genome.fa.s8787.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008787.1 Hibiscus syriacus cultivar Beakdansim tig00111927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126699

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3586--3619	2	17.5	2	93	6	61	47	0	0	52	1.00
4436--4498	27	2.3	28	84	10	85	17	1	7	73	1.16
7773--7857	5	17.6	5	75	16	56	82	1	14	2	0.83
7773--7855	17	4.9	17	77	16	84	83	1	13	2	0.81
7780--7855	9	9.1	8	80	9	82	84	1	11	2	0.79
9807--10092	90	3.2	90	90	0	455	25	18	20	35	1.95
10138--10209	37	2.0	36	86	2	99	29	16	11	43	1.82
10168--10402	67	3.6	67	83	3	246	27	17	14	40	1.89
10787--11468	129	5.2	131	82	5	758	29	20	19	30	1.97
12068--12154	2	44.0	2	97	2	167	50	0	0	49	1.00
12960--13031	27	2.6	28	81	14	87	19	2	6	70	1.22
14514--14544	11	2.8	11	95	0	53	12	9	58	19	1.62
31171--31243	32	2.3	33	81	9	89	28	15	10	45	1.80
32133--32173	18	2.3	18	87	4	57	29	7	2	60	1.36
34374--34445	26	3.0	24	68	27	62	26	6	4	62	1.39
35728--35771	23	1.9	23	100	0	88	25	15	36	22	1.94
38648--38690	22	2.0	22	95	0	77	27	16	4	51	1.64
39090--39145	23	2.3	24	78	9	60	41	1	1	55	1.21
53649--53723	36	2.1	37	82	2	89	45	4	2	48	1.35
54119--54206	3	29.3	3	95	0	158	34	2	0	63	1.07
54205--54249	22	2.1	21	84	8	56	62	2	0	35	1.08
54762--54803	15	2.8	15	82	7	50	73	2	23	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55643--55689	14	3.5	13	80	13	51	40	2	2	55	1.24
63770--63811	20	2.0	21	86	13	61	26	19	19	35	1.95
66857--66900	11	4.0	11	88	8	63	86	0	11	2	0.66
66857--66906	10	4.8	10	85	14	66	86	0	12	2	0.67
66874--66906	9	3.6	9	95	4	57	90	0	9	0	0.44
67219--67263	16	2.8	16	83	10	56	28	8	6	55	1.56
68061--68518	83	5.5	83	96	0	828	27	13	22	37	1.91
69243--69801	113	5.0	113	96	0	976	37	13	18	30	1.89
69782--69969	95	2.0	93	81	4	216	37	18	17	27	1.92
70125--70254	3	43.3	3	96	0	233	33	2	0	63	1.07
71706--71752	14	3.5	13	80	13	51	40	2	2	55	1.24
73889--73926	7	5.4	7	100	0	76	47	39	0	13	1.42
75385--75444	2	30.0	2	100	0	120	50	0	0	50	1.00
78249--78312	23	2.8	23	80	0	83	31	26	26	15	1.96
78808--78837	2	15.0	2	100	0	60	50	0	0	50	1.00
83244--83312	23	3.0	23	84	0	102	30	26	26	17	1.97
87053--87125	36	2.0	36	100	0	146	32	23	16	27	1.96
95411--95435	3	8.3	3	100	0	50	0	36	0	64	0.94
96038--96077	19	2.0	20	90	4	64	27	15	30	27	1.96
96898--96988	32	2.8	32	83	0	128	24	19	19	36	1.95
97512--97543	14	2.1	16	88	11	50	62	3	18	15	1.45
99786--99947	63	2.6	63	82	4	175	25	19	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99827--99947	63	1.9	64	87	1	181	25	18	19	36	1.94
101482--101529	19	2.5	19	89	0	69	43	4	25	27	1.72
103727--103800	28	2.6	28	80	4	76	43	4	17	35	1.68
103758--103800	14	3.0	15	76	13	54	46	2	16	34	1.60
103930--104002	22	3.3	22	88	1	110	24	19	19	36	1.94
110072--110122	21	2.4	21	93	0	84	19	15	25	39	1.91
110072--110128	21	2.7	21	88	0	69	22	15	24	36	1.94
120413--120471	19	2.9	20	87	7	75	16	25	35	22	1.95

Tables:   1

The End!