Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008788.1 Hibiscus syriacus cultivar Beakdansim tig00111930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62185

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4474--4570
32
3.0
32
77
5
106
38
30
10
20
1.86
4631--4664
16
2.1
16
94
0
59
35
23
11
29
1.90
6583--6631
21
2.3
20
83
13
55
18
8
6
67
1.37
6595--6636
22
1.9
22
90
9
68
19
4
4
71
1.22
10817--10858
20
2.0
21
86
9
59
33
2
35
28
1.70
16183--16232
12
4.1
12
74
23
50
66
10
10
14
1.46
16465--16506
20
2.0
21
86
9
59
33
2
35
28
1.70
17620--17694
36
2.1
37
87
7
109
40
14
14
30
1.86
18194--18256
21
3.0
21
75
22
60
39
3
1
55
1.25
18409--18442
16
2.1
16
88
0
50
32
5
0
61
1.20
18744--18782
14
2.7
14
84
4
51
15
17
0
66
1.25
21771--21840
20
3.3
20
82
9
68
78
5
14
1
1.00
22448--22498
22
2.3
22
93
0
84
35
25
13
25
1.93
23358--23467
37
3.0
37
87
2
159
26
22
11
39
1.89
23478--23569
37
2.5
37
85
3
114
27
19
11
41
1.86
23376--23767
102
3.9
102
93
1
644
29
20
11
37
1.89
23580--23666
37
2.4
37
84
5
106
26
21
12
39
1.89
23681--23767
36
2.4
36
86
0
111
26
21
12
39
1.89
23709--23867
67
2.4
67
86
4
214
32
20
11
35
1.88
24447--24856
106
3.9
102
80
8
389
33
24
19
22
1.97
25317--25392
36
2.1
37
87
7
111
40
15
14
28
1.87
25862--25947
11
7.3
11
72
21
50
34
2
2
60
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25908--25938
15
2.1
15
93
0
53
35
0
0
64
0.94
29956--29999
19
2.4
19
85
7
56
20
9
0
70
1.14
31788--31826
20
2.0
19
85
5
51
25
23
20
30
1.98
33820--33907
10
9.1
10
77
12
94
18
23
30
27
1.97
33820--33909
19
4.7
19
90
6
128
17
25
30
26
1.98
33903--33960
17
3.4
17
97
0
107
17
43
24
15
1.87
33950--33979
7
4.4
7
91
8
53
16
30
30
23
1.96
33950--33975
13
2.0
13
100
0
52
15
30
30
23
1.95
34885--34972
32
2.8
31
75
5
79
19
28
28
23
1.98
41166--41253
10
9.1
10
77
12
94
18
23
30
27
1.97
41166--41255
19
4.7
19
90
6
128
17
25
30
26
1.98
41249--41306
17
3.4
17
92
0
98
17
41
25
15
1.89
41249--41325
34
2.2
36
88
6
113
16
37
27
18
1.92
41296--41325
7
4.4
7
91
8
53
16
30
30
23
1.96
41296--41321
13
2.0
13
100
0
52
15
30
30
23
1.95
42195--42318
63
2.0
63
82
6
153
16
28
29
25
1.97
45945--46000
3
19.0
3
89
10
89
64
0
1
33
1.04
46876--46931
14
3.9
14
73
15
51
53
5
14
26
1.62
46871--46931
29
2.1
29
88
8
90
54
4
13
27
1.59
53912--53974
11
5.9
11
71
14
60
57
1
0
41
1.08
54470--54499
7
4.3
7
91
0
51
46
36
0
16
1.47
54474--54517
14
3.1
14
81
12
54
45
29
0
25
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54470--54514
21
2.1
21
87
0
63
48
31
0
20
1.49
55909--55953
12
3.8
12
79
5
56
37
15
20
26
1.92
55905--55961
23
2.5
23
91
0
87
35
17
21
26
1.95
55905--55987
11
7.2
11
71
10
58
30
18
21
30
1.97

Tables:   1

The End!