Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000879.1 Hibiscus syriacus cultivar Beakdansim tig00001712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60434
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1626 original size:1 final size:1
Alignment explanation
Indices: 1622--1671 Score: 64
Period size: 1 Copynumber: 50.0 Consensus size: 1
1612 AAATTTTGGC
* * * *
1622 TTTTTTTTGTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1672 AAAAATAGCA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (1 bp):
T
Found at i:1639 original size:21 final size:21
Alignment explanation
Indices: 1615--1671 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
1605 TTTTTTGAAA
*
1615 TTTTGGCTTTTTTTTGTTTTT
1 TTTTGGTTTTTTTTTGTTTTT
*
1636 TTTTTGTTTTTTTTTGTTTTT
1 TTTTGGTTTTTTTTTGTTTTT
*
1657 TTTTGTTTTTTTTTT
1 TTTTGGTTTTTTTTT
1672 AAAAATAGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.88
Consensus pattern (21 bp):
TTTTGGTTTTTTTTTGTTTTT
Found at i:1671 original size:11 final size:10
Alignment explanation
Indices: 1622--1670 Score: 89
Period size: 10 Copynumber: 4.8 Consensus size: 10
1612 AAATTTTGGC
1622 TTTTTTTTGTT
1 TTTTTTTTG-T
1633 TTTTTTTTGT
1 TTTTTTTTGT
1643 TTTTTTTTGT
1 TTTTTTTTGT
1653 TTTTTTTTGT
1 TTTTTTTTGT
1663 TTTTTTTT
1 TTTTTTTT
1671 TAAAAATAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 29 0.76
11 9 0.24
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:2010 original size:11 final size:11
Alignment explanation
Indices: 1986--2030 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
1976 TTGGTGCTGG
1986 AAACAAGATAA
1 AAACAAGATAA
* *
1997 AAATAAGATTA
1 AAACAAGATAA
2008 AAACAAGATAA
1 AAACAAGATAA
2019 AGAA-AAGATAA
1 A-AACAAGATAA
2030 A
1 A
2031 TGAATTGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 27 0.93
12 2 0.07
ACGTcount: A:0.71, C:0.04, G:0.11, T:0.13
Consensus pattern (11 bp):
AAACAAGATAA
Found at i:2014 original size:22 final size:22
Alignment explanation
Indices: 1986--2027 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
1976 TTGGTGCTGG
1986 AAACAAGATAAA-AATAAGATTA
1 AAACAAGATAAAGAA-AAGATTA
2008 AAACAAGATAAAGAAAAGAT
1 AAACAAGATAAAGAAAAGAT
2028 AAATGAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (22 bp):
AAACAAGATAAAGAAAAGATTA
Found at i:2493 original size:45 final size:44
Alignment explanation
Indices: 2418--2525 Score: 121
Period size: 50 Copynumber: 2.3 Consensus size: 44
2408 GTCCTAAATA
*
2418 CTAATAATAATAATAATAACTAAACATGTTTTAACTC-A-AATTC
1 CTAATAA-AATAATAATAACTAAACATGTTTTAACCCAACAATTC
*
2461 CTAATAAAATAATAATAACTAAAAATATTGTTTTAACCCAACCTTAATTC
1 CTAATAAAATAATAATAACT--AAACA-TGTTTTAACCCAA-C--AATTC
2511 CTAATAAAATAATAA
1 CTAATAAAATAATAA
2526 ATCTGATTCT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
42 13 0.24
43 7 0.13
44 4 0.07
45 10 0.18
46 1 0.02
50 20 0.36
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (44 bp):
CTAATAAAATAATAATAACTAAACATGTTTTAACCCAACAATTC
Found at i:6219 original size:9 final size:9
Alignment explanation
Indices: 6207--6285 Score: 52
Period size: 9 Copynumber: 8.7 Consensus size: 9
6197 AATTTTGGTA
6207 TTTTTGTTTT
1 TTTTTG-TTT
6217 TTTTTGTTT
1 TTTTTGTTT
6226 TTTTTGTTT
1 TTTTTGTTT
***
6235 TGCCT-TTT
1 TTTTTGTTT
***
6243 TTTGCCTTT
1 TTTTTGTTT
*
6252 TTTTTCCTTT
1 TTTTT-GTTT
**
6262 TTTTTCCTT
1 TTTTTGTTT
6271 TTTTTGTTT
1 TTTTTGTTT
6280 TTTTTG
1 TTTTTG
6286 AAAAAATAGC
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
8 4 0.07
9 36 0.65
10 15 0.27
ACGTcount: A:0.00, C:0.10, G:0.09, T:0.81
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:6221 original size:19 final size:19
Alignment explanation
Indices: 6199--6235 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6189 TTTTTTAAAA
6199 TTTTGGTATTTTTGTTTTT
1 TTTTGGTATTTTTGTTTTT
* *
6218 TTTTGTTTTTTTTGTTTT
1 TTTTGGTATTTTTGTTTT
6236 GCCTTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.84
Consensus pattern (19 bp):
TTTTGGTATTTTTGTTTTT
Found at i:6245 original size:10 final size:10
Alignment explanation
Indices: 6232--6285 Score: 74
Period size: 10 Copynumber: 5.5 Consensus size: 10
6222 GTTTTTTTTG
6232 TTTTGCCTTT
1 TTTTGCCTTT
6242 TTTTGCCTTT
1 TTTTGCCTTT
*
6252 TTTTTCCTTT
1 TTTTGCCTTT
*
6262 TTTTTCCTTT
1 TTTTGCCTTT
*
6272 TTTTG-TTTT
1 TTTTGCCTTT
6281 TTTTG
1 TTTTG
6286 AAAAAATAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
9 8 0.20
10 33 0.80
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTGCCTTT
Found at i:6617 original size:11 final size:11
Alignment explanation
Indices: 6601--6644 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
6591 TTGGTGCTGG
6601 AAATAAGATAA
1 AAATAAGATAA
*
6612 AAATAAGATTA
1 AAATAAGATAA
*
6623 AAACAAGATAA
1 AAATAAGATAA
*
6634 AGA-AAGATAA
1 AAATAAGATAA
6644 A
1 A
6645 TGAATTGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.16
Consensus pattern (11 bp):
AAATAAGATAA
Found at i:8240 original size:17 final size:17
Alignment explanation
Indices: 8189--8243 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
8179 GTAAGTTATC
* *
8189 TTCACTTTC-TTACTAT
1 TTCATTTTCTTTAGTAT
*
8205 TTCA-TTTCTTTAGTCT
1 TTCATTTTCTTTAGTAT
* *
8221 TTCATTTTTTTTATTAT
1 TTCATTTTCTTTAGTAT
8238 TTCATT
1 TTCATT
8244 ACCATATCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
15 4 0.12
16 13 0.41
17 15 0.47
ACGTcount: A:0.16, C:0.16, G:0.02, T:0.65
Consensus pattern (17 bp):
TTCATTTTCTTTAGTAT
Found at i:10329 original size:19 final size:20
Alignment explanation
Indices: 10291--10329 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10281 ATCACTTACT
*
10291 TGCATACTATATGATTTTCA
1 TGCATACCATATGATTTTCA
10311 TGCATACCATATG-TTTTCA
1 TGCATACCATATGATTTTCA
10330 CATCTTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (20 bp):
TGCATACCATATGATTTTCA
Found at i:17794 original size:13 final size:13
Alignment explanation
Indices: 17776--17844 Score: 54
Period size: 13 Copynumber: 5.5 Consensus size: 13
17766 AGATACTAAA
*
17776 CATCACCATCTTC
1 CATCACCATATTC
*
17789 CATCACCAT-TTT
1 CATCACCATATTC
* **
17801 CA-CGCC-TATAA
1 CATCACCATATTC
*
17812 CATCACCATCTTC
1 CATCACCATATTC
*
17825 CATCACCATAGTC
1 CATCACCATATTC
17838 CATCACC
1 CATCACC
17845 TTCACGCCAG
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
10 1 0.02
11 6 0.14
12 7 0.16
13 29 0.67
ACGTcount: A:0.28, C:0.42, G:0.03, T:0.28
Consensus pattern (13 bp):
CATCACCATATTC
Found at i:20997 original size:13 final size:13
Alignment explanation
Indices: 20979--21047 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
20969 AGATACTAAA
20979 CATCACCATATTC
1 CATCACCATATTC
*
20992 CATCACCAT-TTT
1 CATCACCATATTC
* **
21004 CAT-GCC-TATAA
1 CATCACCATATTC
*
21015 CATCACCATCTTC
1 CATCACCATATTC
*
21028 CATCACCATAGTC
1 CATCACCATATTC
21041 CATCACC
1 CATCACC
21048 TTCACGCCAG
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
10 1 0.02
11 6 0.14
12 7 0.16
13 29 0.67
ACGTcount: A:0.29, C:0.39, G:0.03, T:0.29
Consensus pattern (13 bp):
CATCACCATATTC
Found at i:22085 original size:19 final size:21
Alignment explanation
Indices: 22042--22093 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
22032 GAAACCCCTT
*
22042 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTGTAAA
22063 TGAAAATACATGA-TTGT-AA
1 TGAAAATACATGACTTGTAAA
*
22082 TGAAGATACATG
1 TGAAAATACATG
22094 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (21 bp):
TGAAAATACATGACTTGTAAA
Found at i:25369 original size:11 final size:11
Alignment explanation
Indices: 25355--25383 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
25345 TGACTTATTT
25355 TTCTTTTCTTC
1 TTCTTTTCTTC
25366 TTCTTTTCTTC
1 TTCTTTTCTTC
25377 TTCTTTT
1 TTCTTTT
25384 GTATTTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TTCTTTTCTTC
Found at i:26109 original size:19 final size:21
Alignment explanation
Indices: 26066--26109 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
26056 GAAACCCCTT
* *
26066 TGAAAATACATGACTTTTAAA
1 TGAAAACACATGACTTGTAAA
26087 TGAAAACACATGA-TTGT-AA
1 TGAAAACACATGACTTGTAAA
26106 TGAA
1 TGAA
26110 GATACATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 3 0.14
21 12 0.57
ACGTcount: A:0.48, C:0.09, G:0.14, T:0.30
Consensus pattern (21 bp):
TGAAAACACATGACTTGTAAA
Found at i:26116 original size:19 final size:21
Alignment explanation
Indices: 26066--26117 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
26056 GAAACCCCTT
*
26066 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTGTAAA
*
26087 TGAAAACACATGA-TTGT-AA
1 TGAAAATACATGACTTGTAAA
*
26106 TGAAGATACATG
1 TGAAAATACATG
26118 CTCTTGGCCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 12 0.44
20 3 0.11
21 12 0.44
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (21 bp):
TGAAAATACATGACTTGTAAA
Found at i:33183 original size:18 final size:20
Alignment explanation
Indices: 33141--33191 Score: 70
Period size: 18 Copynumber: 2.6 Consensus size: 20
33131 TGAACCCCTT
33141 TGAAAATACATGATTTTTAAA
1 TGAAAATACATGA-TTTTAAA
33162 TGAAAATACATGA-TTT-AA
1 TGAAAATACATGATTTTAAA
*
33180 TGAAGATACATG
1 TGAAAATACATG
33192 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 13 0.45
19 3 0.10
21 13 0.45
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:36547 original size:34 final size:32
Alignment explanation
Indices: 36490--36561 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 32
36480 CTTAGCTTGC
*
36490 TTTC-TTTTTGAATTTCTTTTTCTTTTCT-TCT
1 TTTCTTTTTTGAATTTCTTCTTCTTTT-TATCT
36521 TTTCTTTTTCTGAATTTTCTTCTTCTTTTTATCT
1 TTTCTTTTT-TGAA-TTTCTTCTTCTTTTTATCT
36555 TTTCTTT
1 TTTCTTT
36562 CTTTTTGTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
31 4 0.11
32 4 0.11
33 5 0.14
34 23 0.64
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.74
Consensus pattern (32 bp):
TTTCTTTTTTGAATTTCTTCTTCTTTTTATCT
Found at i:37302 original size:18 final size:20
Alignment explanation
Indices: 37264--37310 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
37254 ACCCCTTTGA
37264 AAATAC-TGATTTTTAAATG
1 AAATACATGATTTTTAAATG
37283 AAATACATGA-TTTT-AATG
1 AAATACATGATTTTTAAATG
37301 AAGATACATG
1 AA-ATACATG
37311 CTCTTGGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.23
19 17 0.65
20 3 0.12
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (20 bp):
AAATACATGATTTTTAAATG
Found at i:46559 original size:129 final size:129
Alignment explanation
Indices: 46276--46526 Score: 346
Period size: 129 Copynumber: 2.0 Consensus size: 129
46266 GGATCAAAGC
** * * * *
46276 TGAAATAGAAAATTGGTATATTCGAAGAAC-ACTATAAGTTGGTACCTATAATGCATGCTAATCT
1 TGAAATAGAAAATTATTATATTTGAAGAGCTA-TATCATTTGGTACCTATAATGCATGCTAATCT
* * *
46340 TACTTGAATGCTTAGTTATCAAATTAGGTGGATGAATAACATCTTAGGGTTTTTGAATTAGAGCG
65 TACTTGAATGCTTAGTTACCAAATTAGGTGGATGAATAACATCTTAGGGTTTTTAAATTAGAGAG
* *
46405 TGAAATAGAAAATTATTCTATTTGAAGAGCTATATCATTTGGTACCTATATTGCATGCTAATCTT
1 TGAAATAGAAAATTATTATATTTGAAGAGCTATATCATTTGGTACCTATAATGCATGCTAATCTT
* * *
46470 ACTTGAATGCTTAGTTCCCAAATTTGGTGGATGAA-AACATGTTAGGG-TTTTAAATTA
66 ACTTGAATGCTTAGTTACCAAATTAGGTGGATGAATAACATCTTAGGGTTTTTAAATTA
46527 ATGAAGGATT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
127 9 0.08
128 11 0.10
129 87 0.81
130 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (129 bp):
TGAAATAGAAAATTATTATATTTGAAGAGCTATATCATTTGGTACCTATAATGCATGCTAATCTT
ACTTGAATGCTTAGTTACCAAATTAGGTGGATGAATAACATCTTAGGGTTTTTAAATTAGAGAG
Found at i:52329 original size:12 final size:11
Alignment explanation
Indices: 52312--52372 Score: 81
Period size: 10 Copynumber: 5.5 Consensus size: 11
52302 TTGCTATTTT
*
52312 AAAAAAAAAGC
1 AAAAAAAAAAC
52323 AAAAAAAAAAGGC
1 AAAAAAAAAA--C
52336 AAAAAAAAAA-
1 AAAAAAAAAAC
52346 AAAAAAAAAAC
1 AAAAAAAAAAC
52357 -AAAAAAAAAC
1 AAAAAAAAAAC
52367 AAAAAA
1 AAAAAA
52373 GCCAAAATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
10 20 0.44
11 14 0.31
13 11 0.24
ACGTcount: A:0.89, C:0.07, G:0.05, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:52330 original size:13 final size:13
Alignment explanation
Indices: 52312--52379 Score: 68
Period size: 13 Copynumber: 5.2 Consensus size: 13
52302 TTGCTATTTT
52312 AAAAAAAAAGCAA
1 AAAAAAAAAGCAA
*
52325 AAAAAAAAGGCAA
1 AAAAAAAAAGCAA
52338 AAAAAAAAA--AA
1 AAAAAAAAAGCAA
**
52349 AAAAAAACAAAAAA
1 AAAAAAA-AAGCAA
52363 AAACAAAAAAGCCAA
1 AAA-AAAAAAG-CAA
52378 AA
1 AA
52380 TTTAAAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
11 9 0.20
12 2 0.04
13 20 0.43
14 7 0.15
15 8 0.17
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGCAA
Found at i:52345 original size:19 final size:19
Alignment explanation
Indices: 52323--52379 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
52313 AAAAAAAAGC
* *
52323 AAAAAAAAAAGGCAAAAAAA
1 AAAAAAAAAAAG-ACAAAAA
*
52343 AAAAAAAAAAAAACAAAAA
1 AAAAAAAAAAAGACAAAAA
* *
52362 AAAACAAAAAAGCCAAAA
1 AAAAAAAAAAAGACAAAA
52380 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 21 0.68
20 10 0.32
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAGACAAAAA
Found at i:52390 original size:1 final size:1
Alignment explanation
Indices: 52312--52372 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
52302 TTGCTATTTT
** *** * *
52312 AAAAAAAAAGCAAAAAAAAAAGGCAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
52373 GCCAAAATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.89, C:0.07, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:58200 original size:18 final size:18
Alignment explanation
Indices: 58177--58217 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
58167 AGGCATTTGA
*
58177 TCCTCTGGTCGTGCTTGT
1 TCCTCTGGTCGAGCTTGT
*
58195 TCCTCTGGTGGAGCTTGT
1 TCCTCTGGTCGAGCTTGT
58213 TCCTC
1 TCCTC
58218 GTGCTGTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.02, C:0.29, G:0.27, T:0.41
Consensus pattern (18 bp):
TCCTCTGGTCGAGCTTGT
Done.