genome.fa.s8794.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008794.1 Hibiscus syriacus cultivar Beakdansim tig00111938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88206

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2362--2407	18	2.6	18	92	0	74	47	13	6	32	1.68
3321--3354	17	2.1	16	88	5	50	76	0	8	14	1.01
3826--3871	23	2.0	23	83	8	58	56	13	2	28	1.48
6827--6869	20	2.2	20	87	4	61	67	2	13	16	1.33
13713--13759	24	2.0	24	83	8	60	57	12	2	27	1.47
15159--15215	21	2.9	19	79	18	64	17	26	5	50	1.67
17577--17622	18	2.6	18	92	0	74	47	13	6	32	1.68
17678--17719	17	2.5	17	84	0	57	42	11	14	30	1.81
22181--22233	21	2.5	21	90	0	79	33	15	24	26	1.95
22583--22646	29	2.2	29	100	0	128	35	7	12	43	1.71
23996--24091	44	2.2	44	84	3	122	32	13	20	33	1.92
24175--24235	22	2.7	22	89	2	86	14	22	24	37	1.92
24241--24297	24	2.4	24	87	0	78	21	19	21	38	1.93
24412--24472	31	2.0	31	83	0	77	31	3	19	45	1.66
28368--28417	19	2.6	19	83	0	64	44	8	18	30	1.78
29200--29252	20	2.6	20	75	3	52	45	22	11	20	1.83
35404--35450	19	2.5	20	86	10	71	44	12	21	21	1.85
35533--35597	11	5.9	11	82	7	78	30	21	15	32	1.94
36124--36181	24	2.3	24	80	11	64	34	22	20	22	1.97
36130--36187	24	2.5	24	81	13	75	32	25	22	18	1.97
47290--47333	15	2.6	17	82	10	56	47	2	0	50	1.13
48077--48160	23	3.6	24	82	4	77	39	2	1	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48261--48317	16	3.4	16	75	13	51	54	3	0	42	1.17
48271--48324	19	3.0	18	74	20	51	55	1	0	42	1.10
48352--48409	25	2.4	25	85	8	75	36	3	0	60	1.14
48397--48472	31	2.5	31	95	0	134	46	2	0	51	1.15
49454--49491	11	3.5	11	79	13	51	68	0	2	28	1.03
50701--50751	12	4.1	13	78	17	54	76	0	1	21	0.88
50806--50914	35	3.0	36	84	10	134	43	10	2	44	1.52
50899--50927	15	1.9	15	100	0	58	44	0	0	55	0.99
51036--51088	2	26.5	2	92	7	90	49	1	0	49	1.12
59995--60035	4	10.5	4	80	15	50	70	0	2	26	0.99
59995--60021	14	1.9	14	100	0	54	74	0	0	25	0.83
60105--60403	110	2.8	108	89	6	414	43	9	2	45	1.49
60105--60376	35	7.5	36	89	6	401	42	8	2	45	1.49
60198--60441	106	2.3	102	78	11	287	43	10	2	43	1.53
61902--61930	2	15.0	2	92	7	51	48	0	0	51	1.00
61915--62326	36	11.4	36	76	14	345	44	3	6	45	1.48
61957--62237	107	2.6	109	83	10	362	45	3	6	45	1.45
62186--62210	12	2.1	12	100	0	50	40	8	8	44	1.63
62199--62260	27	2.4	26	86	5	81	38	6	8	46	1.59
62136--62319	103	1.8	100	82	11	239	42	4	6	45	1.51
62339--62380	3	14.0	3	90	9	68	33	0	0	66	0.92
62340--62395	9	5.5	11	87	10	52	26	0	1	71	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63236--63336	5	19.4	5	69	22	57	20	3	1	73	1.10
63236--63378	79	1.9	76	83	12	186	17	6	2	74	1.13
63299--63384	24	3.7	22	67	24	52	16	5	1	76	1.03
63395--63429	15	2.2	16	90	5	54	2	17	0	80	0.84
63447--63495	14	3.6	14	76	17	50	18	2	2	77	0.96
66150--66333	95	2.0	94	88	4	273	32	20	17	29	1.96
67526--68798	84	15.2	84	80	4	1356	31	23	19	25	1.98
67526--68812	168	7.7	168	87	2	1707	31	23	19	25	1.98
67526--68808	335	3.8	335	86	2	1688	31	23	19	25	1.98
69350--69432	37	2.4	37	80	11	104	40	4	9	44	1.58
69532--69558	13	2.1	13	100	0	54	37	7	7	48	1.59
69420--69671	70	3.6	68	82	11	255	44	3	7	44	1.50
69641--69665	12	2.1	12	100	0	50	40	8	8	44	1.63
69420--69692	36	7.7	37	79	12	238	43	4	7	44	1.53
69654--69713	25	2.4	25	85	0	75	38	6	10	45	1.64
69679--69748	37	1.9	36	82	8	88	41	4	7	47	1.50
69758--69801	19	2.3	19	84	7	54	50	2	2	45	1.27
71201--71239	20	2.0	20	89	0	60	30	33	15	20	1.94
76387--76468	24	3.6	24	70	20	77	21	24	23	30	1.99
79155--79245	46	2.0	45	85	6	121	29	24	19	26	1.98
80044--80232	16	11.1	17	67	21	60	16	6	2	74	1.13
80092--80227	16	7.8	16	71	21	78	18	5	1	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80081--80141	29	2.1	28	84	6	77	11	9	3	75	1.16
80124--80295	4	42.8	4	69	14	68	20	7	1	70	1.18
80254--80283	15	1.9	15	93	6	51	20	3	0	76	0.92
84017--84056	21	2.0	21	90	5	64	60	2	0	37	1.11
84066--84137	15	5.1	15	69	17	55	41	0	4	54	1.20
84049--84132	42	2.0	42	88	2	125	41	2	7	48	1.43
84760--84791	15	2.1	15	94	0	55	28	6	21	43	1.77
85393--85423	16	1.9	16	93	0	53	19	12	19	48	1.81
86572--86616	22	2.1	21	91	4	72	37	6	17	37	1.76

Tables:   1

The End!