Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008795.1 Hibiscus syriacus cultivar Beakdansim tig00111939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104940
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:2882 original size:18 final size:18
Alignment explanation
Indices: 2861--2949 Score: 106
Period size: 18 Copynumber: 4.9 Consensus size: 18
2851 ATTATCGTAA
*
2861 GAAGCACGATGATCATTG
1 GAAGCACGATTATCATTG
* *
2879 GAAGCACGATTATCGTAG
1 GAAGCACGATTATCATTG
* ** *
2897 GAAGGACGACGACCATTG
1 GAAGCACGATTATCATTG
*
2915 GAAACACGATTATCATTG
1 GAAGCACGATTATCATTG
2933 GAAGCACGATTATCATT
1 GAAGCACGATTATCATT
2950 TGTGACACAG
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 56 1.00
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (18 bp):
GAAGCACGATTATCATTG
Found at i:2890 original size:36 final size:36
Alignment explanation
Indices: 2850--2949 Score: 128
Period size: 36 Copynumber: 2.8 Consensus size: 36
2840 TAGGAAGTCT
* *
2850 GATTATCGTAAGAAGCACGATGATCATTGGAAGCAC
1 GATTATCGTAGGAAGCACGATGATCATTGGAAACAC
* * *
2886 GATTATCGTAGGAAGGACGACGACCATTGGAAACAC
1 GATTATCGTAGGAAGCACGATGATCATTGGAAACAC
* * *
2922 GATTATCATTGGAAGCACGATTATCATT
1 GATTATCGTAGGAAGCACGATGATCATT
2950 TGTGACACAG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (36 bp):
GATTATCGTAGGAAGCACGATGATCATTGGAAACAC
Found at i:4014 original size:14 final size:14
Alignment explanation
Indices: 3995--4024 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3985 TTTGTTAAGC
3995 CTAACAGACTCTAA
1 CTAACAGACTCTAA
4009 CTAACAGACTCTAA
1 CTAACAGACTCTAA
4023 CT
1 CT
4025 GAATCTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.30, G:0.07, T:0.23
Consensus pattern (14 bp):
CTAACAGACTCTAA
Found at i:6550 original size:29 final size:29
Alignment explanation
Indices: 6492--6550 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 29
6482 GAGCAACTCG
*
6492 AAAATATAATATATTAAGAATTTATTTTT
1 AAAATATAATATATTAAGAATTTATATTT
*
6521 AAAA-ATAA-ATATTAATAATATTAATATTT
1 AAAATATAATATATTAAGAAT-TT-ATATTT
6550 A
1 A
6551 TGTGTTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 10 0.38
28 6 0.23
29 10 0.38
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
AAAATATAATATATTAAGAATTTATATTT
Found at i:6920 original size:31 final size:31
Alignment explanation
Indices: 6885--6953 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
6875 TATAACTATG
* * *
6885 ATTTGATCCTTTCAAAAATTATAAAATTACA
1 ATTTGATCCATCCAAAAAATATAAAATTACA
6916 ATTTGAT-CATCCAAAAAATATAAAATTACA
1 ATTTGATCCATCCAAAAAATATAAAATTACA
*
6946 AATTGATC
1 ATTTGATC
6954 AGACCATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 26 0.79
31 7 0.21
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (31 bp):
ATTTGATCCATCCAAAAAATATAAAATTACA
Found at i:6938 original size:30 final size:30
Alignment explanation
Indices: 6897--6954 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
6887 TTGATCCTTT
* *
6897 CAAAAATTATAAAATTACAATTTGATCATC
1 CAAAAAATATAAAATTACAAATTGATCATC
6927 CAAAAAATATAAAATTACAAATTGATCA
1 CAAAAAATATAAAATTACAAATTGATCA
6955 GACCATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.55, C:0.12, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAAAAATATAAAATTACAAATTGATCATC
Found at i:7504 original size:23 final size:23
Alignment explanation
Indices: 7478--7525 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
7468 ATAAAGTACA
*
7478 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
7501 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
7524 AT
1 AT
7526 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:7931 original size:20 final size:21
Alignment explanation
Indices: 7893--7932 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7883 TCCACAGTGA
* *
7893 AAAAAGTATGGACACTTTTAT
1 AAAAAGGATAGACACTTTTAT
7914 AAAAAGGATAGACA-TTTTA
1 AAAAAGGATAGACACTTTTA
7933 CAATATAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
AAAAAGGATAGACACTTTTAT
Found at i:7984 original size:23 final size:23
Alignment explanation
Indices: 7935--7984 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
7925 ACATTTTACA
* *
7935 ATATAACCACTACCTATTATATT
1 ATATAACCACTACCTATTACATC
* *
7958 ATATAAGCGCTACCTATTACATC
1 ATATAACCACTACCTATTACATC
7981 ATAT
1 ATAT
7985 GTTTACCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATAACCACTACCTATTACATC
Found at i:8383 original size:25 final size:24
Alignment explanation
Indices: 8321--8385 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
8311 CACTCAAAAG
*
8321 ATGTATATACCTAAATATGTAGTT
1 ATGTACATACCTAAATATGTAGTT
***
8345 AACAACATACCTAAATATGTAGTT
1 ATGTACATACCTAAATATGTAGTT
8369 ATTGTACATACCTAAAT
1 A-TGTACATACCTAAAT
8386 TTAATGATAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (24 bp):
ATGTACATACCTAAATATGTAGTT
Found at i:11247 original size:180 final size:182
Alignment explanation
Indices: 10837--11325 Score: 851
Period size: 180 Copynumber: 2.7 Consensus size: 182
10827 TTAAAATTAC
*
10837 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACAC-TTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
10902 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
65 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
10967 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
130 ATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGT
* *
11020 CGATACTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATA
1 CGACACTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
11085 TTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAA-CGGTATATTTATACCGGTTA
66 TTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTA
*
11149 TATTAC-AAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 TATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGT
11200 CGACACTTTTTAACAAT-GTATCGACAC-TTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTT-A-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
*
11263 GATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
64 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
11326 ATAGCATTGC
Statistics
Matches: 293, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
180 133 0.45
181 53 0.18
182 102 0.35
183 5 0.02
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (182 bp):
CGACACTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
TTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTA
TATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGT
Found at i:11393 original size:25 final size:25
Alignment explanation
Indices: 11365--11454 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 25
11355 TAATATGTTG
11365 AAAGGATCGATACTTTTTTTGTTAA
1 AAAGGATCGATACTTTTTTTGTTAA
** *
11390 AAAGTTTCCATACTTTTTTTGTT-A
1 AAAGGATCGATACTTTTTTTGTTAA
** * *
11414 AAAGTTTCTATAC---TTTT-ATAA
1 AAAGGATCGATACTTTTTTTGTTAA
11435 AAAGGATCGATACTTTTTTT
1 AAAGGATCGATACTTTTTTT
11455 AAAGATATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
20 1 0.02
21 15 0.28
24 17 0.32
25 20 0.38
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.48
Consensus pattern (25 bp):
AAAGGATCGATACTTTTTTTGTTAA
Found at i:11406 original size:24 final size:24
Alignment explanation
Indices: 11374--11430 Score: 96
Period size: 24 Copynumber: 2.3 Consensus size: 24
11364 GAAAGGATCG
11374 ATACTTTTTTTGTTAAAAAGTTTCC
1 ATACTTTTTTTGTT-AAAAGTTTCC
*
11399 ATACTTTTTTTGTTAAAAGTTTCT
1 ATACTTTTTTTGTTAAAAGTTTCC
11423 ATACTTTT
1 ATACTTTT
11431 ATAAAAAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 17 0.55
25 14 0.45
ACGTcount: A:0.26, C:0.11, G:0.07, T:0.56
Consensus pattern (24 bp):
ATACTTTTTTTGTTAAAAGTTTCC
Found at i:12873 original size:3 final size:3
Alignment explanation
Indices: 12865--12942 Score: 57
Period size: 3 Copynumber: 26.0 Consensus size: 3
12855 ACTTGTTTGG
* * * * ** *
12865 ATC ATC ATC TTC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATT GCC AGC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * *
12913 TTC ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
12943 GTCAGCTTCA
Statistics
Matches: 54, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:12882 original size:12 final size:12
Alignment explanation
Indices: 12869--12954 Score: 82
Period size: 12 Copynumber: 6.9 Consensus size: 12
12859 GTTTGGATCA
*
12869 TCATCTTCATCA
1 TCATCTTCATCG
*
12881 TCATCATCATCG
1 TCATCTTCATCG
*
12893 TCATCATCTTCATTG
1 ---TCATCTTCATCG
* *
12908 CCAGCTTCATCG
1 TCATCTTCATCG
*
12920 TCATCATCATCG
1 TCATCTTCATCG
12932 TCATCTTCATCG
1 TCATCTTCATCG
*
12944 TCAGCTTCATC
1 TCATCTTCATC
12955 TTCTGCGACC
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
12 49 0.83
15 10 0.17
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:12888 original size:18 final size:18
Alignment explanation
Indices: 12865--12954 Score: 81
Period size: 18 Copynumber: 4.8 Consensus size: 18
12855 ACTTGTTTGG
12865 ATCATCATCTTCATCATC
1 ATCATCATCTTCATCATC
*
12883 ATCATCATCGTCATCATC
1 ATCATCATCTTCATCATC
* * *
12901 TTCATTGCCAGCTTCATCGTC
1 ATCA-T--CATCTTCATCATC
* *
12922 ATCATCATCGTCATCTTC
1 ATCATCATCTTCATCATC
* *
12940 ATCGTCAGCTTCATC
1 ATCATCATCTTCATC
12955 TTCTGCGACC
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
18 42 0.74
19 1 0.02
20 1 0.02
21 13 0.23
ACGTcount: A:0.22, C:0.33, G:0.08, T:0.37
Consensus pattern (18 bp):
ATCATCATCTTCATCATC
Found at i:12924 original size:36 final size:36
Alignment explanation
Indices: 12878--12954 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
12868 ATCATCTTCA
* *
12878 TCATCATCATCATCGTCATCATCTTCATTGCCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGCCAGCT
* * *
12914 TCATCGTCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGCCAGCT
12950 TCATC
1 TCATC
12955 TTCTGCGACC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.21, C:0.34, G:0.09, T:0.36
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGCCAGCT
Found at i:12957 original size:6 final size:6
Alignment explanation
Indices: 12869--12957 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
12859 GTTTGGATCA
* * * * *
12869 TCATCT TCATCA TCATCA TCATCGT CATCATCT TCAT-T GCCAGCT TCATCG
1 TCATCT TCATCT TCATCT TCATC-T --TCATCT TCATCT -TCATCT TCATCT
* * * *
12920 TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
12958 TGCGACCGCT
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
5 1 0.02
6 56 0.88
7 1 0.02
8 1 0.02
9 5 0.08
ACGTcount: A:0.20, C:0.34, G:0.08, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:14866 original size:185 final size:184
Alignment explanation
Indices: 14534--14914 Score: 717
Period size: 185 Copynumber: 2.1 Consensus size: 184
14524 GGTTCGATGA
* *
14534 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
1 TTTTGGGTTCGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCAT
*
14599 TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCA
66 TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCA
14664 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC
131 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC
14718 TTTTGGGTTCGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCAT
1 TTTTGGGTTCGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCAT
*
14783 TCTGGAAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTC
66 TCTGG-AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTC
14848 ATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC
130 ATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC
14903 TTTTGGGTTCGA
1 TTTTGGGTTCGA
14915 TGATTTTGGG
Statistics
Matches: 192, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
184 68 0.35
185 124 0.65
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (184 bp):
TTTTGGGTTCGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCAT
TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCA
TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC
Found at i:15064 original size:199 final size:199
Alignment explanation
Indices: 14718--15370 Score: 1182
Period size: 198 Copynumber: 3.3 Consensus size: 199
14708 TACATTATAC
* *
14718 TTTTGGGTTCGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCAT
1 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
*
14783 TCTGGAAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTC
66 TCTGG-AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTC
14848 ATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTC
130 ATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTC
14913 GATGA
195 GATGA
14918 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
1 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
14983 TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCA
66 TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCA
15048 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCG
131 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCG
15113 ATGA
196 ATGA
15117 -TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
1 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
* *
15181 TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCA
66 TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCA
* * *
15246 TAAAACCGGTAGACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTC
131 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTC
*
15311 GATGT
195 GATGA
* *
15316 TTTTGGGATTGACACTTTTTATATATGTATCGACACTTTATGGGTGCACCCTGTT
1 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
15371 GGCCATATTG
Statistics
Matches: 440, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
198 185 0.42
199 135 0.31
200 120 0.27
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (199 bp):
TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAT
TCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCA
TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCG
ATGA
Found at i:15520 original size:19 final size:19
Alignment explanation
Indices: 15489--15537 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
15479 TTATATTCAC
*
15489 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
* *
15508 ATGCAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
15527 ATACAAAATTA
1 ATACAAAATTA
15538 ACCCTACATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:17297 original size:23 final size:23
Alignment explanation
Indices: 17270--17316 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
17260 GTTCACTCCT
17270 CAAATCCACAACCTCCTTCACCA
1 CAAATCCACAACCTCCTTCACCA
17293 CAAATCCACAACCTCCTTCACCA
1 CAAATCCACAACCTCCTTCACCA
17316 C
1 C
17317 TCCCTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.49, G:0.00, T:0.17
Consensus pattern (23 bp):
CAAATCCACAACCTCCTTCACCA
Found at i:17388 original size:33 final size:33
Alignment explanation
Indices: 17351--17416 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
17341 AATCTTAATA
*
17351 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
17384 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
17417 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:17475 original size:21 final size:21
Alignment explanation
Indices: 17450--17514 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
17440 CCCCTTATGC
* *
17450 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
* *
17471 CTCTCGAGTTTCTCTACGACT
1 CTCTCAAGTTTCTCTTCGACT
**
17492 CGATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
17513 CT
1 CT
17515 TGATTGTCTT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:19763 original size:17 final size:18
Alignment explanation
Indices: 19741--19783 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
19731 ATATATCCGG
19741 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
19758 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
19778 TATCAT
1 TATCAT
19784 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:19801 original size:20 final size:19
Alignment explanation
Indices: 19746--19792 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
19736 TCCGGTATCA
19746 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
19765 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
19786 TTTTACC
1 TTTTACC
19793 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:19953 original size:20 final size:20
Alignment explanation
Indices: 19926--19972 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
19916 TCCGGTAACG
19926 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
19945 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
19966 TTTTACC
1 TTTTACC
19973 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:20137 original size:182 final size:181
Alignment explanation
Indices: 19713--20184 Score: 696
Period size: 180 Copynumber: 2.6 Consensus size: 181
19703 CGTACTTACG
* * *
19713 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
19778 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATA-TTTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
* *
19842 AGGCGCTATAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* *
19893 AAAGTATCGACACTTTTAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
19958 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** *
20023 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
* * * * * *
20075 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTGACCAGTTTTATCATTTCT-ATACCGGTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTT-TGATACCGGTT
* * *
20139 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
65 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
20185 AATTTGGATC
Statistics
Matches: 263, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
180 97 0.37
181 68 0.26
182 97 0.37
183 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (181 bp):
AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:20705 original size:228 final size:228
Alignment explanation
Indices: 20251--20736 Score: 861
Period size: 229 Copynumber: 2.1 Consensus size: 228
20241 ACCTACTTTT
*
20251 ATAAGTA-TGTACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTC
1 ATAAGTATTG-ACACTTTTATAAAAATGATATATACTTTTTTGAAAGTTATGTAATTTATGTTTC
20315 AATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAA
65 AATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAA
*
20380 ATATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
130 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
* *
20445 CAAATATAATAATAAATATGTTTTCAACAGTGAA
195 CAAAGATAATAATAAATATATTTTCAACAGTGAA
20479 ATAAGTATTGACACTTTTATAAAAATGATATATACTTTTTTGAAAGTTATGTAATTTATGTTTCA
1 ATAAGTATTGACACTTTTATAAAAATGATATATACTTTTTTGAAAGTTATGTAATTTATGTTTCA
*
20544 ATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAA
66 A-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAA
20609 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTA-AATTTTAAATTTAACAATATTAA
130 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTAAATTTAACAATATTAA
*
20673 CTAAAGATAATAATAAATATATTTTC-ACAGTGAA
194 CCAAAGATAATAATAAATATATTTTCAACAGTGAA
*
20707 ATAAGTATGGACACTTTTATAAAAATGATA
1 ATAAGTATTGACACTTTTATAAAAATGATA
20737 GATAATTTAC
Statistics
Matches: 248, Mismatches: 7, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
228 101 0.41
229 147 0.59
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (228 bp):
ATAAGTATTGACACTTTTATAAAAATGATATATACTTTTTTGAAAGTTATGTAATTTATGTTTCA
ATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAAA
AATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACC
AAAGATAATAATAAATATATTTTCAACAGTGAA
Found at i:22531 original size:20 final size:21
Alignment explanation
Indices: 22479--22531 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
22469 AGGTATGTTT
*
22479 TAAAA-AAATTTAAAATATAA
1 TAAAATAATTTTAAAATATAA
*
22499 TTATAATAATTTTAAAATATAA
1 -TAAAATAATTTTAAAATATAA
*
22521 -AAAATATTTTT
1 TAAAATAATTTT
22532 TGAATATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 9 0.33
21 4 0.15
22 14 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAATAATTTTAAAATATAA
Found at i:23144 original size:14 final size:15
Alignment explanation
Indices: 23103--23148 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
23093 AATTACTGGA
23103 ACTGGAAAATGAATT
1 ACTGGAAAATGAATT
**
23118 ACTGGAATTTGAATT
1 ACTGGAAAATGAATT
23133 A-TGGAAAATGAATT
1 ACTGGAAAATGAATT
23147 AC
1 AC
23149 ATTTATGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (15 bp):
ACTGGAAAATGAATT
Found at i:23403 original size:49 final size:50
Alignment explanation
Indices: 23306--23404 Score: 114
Period size: 49 Copynumber: 2.0 Consensus size: 50
23296 TACAAATATT
*
23306 AAATATAATAAATAATATTATTTATCATAAAACTTAATATTATTATTTTA
1 AAATATAATAAATAATATTATTTATCATAAAACTTAATATTATAATTTTA
* * * *
23356 AAATATTA-AAATAAT-TTATTTATTATTAAATA-TTATTTTTATAATTTTA
1 AAATATAATAAATAATATTATTTATCA-TAAA-ACTTAATATTATAATTTTA
23405 TTAATAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
48 9 0.21
49 25 0.60
50 8 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (50 bp):
AAATATAATAAATAATATTATTTATCATAAAACTTAATATTATAATTTTA
Found at i:23626 original size:29 final size:28
Alignment explanation
Indices: 23545--23632 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 28
23535 AAAATATAAT
*
23545 TTAAATAT-ATAAATAATATTAT-TCATTA
1 TTAAATATAAAAAAT-ATATTATAT-ATTA
*
23573 TTAAATATAAAAAATTTATTATATATTA
1 TTAAATATAAAAAATATATTATATATTA
23601 TTAAA-ATAAAAATATAATATCT-TATATTA
1 TTAAATATAAAAA-AT-ATAT-TATATATTA
23630 TTA
1 TTA
23633 TATAATTGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 7 0.13
28 25 0.48
29 19 0.37
30 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (28 bp):
TTAAATATAAAAAATATATTATATATTA
Found at i:26048 original size:62 final size:62
Alignment explanation
Indices: 25977--26100 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
25967 GGAAACAAAG
*
25977 ATATACATTCTAAACTAATGATACACACTATAAACAGAATATATTGAACATATATTCTAACA
1 ATATACATTCTAAACTAATGATACAAACTATAAACAGAATATATTGAACATATATTCTAACA
26039 ATATACATTCTAAACTAATGATACAAACTATAAACAGAATATATTGAACATATATTCTAACA
1 ATATACATTCTAAACTAATGATACAAACTATAAACAGAATATATTGAACATATATTCTAACA
26101 GCAACACCTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (62 bp):
ATATACATTCTAAACTAATGATACAAACTATAAACAGAATATATTGAACATATATTCTAACA
Found at i:28739 original size:32 final size:32
Alignment explanation
Indices: 28644--28740 Score: 106
Period size: 32 Copynumber: 3.0 Consensus size: 32
28634 TATATGTATC
*
28644 ACATGTCATGCCATCATTTTAGATGACATGAT
1 ACATGTCATGCCATCATCTTAGATGACATGAT
* ** * * *
28676 ACATATCATATCAACA-CCTAGAGTGATATGAT
1 ACATGTCATGCCATCATCTTAGA-TGACATGAT
*
28708 ACATGTCATGCCATCATCTTGGATGACATGAT
1 ACATGTCATGCCATCATCTTAGATGACATGAT
28740 A
1 A
28741 TATGACGTAC
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
31 4 0.08
32 41 0.84
33 4 0.08
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (32 bp):
ACATGTCATGCCATCATCTTAGATGACATGAT
Found at i:29925 original size:11 final size:11
Alignment explanation
Indices: 29909--29938 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
29899 CCTCTTCATT
29909 CAAACACAAAC
1 CAAACACAAAC
29920 CAAACACAAAC
1 CAAACACAAAC
29931 CAAACACA
1 CAAACACA
29939 TACATTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.63, C:0.37, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAACACAAAC
Found at i:30065 original size:15 final size:15
Alignment explanation
Indices: 30045--30076 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
30035 TAATAATTTA
30045 TTATTTTATTAAATT
1 TTATTTTATTAAATT
*
30060 TTATTTTATTAACTT
1 TTATTTTATTAAATT
30075 TT
1 TT
30077 TATTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTTTATTAAATT
Found at i:37637 original size:30 final size:30
Alignment explanation
Indices: 37601--37673 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
37591 CCCGAAGAAC
*
37601 CTATCCAGAGGTCATAGAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
37631 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
37661 CTGTCCATAGGTC
1 CTATCCAGAGGTC
37674 CCGAATAACT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:40868 original size:21 final size:21
Alignment explanation
Indices: 40842--40892 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
40832 CTTGATGGGT
40842 ATGTGAGCAAGCTGCTATGAC
1 ATGTGAGCAAGCTGCTATGAC
40863 ATGTGAGCAAGCTGCTATGAC
1 ATGTGAGCAAGCTGCTATGAC
*
40884 ATGAGAGCA
1 ATGTGAGCA
40893 TGGATACTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (21 bp):
ATGTGAGCAAGCTGCTATGAC
Found at i:44451 original size:27 final size:27
Alignment explanation
Indices: 44413--44466 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
44403 CCTTATCTTG
* *
44413 CTTTCGTTTACTTTGTCCTCAATTTAT
1 CTTTCGTTTACTTCGTCCTCAACTTAT
* *
44440 CTTTCTTTTACTTCGTCTTCAACTTAT
1 CTTTCGTTTACTTCGTCCTCAACTTAT
44467 GTCCAAATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.24, G:0.06, T:0.56
Consensus pattern (27 bp):
CTTTCGTTTACTTCGTCCTCAACTTAT
Found at i:45183 original size:15 final size:15
Alignment explanation
Indices: 45163--45339 Score: 214
Period size: 15 Copynumber: 11.5 Consensus size: 15
45153 TAATAAGGTT
45163 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
45178 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
*
45192 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
45207 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
45222 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
* *
45237 ATTTATTATATAATA
1 ATTTATTTTAAAATA
*
45252 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
45267 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
45282 ATTTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
45301 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
45319 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
45333 ATTTATT
1 ATTTATT
45340 AGTATGGATT
Statistics
Matches: 148, Mismatches: 6, Indels: 17
0.87 0.04 0.10
Matches are distributed among these distances:
14 25 0.17
15 102 0.69
16 4 0.03
17 2 0.01
18 1 0.01
19 1 0.01
20 2 0.01
21 4 0.03
22 7 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:45357 original size:32 final size:32
Alignment explanation
Indices: 45319--46007 Score: 350
Period size: 32 Copynumber: 23.4 Consensus size: 32
45309 TTTTAAAATA
*
45319 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45351 ATTTATTTT-AA-AA--TA-T-G---A-ATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45373 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45405 ATTTATTTT--A-AA---A-TA-TA-A-ATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45427 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45459 ATTTATTTT-AA-AA--TA-T-G---A-ATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45481 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
*
45513 ATTTA-TTT---TAA---A--A-TATCGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
*
45535 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45567 ATTTATTTT-AA-AA--TA-T-G----GATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
*
45589 ATTTATTTTAAATAATTTATTAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
** **
45621 ATTTATTTTAAA-ATATGGATT-G-ATTTATT-
1 ATTTATTTTAAATA-ATTTATTAGTATAGATTG
* * * * *
45650 ATTGTAGTTGTATGGATTGATTTATT--T-TA-AATA
1 ATT-TA-TT-T-T-AAATAATTTATTAGTATAGATTG
* * * * *
45683 ATTTATTAGTATGGATTGATTTATTTTA-AATA-ATTT
1 ATTTATT--T-T-AAATAATTTA--TTAGTATAGATTG
* * * * *
45719 ATTAGTATTGATTGATTTATTT-TAAAATATAGATTG
1 ATT--TATT--TTAAATAATTTAT-TAGTATAGATTG
*
45755 ATTTA--TT--AT--TGTAGTT-GTAT-GAATTG
1 ATTTATTTTAAATAATTTA-TTAGTATAG-ATTG
* *
45781 ATTTATTTTAAATAATTTATTAATATAAATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45813 ATTTA-TTT---TAA---A--A-TATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
45835 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
*
45867 ATTTATTTTAAATAATTTATTTGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
*
45899 ATTTATTTTAAAAAATTTATTAGTATA-AGTTG
1 ATTTATTTTAAATAATTTATTAGTATAGA-TTG
*
45931 ATTTATTTTAAATAATTTATTTGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTG
* *
45963 ATTTATTTTAAAAAAATTTATTAGTATGGATTG
1 ATTTATTTT-AAATAATTTATTAGTATAGATTG
45996 ATTTATTTTAAA
1 ATTTATTTTAAA
46008 ATATAGATTG
Statistics
Matches: 523, Mismatches: 41, Indels: 186
0.70 0.05 0.25
Matches are distributed among these distances:
22 79 0.15
23 16 0.03
24 9 0.02
25 7 0.01
26 30 0.06
27 6 0.01
28 19 0.04
29 9 0.02
30 20 0.04
31 25 0.05
32 226 0.43
33 36 0.07
34 11 0.02
35 3 0.01
36 21 0.04
37 1 0.00
38 5 0.01
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATAGATTG
Found at i:45358 original size:22 final size:22
Alignment explanation
Indices: 45342--45384 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
45332 AATTTATTAG
*
45342 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
45364 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
45385 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:45385 original size:54 final size:54
Alignment explanation
Indices: 45319--45975 Score: 641
Period size: 54 Copynumber: 11.8 Consensus size: 54
45309 TTTTAAAATA
*
45319 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
*
45373 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATAAATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
45427 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
45481 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATCG-ATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATAT-GAATTG
* *
45535 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
* *
45589 ATTTATTTTAAATAATTTATTAATATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
* *
45643 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATAGATTGATTTATTTT-AA-AA--TA-T-G-A---ATTG
*
45701 ATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAAATAT-AGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGA-ATTG
* ** *
45755 ATTTA--TT--AT--TGTAGTT-GTAT-GAATTGATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAATAATTTA-TTAGTATAG-ATTGATTTATTTTAAAAT-ATGAATTG
* ** * * * * *
45803 ATATAAATTGATTTATTT-TAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTAT-TAGTATAGATTGATTTATTTT-AA-AA--TA-T-G---A-ATTG
*
45867 ATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAAAAATTTATTAGTATAAGTTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTT--AAAA--TA-T-G---AA-TTG
*
45931 ATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAAA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
45976 AAATTTATTA
Statistics
Matches: 524, Mismatches: 32, Indels: 86
0.82 0.05 0.13
Matches are distributed among these distances:
47 5 0.01
48 49 0.09
49 6 0.01
50 8 0.02
52 8 0.02
53 2 0.00
54 294 0.56
55 2 0.00
56 2 0.00
57 2 0.00
58 10 0.02
59 3 0.01
60 4 0.01
62 8 0.02
63 5 0.01
64 112 0.21
65 4 0.01
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGAATTG
Found at i:45421 original size:22 final size:22
Alignment explanation
Indices: 45396--45438 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
45386 AATTTATTAG
*
45396 TATAGATTGATTTATTTTAAAA
1 TATAAATTGATTTATTTTAAAA
45418 TATAAATTGATTTATTTTAAA
1 TATAAATTGATTTATTTTAAA
45439 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
TATAAATTGATTTATTTTAAAA
Found at i:45583 original size:22 final size:22
Alignment explanation
Indices: 45558--45600 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
45548 AATTTATTAG
45558 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
45580 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
45601 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:45800 original size:14 final size:15
Alignment explanation
Indices: 45776--45984 Score: 86
Period size: 18 Copynumber: 12.8 Consensus size: 15
45766 TAGTTGTATG
*
45776 AATTGATTTATTTTA
1 AATTAATTTATTTTA
45791 AA-TAATTTATTAATATA
1 AATTAATTTATT--T-TA
*
45808 AATTGATTTATTTTAA
1 AATTAATTTATTTT-A
45824 AATATAGATTGATTTATTTTA
1 AAT-T--A---ATTTATTTTA
45845 AA-TAATTTATTAGTATA
1 AATTAATTTATT--T-TA
* *
45862 GATTGATTTATTTTA
1 AATTAATTTATTTTA
45877 AA-TAATTTATTTGTA
1 AATTAATTTATTT-TA
*
45892 TAGATTGATTTATTTTA
1 -A-ATTAATTTATTTTA
*
45909 AA-AAATTTATTAGTATA
1 AATTAATTTATT--T-TA
* *
45926 AGTTGATTTATTTTA
1 AATTAATTTATTTTA
45941 AA-TAATTTATTTGTA
1 AATTAATTTATTT-TA
*
45956 TAGATTGATTTATTTTA
1 -A-ATTAATTTATTTTA
**
45973 AAAAAATTTATT
1 AATTAATTTATT
45985 AGTATGGATT
Statistics
Matches: 148, Mismatches: 19, Indels: 54
0.67 0.09 0.24
Matches are distributed among these distances:
14 40 0.27
15 22 0.15
16 14 0.09
17 18 0.12
18 41 0.28
19 1 0.01
21 3 0.02
22 9 0.06
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (15 bp):
AATTAATTTATTTTA
Found at i:45827 original size:22 final size:22
Alignment explanation
Indices: 45802--45846 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
45792 ATAATTTATT
45802 AATATAAATTGATTTATTTTAA
1 AATATAAATTGATTTATTTTAA
*
45824 AATATAGATTGATTTATTTTAA
1 AATATAAATTGATTTATTTTAA
45846 A
1 A
45847 TAATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
AATATAAATTGATTTATTTTAA
Found at i:46089 original size:31 final size:31
Alignment explanation
Indices: 46054--46112 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
46044 AGTTGTATGG
* *
46054 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATATCAGTATTGCAAAACTAAA
46085 ATTATTTAAATATCAGTATTGCAAAACT
1 ATTATTTAAATATCAGTATTGCAAAACT
46113 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATATCAGTATTGCAAAACTAAA
Found at i:50185 original size:29 final size:31
Alignment explanation
Indices: 50135--50193 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 31
50125 TCTATAGTAC
50135 ATAATGCAATATGTTTTGTAAGTAAAACAAA
1 ATAATGCAATATGTTTTGTAAGTAAAACAAA
50166 ATAATGC-ATATG-TTTGTAAGTAAAACAA
1 ATAATGCAATATGTTTTGTAAGTAAAACAA
50194 TGTGATTCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 16 0.57
30 5 0.18
31 7 0.25
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (31 bp):
ATAATGCAATATGTTTTGTAAGTAAAACAAA
Found at i:52753 original size:3 final size:3
Alignment explanation
Indices: 52745--52780 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
52735 TACCCCCAAG
52745 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
52781 GTTTGTCTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:54257 original size:13 final size:13
Alignment explanation
Indices: 54239--54263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
54229 TTTTAATTTA
54239 AAAATATAAATAT
1 AAAATATAAATAT
54252 AAAATATAAATA
1 AAAATATAAATA
54264 ATTATTAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATATAAATAT
Found at i:54377 original size:3 final size:3
Alignment explanation
Indices: 54369--54444 Score: 145
Period size: 3 Copynumber: 25.7 Consensus size: 3
54359 CAAGGATCAC
54369 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
54416 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
54445 GCAAAAGTTA
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 70 0.97
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:68846 original size:13 final size:13
Alignment explanation
Indices: 68809--68848 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
68799 TTGATATTGA
68809 AAAATAAATA-TT
1 AAAATAAATATTT
*
68821 AAAATAATTTATTT
1 AAAATAA-ATATTT
68835 AAAATAAATATTT
1 AAAATAAATATTT
68848 A
1 A
68849 TTTATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 7 0.29
13 8 0.33
14 9 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATAAATATTT
Found at i:70291 original size:14 final size:15
Alignment explanation
Indices: 70272--70305 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
70262 GTCTGTAATT
70272 ATTTATTT-ATATAG
1 ATTTATTTAATATAG
*
70286 ATTTATTTAATATAT
1 ATTTATTTAATATAG
70301 ATTTA
1 ATTTA
70306 ATAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
ATTTATTTAATATAG
Found at i:70312 original size:3 final size:3
Alignment explanation
Indices: 70304--70382 Score: 140
Period size: 3 Copynumber: 26.3 Consensus size: 3
70294 AATATATATT
* *
70304 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
70352 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
70383 GATATGGATA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:71040 original size:230 final size:227
Alignment explanation
Indices: 70704--71505 Score: 1196
Period size: 230 Copynumber: 3.5 Consensus size: 227
70694 AGAATTATGC
* * *
70704 AAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * **
70769 TATGAACTCTTCCTGGCAGTGTTGATCCATCAAATGATGAATTCAAACAAAAAAATTGAACAAGT
66 TATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACAAGT
70834 TCTT-TTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
131 TCTTCTT-ATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* * * *
70898 GAAAAAATAATCCATCCAGTGATGAATTCAGAT
195 GAAAAGATGATCCATCAAATGATGAATTCAGAT
*
70931 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCT
1 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCT
70996 CATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACA
63 CATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACA
71061 AGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATGAACTCT
128 AGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACT-T
* * * * * *
71126 AC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAACC
189 TCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGA-T
71165 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCT
1 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCT
*
71230 CATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACA
63 CATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACA
* * *
71295 AATTCTTCTTATTATGAAC-TCTTCCTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTC
128 AGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* * *
71359 TGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
193 TGGAAAAGATGATCCATCAAATGATGAATTCAGAT
71394 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * * *
71459 TATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTCAAA
66 TATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAA
71506 TCTTTGCTAA
Statistics
Matches: 524, Mismatches: 38, Indels: 27
0.89 0.06 0.05
Matches are distributed among these distances:
226 56 0.11
227 49 0.09
229 49 0.09
230 156 0.30
231 3 0.01
232 1 0.00
233 65 0.12
234 141 0.27
236 1 0.00
237 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (227 bp):
AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACAAGT
TCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
AAAAGATGATCCATCAAATGATGAATTCAGAT
Found at i:71088 original size:117 final size:114
Alignment explanation
Indices: 70703--71505 Score: 1139
Period size: 117 Copynumber: 7.0 Consensus size: 114
70693 TAGAATTATG
* * *
70703 CAAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
70768 TTATGAACTCTTCCTGGCAGTGTTGATCCATCAAATGATGAATTCAAAC
66 TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
* ** *
70817 AAAAAAATTGAACAAGTTCTT-TTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 CAAAAGGTTGAACAAATTCTTCTT-ATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *** * * * *
70881 ATTATGAACT-TTCTCTGGAAAAAATAATCCATCCAGTGATGAATTCAGA-
65 ATTATGAACTCTTC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
* *
70930 TAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
70995 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
63 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
*
71047 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
*
71112 TCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
63 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
71164 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
*
71229 TCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
63 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
*
71281 CAAAAGGTTGAACAAATTCTTCTTATTATGAAC-TCTTCCTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * * **
71345 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTC-AGG
66 TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
*
71393 TAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * *
71458 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTCAAA
66 TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAA
71506 TCTTTGCTAA
Statistics
Matches: 633, Mismatches: 43, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
112 33 0.05
113 179 0.28
114 97 0.15
116 62 0.10
117 258 0.41
119 1 0.00
120 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (114 bp):
CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
Found at i:71341 original size:347 final size:341
Alignment explanation
Indices: 70703--71505 Score: 1146
Period size: 347 Copynumber: 2.3 Consensus size: 341
70693 TAGAATTATG
* *
70703 CAAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
70768 TTATGAACTCTTCCTGGCAGTGTTGATCCATCAAATGATGAATTCAAACAAAAAAATTGAACAAG
66 TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAAATTGAACAAA
*
70833 TTCTTTTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
131 TTCTTTTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTACTCTG
* * * *
70898 GAAAAAATAATCCATCCAGTGATGAATTCAGATAAAAGGTTGAACAAATTCTTCTCATTATGAAC
196 GAAAAAATAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * * *
70963 TTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCA
261 TTCTTCCTCCTTCTTCAGAT-A-GAGTTCTTCTCATTATGAACTCTTCCTGGAAAAGCTGATCCA
71028 TCAAATGATGAATTCAAAC
324 TCAAATGATGAATTC-AAC
71047 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGATGAGTTCTTC
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
* * **
71112 TCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAAC
63 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAAATTGAAC
71177 AAATTCTTCTT-ATTATGAACTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCTCATTATGAACT
128 AAATTCTT-TTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACT
* *** * *
71241 CTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAACCAAAAGGTTGAACAAATTCTTCTT
189 -TACTCTGGAAAAAATAATCCATCAAATGATGAATTCAAA-CAAAAGGTTGAACAAATTCTTCTC
* *
71305 ATTATGAAC-TCTTCCTCCTTCTTCAGAT-GAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
252 ATTATGAACTTCTTCCTCCTTCTTCAGATAGAGTTCTTCTCATTATGAACTCTTCCTGGAAAAGC
* **
71368 TGATCCATCAAATGATGGATTCAGG
317 TGATCCATCAAATGATGAATTCAAC
* *
71393 TAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * *
71458 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTCAAA
66 TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAA
71506 TCTTTGCTAA
Statistics
Matches: 413, Mismatches: 37, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
343 56 0.14
344 48 0.12
346 49 0.12
347 155 0.38
348 2 0.00
349 1 0.00
350 69 0.17
351 33 0.08
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (341 bp):
CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAAATTGAACAAA
TTCTTTTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTACTCTG
GAAAAAATAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCCTCCTTCTTCAGATAGAGTTCTTCTCATTATGAACTCTTCCTGGAAAAGCTGATCCATC
AAATGATGAATTCAAC
Found at i:72254 original size:84 final size:84
Alignment explanation
Indices: 72146--72552 Score: 621
Period size: 84 Copynumber: 4.9 Consensus size: 84
72136 GTAGTTCTTA
* *
72146 CCAAACCAGATCAGATAACTCAAAGAATAATTCCAGAAGATGCTATTG-GCAAATTCATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
*
72210 TATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
*
72229 CCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCATATTCATCTTCC
1 CCAAACCAGATCAG-ATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCC
*
72293 CAATTCAATGATTGGTTCTG
65 AAATTCAATGATTGGTTCTG
* * * *
72313 CTAAACCAGATCAGATAACTCAAAGAACACTTCCAAAAGATGCTATTGAACACATT-ATTCTTCC
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCA-TCTTCC
72377 AAATTCAATGATTGGTTCTG
65 AAATTCAATGATTGGTTCTG
72397 TCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCC
1 -CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCC
*
72460 ACATTCAATGATTGGTTCTG
65 AAATTCAATGATTGGTTCTG
*
72480 CCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCATATT-ATTCTTC
1 CCAAACCAGATCAG-ATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCA-TCTTC
72543 CAAATTCAAT
64 CAAATTCAAT
72553 AACACTTCCA
Statistics
Matches: 297, Mismatches: 17, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
82 2 0.01
83 91 0.31
84 203 0.68
85 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (84 bp):
CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
AATTCAATGATTGGTTCTG
Found at i:72417 original size:167 final size:168
Alignment explanation
Indices: 72146--72552 Score: 639
Period size: 167 Copynumber: 2.4 Consensus size: 168
72136 GTAGTTCTTA
* *
72146 CCAAACCAGATCAGATAACTCAAAGAATAATTCCAGAAGATGCTATTG-GCAAATTCA-TCTTCC
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATT-ATTCTTCC
*
72209 ATATTCAATGATTGGTTCTGCCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCT
65 AAATTCAATGATTGGTTCTGCCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCT
*
72274 A-TGAGCATATTCATCTTCC-CAATTCAATGATTGGTTCTG
130 ATTG-GCAAATTCATCTTCCAC-ATTCAATGATTGGTTCTG
* * * *
72313 CTAAACCAGATCAGATAACTCAAAGAACACTTCCAAAAGATGCTATTGAACACATTATTCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTATTCTTCCA
72378 AATTCAATGATTGGTTCTGTCC-AACCAGATCAG-ATAACTCAAAGAACACTTCCAGAAGATGCT
66 AATTCAATGATTGGTTCTG-CCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCT
72441 ATTGGCAAATTCATCTTCCACATTCAATGATTGGTTCTG
130 ATTGGCAAATTCATCTTCCACATTCAATGATTGGTTCTG
*
72480 CCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCATATTATTCTTCC
1 CCAAACCAGATCAG-ATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTATTCTTCC
72544 AAATTCAAT
65 AAATTCAAT
72553 AACACTTCCA
Statistics
Matches: 222, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
167 146 0.66
168 74 0.33
169 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (168 bp):
CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTATTCTTCCA
AATTCAATGATTGGTTCTGCCAAACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTA
TTGGCAAATTCATCTTCCACATTCAATGATTGGTTCTG
Found at i:72595 original size:48 final size:47
Alignment explanation
Indices: 72506--72600 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 47
72496 TAACTCAAAG
*
72506 AACACTTCCAGAAGATGCTATGAGCATATTATTCTTCCAAATTCAAT
1 AACACTTCCAGAAGATGCTATGAGCACATTATTCTTCCAAATTCAAT
72553 AACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAATTCAAT
1 AACACTTCCAGAAGATGCTA-TGAGCACATTATTCTTCCAAATTCAAT
72601 GATTGGTTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 20 0.43
48 26 0.57
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.32
Consensus pattern (47 bp):
AACACTTCCAGAAGATGCTATGAGCACATTATTCTTCCAAATTCAAT
Found at i:72656 original size:131 final size:132
Alignment explanation
Indices: 72422--72669 Score: 405
Period size: 131 Copynumber: 1.9 Consensus size: 132
72412 TAACTCAAAG
* *
72422 AACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCACATTCAATGATTGGTTCTGCCAAACC
1 AACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAAATTCAATGATTGGTTATGCCAAACC
*
72487 AGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCATATTATTCTTCCAAATTCA
66 AGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAATTCA
72551 AT
131 AT
*
72553 AACACTTCCAGAAGATGCTATTGAGCACATT-ATTCTTCCAAATTCAATGATTGGTTATGTCC-A
1 AACACTTCCAGAAGATGCTATTG-GCAAATTCA-TCTTCCAAATTCAATGATTGGTTATG-CCAA
72616 ACCAGATCAG-ATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTAT
63 ACCAGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTAT
72670 ATTTGTTCCA
Statistics
Matches: 109, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
131 55 0.50
132 52 0.48
133 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (132 bp):
AACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAAATTCAATGATTGGTTATGCCAAACC
AGATCAGAATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAATTCA
AT
Found at i:73436 original size:16 final size:18
Alignment explanation
Indices: 73395--73442 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
73385 AAATCATAGA
*
73395 AAAATAAATTGAATTTCC
1 AAAATAAATTGAATCTCC
73413 AAAAATAAATTGAATCT-C
1 -AAAATAAATTGAATCTCC
73431 -AAATAAATTGAA
1 AAAATAAATTGAA
73443 CTTGAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 12 0.43
18 1 0.04
19 15 0.54
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.29
Consensus pattern (18 bp):
AAAATAAATTGAATCTCC
Found at i:73783 original size:7 final size:7
Alignment explanation
Indices: 73771--73808 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
73761 CTTGACCCCC
73771 CTTTTTT
1 CTTTTTT
73778 CTTTTTT
1 CTTTTTT
73785 CTTTTTT
1 CTTTTTT
73792 -TTTTCTT
1 CTTTT-TT
*
73799 TTTTTTT
1 CTTTTTT
73806 CTT
1 CTT
73809 CAAGCATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 4 0.14
7 20 0.71
8 4 0.14
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
CTTTTTT
Found at i:73792 original size:10 final size:10
Alignment explanation
Indices: 73779--73808 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
73769 CCCTTTTTTC
73779 TTTTTTCTTTT
1 TTTTTTC-TTT
73790 TTTTTTCTTT
1 TTTTTTCTTT
73800 TTTTTTCTT
1 TTTTTTCTT
73809 CAAGCATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:73795 original size:11 final size:11
Alignment explanation
Indices: 73774--73805 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
73764 GACCCCCCTT
73774 TTTTCTTTTTTC
1 TTTT-TTTTTTC
73786 TTTTTTTTTTC
1 TTTTTTTTTTC
73797 TTTTTTTTT
1 TTTTTTTTT
73806 CTTCAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:84159 original size:16 final size:15
Alignment explanation
Indices: 84138--84204 Score: 53
Period size: 16 Copynumber: 4.3 Consensus size: 15
84128 CTTTGACAGA
84138 AAAATAATAATGAAAT
1 AAAATAATAAT-AAAT
* ***
84154 AAAATACTTGCAAAT
1 AAAATAATAATAAAT
* *
84169 AAAATAAAAATATTAT
1 AAAATAATAATA-AAT
84185 AAAATAATAAATAAAT
1 AAAATAAT-AATAAAT
84201 AAAA
1 AAAA
84205 AATTTGAAAA
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
15 11 0.30
16 22 0.59
17 4 0.11
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (15 bp):
AAAATAATAATAAAT
Found at i:86354 original size:14 final size:15
Alignment explanation
Indices: 86335--86368 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
86325 GTCTGTAATT
86335 ATTTATTT-ATATAG
1 ATTTATTTAATATAG
*
86349 ATTTATTTAATATAT
1 ATTTATTTAATATAG
86364 ATTTA
1 ATTTA
86369 ATAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
ATTTATTTAATATAG
Found at i:86375 original size:3 final size:3
Alignment explanation
Indices: 86367--86495 Score: 233
Period size: 3 Copynumber: 43.3 Consensus size: 3
86357 AATATATATT
86367 TAA TAA TAA TAA TAA TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
86414 TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
86462 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
86496 GATATGGATA
Statistics
Matches: 121, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
2 2 0.02
3 119 0.98
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:90914 original size:2 final size:2
Alignment explanation
Indices: 90907--90962 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
90897 TATGTTATTA
90907 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90949 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
90963 TAATTCTAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94820 original size:57 final size:57
Alignment explanation
Indices: 94749--94862 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
94739 TTAGCAAAGG
* *
94749 TGATTAAACAAGGAATCTGATTATCTTTGATTTGTCTAGGTCCTAAAACAAAAGCTT
1 TGATTAAACAAGGAATCTGATCATCTTTGATTTGTCTAGATCCTAAAACAAAAGCTT
*
94806 TGATTAAACAAGGAATCTGGTCATCTTTGATTTGTCTAGATCCTAAAACAAAAGCTT
1 TGATTAAACAAGGAATCTGATCATCTTTGATTTGTCTAGATCCTAAAACAAAAGCTT
94863 GGTTGCACAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (57 bp):
TGATTAAACAAGGAATCTGATCATCTTTGATTTGTCTAGATCCTAAAACAAAAGCTT
Found at i:98099 original size:34 final size:35
Alignment explanation
Indices: 98027--98100 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
98017 AACTGAGAAA
98027 ATTT-AAGAAAATTTAAATTTAAAGTTTCCATCTT
1 ATTTAAAGAAAATTTAAATTTAAAGTTTCCATCTT
* *
98061 -TTTAAAGAAAATTTAAATTTAAA-TTTTCATTTT
1 ATTTAAAGAAAATTTAAATTTAAAGTTTCCATCTT
98094 ATTTAAA
1 ATTTAAA
98101 TAAATTTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
33 11 0.31
34 25 0.69
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.47
Consensus pattern (35 bp):
ATTTAAAGAAAATTTAAATTTAAAGTTTCCATCTT
Found at i:98106 original size:21 final size:22
Alignment explanation
Indices: 98071--98114 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
98061 TTTAAAGAAA
98071 ATTTAAATTTAAATTTTCATTTT
1 ATTTAAA-TTAAATTTTCATTTT
98094 ATTTAAA-TAAATTTTCATTTT
1 ATTTAAATTAAATTTTCATTTT
98115 CTATTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 14 0.67
23 7 0.33
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTTAAATTAAATTTTCATTTT
Found at i:101441 original size:29 final size:26
Alignment explanation
Indices: 101408--101460 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 26
101398 TTTAAATAGT
*
101408 TATTATATTTTATATTAATAATTATATAA
1 TATTAT-TTTT-TATTAA-AATAATATAA
101437 TATTATTTTTTATTAAAATAATAT
1 TATTATTTTTTATTAAAATAATAT
101461 TTATAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 6 0.26
28 4 0.17
29 6 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TATTATTTTTTATTAAAATAATATAA
Found at i:101643 original size:17 final size:16
Alignment explanation
Indices: 101621--101674 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
101611 TAATGTTAAT
101621 ATTTAAATTTATTTTTA
1 ATTTAAA-TTATTTTTA
* *
101638 ATTTAAAGTTATTATGA
1 ATTTAAA-TTATTTTTA
* *
101655 ATTTATATTAATTTTA
1 ATTTAAATTATTTTTA
101671 ATTT
1 ATTT
101675 TTTATAATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 10 0.33
17 20 0.67
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (16 bp):
ATTTAAATTATTTTTA
Done.