79
164 3 0.02
165 31 0.18
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (164 bp):
GTCTCATACTCTCTGAAGGAATAGGGAACATACACATTATTGAAGATTGTTCGAGTCTCATACTC
TCTGAAAGAATAGGGAACAGACACGATTATTGAAGATTGTTCGAGTCTCATACTCTCTAAAGAAA
TAGGGAACAGACACGATTATTGAAGATTGTTCGA
Found at i:162515 original size:88 final size:89
Alignment explanation
Indices: 162411--162753 Score: 519
Period size: 88 Copynumber: 3.8 Consensus size: 89
162401 TTCCGTTTCT
* * * * *
162411 TCTGATGGGAATATCAAATCATGGA-AAAAGAGACATGTTCCACTTACTCTGAAGGGAATGTCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
162475 ATCTGGAAGACTTGTTCCACTTAC
66 ATCTGGAAGACTTGTTCCACTTAC
162499 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
162564 ATCTTGGAGAATAGAGACTTGTTCCACTTAC
66 ATC-T-G-G---A-AGACTTGTTCCACTTAC
*
162595 TCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
* *
162660 ATATGGCAGAC-TGTTCCACTTAC
66 ATCTGGAAGACTTGTTCCACTTAC
* *
162683 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTTCACTTACTCTGAAGGGAATATCAA
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
162748 ATCTGG
66 ATCTGG
162754 GAGAGTTGAT
Statistics
Matches: 235, Mismatches: 12, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
88 102 0.43
89 43 0.18
90 1 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 1 0.00
95 2 0.01
96 83 0.35
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (89 bp):
TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
ATCTGGAAGACTTGTTCCACTTAC
Found at i:162547 original size:48 final size:48
Alignment explanation
Indices: 162482--162757 Score: 406
Period size: 48 Copynumber: 5.9 Consensus size: 48
162472 CAGATCTGGA
*
162482 AGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
1 AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
* *
162530 AGACCTGTTCCACTTACTCTGAAGGGAATATCAGATCTTGGAGAATAG
1 AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
* *
162578 AGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAG
1 AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
* * *
162626 AGACCTGTTCCACTTACTCTGAAGGGAATATCAGAT-AT---G--G-C
1 AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
162667 AGA-CTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
1 AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
* *
162714 AGACCTGTTTCACTTACTCTGAAGGGAATATCAAATCTGGGAGA
1 AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGA
162758 GTTGATCCAT
Statistics
Matches: 204, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
40 31 0.15
41 4 0.02
42 1 0.00
44 2 0.01
46 1 0.00
47 4 0.02
48 161 0.79
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (48 bp):
AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
Found at i:162677 original size:184 final size:184
Alignment explanation
Indices: 162368--162757 Score: 588
Period size: 184 Copynumber: 2.1 Consensus size: 184
162358 GCTATCACTC
* * * * *
162368 AGGGAATATCAAACCTTGGAAAAAAGAGATATGTTCCGTTTCTTCTGATGGGAATATCAAATCAT
1 AGGGAATATCAAATCTTGGAGAAAAGAGATATGTTCCCTTACTTCTGAAGGGAATATCAAATCAT
* *
162433 GGAAAAAGAGACATGTTCCACTTACTCTGAAGGGAATGTCAGATCTGGAAGACTTGTTCCACTTA
66 GGAAAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAGATATGGAAGACTTGTTCCACTTA
162498 CTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
131 CTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* *
162552 AGGGAATATCAGATCTTGGAGAATAGAGACT-TGTTCCACTTAC-TCTGAAGGGAATATCAAATC
1 AGGGAATATCAAATCTTGGAGAAAAGAGA-TATGTTCC-CTTACTTCTGAAGGGAATATCAAATC
* * * * *
162615 TTTGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAGATATGGCAGAC-TGTTCCAC
64 ATGGA-AAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAGATATGGAAGACTTGTTCCAC
*
162679 TTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTTCACTTACTCTGA
128 TTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
*
162736 AGGGAATATCAAATCTGGGAGA
1 AGGGAATATCAAATCTTGGAGA
162758 GTTGATCCAT
Statistics
Matches: 186, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
184 137 0.74
185 49 0.26
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (184 bp):
AGGGAATATCAAATCTTGGAGAAAAGAGATATGTTCCCTTACTTCTGAAGGGAATATCAAATCAT
GGAAAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAGATATGGAAGACTTGTTCCACTTA
CTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
Found at i:162684 original size:136 final size:135
Alignment explanation
Indices: 162411--162751 Score: 426
Period size: 136 Copynumber: 2.5 Consensus size: 135
162401 TTCCGTTTCT
* * * *
162411 TCTGATGGGAATATCAAATCATGGA-AAAAGAGACATGTTCCACTTACTCTGAAGGGAATGTCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAA
* * *
162475 ATC-TGGAAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTT
66 ATCTTGGAAGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCAT-G-G-AGACAGACCTGTT
162539 CCACTTAC
128 CCACTTAC
* * *
162547 TCTGAAGGGAATATCAGATCTTGGAGAATAGAGACTTGTTCCACTTACTCTGAAGGGAATATCAA
1 TCTGAAGGGAATATCAAATCTTGGAGAAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAA
*
162612 ATCTTTGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAGAT-AT-G-G-CAGA-CT
66 ATC-TT--G--GA-AGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCATGGAGACAGACCT
162672 GTTCCACTTAC
125 GTTCCACTTAC
* * *
162683 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTTCACTTACTCTGAAGGGAATATCAA
1 TCTGAAGGGAATATCAAATCTTGGAGAAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAA
162748 ATCT
66 ATCT
162752 GGGAGAGTTG
Statistics
Matches: 182, Mismatches: 15, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
135 1 0.01
136 99 0.54
137 41 0.23
138 1 0.01
139 1 0.01
140 1 0.01
141 1 0.01
143 3 0.02
144 34 0.19
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (135 bp):
TCTGAAGGGAATATCAAATCTTGGAGAAAAGAGACATGTTCCACTTACTCTGAAGGGAATATCAA
ATCTTGGAAGACCTGTTCCACTTACTCTGAAGGGAATATCAAATCATGGAGACAGACCTGTTCCA
CTTAC
Found at i:175701 original size:2 final size:2
Alignment explanation
Indices: 175694--175720 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
175684 AAATTACATG
175694 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
175721 GCATGGAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:177358 original size:138 final size:138
Alignment explanation
Indices: 177019--177498 Score: 624
Period size: 138 Copynumber: 3.5 Consensus size: 138
177009 TCGACAGAGC
* * * * *
177019 TGCAAAGAGCGAGTTCGTTCACTGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCAAG
1 TGCAAAGAGTGAATTTGTTTACGGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCAAG
* * * * * * *
177084 ACCTAGATGATGTGAGCCACCATTCTACCCACGATTCATCTAAAAAGATCTGGAAAAACAATGAT
66 ATCAAGATGATGTGAGCCACCATTCTACTCACGAGTCATCTCAAAAGATCTGCAAAGACAATGAT
* *
177149 GTTGGATT
131 GATGGAGT
* * *
177157 TGC-AA-AGTGCAAATTATTTACGGTATTGAACAGATGAATGACTTCACTCCTGGATTGTCTCAA
1 TGCAAAGAGTG-AATTTGTTTACGGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCAA
* * * *
177220 GATCGAGATTATGTGAACCACCATTCTACTCACGAGTCATCTC-AAAGAACCTGCAAAGACAATG
65 GATCAAGATGATGTGAGCCACCATTCTACTCACGAGTCATCTCAAAAG-ATCTGCAAAGACAATG
* *
177284 ATGACGGGGT
129 ATGATGGAGT
* *
177294 GGCAAAGAGTGAATTTGTTTACGGTATTGAACAAATGAATGACTTGACTCCTGGATTGTCTCAAG
1 TGCAAAGAGTGAATTTGTTTACGGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCAAG
* * * *
177359 ATCAAGATGATGTTAGCCACAATTCTACTCACGAGTCATCTCAAAATATTTGCAAAGACAATGAT
66 ATCAAGATGATGTGAGCCACCATTCTACTCACGAGTCATCTCAAAAGATCTGCAAAGACAATGAT
*
177424 GGTGGAGT
131 GATGGAGT
* * *
177432 TGCAAAGATTGAATTTGTCTACGGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCTAG
1 TGCAAAGAGTGAATTTGTTTACGGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCAAG
177497 AT
66 AT
177499 GAGTCATCTC
Statistics
Matches: 294, Mismatches: 43, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
136 7 0.02
137 105 0.36
138 175 0.60
139 7 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (138 bp):
TGCAAAGAGTGAATTTGTTTACGGTATTGAACAGATGAATGACTTGACTCCTGGATTGTCTCAAG
ATCAAGATGATGTGAGCCACCATTCTACTCACGAGTCATCTCAAAAGATCTGCAAAGACAATGAT
GATGGAGT
Found at i:179282 original size:3 final size:3
Alignment explanation
Indices: 179274--179305 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
179264 ATAAGGAACT
*
179274 GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
179306 TAAGGAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:179938 original size:215 final size:215
Alignment explanation
Indices: 179617--180046 Score: 860
Period size: 215 Copynumber: 2.0 Consensus size: 215
179607 GTATCCGACC
179617 CGGATCCGAGTCCGATGTGTCACATCAACTTTTAAACCTTTACTTGTTCAAAATAATGAAAAATC
1 CGGATCCGAGTCCGATGTGTCACATCAACTTTTAAACCTTTACTTGTTCAAAATAATGAAAAATC
179682 CTCGTTAAAGAAAACTTCATATTATTTCAAAATAAAAGTTTTCACACTTATCAGAGCATATACAA
66 CTCGTTAAAGAAAACTTCATATTATTTCAAAATAAAAGTTTTCACACTTATCAGAGCATATACAA
179747 TTCAAATTGTTTATATTACATGCCAACTACATCTAAAAGAATAAAATACATATCAAACATTTCTT
131 TTCAAATTGTTTATATTACATGCCAACTACATCTAAAAGAATAAAATACATATCAAACATTTCTT
179812 TTCTGATTTGAACTTTGTAA
196 TTCTGATTTGAACTTTGTAA
179832 CGGATCCGAGTCCGATGTGTCACATCAACTTTTAAACCTTTACTTGTTCAAAATAATGAAAAATC
1 CGGATCCGAGTCCGATGTGTCACATCAACTTTTAAACCTTTACTTGTTCAAAATAATGAAAAATC
179897 CTCGTTAAAGAAAACTTCATATTATTTCAAAATAAAAGTTTTCACACTTATCAGAGCATATACAA
66 CTCGTTAAAGAAAACTTCATATTATTTCAAAATAAAAGTTTTCACACTTATCAGAGCATATACAA
179962 TTCAAATTGTTTATATTACATGCCAACTACATCTAAAAGAATAAAATACATATCAAACATTTCTT
131 TTCAAATTGTTTATATTACATGCCAACTACATCTAAAAGAATAAAATACATATCAAACATTTCTT
180027 TTCTGATTTGAACTTTGTAA
196 TTCTGATTTGAACTTTGTAA
180047 GGAAGATGCT
Statistics
Matches: 215, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 215 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (215 bp):
CGGATCCGAGTCCGATGTGTCACATCAACTTTTAAACCTTTACTTGTTCAAAATAATGAAAAATC
CTCGTTAAAGAAAACTTCATATTATTTCAAAATAAAAGTTTTCACACTTATCAGAGCATATACAA
TTCAAATTGTTTATATTACATGCCAACTACATCTAAAAGAATAAAATACATATCAAACATTTCTT
TTCTGATTTGAACTTTGTAA
Found at i:180535 original size:18 final size:17
Alignment explanation
Indices: 180500--180545 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
180490 CCATAACACA
180500 CATATATCATATCATAT
1 CATATATCATATCATAT
180517 CATAT-TCATATTACATAT
1 CATATATCATA-T-CATAT
180535 CATATAT-ATAT
1 CATATATCATAT
180546 ATTACAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.19
17 7 0.27
18 13 0.50
19 1 0.04
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.43
Consensus pattern (17 bp):
CATATATCATATCATAT
Found at i:180547 original size:20 final size:23
Alignment explanation
Indices: 180507--180551 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
180497 ACACATATAT
180507 CATATCATATCATATTCATATTA
1 CATATCATATCATATTCATATTA
180530 CATATCATAT-ATA-T-ATATTA
1 CATATCATATCATATTCATATTA
180550 CA
1 CA
180552 AACGTTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 1 0.05
22 3 0.14
23 10 0.45
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (23 bp):
CATATCATATCATATTCATATTA
Found at i:180689 original size:23 final size:23
Alignment explanation
Indices: 180671--180723 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
180661 AATGCACCAA
180671 AGTGCCACGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTGCACCGT
**
180694 AGTGCCGTGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTGCACCGT
180717 AGTGCCA
1 AGTGCCA
180724 TATAAGATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (23 bp):
AGTGCCACGTAGAATTGCACCGT
Found at i:180970 original size:21 final size:21
Alignment explanation
Indices: 180946--181001 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
180936 CATTCACATA
180946 TACACATAGTCTCATAGTTCT
1 TACACATAGTCTCATAGTTCT
180967 TACACATAGTCTCATAGTTCT
1 TACACATAGTCTCATAGTTCT
*
180988 TTCACATAG-CTCAT
1 TACACATAGTCTCAT
181002 TGTCATATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (21 bp):
TACACATAGTCTCATAGTTCT
Found at i:182346 original size:24 final size:24
Alignment explanation
Indices: 182314--182370 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
182304 TACACAATGT
182314 ATCGATGCATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
182338 ATCGATGCATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
182362 ATCGATGCA
1 ATCGATGCA
182371 CTATCTATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (24 bp):
ATCGATGCATCCCTTAACGTGTGC
Found at i:188315 original size:8 final size:8
Alignment explanation
Indices: 188302--188348 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
188292 CTCAATCCTT
*
188302 TTTATTTC
1 TTTATTCC
188310 TTTATTCC
1 TTTATTCC
* *
188318 ATTATTTC
1 TTTATTCC
188326 TTTATTCC
1 TTTATTCC
*
188334 ATTATTCC
1 TTTATTCC
188342 TTTATTC
1 TTTATTC
188349 ATTCCAAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTATTCC
Found at i:188324 original size:16 final size:16
Alignment explanation
Indices: 188303--188348 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
188293 TCAATCCTTT
188303 TTATTTCTTTATTCCA
1 TTATTTCTTTATTCCA
188319 TTATTTCTTTATTCCA
1 TTATTTCTTTATTCCA
*
188335 TTATTCCTTTATTC
1 TTATTTCTTTATTC
188349 ATTCCAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTTCTTTATTCCA
Found at i:188338 original size:24 final size:24
Alignment explanation
Indices: 188302--188347 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
188292 CTCAATCCTT
* *
188302 TTTATTTCTTTATTCCATTATTTC
1 TTTATTCCATTATTCCATTATTTC
*
188326 TTTATTCCATTATTCCTTTATT
1 TTTATTCCATTATTCCATTATT
188348 CATTCCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTATTCCATTATTCCATTATTTC
Found at i:189990 original size:23 final size:24
Alignment explanation
Indices: 189950--190002 Score: 90
Period size: 23 Copynumber: 2.2 Consensus size: 24
189940 CCACTAGGGG
189950 CTATGAAATTTGTCCCGAAGGACCA
1 CTATGAAA-TTGTCCCGAAGGACCA
189975 CTATGAAA-TGTCCCGAAGGACCA
1 CTATGAAATTGTCCCGAAGGACCA
189998 CTATG
1 CTATG
190003 TCCCGAAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 20 0.71
25 8 0.29
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (24 bp):
CTATGAAATTGTCCCGAAGGACCA
Found at i:192109 original size:2 final size:2
Alignment explanation
Indices: 192102--192133 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
192092 TTCATATTAC
192102 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
192134 TACATACGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:192302 original size:23 final size:23
Alignment explanation
Indices: 192249--192305 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
192239 CTCGTATAAA
*
192249 TGCACCGAAGTACCACGTAGAAT
1 TGCACCGTAGTACCACGTAGAAT
* *
192272 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGTAGTACCACGTAGAAT
192295 TGCACCGTAGT
1 TGCACCGTAGT
192306 TCCATATAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCACCGTAGTACCACGTAGAAT
Found at i:193015 original size:22 final size:21
Alignment explanation
Indices: 192964--193016 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
192954 TGTACTCCTT
192964 TTCCTATAATTGATACATTAA
1 TTCCTATAATTGATACATTAA
* * **
192985 TGTCATATAATTTATATTTCTAA
1 T-TCCTATAATTGATACAT-TAA
193008 TTCCTATAA
1 TTCCTATAA
193017 CATCCTCACA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.04
22 20 0.80
23 4 0.16
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (21 bp):
TTCCTATAATTGATACATTAA
Found at i:193848 original size:22 final size:22
Alignment explanation
Indices: 193823--193871 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
193813 AAAGAAAAGC
*
193823 TATTTTCATCTTTTAATG-AGG
1 TATTTTCATCTCTTAATGAAGG
193844 TTATTTTCATCTCTTAATGAAGG
1 -TATTTTCATCTCTTAATGAAGG
193867 TATTT
1 TATTT
193872 ATCGATGCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.53
Consensus pattern (22 bp):
TATTTTCATCTCTTAATGAAGG
Found at i:193927 original size:24 final size:24
Alignment explanation
Indices: 193892--194068 Score: 300
Period size: 24 Copynumber: 7.4 Consensus size: 24
193882 TACACAATGT
*
193892 ATCGATGTATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
*
193916 ATCGATGCATCCCTTAAAGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
*
193940 ATCGATGCATCCCTTAACGTGTAC
1 ATCGATGCATCCCTTAACGTGTGC
*
193964 ATCGATCCATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
*
193988 ATCAATGCATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
*
194012 ATCGTTGCATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
194036 ATCGATGCATCCCTTAACGTGTGC
1 ATCGATGCATCCCTTAACGTGTGC
194060 ATCGATGCA
1 ATCGATGCA
194069 CTATCTATGC
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 142 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (24 bp):
ATCGATGCATCCCTTAACGTGTGC
Found at i:201322 original size:21 final size:21
Alignment explanation
Indices: 201298--201339 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
201288 AATCAATTTT
*
201298 TCAAAAGCATGCACCGATGCA
1 TCAAAACCATGCACCGATGCA
* *
201319 TCAATACCATGCATCGATGCA
1 TCAAAACCATGCACCGATGCA
201340 CTCTGATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.19
Consensus pattern (21 bp):
TCAAAACCATGCACCGATGCA
Found at i:201449 original size:17 final size:19
Alignment explanation
Indices: 201421--201469 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
201411 ATTTTTCAAA
201421 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
201439 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
201458 CACCGATGCACT
1 CATCGATGCACT
201470 AGGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:207272 original size:44 final size:42
Alignment explanation
Indices: 207217--207339 Score: 102
Period size: 44 Copynumber: 2.8 Consensus size: 42
207207 TTGTGCTTAA
* * *
207217 TGCACCGATGCACTTAACAATGCATCGATGCATCCCTTTGTATG
1 TGCATCGATGCAC-AAACAATGCATCGATGCATCCC-TTGAATG
* ** * * * *
207261 TGTATCGATGCATCCGCATAATGCACCGGTGCATGCCTTGAATG
1 TGCATCGATGCA--CAAACAATGCATCGATGCATCCCTTGAATG
*
207305 TGCATCGATGCACAAGACCATGCATCGATGCATCC
1 TGCATCGATGCACAA-ACAATGCATCGATGCATCC
207340 GTCGGGTTTT
Statistics
Matches: 59, Mismatches: 17, Indels: 7
0.71 0.20 0.08
Matches are distributed among these distances:
42 1 0.02
43 14 0.24
44 27 0.46
45 16 0.27
46 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (42 bp):
TGCATCGATGCACAAACAATGCATCGATGCATCCCTTGAATG
Found at i:209858 original size:21 final size:21
Alignment explanation
Indices: 209834--209879 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
209824 AATCAATTTT
*
209834 TCAAAAGCATGCACCGATGCA
1 TCAAAACCATGCACCGATGCA
* *
209855 TCAATACCATGCATCGATGCA
1 TCAAAACCATGCACCGATGCA
209876 TCAA
1 TCAA
209880 TGAATAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.28, G:0.15, T:0.20
Consensus pattern (21 bp):
TCAAAACCATGCACCGATGCA
Found at i:209880 original size:21 final size:21
Alignment explanation
Indices: 209841--209880 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
209831 TTTTCAAAAG
209841 CATGCACCGATGCATCAATAC
1 CATGCACCGATGCATCAATAC
*
209862 CATGCATCGATGCATCAAT
1 CATGCACCGATGCATCAAT
209881 GAATAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.23
Consensus pattern (21 bp):
CATGCACCGATGCATCAATAC
Found at i:209930 original size:19 final size:19
Alignment explanation
Indices: 209906--209944 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
209896 TCGAATGCAT
209906 TTCATGCACCGATGCACTC
1 TTCATGCACCGATGCACTC
* *
209925 TTCATGCATCGATGTACTC
1 TTCATGCACCGATGCACTC
209944 T
1 T
209945 GATTTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (19 bp):
TTCATGCACCGATGCACTC
Found at i:209968 original size:64 final size:65
Alignment explanation
Indices: 209886--210069 Score: 207
Period size: 64 Copynumber: 2.9 Consensus size: 65
209876 TCAATGAATA
* * * *
209886 AATTGAAACATCGAATGCATTTCATGCACCGATGCACTCTTCATGCATCGATGTACTC-TG-ATT
1 AATTAAAACATCGAATGCATTTCATGCATCGATGCACTCTTCATGCATCGATGCAC-CAGGCATT
209949 T
65 T
* ***
209950 AATTAAAACATCGAATGCATTTGATGCATCGATGCACAAGTCATGCATCGATGCACCAGGCTATT
1 AATTAAAACATCGAATGCATTTCATGCATCGATGCACTCTTCATGCATCGATGCACCAGGC-ATT
210015 T
65 T
* * *
210016 --TTCAAACATCGAATGCACTTCATGCATCGATGCACTCTT-AGTGCACCGATGCAC
1 AATTAAAACATCGAATGCATTTCATGCATCGATGCACTCTTCA-TGCATCGATGCAC
210070 TAGGAGTCCA
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
63 2 0.02
64 95 0.94
66 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (65 bp):
AATTAAAACATCGAATGCATTTCATGCATCGATGCACTCTTCATGCATCGATGCACCAGGCATTT
Found at i:210050 original size:17 final size:19
Alignment explanation
Indices: 210022--210070 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
210012 ATTTTTCAAA
210022 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
210040 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
210059 CACCGATGCACT
1 CATCGATGCACT
210071 AGGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:222978 original size:216 final size:216
Alignment explanation
Indices: 222598--223508 Score: 1453
Period size: 216 Copynumber: 4.3 Consensus size: 216
222588 ATTTAAGAAT
* *
222598 TAAATTGAACAAATATGAAATTACAAATAAAGATTTAAATAAATTAAAC-ACACACAATGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
*
222662 GGATCAAATTGAAGA-AAATTTAAATTGTGAGGTTGAAATTAATAC-AAAAAGTACTAAAGTATA
66 GGATCAAATCGAA-ATAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAAGTATA
* * * *
222725 CCCATTTAAAAATTTATGGGCCAATTAAAATATAGAATTAAGTAAAAAATATGGATCAATTTCAT
130 CCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAAAAGTATGGATCAATTTCAT
*
222790 ATGCAAAAAAAATTTGGAGGAC
195 ATGCAAATAAAATTTGGAGGAC
222812 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
*
222877 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAAGTATAC
66 GGATCAAATCGAAATAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAAGTATAC
* *
222942 CCATTTAAAAATTTATGGGCCAATTAAAAAATAGAATTAAGTAAAAAGTATGGATCAATTTCATA
131 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAAAAGTATGGATCAATTTCATA
223007 TGCAAATAAAATTTGGAGGAC
196 TGCAAATAAAATTTGGAGGAC
* *
223028 TAAATTGAACAAATATGAAATTATAAATAAAAATTTAAATTAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* *
223093 GGATCAAATCGAAATAAATTTAAATTGTGATGTTGAAATTAATACAAAAAAGTACTAAATTATAC
66 GGATCAAATCGAAATAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAAGTATAC
* * * *
223158 CCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGA
131 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAAAAGTATGGATCAATTTCATA
223223 TGCAAATAAAATTTGGAGGAC
196 TGCAAATAAAATTTGGAGGAC
* * * *
223244 TAAATTTAACAAATATAAAATTACAAATAAAAATTTTAATAAACTAAACAACACA-A---A--AG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* * * * *
223303 GGATCAAATTGAAATAATTTTAAATTTTGAGGTTGAAATTAATACAAAAATGTACTAAATTATAC
66 GGATCAAATCGAAATAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAAGTATAC
* * * *
223368 TCATTTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATA
131 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAAAAGTATGGATCAATTTCATA
*
223433 TGCAAATAAAATGTGGAGGAC
196 TGCAAATAAAATTTGGAGGAC
223454 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACA
223509 AAAGGGATCA
Statistics
Matches: 656, Mismatches: 38, Indels: 10
0.93 0.05 0.01
Matches are distributed among these distances:
210 194 0.30
212 1 0.00
214 49 0.07
215 56 0.09
216 356 0.54
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (216 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
GGATCAAATCGAAATAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAAGTATAC
CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAAAAGTATGGATCAATTTCATA
TGCAAATAAAATTTGGAGGAC
Found at i:223431 original size:426 final size:428
Alignment explanation
Indices: 222598--223508 Score: 1465
Period size: 426 Copynumber: 2.1 Consensus size: 428
222588 ATTTAAGAAT
*
222598 TAAATTGAACAAATATGAAATTACAAATAAAGATTTAAATAAATTAAAC-ACACACAATGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACAATGATGAG
*
222662 GGATCAAATTGAAGAAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAAGTATACC
66 GGATCAAATCGAAGAAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAAGTATACC
* * *
222727 CATTTAAAAATTTATGGGCCAATTAAAATATAGAATTAAGTAAAAAATATGGATCAATTTCATAT
131 CATTTAAAAAGTTATGGGCCAATTAAAATATAGAAATAAGTAAAAAATATGGATCAATTTCAGAT
* *
222792 GCAAAAAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATT
196 GCAAAAAAAATTTGGAGGACTAAATTGAACAAATATAAAATTACAAATAAAAATTTAAATAAACT
222857 AAACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAC
261 AAACAACACACA-T-A-GAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAC
* *
222922 AAAAAAGTACTAAAGTATACCCATTTAAAAATTTATGGGCCAATTAAAAAATAGAATTAAGTAAA
323 AAAAAAGTACTAAAGTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAA
*
222987 AAGTATGGATCAATTTCATATGCAAATAAAATTTGGAGGAC
388 AAGTATGGATCAATTTCATATGCAAATAAAATGTGGAGGAC
* * *
223028 TAAATTGAACAAATATGAAATTATAAATAAAAATTTAAATTAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACAATGATGAG
* *
223093 GGATCAAATCGAA-ATAAATTTAAATTGTGATGTTGAAATTAATACAAAAAAGTACTAAATTATA
66 GGATCAAATCGAAGA-AAATTTAAATTGTGAGGTTGAAATTAATAC-AAAAAGTACTAAAGTATA
* * *
223157 CCCATTTAAAAAGTTATGGGCCAATTTAAAA-ATAGAAATAAGTAATAAGTATGGGTCAATTTCA
129 CCCATTTAAAAAGTTATGGGCCAA-TTAAAATATAGAAATAAGTAAAAAATATGGATCAATTTCA
* * *
223221 GATGCAAATAAAATTTGGAGGACTAAATTTAACAAATATAAAATTACAAATAAAAATTTTAATAA
193 GATGCAAAAAAAATTTGGAGGACTAAATTGAACAAATATAAAATTACAAATAAAAATTTAAATAA
* *
223286 ACTAAACAACACA-A-A-AGGGATCAAATTGAAATAATTTTAAATTTTGAGGTTGAAATTAATAC
258 ACTAAACAACACACATAGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAC
* * * * *
223348 AAAAATGTACTAAATTATACTCATTTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAAT
323 AAAAAAGTACTAAAGTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAA
*
223413 AAGTATGGGTCAATTTCATATGCAAATAAAATGTGGAGGAC
388 AAGTATGGATCAATTTCATATGCAAATAAAATGTGGAGGAC
223454 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACA
223509 AAAGGGATCA
Statistics
Matches: 446, Mismatches: 31, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
426 195 0.44
428 1 0.00
430 47 0.11
431 56 0.13
432 141 0.32
433 6 0.01
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (428 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACAATGATGAG
GGATCAAATCGAAGAAAATTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAAGTATACC
CATTTAAAAAGTTATGGGCCAATTAAAATATAGAAATAAGTAAAAAATATGGATCAATTTCAGAT
GCAAAAAAAATTTGGAGGACTAAATTGAACAAATATAAAATTACAAATAAAAATTTAAATAAACT
AAACAACACACATAGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAA
AAAGTACTAAAGTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAAAAG
TATGGATCAATTTCATATGCAAATAAAATGTGGAGGAC
Found at i:223596 original size:2 final size:2
Alignment explanation
Indices: 223591--223664 Score: 62
Period size: 2 Copynumber: 36.5 Consensus size: 2
223581 AAAACAACTA
* *
223591 AT AT AT AT AT AT AT AT AT AT AT AT GT A- AT AT AA ACT AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T
* * *
223634 TT AT AT AT AT AT -T AT GT AT AA ACT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A
223665 CCATGTATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
1 2 0.04
2 52 0.91
3 3 0.05
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (2 bp):
AT
Found at i:223642 original size:31 final size:30
Alignment explanation
Indices: 223596--223664 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 30
223586 AACTAATATA
223596 TATATATATATATATATATGTA-ATATAAAC
1 TATATATATATATATATAT-TATATATAAAC
* *
223626 TATATAGTTTATATATATATTATGTATAAAC
1 TATATA-TATATATATATATTATATATAAAC
223657 TATATATA
1 TATATATA
223665 CCATGTATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.26
31 25 0.74
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (30 bp):
TATATATATATATATATATTATATATAAAC
Found at i:223660 original size:20 final size:20
Alignment explanation
Indices: 223637--223684 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
223627 ATATAGTTTA
**
223637 TATATATATTATGTATAAAC
1 TATATATACCATGTATAAAC
223657 TATATATACCATGTATAAAC
1 TATATATACCATGTATAAAC
223677 TATA-ATAC
1 TATATATAC
223685 TATATAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (20 bp):
TATATATACCATGTATAAAC
Found at i:223746 original size:11 final size:11
Alignment explanation
Indices: 223732--223769 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
223722 TCTACATAGT
223732 TTATATATAAA
1 TTATATATAAA
*
223743 TTATATATGAA
1 TTATATATAAA
223754 TTATATATAAA
1 TTATATATAAA
*
223765 CTATA
1 TTATA
223770 CAATTTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (11 bp):
TTATATATAAA
Found at i:223870 original size:23 final size:22
Alignment explanation
Indices: 223817--223868 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
223807 AAATAATATA
*
223817 TATTG-TATAAATTATATAGTT
1 TATTGATATAAAATATATAGTT
223838 TATTGATATAAAATATATAGTT
1 TATTGATATAAAATATATAGTT
*
223860 T-TTTATATA
1 TATTGATATA
223869 TATAGTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (22 bp):
TATTGATATAAAATATATAGTT
Found at i:223942 original size:6 final size:6
Alignment explanation
Indices: 223927--223961 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
223917 ATTTAGGGTG
*
223927 TATATT TATATC TATATT TATATT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATATT TATAT
223962 AAACTACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (6 bp):
TATATT
Found at i:224030 original size:33 final size:33
Alignment explanation
Indices: 223993--224132 Score: 132
Period size: 33 Copynumber: 4.4 Consensus size: 33
223983 ATTTATATAC
*
223993 TATATTTATATACTATTTATATAAACTATAGTT
1 TATATTTATATACTATATATATAAACTATAGTT
*
224026 TATATTTATATACTATATATATGAACTATAGTT
1 TATATTTATATACTATATATATAAACTATAGTT
* *
224059 TACA--TATGA-ACTGTATATATAAACTATATAGTT
1 TATATTTAT-ATACTATATATATAAAC--TATAGTT
* * *
224092 TACATAT-TA-ACTATATATAT--ACTAAAGTT
1 TATATTTATATACTATATATATAAACTATAGTT
*
224121 GATATTTATATA
1 TATATTTATATA
224133 TGAACTATAG
Statistics
Matches: 90, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
29 10 0.11
30 2 0.02
31 19 0.21
32 1 0.01
33 56 0.62
34 1 0.01
35 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (33 bp):
TATATTTATATACTATATATATAAACTATAGTT
Found at i:224043 original size:13 final size:13
Alignment explanation
Indices: 223927--224030 Score: 81
Period size: 13 Copynumber: 7.8 Consensus size: 13
223917 ATTTAGGGTG
223927 TATATTTATAT-C
1 TATATTTATATAC
*
223939 TATATTTATAT-T
1 TATATTTATATAC
223951 TATATTTATATAAAC
1 TATATTTATAT--AC
* * *
223966 TACATACTATA-ATT
1 TATAT-TTATATA-C
223980 TATATTTATATAC
1 TATATTTATATAC
223993 TATATTTATATAC
1 TATATTTATATAC
*
224006 TAT-TTATATAAAC
1 TATATT-TATATAC
224019 TATAGTTTATAT
1 TATA-TTTATAT
224031 TTATATACTA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
12 24 0.33
13 30 0.41
14 9 0.12
15 6 0.08
16 4 0.05
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (13 bp):
TATATTTATATAC
Found at i:224076 original size:86 final size:79
Alignment explanation
Indices: 223999--224205 Score: 218
Period size: 84 Copynumber: 2.5 Consensus size: 79
223989 ATACTATATT
223999 TATATACTATTTATATAAACTATAGTTTATATTTATATACTATATATATGAACTATAGTTTACAT
1 TATATA-T-TTTATATAAACTATAGTTTATATTTATATA-TATATATATGAACTATAGTTTACAT
*
224064 ATGAACTGTATATATAAAC
63 ATAAAC--TATATATAAAC
* * * ** *
224083 TATATAGTTTACATATTAACTATA-TATATACTAAAGTTGATATTTATATATGAACTATAGTTTA
1 TATATA-TTT-TATATAAACTATAGTTTATA-TTTA--T-ATATATATATATGAACTATAGTTTA
224147 CATATAAACTATATAATAAAC
60 CATATAAACTATAT-ATAAAC
* *
224168 TATATAGTTTATATAAACTATAGTTGATATTTATATAT
1 TATATATTTTATATAAACTATAGTTTATATTTATATAT
224206 GAACCATAGT
Statistics
Matches: 101, Mismatches: 15, Indels: 18
0.75 0.11 0.13
Matches are distributed among these distances:
80 4 0.04
81 1 0.01
83 20 0.20
84 31 0.31
85 12 0.12
86 30 0.30
87 3 0.03
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (79 bp):
TATATATTTTATATAAACTATAGTTTATATTTATATATATATATATGAACTATAGTTTACATATA
AACTATATATAAAC
Done.