Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008790.1 Hibiscus syriacus cultivar Beakdansim tig00111933_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36897

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3967--4052
9
9.3
9
77
9
84
16
26
27
29
1.97
3984--4052
29
2.5
27
83
6
84
15
28
28
26
1.96
4049--4091
22
2.0
22
95
0
77
18
46
23
11
1.82
10852--10956
54
1.9
54
96
0
192
25
25
12
36
1.91
12997--13190
7
27.7
7
79
19
185
0
13
0
85
0.63
13001--13180
46
4.0
44
80
11
193
0
12
0
86
0.60
13001--13154
1
154.0
1
76
0
146
0
11
0
88
0.52
13000--13189
31
6.0
32
85
11
218
0
14
0
85
0.64
12998--13190
39
4.6
44
79
19
184
0
13
0
85
0.63
13001--13190
45
4.0
49
80
13
195
0
13
0
85
0.62
19358--19391
2
17.0
2
100
0
68
50
0
0
50
1.00
19709--19740
2
16.0
2
100
0
64
50
0
0
50
1.00
20768--20806
3
12.7
3
94
5
69
35
0
0
64
0.94
22158--22189
2
16.0
2
93
0
55
53
0
0
46
1.00
22206--22659
158
2.7
168
79
11
438
41
8
7
42
1.63
22457--22495
2
19.5
2
94
0
69
51
0
0
48
1.00
23081--23142
13
4.5
14
74
15
58
29
1
1
67
1.09
23101--23137
15
2.4
16
82
13
51
27
0
2
70
1.01
31417--31550
54
2.5
54
79
2
144
38
15
20
25
1.92
31912--31978
22
3.0
22
86
4
91
37
11
13
37
1.82
31919--31995
22
3.5
22
87
8
104
36
10
14
38
1.80
32770--32939
74
2.3
74
91
0
268
27
20
20
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33118--33174
3
19.7
3
86
13
84
36
0
0
63
0.95
33118--33174
8
6.6
9
90
9
84
36
0
0
63
0.95
33942--33986
20
2.2
20
100
0
90
35
17
24
22
1.95
35182--35253
22
3.2
22
88
2
108
44
4
4
47
1.41
35366--35415
19
2.7
19
96
3
93
42
10
0
48
1.37

Tables:   1

The End!