Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008796.1 Hibiscus syriacus cultivar Beakdansim tig00111941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1607457
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 4 of 7
Found at i:846025 original size:17 final size:18
Alignment explanation
Indices: 845992--846025 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
845982 CCGCTACTAG
845992 TGAACCGGTCAGAACCAC
1 TGAACCGGTCAGAACCAC
*
846010 TGAACCGTTC-GAACCA
1 TGAACCGGTCAGAACCA
846026 GACGGACTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.15
Consensus pattern (18 bp):
TGAACCGGTCAGAACCAC
Found at i:847300 original size:21 final size:21
Alignment explanation
Indices: 847276--847367 Score: 91
Period size: 21 Copynumber: 4.4 Consensus size: 21
847266 TTGAAAATCG
*
847276 CGTTGCGATAATCTACAGTGT
1 CGTTGCGATAGTCTACAGTGT
* *
847297 CGTTGTGATAGTATACAGTGT
1 CGTTGCGATAGTCTACAGTGT
* * *
847318 CGTTGCGAT--TTTCCA-TTT
1 CGTTGCGATAGTCTACAGTGT
847336 CGCGTTGCGATAGTCTACAGTGT
1 --CGTTGCGATAGTCTACAGTGT
847359 CGTTGCGAT
1 CGTTGCGAT
847368 TTTCCATTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.04
19 4 0.07
20 9 0.16
21 35 0.62
22 4 0.07
23 2 0.04
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.37
Consensus pattern (21 bp):
CGTTGCGATAGTCTACAGTGT
Found at i:847355 original size:41 final size:41
Alignment explanation
Indices: 847297--847604 Score: 440
Period size: 41 Copynumber: 7.4 Consensus size: 41
847287 TCTACAGTGT
* *
847297 CGTTGTGATAGTATACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
847338 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
*
847379 CGTTGCGATAGTGTACAGTCATTGCGATCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAG----T--G-TCGTTGCGATTTTCCATTTCG
* * *
847427 CGTTGCGATAGTGTACAGTGTCATTGCGATTTTCCATCTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
* *
847468 CATTGCGATAGTGTACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
847509 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
* *
847550 CGTTACGATAGTCTACAGTGTCGTTGCGATTTTCCAAATT--
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCC-ATTTCG
847590 CGTTGCGATAGTCTA
1 CGTTGCGATAGTCTA
847605 TAGTAAATTA
Statistics
Matches: 246, Mismatches: 13, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
40 14 0.06
41 186 0.76
42 4 0.02
44 1 0.00
45 1 0.00
47 1 0.00
48 39 0.16
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.38
Consensus pattern (41 bp):
CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
Found at i:847447 original size:130 final size:123
Alignment explanation
Indices: 847297--847604 Score: 440
Period size: 130 Copynumber: 2.5 Consensus size: 123
847287 TCTACAGTGT
*
847297 CGTTGTGATAGTATACAGTGTCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGT
1 CGTTGCGATAGTATACAGTGTCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGT
*
847362 TGCGATTTTCCATTTCGCGTTGCGATAGTGTACAGTCATTGCGATCGTTGCGATTTTCCATTTCG
66 TGCGATTTTCCATTTCGCGTTGCGATAGTCTACAG----T--G-TCGTTGCGATTTTCCATTTCG
* * * * *
847427 CGTTGCGATAGTGTACAGTGTCATTGCGATTTTCCATCTCGCATTGCGATAGTGTACAGTGTCGT
1 CGTTGCGATAGTATACAGTGTCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGT
847492 TGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
66 TGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
* * *
847550 CGTTACGATAGTCTACAGTGTCGTTGCGATTTTCCAAATT--CGTTGCGATAGTCTA
1 CGTTGCGATAGTATACAGTGTCGTTGCGATTTTCC-ATTTCGCGTTGCGATAGTCTA
847605 TAGTAAATTA
Statistics
Matches: 163, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
122 13 0.08
123 53 0.33
124 3 0.02
126 1 0.01
130 93 0.57
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.38
Consensus pattern (123 bp):
CGTTGCGATAGTATACAGTGTCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGT
TGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
Found at i:847455 original size:21 final size:21
Alignment explanation
Indices: 847429--847497 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
847419 CCATTTCGCG
847429 TTGCGATAGTGTACAGTGTCA
1 TTGCGATAGTGTACAGTGTCA
* * *
847450 TTGCGAT--TTTCCA-TCTCGCA
1 TTGCGATAGTGTACAGTGT--CA
*
847470 TTGCGATAGTGTACAGTGTCG
1 TTGCGATAGTGTACAGTGTCA
847491 TTGCGAT
1 TTGCGAT
847498 TTTCCATTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
18 2 0.06
19 4 0.11
20 9 0.25
21 15 0.42
22 4 0.11
23 2 0.06
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (21 bp):
TTGCGATAGTGTACAGTGTCA
Found at i:847699 original size:6 final size:6
Alignment explanation
Indices: 847688--847719 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
847678 GACACGTATT
847688 ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
847720 CGAGACGGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.31, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:848201 original size:5 final size:5
Alignment explanation
Indices: 848191--848227 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
848181 CCGCCGCCGC
**
848191 CGTCT CGTCT CGGGT CGTCT CGTCT CGTCT CGTCT CG
1 CGTCT CGTCT CGTCT CGTCT CGTCT CGTCT CGTCT CG
848228 GATCGTGGTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.38, G:0.27, T:0.35
Consensus pattern (5 bp):
CGTCT
Found at i:854077 original size:21 final size:20
Alignment explanation
Indices: 854053--854091 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
854043 ATCGTTTTAC
*
854053 TATGAGTTAAAAATGTTTATT
1 TATGAATTAAAAAT-TTTATT
*
854074 TATGAATTATAAATTTTA
1 TATGAATTAAAAATTTTA
854092 ATTAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (20 bp):
TATGAATTAAAAATTTTATT
Found at i:864441 original size:209 final size:209
Alignment explanation
Indices: 864038--865055 Score: 1600
Period size: 202 Copynumber: 4.8 Consensus size: 209
864028 TATTGATTAA
** * *
864038 GTTTAAATCATTCAATAAAAACACACTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAA
1 GTTT-AATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAA
*
864103 TGTATGTAGGGGTGGAAACAATCTATTATTTTAGAAAAAATATTAAATTTAATTTAACACATTAG
65 TGTATGTAGAGGTGGAAACAATCTATTATTTTAG-AAAAATATTAAATTTAATTTAACACATTAG
*
864168 GATTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGACTATAATGTTTTTGATATTTTTAT
129 GATTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGACTATAATGTTTATGATATTTTTAT
864233 AAATTTAGGGTTTAGG
194 AAATTTAGGGTTTAGG
*
864249 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAATGGCAAAT
1 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAAT
864314 GTATGTAGAGGTGGAAACAATCTATTATTTTAGAAAAATATTAAATTTAATTTAACACATTAGGA
66 GTATGTAGAGGTGGAAACAATCTATTATTTTAGAAAAATATTAAATTTAATTTAACACATTAGGA
*
864379 TTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGACTATAATGTGTATGATATTTTTAT-A
131 TTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGACTATAATGTTTATGATATTTTTATAA
864443 A---A---TTTAGG
196 ATTTAGGGTTTAGG
864451 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAAT
1 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAAT
*
864516 GCATGTAGAGGTGGAAACAATCTATTATTTTAGAAAAATATTAAATTTAATTTAACACATTAGGA
66 GTATGTAGAGGTGGAAACAATCTATTATTTTAGAAAAATATTAAATTTAATTTAACACATTAGGA
*
864581 TTAGTGAATAAATATTTAAGGTTGTGCAAGCAGAGCCGACTATAATGTTTATGATATTTTTATAA
131 TTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGACTATAATGTTTATGATATTTTTATAA
*
864646 ATTTAGGGTTTAAG
196 ATTTAGGGTTTAGG
*
864660 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGTTCATATCAGTGGCAAAT
1 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAAT
* * *
864725 GTATGTAGAGGTGGAAACAATCTATTATTTTAGAGAAATTATTAAATTTAATTTAACATATTAAG
66 GTATGTAGAGGTGGAAACAATCTATTATTTTAGA-AAAATATTAAATTTAATTTAACACATTAGG
* *
864790 ATTAGTGAATAAATATTTAAGGTTGTGCAAACGGAGCCGACATATAATATTTATGATATTTTTAT
130 ATTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGAC-TATAATGTTTATGATATTTTTAT
864855 AAATTTAAGGTTTAAAGTTTAGG
194 AAATTT-AGG------GTTTAGG
* ** * * *
864878 GTTTAATTATTCAATAAAAACACATTTTTGTGTGAAAGCATCGAGAGCTCGTATCAGTGGCAAAT
1 GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAAT
* * * *
864943 GTATGGAGAGATGGAAACAATCTATTATTTTAGAAAAAAATATTAAATTTAATTTAATACATTAA
66 GTATGTAGAGGTGGAAACAATCTATTATTTTAG--AAAAATATTAAATTTAATTTAACACATTAG
* *
865008 GATTAGTGAATAAATATTTAAGGTTGTGCACGCGGAGCCAACATATAA
129 GATTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGAC-TATAA
865056 CGAGGGGTAT
Statistics
Matches: 752, Mismatches: 37, Indels: 28
0.92 0.05 0.03
Matches are distributed among these distances:
202 195 0.26
203 2 0.00
205 1 0.00
206 1 0.00
208 2 0.00
209 195 0.26
210 154 0.20
211 32 0.04
212 3 0.00
218 95 0.13
219 71 0.09
220 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (209 bp):
GTTTAATCATTTGATAAAAACATATTTTTGGGTGAAAGCATCGAGAGCTCATATCAGTGGCAAAT
GTATGTAGAGGTGGAAACAATCTATTATTTTAGAAAAATATTAAATTTAATTTAACACATTAGGA
TTAGTGAATAAATATTTAAGGTTGTGCAAGCGGAGCCGACTATAATGTTTATGATATTTTTATAA
ATTTAGGGTTTAGG
Found at i:866542 original size:16 final size:16
Alignment explanation
Indices: 866521--866555 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
866511 AAATTTCGGT
*
866521 GAGCTTAACGAGCATC
1 GAGCTTAACGAGCAAC
866537 GAGCTTAACGAGCAAC
1 GAGCTTAACGAGCAAC
866553 GAG
1 GAG
866556 TTGAGCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.29, T:0.14
Consensus pattern (16 bp):
GAGCTTAACGAGCAAC
Found at i:866603 original size:26 final size:27
Alignment explanation
Indices: 866572--866648 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 27
866562 AATAAATTTT
866572 TTTAACGAGCACGAGTCAAACAAA-AA
1 TTTAACGAGCACGAGTCAAACAAATAA
**
866598 TTTAACGAGCTAAACGAG-C-AACAAATTT
1 TTTAACGAGC---ACGAGTCAAACAAATAA
866626 TCTTAACGAGCACGAGTCAAACA
1 T-TTAACGAGCACGAGTCAAACA
866649 CTGTCCAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
26 15 0.36
27 7 0.17
28 6 0.14
29 14 0.33
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (27 bp):
TTTAACGAGCACGAGTCAAACAAATAA
Found at i:866935 original size:21 final size:21
Alignment explanation
Indices: 866910--866999 Score: 137
Period size: 21 Copynumber: 4.3 Consensus size: 21
866900 ATTTCTTTTC
866910 CGCAACGCGATTTTCCAAATT
1 CGCAACGCGATTTTCCAAATT
866931 CGCAACGCGATTTTCCAAATT
1 CGCAACGCGATTTTCCAAATT
866952 CGCAACGCGATTTTCCAAATT
1 CGCAACGCGATTTTCCAAATT
* * *
866973 TGCAACACGGAATTT-CAAATT
1 CGCAACGC-GATTTTCCAAATT
866994 CGCAAC
1 CGCAAC
867000 TTGATTTCTG
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
21 59 0.92
22 5 0.08
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (21 bp):
CGCAACGCGATTTTCCAAATT
Found at i:867094 original size:40 final size:40
Alignment explanation
Indices: 867050--867128 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
867040 ACAAGTTTCC
*
867050 TTTTCCCAACAAAATTTTCTAAATCGCAACACAAATTTTG
1 TTTTCCCAACAAAATTTTCGAAATCGCAACACAAATTTTG
* *** *
867090 TTTTCGCAACTCGATTTTCGAATTCGCAACACAAATTTT
1 TTTTCCCAACAAAATTTTCGAAATCGCAACACAAATTTT
867129 AATTTCGCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (40 bp):
TTTTCCCAACAAAATTTTCGAAATCGCAACACAAATTTTG
Found at i:867096 original size:20 final size:20
Alignment explanation
Indices: 867073--867140 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
867063 ATTTTCTAAA
*
867073 TCGCAACACAAATTTTGTTT
1 TCGCAACACAAATTTTGATT
* * *
867093 TCGCAACTC-GATTTTCGAAT
1 TCGCAACACAAATTTT-GATT
*
867113 TCGCAACACAAATTTTAATT
1 TCGCAACACAAATTTTGATT
867133 TCGCAACA
1 TCGCAACA
867141 GCTTTTATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 5 0.13
20 28 0.74
21 5 0.13
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (20 bp):
TCGCAACACAAATTTTGATT
Found at i:867135 original size:40 final size:40
Alignment explanation
Indices: 867063--867139 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
867053 TCCCAACAAA
* **
867063 ATTTTCTAAATCGCAACACAAATTTTGTTTTCGCAACTCG
1 ATTTTCGAAATCGCAACACAAATTTTAATTTCGCAACTCG
*
867103 ATTTTCGAATTCGCAACACAAATTTTAATTTCGCAAC
1 ATTTTCGAAATCGCAACACAAATTTTAATTTCGCAAC
867140 AGCTTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.36
Consensus pattern (40 bp):
ATTTTCGAAATCGCAACACAAATTTTAATTTCGCAACTCG
Found at i:867332 original size:16 final size:15
Alignment explanation
Indices: 867297--867335 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
867287 TCCCCATCTC
*
867297 TAATTTTTTTTTAAA
1 TAATTTTTTTCTAAA
*
867312 TAATTTTATTTCTATA
1 TAATTTT-TTTCTAAA
867328 TAATTTTT
1 TAATTTTT
867336 CAATGATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTAAA
Found at i:868103 original size:24 final size:24
Alignment explanation
Indices: 868076--868129 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
868066 GTATTCGAAA
* *
868076 TTTGATCTTGGTCAATGCCCTGAC
1 TTTGATCTTAGTCAATACCCTGAC
* *
868100 TTTGATCTTAGTCAATACTCTGAT
1 TTTGATCTTAGTCAATACCCTGAC
868124 TTTGAT
1 TTTGAT
868130 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.44
Consensus pattern (24 bp):
TTTGATCTTAGTCAATACCCTGAC
Found at i:870685 original size:20 final size:20
Alignment explanation
Indices: 870648--870686 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
870638 TGCGAAAGTT
* *
870648 AAATTCGAAACGCGAAAATC
1 AAATTCGAAACACAAAAATC
*
870668 AAATTCGCAACACAAAAAT
1 AAATTCGAAACACAAAAAT
870687 TGCAACACGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.21, G:0.10, T:0.15
Consensus pattern (20 bp):
AAATTCGAAACACAAAAATC
Found at i:872198 original size:23 final size:23
Alignment explanation
Indices: 872139--872199 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
872129 TATGGAACTA
* *
872139 CGGTGCAATTCTACGCGGCACTC
1 CGGTGCAATTATATGCGGCACTC
* *
872162 CGGTGCAATTATATGTGGCACTT
1 CGGTGCAATTATATGCGGCACTC
872185 CGGTGCAATTATATG
1 CGGTGCAATTATATG
872200 AGTTGTGGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (23 bp):
CGGTGCAATTATATGCGGCACTC
Found at i:875213 original size:21 final size:21
Alignment explanation
Indices: 875187--875283 Score: 149
Period size: 21 Copynumber: 4.6 Consensus size: 21
875177 GTGAATCAGG
*
875187 CTCTTGAACGGTGGGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
*
875208 CTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
875229 CTCTTGAACGATGGGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
** *
875250 CTCTTGAACGATATGAGGAGC
1 CTCTTGAACGATGGGAGGGGC
875271 CTCTTGAACGATG
1 CTCTTGAACGATG
875284 ACAGGTGAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.37, T:0.22
Consensus pattern (21 bp):
CTCTTGAACGATGGGAGGGGC
Found at i:875449 original size:4 final size:4
Alignment explanation
Indices: 875428--875468 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
875418 GGGATGCTAA
* *
875428 AAAT AAAT TAAT ACAT AAAT AAAT AAAT AAAT -AAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
875469 TGCCGAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:875682 original size:21 final size:21
Alignment explanation
Indices: 875654--875706 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
875644 CCTCACCATG
*
875654 TCATCACGTAAAGTACCGACC
1 TCATCACGTAAAGCACCGACC
* * *
875675 TTATCACGCAAAGCACTGACC
1 TCATCACGTAAAGCACCGACC
875696 TCATCACGTAA
1 TCATCACGTAA
875707 CTCCCCTAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (21 bp):
TCATCACGTAAAGCACCGACC
Found at i:875905 original size:42 final size:42
Alignment explanation
Indices: 875821--875920 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
875811 GTGATGTAAT
* * * *
875821 AGGTGATGGCTCTCGGTGTGGAGATGTATAATCTGCTCGATC
1 AGGTGATGGCTCTCGATGTCGAGATGCAGAATCTGCTCGATC
* *
875863 AGGTGATGGCTCTCGATGTCGAGCTGCAGAATC-GACTTGATC
1 AGGTGATGGCTCTCGATGTCGAGATGCAGAATCTG-CTCGATC
875905 AGGTGATGGCTCTCGA
1 AGGTGATGGCTCTCGA
875921 AGTGGGGGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
41 1 0.02
42 50 0.98
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (42 bp):
AGGTGATGGCTCTCGATGTCGAGATGCAGAATCTGCTCGATC
Found at i:877439 original size:19 final size:20
Alignment explanation
Indices: 877417--877454 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
877407 AATATCGTGT
877417 TTCGAATT-CGAAAATAAAA
1 TTCGAATTGCGAAAATAAAA
**
877436 TTCGCGTTGCGAAAATAAA
1 TTCGAATTGCGAAAATAAA
877455 CGCGCTTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (20 bp):
TTCGAATTGCGAAAATAAAA
Found at i:877511 original size:20 final size:21
Alignment explanation
Indices: 877488--877531 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
877478 GTGTTGTGAA
877488 TTACAAATTCACGTTGC-AAT
1 TTACAAATTCACGTTGCAAAT
* * *
877508 TTACATATTCGCTTTGCAAAT
1 TTACAAATTCACGTTGCAAAT
877529 TTA
1 TTA
877532 GAAAATCGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (21 bp):
TTACAAATTCACGTTGCAAAT
Found at i:877564 original size:20 final size:20
Alignment explanation
Indices: 877531--877568 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
877521 TTGCAAATTT
*
877531 AGAAAATCGTGTTGCGAAAA
1 AGAAAATCGAGTTGCGAAAA
*
877551 AGAAATTCGAGTTGCGAA
1 AGAAAATCGAGTTGCGAA
877569 TTTCTAACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (20 bp):
AGAAAATCGAGTTGCGAAAA
Found at i:877900 original size:14 final size:13
Alignment explanation
Indices: 877880--877912 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
877870 TTCTATGTGT
877880 TTTTTTATTATTA
1 TTTTTTATTATTA
877893 TATTTTTATTATTA
1 T-TTTTTATTATTA
877907 TTTTTT
1 TTTTTT
877913 CTTCACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTATTATTA
Found at i:877939 original size:23 final size:24
Alignment explanation
Indices: 877895--877939 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
877885 TATTATTATA
**
877895 TTTTTATTATTATTTTTTCTTCAC
1 TTTTTATTATTATTTTCCCTTCAC
877919 TTTTTATT-TTATTTTCCCTTC
1 TTTTTATTATTATTTTCCCTTC
877940 TTTTAACGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (24 bp):
TTTTTATTATTATTTTCCCTTCAC
Found at i:880469 original size:20 final size:22
Alignment explanation
Indices: 880444--880483 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
880434 AGTCGTATAT
880444 AGCCG-TTGGGGATG-TTTTGG
1 AGCCGTTTGGGGATGATTTTGG
880464 AGCCGTTTGGGGATGATTTT
1 AGCCGTTTGGGGATGATTTT
880484 TATACTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.12, C:0.10, G:0.40, T:0.38
Consensus pattern (22 bp):
AGCCGTTTGGGGATGATTTTGG
Found at i:880535 original size:21 final size:21
Alignment explanation
Indices: 880511--880553 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
880501 CCCAGAATAG
*
880511 AGGGAATCGGTACCCCTTCAT
1 AGGGAATCGATACCCCTTCAT
880532 AGGGAATCGATACCCCTTCAT
1 AGGGAATCGATACCCCTTCAT
880553 A
1 A
880554 ATATTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (21 bp):
AGGGAATCGATACCCCTTCAT
Found at i:880615 original size:21 final size:21
Alignment explanation
Indices: 880589--880631 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
880579 CTGTTGAACA
880589 GGGGGGAATCGGTACCCCCTG
1 GGGGGGAATCGGTACCCCCTG
880610 GGGGGGAATCGGTACCCCCTG
1 GGGGGGAATCGGTACCCCCTG
880631 G
1 G
880632 ACATTCTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.44, T:0.14
Consensus pattern (21 bp):
GGGGGGAATCGGTACCCCCTG
Found at i:880864 original size:29 final size:31
Alignment explanation
Indices: 880832--880891 Score: 106
Period size: 29 Copynumber: 2.0 Consensus size: 31
880822 AAACTTTGAA
880832 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
880861 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
880892 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:883730 original size:34 final size:32
Alignment explanation
Indices: 883677--883740 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 32
883667 CCTTACAAAC
*
883677 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
*
883709 TCCCTAGCTTTTACACGGGCTAAGCTAGAACC
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACC
883741 AAAACCCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 7 0.25
33 5 0.18
34 16 0.57
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
Found at i:884053 original size:21 final size:21
Alignment explanation
Indices: 884029--884071 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
884019 CCCAAAATAG
*
884029 AGGGAATCGGTACCCCTTCAT
1 AGGGAATCGATACCCCTTCAT
884050 AGGGAATCGATACCCCTTCAT
1 AGGGAATCGATACCCCTTCAT
884071 A
1 A
884072 ATATTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (21 bp):
AGGGAATCGATACCCCTTCAT
Found at i:884133 original size:21 final size:21
Alignment explanation
Indices: 884107--884149 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
884097 CTGTTGAACA
884107 GGGGGGAATCGGTACCCCCTG
1 GGGGGGAATCGGTACCCCCTG
884128 GGGGGGAATCGGTACCCCCTG
1 GGGGGGAATCGGTACCCCCTG
884149 G
1 G
884150 ACATTCTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.44, T:0.14
Consensus pattern (21 bp):
GGGGGGAATCGGTACCCCCTG
Found at i:884208 original size:20 final size:19
Alignment explanation
Indices: 884183--884259 Score: 88
Period size: 20 Copynumber: 4.1 Consensus size: 19
884173 AAAACCTGCA
884183 GGGGGTATCTGTACCCCCTG
1 GGGGGTATCTGTA-CCCCTG
*
884203 GGGGGTATTTGTACCCC--
1 GGGGGTATCTGTACCCCTG
884220 -GGGGTATCTGTACCCCCTG
1 GGGGGTATCTGTA-CCCCTG
* *
884239 GGGGGAATCTATACCCCTG
1 GGGGGTATCTGTACCCCTG
884258 GG
1 GG
884260 CAATCTTGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
16 11 0.22
17 4 0.08
19 12 0.24
20 22 0.45
ACGTcount: A:0.13, C:0.27, G:0.35, T:0.25
Consensus pattern (19 bp):
GGGGGTATCTGTACCCCTG
Found at i:884225 original size:16 final size:16
Alignment explanation
Indices: 884184--884235 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 16
884174 AAACCTGCAG
884184 GGGGTATCTGTACCCCC
1 GGGGTATCTGTA-CCCC
*
884201 TGGGGGGTATTTGTACCCC
1 ---GGGGTATCTGTACCCC
884220 GGGGTATCTGTACCCC
1 GGGGTATCTGTACCCC
884236 CTGGGGGGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 15 0.50
19 4 0.13
20 11 0.37
ACGTcount: A:0.12, C:0.29, G:0.33, T:0.27
Consensus pattern (16 bp):
GGGGTATCTGTACCCC
Found at i:884254 original size:36 final size:36
Alignment explanation
Indices: 884184--884255 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
884174 AAACCTGCAG
* * *
884184 GGGGTATCTGTACCCCCTGGGGGGTATTTGTACCCC
1 GGGGTATCTGTACCCCCTGGGGGGAATCTATACCCC
884220 GGGGTATCTGTACCCCCTGGGGGGAATCTATACCCC
1 GGGGTATCTGTACCCCCTGGGGGGAATCTATACCCC
884256 TGGGCAATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.14, C:0.29, G:0.32, T:0.25
Consensus pattern (36 bp):
GGGGTATCTGTACCCCCTGGGGGGAATCTATACCCC
Found at i:884381 original size:29 final size:31
Alignment explanation
Indices: 884349--884408 Score: 106
Period size: 29 Copynumber: 2.0 Consensus size: 31
884339 AAACTTTGAA
884349 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
884378 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
884409 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:889458 original size:21 final size:20
Alignment explanation
Indices: 889434--889474 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
889424 TTGAGTTTGC
889434 TTTTTCGATAA-TTGAATTTT
1 TTTTTCGATAATTTG-ATTTT
*
889454 TTTTTGGATAATTTGATTTT
1 TTTTTCGATAATTTGATTTT
889474 T
1 T
889475 ATTACCCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.22, C:0.02, G:0.12, T:0.63
Consensus pattern (20 bp):
TTTTTCGATAATTTGATTTT
Found at i:893037 original size:31 final size:30
Alignment explanation
Indices: 893002--893089 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 30
892992 CGTCAATAAA
893002 ATTAAAAAATTATAAAATACTTATTAAATTT
1 ATTAAAAAATTATAAAATA-TTATTAAATTT
* *
893033 ATTAAAAGATTATAAAATTATTAATAAATTT
1 ATTAAAAAATTATAAAA-TATTATTAAATTT
* *
893064 ATCT-AAATACTATAAAATAATTATTA
1 AT-TAAAAAATTATAAAAT-ATTATTA
893090 TATTATCGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
30 1 0.02
31 45 0.92
32 3 0.06
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
ATTAAAAAATTATAAAATATTATTAAATTT
Found at i:896893 original size:10 final size:10
Alignment explanation
Indices: 896880--896913 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
896870 CAAAACTTAC
*
896880 AAAAAAAAAA
1 AAAAAAAAAG
896890 AAAAAAAAAG
1 AAAAAAAAAG
*
896900 AAAAGAAAAG
1 AAAAAAAAAG
896910 AAAA
1 AAAA
896914 CATGACATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:897444 original size:3 final size:3
Alignment explanation
Indices: 897436--897460 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
897426 TGTGTTGCGA
897436 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
897461 ACCTGTAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:900063 original size:51 final size:53
Alignment explanation
Indices: 899968--900072 Score: 169
Period size: 51 Copynumber: 2.0 Consensus size: 53
899958 ATTCTCATAG
* *
899968 TTCTGTTTTGGTCACACAATTATTTTTTTCGGAAATATACTTAATGTTTTGTT
1 TTCTGTTTTGGTCACACAATTATTTTTTTCGGAAACATACTTAATGTTTCGTT
*
900021 TTCTGTTTTGGTCAC-CAATTA-TTTTTTCGGAAACGTACTTAATGTTTCGTT
1 TTCTGTTTTGGTCACACAATTATTTTTTTCGGAAACATACTTAATGTTTCGTT
900072 T
1 T
900073 GTGTTATATT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
51 28 0.57
52 6 0.12
53 15 0.31
ACGTcount: A:0.21, C:0.13, G:0.14, T:0.51
Consensus pattern (53 bp):
TTCTGTTTTGGTCACACAATTATTTTTTTCGGAAACATACTTAATGTTTCGTT
Found at i:900709 original size:42 final size:43
Alignment explanation
Indices: 900658--900749 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
900648 TGTATGAATG
* *
900658 AAAATATTAGAGACCTCAAATAT-AAGGTAAAAAGTGAGATT-A
1 AAAAAATTAGAGACCTCAAATATAAAGGTAAAAA-TGAAATTGA
* * *
900700 AAAAAATTAGGGCCCTCAATTATAAAGGTAAAAATGAAATTGA
1 AAAAAATTAGAGACCTCAAATATAAAGGTAAAAATGAAATTGA
900743 AAAAAAT
1 AAAAAAT
900750 CAGGAGTTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (43 bp):
AAAAAATTAGAGACCTCAAATATAAAGGTAAAAATGAAATTGA
Found at i:900746 original size:43 final size:43
Alignment explanation
Indices: 900671--900770 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
900661 ATATTAGAGA
* * *
900671 CCTCAAATAT-AAGGTAAAAAGTGAGATTAAAAAAATTAGG-G
1 CCTCAATTATAAAGGTAAAAAGTGAAATTAAAAAAATCAGGAG
900712 CCCTCAATTATAAAGGTAAAAA-TGAAATTGAAAAAAATCAGGAG
1 -CCTCAATTATAAAGGTAAAAAGTGAAATT-AAAAAAATCAGGAG
*
900756 -TTCAATTATAAAGGT
1 CCTCAATTATAAAGGT
900771 GCAAAGTGGG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
42 29 0.57
43 21 0.41
44 1 0.02
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.24
Consensus pattern (43 bp):
CCTCAATTATAAAGGTAAAAAGTGAAATTAAAAAAATCAGGAG
Found at i:900853 original size:45 final size:43
Alignment explanation
Indices: 900800--900922 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
900790 CTTAAAATTA
* *
900800 TCAATTATAAATGTTAAAAAATAGGATTGAAAAAAAATAAGGGTC
1 TCAATTATAAA-GATAAAAAATAGAATT-AAAAAAAATAAGGGTC
* * *
900845 TCAATTATAAAGATAAAAAGTAGAATTATAAAAAATAA-GGAC
1 TCAATTATAAAGATAAAAAATAGAATTAAAAAAAATAAGGGTC
* * *
900887 ATAAATTATAAATATAAAAAACTAAAATTAAAAAAA
1 -TCAATTATAAAGATAAAAAA-TAGAATTAAAAAAA
900923 TTAGAGACTC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 3 0.05
43 27 0.41
44 25 0.38
45 11 0.17
ACGTcount: A:0.61, C:0.04, G:0.10, T:0.25
Consensus pattern (43 bp):
TCAATTATAAAGATAAAAAATAGAATTAAAAAAAATAAGGGTC
Found at i:901087 original size:39 final size:39
Alignment explanation
Indices: 901044--901122 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
901034 TCAACATTGT
901044 TGTTGATTTTTTAATGATGGTTATCTAATAAAATTAAAA
1 TGTTGATTTTTTAATGATGGTTATCTAATAAAATTAAAA
901083 TGTTGATTTTTTAATGATGGTTATCTAATAAAATTAAAA
1 TGTTGATTTTTTAATGATGGTTATCTAATAAAATTAAAA
901122 T
1 T
901123 AAAACGTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.47
Consensus pattern (39 bp):
TGTTGATTTTTTAATGATGGTTATCTAATAAAATTAAAA
Found at i:905507 original size:2 final size:2
Alignment explanation
Indices: 905500--905531 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
905490 TAATTTAAAC
905500 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
905532 TATTAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:917539 original size:21 final size:21
Alignment explanation
Indices: 917488--917540 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
917478 ATTATGACTA
917488 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
917509 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
917530 TCGCAATGCGA
1 TCGCAATGCGA
917541 ATTTGGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:917554 original size:21 final size:21
Alignment explanation
Indices: 917530--917582 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
917520 TTTTCCCAAT
917530 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
*
917551 TCGCAATGCGAATTTGGAAAG
1 TCGCAATGCGAATTTGGAAAA
*
917572 TCGCAACGCGA
1 TCGCAATGCGA
917583 TACTGACTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:917597 original size:20 final size:20
Alignment explanation
Indices: 917572--917645 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
917562 ATTTGGAAAG
917572 TCGCAACGCGATACTGACTA
1 TCGCAACGCGATACTGACTA
* *
917592 TCGCAACGCGATAAT-ACAAAA
1 TCGCAACGCGATACTGAC--TA
*
917613 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTA
*
917633 TCGCAACGAGATA
1 TCGCAACGCGATA
917646 ATACATAATC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.04
20 26 0.58
21 15 0.33
22 2 0.04
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTA
Found at i:917617 original size:21 final size:20
Alignment explanation
Indices: 917572--917665 Score: 75
Period size: 20 Copynumber: 4.6 Consensus size: 20
917562 ATTTGGAAAG
* *
917572 TCGCAACGCGATACTGAC-TA
1 TCGCAACGCGATAAT-ACAAA
917592 TCGCAACGCGATAATACAAAA
1 TCGCAACGCGATAATAC-AAA
* **
917613 TCGCAACGCGATACTGAC-TT
1 TCGCAACGCGATAAT-ACAAA
*
917633 TCGCAACGAGATAATACATAA
1 TCGCAACGCGATAATACA-AA
*
917654 TCGCAATGCGAT
1 TCGCAACGCGAT
917666 TTTCAAAGCG
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
19 4 0.07
20 27 0.47
21 25 0.43
22 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
TCGCAACGCGATAATACAAA
Found at i:917617 original size:41 final size:41
Alignment explanation
Indices: 917572--917665 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 41
917562 ATTTGGAAAG
*
917572 TCGCAACGCGATACTGACTATCGCAACGCGATAATACAAAA
1 TCGCAACGCGATACTGACTATCGCAACGAGATAATACAAAA
* *
917613 TCGCAACGCGATACTGACTTTCGCAACGAGATAATACATAA
1 TCGCAACGCGATACTGACTATCGCAACGAGATAATACAAAA
*
917654 TCGCAATGCGAT
1 TCGCAACGCGAT
917666 TTTCAAAGCG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (41 bp):
TCGCAACGCGATACTGACTATCGCAACGAGATAATACAAAA
Found at i:917852 original size:22 final size:22
Alignment explanation
Indices: 917824--917867 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
917814 CTATCTCTCA
917824 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
917846 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
917868 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:918151 original size:20 final size:20
Alignment explanation
Indices: 918118--918167 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
918108 TCGCAACTCT
* *
918118 CGTTGTGATAGTCAAATTCG
1 CGTTGCGATTGTCAAATTCG
**
918138 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCAAATTCG
*
918158 TGTTGCGATT
1 CGTTGCGATT
918168 TTCATTTTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.26, T:0.42
Consensus pattern (20 bp):
CGTTGCGATTGTCAAATTCG
Found at i:918172 original size:20 final size:20
Alignment explanation
Indices: 918134--918176 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
918124 GATAGTCAAA
918134 TTCGCGTTGCGATTGTCATT
1 TTCGCGTTGCGATTGTCATT
* *
918154 TTCGTGTTGCGATTTTCATT
1 TTCGCGTTGCGATTGTCATT
918174 TTC
1 TTC
918177 AGAAACTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.21, T:0.51
Consensus pattern (20 bp):
TTCGCGTTGCGATTGTCATT
Found at i:920082 original size:20 final size:20
Alignment explanation
Indices: 920057--920126 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
920047 TAGTTTACTT
920057 TCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTA
** * *
920077 TCGCAATGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTA
** **
920097 TCGCAATGCG-AAATGAAAA
1 TCGCAACACGAAAATGACTA
920116 TCGCAACACGA
1 TCGCAACACGA
920127 TAGCCATTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 14 0.35
20 26 0.65
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (20 bp):
TCGCAACACGAAAATGACTA
Found at i:920111 original size:19 final size:20
Alignment explanation
Indices: 920068--920112 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
920058 CGCAACACGA
920068 AAATGACTATCGCAATGCGG
1 AAATGACTATCGCAATGCGG
*
920088 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAATGCGG
920107 AAATGA
1 AAATGA
920113 AAATCGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (20 bp):
AAATGACTATCGCAATGCGG
Found at i:920118 original size:19 final size:20
Alignment explanation
Indices: 920076--920121 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
920066 GAAAATGACT
***
920076 ATCGCAATGCGGAAATGGCT
1 ATCGCAATGCGGAAATGAAA
920096 ATCGCAATGC-GAAATGAAA
1 ATCGCAATGCGGAAATGAAA
920115 ATCGCAA
1 ATCGCAA
920122 CACGATAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (20 bp):
ATCGCAATGCGGAAATGAAA
Found at i:920149 original size:20 final size:20
Alignment explanation
Indices: 920124--920186 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
920114 AATCGCAACA
920124 CGATAGCCATTTCCGCGTTG
1 CGATAGCCATTTCCGCGTTG
920144 CGATAGCCATTTCCGCGTTG
1 CGATAGCCATTTCCGCGTTG
* *
920164 CGATAGTCATTTTCGCGTTG
1 CGATAGCCATTTCCGCGTTG
920184 CGA
1 CGA
920187 AAGTAAGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.16, C:0.27, G:0.25, T:0.32
Consensus pattern (20 bp):
CGATAGCCATTTCCGCGTTG
Found at i:920197 original size:20 final size:20
Alignment explanation
Indices: 920157--920232 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
920147 TAGCCATTTC
* * *
920157 CGCGTTGCGATAGTCATTTT
1 CGCGTTGCGAAAGTAAGTTT
920177 CGCGTTGCGAAAGTAAGTTT
1 CGCGTTGCGAAAGTAAGTTT
*
920197 CGTGTTGCGAAAGTAAGTTT
1 CGCGTTGCGAAAGTAAGTTT
*
920217 CGTGTTGCGAAAGTAA
1 CGCGTTGCGAAAGTAA
920233 ACTATTCTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (20 bp):
CGCGTTGCGAAAGTAAGTTT
Found at i:920204 original size:40 final size:40
Alignment explanation
Indices: 920124--920232 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
920114 AATCGCAACA
* * * **
920124 CGATAGCCATTTCCGCGTTGCGATAGCCATTTCCGCGTTG
1 CGATAGTCATTTTCGCGTTGCGAAAGTAATTTCCGCGTTG
*
920164 CGATAGTCATTTTCGCGTTGCGAAAGTAAGTTT-CGTGTTG
1 CGATAGTCATTTTCGCGTTGCGAAAGTAA-TTTCCGCGTTG
* * * *
920204 CGAAAGTAAGTTTCGTGTTGCGAAAGTAA
1 CGATAGTCATTTTCGCGTTGCGAAAGTAA
920233 ACTATTCTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 55 0.95
41 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (40 bp):
CGATAGTCATTTTCGCGTTGCGAAAGTAATTTCCGCGTTG
Found at i:920625 original size:21 final size:21
Alignment explanation
Indices: 920601--920657 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 21
920591 CCAATCGTTT
920601 AAGAGGCCCCTATCATCCCTC
1 AAGAGGCCCCTATCATCCCTC
* * **
920622 AAGAGTCCCC--CCATCGTTC
1 AAGAGGCCCCTATCATCCCTC
*
920641 AAGAGGCCACTATCATC
1 AAGAGGCCCCTATCATC
920658 GTTGAAGAGG
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
19 14 0.52
21 13 0.48
ACGTcount: A:0.26, C:0.39, G:0.16, T:0.19
Consensus pattern (21 bp):
AAGAGGCCCCTATCATCCCTC
Found at i:920654 original size:40 final size:42
Alignment explanation
Indices: 920571--920657 Score: 142
Period size: 40 Copynumber: 2.1 Consensus size: 42
920561 AACTCACCTG
* *
920571 TCATCCCTCAAGAGTCCCCTCCAATCGTTTAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCACTA
920613 TCATCCCTCAAGAGTCCCC-CC-ATCGTTCAAGAGGCCACTA
1 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCACTA
920653 TCATC
1 TCATC
920658 GTTGAAGAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 22 0.51
41 2 0.05
42 19 0.44
ACGTcount: A:0.24, C:0.39, G:0.14, T:0.23
Consensus pattern (42 bp):
TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCACTA
Found at i:920659 original size:21 final size:20
Alignment explanation
Indices: 920594--920672 Score: 61
Period size: 21 Copynumber: 3.9 Consensus size: 20
920584 GTCCCCTCCA
*
920594 ATCGTTTAAGAGGCCCCTATC
1 ATCGTTCAAGAGG-CCCTATC
** * **
920615 ATCCCTCAAGAGTCCC-CCC
1 ATCGTTCAAGAGGCCCTATC
920634 ATCGTTCAAGAGGCCACTATC
1 ATCGTTCAAGAGGCC-CTATC
*
920655 ATCGTTGAAGAGGTCCCT
1 ATCGTTCAAGAGG-CCCT
920673 CCCACCATTC
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
19 13 0.30
20 4 0.09
21 24 0.56
22 2 0.05
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGTTCAAGAGGCCCTATC
Found at i:922096 original size:14 final size:14
Alignment explanation
Indices: 922062--922100 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
922052 TTGATTGTTT
922062 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
922076 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
922090 TGTTGATTTGT
1 AATTGATTTGT
922101 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:922268 original size:19 final size:19
Alignment explanation
Indices: 922216--922278 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
922206 CATCGCAACA
922216 CGAAACTGACTATCGCAATG
1 CGAAA-TGACTATCGCAATG
** *
922236 CGAAATGAAAATCGTAATG
1 CGAAATGACTATCGCAATG
*
922255 CGAAATGGCTATCGCAATG
1 CGAAATGACTATCGCAATG
*
922274 AGAAA
1 CGAAA
922279 ATCGTAATGC
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 30 0.86
20 5 0.14
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (19 bp):
CGAAATGACTATCGCAATG
Found at i:922334 original size:20 final size:20
Alignment explanation
Indices: 922309--922364 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
922299 TCGCATTGCG
*
922309 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
*
922329 ATTTTCGCGTTGCGATAGTC
1 ATTTTCGCGTTGCGATAGCC
922349 ATTTTCGCGTTGCGAT
1 ATTTTCGCGTTGCGAT
922365 TTCCCCGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.41
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:922612 original size:20 final size:20
Alignment explanation
Indices: 922589--922663 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
922579 TGCGATTTTT
*
922589 AGAATCTCGTTGCGAAAGTC
1 AGAATCGCGTTGCGAAAGTC
922609 AGAATCGCGTTGCGAAAGTC
1 AGAATCGCGTTGCGAAAGTC
*
922629 AGAATCGCATTGCGAAAGTC
1 AGAATCGCGTTGCGAAAGTC
*
922649 AGTATCGCGTTGCGA
1 AGAATCGCGTTGCGA
922664 TTTTGTATTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (20 bp):
AGAATCGCGTTGCGAAAGTC
Found at i:922705 original size:20 final size:20
Alignment explanation
Indices: 922596--922704 Score: 121
Period size: 20 Copynumber: 5.4 Consensus size: 20
922586 TTTAGAATCT
*
922596 CGTTGCGAAAGTCAGAATCG
1 CGTTGCGAAAGTCAGTATCG
*
922616 CGTTGCGAAAGTCAGAATCG
1 CGTTGCGAAAGTCAGTATCG
*
922636 CATTGCGAAAGTCAGTATCG
1 CGTTGCGAAAGTCAGTATCG
** *
922656 CGTTGCGATTTTGT-ATTATCG
1 CGTTGCGA--AAGTCAGTATCG
*
922677 CGTTGCGATAGTCAGTATCG
1 CGTTGCGAAAGTCAGTATCG
*
922697 CATTGCGA
1 CGTTGCGA
922705 TTTTCCAAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
19 3 0.04
20 58 0.75
21 14 0.18
22 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (20 bp):
CGTTGCGAAAGTCAGTATCG
Found at i:922724 original size:41 final size:41
Alignment explanation
Indices: 922632--922726 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
922622 GAAAGTCAGA
* * ** *
922632 ATCGCATTGCGAAAGTCAGTATCGCGTTGCGATTTTGTATT
1 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCAAAT
*
922673 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAAT
1 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT-CAAAT
922715 -TCGCATTGCGAT
1 ATCGCATTGCGAT
922727 TTACTTATTC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
41 44 0.96
42 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (41 bp):
ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCAAAT
Found at i:922738 original size:20 final size:21
Alignment explanation
Indices: 922694--922745 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
922684 ATAGTCAGTA
*
922694 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
922715 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
922735 TCGCATTGCGA
1 TCGCATTGCGA
922746 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:922784 original size:20 final size:20
Alignment explanation
Indices: 922756--922848 Score: 105
Period size: 20 Copynumber: 4.7 Consensus size: 20
922746 ATTGGGAAAA
*
922756 TCGCAACGCGATACTTACTT
1 TCGCAACGCGATACTAACTT
*
922776 TCACAACGCGATACTAACTT
1 TCGCAACGCGATACTAACTT
* *
922796 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTAACTT
* * * *
922816 TCGCAACGAGATTCTGACTA
1 TCGCAACGCGATACTAACTT
*
922836 TCGCAACGAGATA
1 TCGCAACGCGATA
922849 ATACAGAATC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATACTAACTT
Found at i:922801 original size:40 final size:40
Alignment explanation
Indices: 922755--922848 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
922745 AATTGGGAAA
* *
922755 ATCGCAACGCGATACTTACTTTCACAACGCGATACTAACT
1 ATCGCAACGCGATACTGACTTTCACAACGAGATACTAACT
* * * * *
922795 TTCGCAACGCGATTCTGACTTTCGCAACGAGATTCTGACT
1 ATCGCAACGCGATACTGACTTTCACAACGAGATACTAACT
*
922835 ATCGCAACGAGATA
1 ATCGCAACGCGATA
922849 ATACAGAATC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (40 bp):
ATCGCAACGCGATACTGACTTTCACAACGAGATACTAACT
Found at i:923021 original size:12 final size:12
Alignment explanation
Indices: 923002--923035 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
922992 CTCTCCGGCG
923002 ACATCCGTTCCT
1 ACATCCGTTCCT
*
923014 ATATCCGTTCCT
1 ACATCCGTTCCT
923026 ACATCC-TTCC
1 ACATCCGTTCC
923036 CCATCCGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:923835 original size:12 final size:12
Alignment explanation
Indices: 923818--923842 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
923808 ATATAATCCT
923818 GAAGAAGAAAAA
1 GAAGAAGAAAAA
923830 GAAGAAGAAAAA
1 GAAGAAGAAAAA
923842 G
1 G
923843 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:926193 original size:19 final size:19
Alignment explanation
Indices: 926171--926229 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
926161 GGAAATTACT
926171 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
926190 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
926204 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
926223 ATCGCAA
1 ATCGCAA
926230 CGAGGGAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 10 0.30
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 17 0.52
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:926213 original size:33 final size:33
Alignment explanation
Indices: 926171--926264 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
926161 GGAAATTACT
926171 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
926204 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
926237 ATCGCAAAGTGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
926265 CGAATTTAGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:926299 original size:19 final size:19
Alignment explanation
Indices: 926264--926359 Score: 98
Period size: 19 Copynumber: 5.3 Consensus size: 19
926254 AAATCGCAAC
*
926264 GCGAATTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
926283 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
926302 GCGATTTT-G--T--CGTT
1 GCGATTTTAGTTTCGCGTT
*
926316 GTGATTTTCA-TTTCGCGTT
1 GCGATTTT-AGTTTCGCGTT
*
926335 GCAATTTTCA-TTTCGCGTT
1 GCGATTTT-AGTTTCGCGTT
926354 GCGATT
1 GCGATT
926360 CTCTCGTTGC
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
14 11 0.17
16 1 0.02
17 1 0.02
18 1 0.02
19 52 0.79
ACGTcount: A:0.12, C:0.17, G:0.24, T:0.47
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:926322 original size:33 final size:33
Alignment explanation
Indices: 926279--926342 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
926269 TTTAGTTTCG
*
926279 CGTTGCGATTTT-AGTTTCGCGTTGCGATTTTGT
1 CGTTGCGATTTTCA-TTTCGCGTTGCAATTTTGT
*
926312 CGTTGTGATTTTCATTTCGCGTTGCAATTTT
1 CGTTGCGATTTTCATTTCGCGTTGCAATTTT
926343 CATTTCGCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.50
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCGTTGCAATTTTGT
Found at i:926352 original size:52 final size:52
Alignment explanation
Indices: 926274--926388 Score: 169
Period size: 52 Copynumber: 2.2 Consensus size: 52
926264 GCGAATTTAG
* * * *
926274 TTTCGCGTTGCGATTTTAGTTTCGCGTTGCGATTTTGTCGTTGTGATTTTCA
1 TTTCGCGTTGCAATTTTAGTTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
926326 TTTCGCGTTGCAATTTTCA-TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCAATTTT-AGTTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
*
926378 TTTCGCATTGC
1 TTTCGCGTTGC
926389 GATAGTCATT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 56 0.98
53 1 0.02
ACGTcount: A:0.10, C:0.20, G:0.22, T:0.48
Consensus pattern (52 bp):
TTTCGCGTTGCAATTTTAGTTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
Found at i:926390 original size:19 final size:19
Alignment explanation
Indices: 926274--926391 Score: 105
Period size: 19 Copynumber: 6.7 Consensus size: 19
926264 GCGAATTTAG
926274 TTTCGCGTTGCGATTTT-A
1 TTTCGCGTTGCGATTTTCA
926292 GTTTCGCGTTGCGA-TTT--
1 -TTTCGCGTTGCGATTTTCA
* *
926309 TGT--CGTTGTGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
926326 TTTCGCGTTGCAATTTTCA
1 TTTCGCGTTGCGATTTTCA
926345 TTTCGCGTTGCGA--TTC-
1 TTTCGCGTTGCGATTTTCA
*
926361 --TCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
926378 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
926392 AGTCATTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 20
0.73 0.08 0.18
Matches are distributed among these distances:
14 17 0.21
15 3 0.04
16 5 0.06
17 5 0.06
18 3 0.04
19 47 0.59
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.47
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:926398 original size:52 final size:52
Alignment explanation
Indices: 926293--926399 Score: 151
Period size: 52 Copynumber: 2.1 Consensus size: 52
926283 GCGATTTTAG
* * * * **
926293 TTTCGCGTTGCGATTTTGTCGTTGTGATTTTCATTTCGCGTTGCAATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCAATAGTCA
*
926345 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCAATAGTCA
926397 TTT
1 TTT
926400 TTGCCTTCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.48
Consensus pattern (52 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCAATAGTCA
Found at i:926517 original size:14 final size:14
Alignment explanation
Indices: 926498--926534 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
926488 CATCAATTAA
926498 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
926512 ACAAATCACCTTTT
1 ACAAATCAACTTTT
926526 ACAAATCAA
1 ACAAATCAA
926535 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:928386 original size:91 final size:92
Alignment explanation
Indices: 928209--928393 Score: 304
Period size: 91 Copynumber: 2.0 Consensus size: 92
928199 ATTTCAAACT
928209 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACATAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACA-AGTTTAGC
928274 AGAATTGGCAGCAACCGAATAAATTTAC
65 AGAATTGGCAGCAACCGAATAAATTTAC
*
928302 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAA-AC-AGTTTAG
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAAGAATACAAGTTTAG
*
928364 CAGTATTGGCAGCAACCGAATAAATTTAC
64 CAGAATTGGCAGCAACCGAATAAATTTAC
928393 T
1 T
928394 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
91 36 0.41
93 21 0.24
94 4 0.05
95 27 0.31
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.22
Consensus pattern (92 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACAAGTTTAGCA
GAATTGGCAGCAACCGAATAAATTTAC
Found at i:930146 original size:52 final size:52
Alignment explanation
Indices: 930059--930184 Score: 189
Period size: 52 Copynumber: 2.4 Consensus size: 52
930049 TTTTTTTGTT
* **
930059 GAAATGAAAATCACAACGCGGAAATGACTATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC-GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
930112 GAAATGACTATCGCAACGCGAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
930164 GAAATGAAAATCGCAATGCGA
1 GAAATGAAAATCGCAACGCGA
930185 TTTTGGTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
52 49 0.75
53 16 0.25
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (52 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:930177 original size:19 final size:19
Alignment explanation
Indices: 930059--930184 Score: 101
Period size: 19 Copynumber: 7.1 Consensus size: 19
930049 TTTTTTTGTT
*
930059 GAAATGAAAATCACAACGC
1 GAAATGAAAATCGCAACGC
**
930078 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
930096 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
**
930112 GAAATGACTATCGCAACGC
1 GAAATGAAAATCGCAACGC
930131 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
930148 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
930164 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
930183 GA
1 GA
930185 TTTTGGTTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
14 19 0.23
15 2 0.02
16 4 0.05
17 3 0.04
18 3 0.04
19 40 0.48
20 13 0.15
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:930228 original size:33 final size:32
Alignment explanation
Indices: 930180--930272 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 32
930170 AAAATCGCAA
*
930180 TGCGATTTTGGTTTCGCGTTGCGATTATCTCGT
1 TGCGATTTT-ATTTCGCGTTGCGATTATCTCGT
*
930213 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTT-ATTTCGCGTTGCGATTATCTCGT
*
930246 TGCGATAGTTATTTCCGCGTTGCGATT
1 TGCGAT-TTTATTT-CGCGTTGCGATT
930273 TTCATTCTCG
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
33 40 0.74
34 14 0.26
ACGTcount: A:0.11, C:0.20, G:0.25, T:0.44
Consensus pattern (32 bp):
TGCGATTTTATTTCGCGTTGCGATTATCTCGT
Found at i:930234 original size:19 final size:19
Alignment explanation
Indices: 930210--930278 Score: 60
Period size: 20 Copynumber: 3.8 Consensus size: 19
930200 GCGATTATCT
930210 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
930229 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
*
930243 CGTTGCGATAGTT-ATTTCCG
1 CGTTGCGAT-TTTCATTT-CG
930263 CGTTGCGATTTTCATT
1 CGTTGCGATTTTCATT
930279 CTCGAAACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 15
0.68 0.05 0.26
Matches are distributed among these distances:
14 10 0.26
17 5 0.13
19 11 0.28
20 13 0.33
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:930877 original size:21 final size:21
Alignment explanation
Indices: 930853--930908 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
930843 TATTCGCATT
*
930853 GCGAATTATGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
* *
930874 GCGAA-TACGTAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
*
930894 GCGAATTAGGAAAAT
1 GCGAATTACGAAAAT
930909 TGCATTGCGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:930917 original size:21 final size:21
Alignment explanation
Indices: 930846--930918 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
930836 ATTTACGTAT
* *
930846 TCGCATTGCGAATTATGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
930867 TCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGAAAA
*
930887 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
930908 TTGCATTGCGA
1 TCGCAATGCGA
930919 TAGTCAGTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.40
21 25 0.60
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTACGAAAA
Found at i:930972 original size:20 final size:21
Alignment explanation
Indices: 930928--930979 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
930918 ATAGTCAGTA
*
930928 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
930949 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
930969 TCGCATTGCGA
1 TCGCATTGCGA
930980 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:930994 original size:41 final size:40
Alignment explanation
Indices: 930830--930994 Score: 125
Period size: 41 Copynumber: 4.0 Consensus size: 40
930820 TAAGATTCGA
* *
930830 ATTGCGATTTACGTATTCGCATTGCGAATTATGAAAATCGC
1 ATTGCGA-TTACTTATTCGCATTGCGAATTAGGAAAATCGC
** * * * * *
930871 AACGCGAATACGTAAATCGCAATGCGAATTAGGAAAATTGC
1 ATTGCGATTAC-TTATTCGCATTGCGAATTAGGAAAATCGC
* * * *** *
930912 ATTGCGA-TAGTCAGTATCGCATTGCGATTTTCCAAATTCGC
1 ATTGCGATTACTTA-T-TCGCATTGCGAATTAGGAAAATCGC
*
930953 ATTGCGATTTACTTATTCGCATTGCGAATTGGGAAAATCGC
1 ATTGCGA-TTACTTATTCGCATTGCGAATTAGGAAAATCGC
930994 A
1 A
930995 ACGCGAAATT
Statistics
Matches: 91, Mismatches: 28, Indels: 10
0.71 0.22 0.08
Matches are distributed among these distances:
39 2 0.02
40 5 0.05
41 79 0.87
42 1 0.01
43 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (40 bp):
ATTGCGATTACTTATTCGCATTGCGAATTAGGAAAATCGC
Found at i:931021 original size:21 final size:22
Alignment explanation
Indices: 930969--931021 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
930959 ATTTACTTAT
930969 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
930990 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
931011 TCGCATTGCGA
1 TCGCATTGCGA
931022 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:933299 original size:22 final size:22
Alignment explanation
Indices: 933274--933392 Score: 71
Period size: 22 Copynumber: 5.4 Consensus size: 22
933264 CCATCATATA
933274 ACTAAAGTGCATTAACACT-AGG
1 ACTAAAGTGCATTAACACTGA-G
* * *
933296 ACTAAAGTGCCTTAGCACTGAT
1 ACTAAAGTGCATTAACACTGAG
* * * *
933318 ACAAAAGTGCATTAGCATTGAT
1 ACTAAAGTGCATTAACACTGAG
* * *
933340 ACTAAAGTATC-TTAGCACTGAT
1 ACTAAAGT-GCATTAACACTGAG
* * * *
933362 ACAAAAGTACATTAGCACTGAT
1 ACTAAAGTGCATTAACACTGAG
*
933384 ACAAAAGTG
1 ACTAAAGTG
933393 TCTTAGTACT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
21 1 0.01
22 79 0.96
23 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (22 bp):
ACTAAAGTGCATTAACACTGAG
Found at i:933344 original size:44 final size:44
Alignment explanation
Indices: 933296--933403 Score: 162
Period size: 44 Copynumber: 2.5 Consensus size: 44
933286 TAACACTAGG
* * *
933296 ACTAAAGTGCCTTAGCACTGATACAAAAGTGCATTAGCATTGAT
1 ACTAAAGTGTCTTAGCACTGATACAAAAGTACATTAGCACTGAT
*
933340 ACTAAAGTATCTTAGCACTGATACAAAAGTACATTAGCACTGAT
1 ACTAAAGTGTCTTAGCACTGATACAAAAGTACATTAGCACTGAT
* *
933384 ACAAAAGTGTCTTAGTACTG
1 ACTAAAGTGTCTTAGCACTG
933404 GAGAAAATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (44 bp):
ACTAAAGTGTCTTAGCACTGATACAAAAGTACATTAGCACTGAT
Found at i:933398 original size:22 final size:22
Alignment explanation
Indices: 933299--933403 Score: 124
Period size: 22 Copynumber: 4.8 Consensus size: 22
933289 CACTAGGACT
*
933299 AAAGTGCCTTAGCACTGATACA
1 AAAGTGTCTTAGCACTGATACA
* *
933321 AAAGTG-CATTAGCATTGATACT
1 AAAGTGTC-TTAGCACTGATACA
*
933343 AAAGTATCTTAGCACTGATACA
1 AAAGTGTCTTAGCACTGATACA
*
933365 AAAGT-ACATTAGCACTGATACA
1 AAAGTGTC-TTAGCACTGATACA
*
933387 AAAGTGTCTTAGTACTG
1 AAAGTGTCTTAGCACTG
933404 GAGAAAATAT
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.03
22 67 0.94
23 2 0.03
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (22 bp):
AAAGTGTCTTAGCACTGATACA
Found at i:933760 original size:7 final size:7
Alignment explanation
Indices: 933745--933837 Score: 66
Period size: 7 Copynumber: 13.1 Consensus size: 7
933735 AGTATAGTTT
933745 TATTATA
1 TATTATA
*
933752 TATTCTA
1 TATTATA
* *
933759 TAGTATT
1 TATTATA
**
933766 TGGTATA
1 TATTATA
*
933773 TTTTATA
1 TATTATA
933780 T-TTATA
1 TATTATA
933786 TATTATA
1 TATTATA
933793 -A-TATA
1 TATTATA
*
933798 TATTTACA
1 TA-TTATA
933806 TATTATA
1 TATTATA
933813 TATATATA
1 TAT-TATA
933821 TATAATATA
1 TAT--TATA
933830 TATTATA
1 TATTATA
933837 T
1 T
933838 TTGAAAAACA
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
5 4 0.06
6 8 0.11
7 38 0.54
8 12 0.17
9 8 0.11
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (7 bp):
TATTATA
Found at i:933798 original size:2 final size:2
Alignment explanation
Indices: 933776--933837 Score: 62
Period size: 2 Copynumber: 33.5 Consensus size: 2
933766 TGGTATATTT
* * *
933776 TA TA TT TA TA TA T- TA TA -A TA TA TA TT TA CA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
933815 TA TA TA TA TA -A TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
933838 TTGAAAAACA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
1 5 0.10
2 44 0.90
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:933799 original size:20 final size:21
Alignment explanation
Indices: 933776--933837 Score: 81
Period size: 20 Copynumber: 2.9 Consensus size: 21
933766 TGGTATATTT
933776 TATATTTATATATTATA-ATA
1 TATATTTATATATTATATATA
*
933796 TATATTTACATATTATATATA
1 TATATTTATATATTATATATA
933817 TATATATAATATATATTATAT
1 TATAT-T--TATATATTATAT
933838 TTGAAAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.44
21 8 0.22
22 1 0.03
24 11 0.31
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TATATTTATATATTATATATA
Found at i:933815 original size:17 final size:17
Alignment explanation
Indices: 933776--933836 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 17
933766 TGGTATATTT
* *
933776 TATATTTATATATTATAA
1 TATATATATATA-CATAA
*
933794 TATATAT-T-TACATAT
1 TATATATATATACATAA
*
933809 TATATATATATATATAA
1 TATATATATATACATAA
933826 TATATAT-TATA
1 TATATATATATA
933837 TTTGAAAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
15 10 0.28
16 7 0.19
17 13 0.36
18 6 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATATATATACATAA
Found at i:933850 original size:27 final size:26
Alignment explanation
Indices: 933825--933883 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
933815 TATATATATA
933825 ATATA-TAT-TATATTTGAAAAACAT
1 ATATAGTATATATATTTGAAAAACAT
* *
933849 ATATAGTATATATATTTTAAAATACGT
1 ATATAGTATATATATTTGAAAA-ACAT
933876 -TATAGTAT
1 ATATAGTAT
933884 TTAAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 5 0.17
25 3 0.10
26 19 0.63
27 3 0.10
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (26 bp):
ATATAGTATATATATTTGAAAAACAT
Found at i:933870 original size:26 final size:30
Alignment explanation
Indices: 933818--933883 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 30
933808 TTATATATAT
*
933818 ATATATAATATATATTATATTTGAAAA-AC
1 ATATATAGTATATATTATATTTGAAAATAC
933847 ATATATAGTATATA-TAT-TTT-AAAATAC
1 ATATATAGTATATATTATATTTGAAAATAC
*
933874 GT-TATAGTAT
1 ATATATAGTAT
933884 TTAAAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 12 0.35
27 6 0.18
28 3 0.09
29 13 0.38
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (30 bp):
ATATATAGTATATATTATATTTGAAAATAC
Found at i:933910 original size:3 final size:3
Alignment explanation
Indices: 933895--933930 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
933885 TAAAAATATA
933895 TAT TAT ATAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
933931 GTGTCCAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:934038 original size:22 final size:22
Alignment explanation
Indices: 934010--934058 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
934000 ACCCAATGAG
*
934010 CAAGTTGTCAAGCTAAATTGTC
1 CAAGTTGTCAAGCCAAATTGTC
934032 CAAGTTGTCAAGCCAAATTGTC
1 CAAGTTGTCAAGCCAAATTGTC
934054 CAAGT
1 CAAGT
934059 GTAACAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (22 bp):
CAAGTTGTCAAGCCAAATTGTC
Found at i:939830 original size:15 final size:15
Alignment explanation
Indices: 939807--939839 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
939797 TGGTTGTATT
939807 GGGGAATGACGGTGA
1 GGGGAATGACGGTGA
*
939822 GGGGGATGACGGTGA
1 GGGGAATGACGGTGA
939837 GGG
1 GGG
939840 AAAACAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.61, T:0.12
Consensus pattern (15 bp):
GGGGAATGACGGTGA
Found at i:939946 original size:21 final size:21
Alignment explanation
Indices: 939922--939986 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
939912 AAGACAATCA
939922 AGAGTCGAAGACAAACTTGAG
1 AGAGTCGAAGACAAACTTGAG
*
939943 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGACAAACTTGAG
* *
939964 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGACAAACTTGAG
939985 AG
1 AG
939987 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.12, G:0.31, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGACAAACTTGAG
Found at i:940062 original size:33 final size:33
Alignment explanation
Indices: 940020--940085 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
940010 AAATAGATGG
*
940020 AGTGGTGAAAAAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAAAAGTAGAGGTGTTAAGGGGTGA
* *
940053 AGTGGTGAAAGAAGTTGAGGTGTTAAGGGGTGA
1 AGTGGTGAAAAAAGTAGAGGTGTTAAGGGGTGA
940086 TCTTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.45, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAAAAGTAGAGGTGTTAAGGGGTGA
Found at i:942645 original size:200 final size:201
Alignment explanation
Indices: 942162--942879 Score: 1131
Period size: 200 Copynumber: 3.7 Consensus size: 201
942152 GTAAAATTTA
* *
942162 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATATAACTGGTA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
942227 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGT
66 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGT
942292 CGATACTTTTGGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
131 CGATACTTTTGGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
942357 AAAGTG
196 AAAGTG
* * *
942363 TCAATCCTAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGATA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
942428 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGT
66 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGT
*
942493 CGATACTTTTGGTCCATAATGGATGCCAAAAA-GGTGAACGCATAAAGGGTCGATACATTTTCAA
131 CGATACTTTTGGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
942557 AAAGTG
196 AAAGTG
* * *
942563 TCGATCCCAGAAACATGTGCATCCATAAGTATAATATAATTGGTAAATTTACAATGTAACCGGTA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
* *
942628 TAAATATACCAGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGT
66 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGT
* *
942693 CGATACTTTTGGTCCATAATGGATACCAAAAAGGGTGAACGCATAAAGTGTCGATGC-----CAA
131 CGATACTTTTGGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
942753 AAA---
196 AAAGTG
* *
942756 T--AT--C-G--A-A-A--C--CCATAATTATAATGTAATAGGTAAATTTTCAATGTAACCGGTA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
942808 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACATTTTTT-ATTTTGTG
66 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACAC-TTTTTTAATTTTGTG
942872 TCGATACT
130 TCGATACT
942880 AATTTAAATA
Statistics
Matches: 491, Mismatches: 24, Indels: 25
0.91 0.04 0.05
Matches are distributed among these distances:
180 103 0.21
181 5 0.01
182 1 0.00
185 1 0.00
186 1 0.00
188 1 0.00
189 1 0.00
191 2 0.00
193 1 0.00
196 6 0.01
200 190 0.39
201 179 0.36
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (201 bp):
TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGT
CGATACTTTTGGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
AAAGTG
Found at i:943188 original size:15 final size:15
Alignment explanation
Indices: 943168--943196 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
943158 CCTTTCTCAA
943168 AGTTCTTCTCAACCC
1 AGTTCTTCTCAACCC
943183 AGTTCTTCTCAACC
1 AGTTCTTCTCAACC
943197 ACAACCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.38, G:0.07, T:0.34
Consensus pattern (15 bp):
AGTTCTTCTCAACCC
Found at i:945890 original size:51 final size:53
Alignment explanation
Indices: 945835--945944 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 53
945825 AGAATGGATG
*
945835 CCAAAAAGGG-GGAAC-CTACAAAGTGTCGATACATTT-TCATAGAGTGTCGA-T
1 CCAAAAAGGGTGGAACGC-ACAAAGTGTCGATACATTTATCA-AAAGTGTCGATT
* * * *
945886 CC-AAAAGGGTTGCACGCATAAAGTGTCGATACATTTATTAAAAGTGTCGATT
1 CCAAAAAGGGTGGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATT
945938 CCAAAAA
1 CCAAAAA
945945 CATCGAAACC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
50 7 0.14
51 32 0.65
52 6 0.12
53 4 0.08
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (53 bp):
CCAAAAAGGGTGGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATT
Found at i:949066 original size:73 final size:73
Alignment explanation
Indices: 948906--949054 Score: 173
Period size: 73 Copynumber: 2.1 Consensus size: 73
948896 ACATAATATA
* * * *
948906 TCGACACTTG-TGTAATTTGTGTCGATACTTATTGTCCAGGATGAATGCACAAACGAGGTGCACA
1 TCGACACTTGAT-AAATTTGTGTCGATACTTATTGTCCAGAATGAATCCACAAAAGAGGTGCACA
*
948970 TATAAAGTG
65 CATAAAGTG
*
948979 TCGACACTTGATAAATTTGTGTTGATACTT-TTAGTCCAGAATGAATACCA-AAAAG-GGTGCA-
1 TCGACACTTGATAAATTTGTGTCGATACTTATT-GTCCAGAATGAAT-CCACAAAAGAGGTGCAC
949040 ACCATAAAGTG
64 A-CATAAAGTG
949051 TCGA
1 TCGA
949055 TACATTTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
71 1 0.02
72 20 0.30
73 42 0.64
74 3 0.05
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (73 bp):
TCGACACTTGATAAATTTGTGTCGATACTTATTGTCCAGAATGAATCCACAAAAGAGGTGCACAC
ATAAAGTG
Found at i:949445 original size:87 final size:87
Alignment explanation
Indices: 949344--949506 Score: 292
Period size: 87 Copynumber: 1.9 Consensus size: 87
949334 AAATGGGTCA
949344 ATATAAGCGCTACCTATTACATTATATAAG-AGCTACCTAATATGTTATTGTACTTGATAATATT
1 ATATAAGCGCTACCTATTACATTATATAAGCA-CTACCTAATATGTTATTGTACTTGATAATATT
*
949408 TCCGGTTAAATGCCTATTACATT
65 TCCGATTAAATGCCTATTACATT
949431 ATATAAGCGCTACCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATATTT
*
949496 TCGATTAAATG
66 CCGATTAAATG
949507 ATATAACATT
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
87 72 0.99
88 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.39
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATATTT
CCGATTAAATGCCTATTACATT
Found at i:949450 original size:23 final size:23
Alignment explanation
Indices: 949420--949469 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
949410 CGGTTAAATG
*
949420 CCTATTACATTATATAAGCGCTA
1 CCTATTACATTATATAAGCACTA
949443 CCTATTACATTATATAAGCACTA
1 CCTATTACATTATATAAGCACTA
949466 CCTA
1 CCTA
949470 ATATGTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (23 bp):
CCTATTACATTATATAAGCACTA
Found at i:956049 original size:14 final size:14
Alignment explanation
Indices: 956032--956058 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
956022 TAAAATACGG
956032 TATGAACAATACCA
1 TATGAACAATACCA
956046 TATGAACAATACC
1 TATGAACAATACC
956059 CAAATGTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (14 bp):
TATGAACAATACCA
Found at i:956114 original size:2 final size:2
Alignment explanation
Indices: 956107--956131 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
956097 TACCATTTAC
956107 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
956132 CGTTTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:956734 original size:31 final size:31
Alignment explanation
Indices: 956683--956801 Score: 177
Period size: 31 Copynumber: 3.8 Consensus size: 31
956673 CCCGAAGGAC
* * *
956683 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
956714 CAGTTCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
956745 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
956776 CAGTCCATATGTCCTGAAGAACATAG
1 CAGTCCATATGTCCCGAAGAACATAG
956802 AAAAACCCTC
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 80 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:957419 original size:36 final size:37
Alignment explanation
Indices: 957372--957444 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
957362 TTCATTTAGG
957372 GGGGAATCGATACCCCCCC-AGGGGGAATCTGTTCCC
1 GGGGAATCGATACCCCCCCAAGGGGGAATCTGTTCCC
957408 GGGGAATCGATACCCCCCCAAGGGGGAATCTGTTCCC
1 GGGGAATCGATACCCCCCCAAGGGGGAATCTGTTCCC
957445 CCTGCACATA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 19 0.53
37 17 0.47
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.16
Consensus pattern (37 bp):
GGGGAATCGATACCCCCCCAAGGGGGAATCTGTTCCC
Found at i:961111 original size:31 final size:31
Alignment explanation
Indices: 961073--961197 Score: 180
Period size: 31 Copynumber: 4.0 Consensus size: 31
961063 CCCGAAGGAC
* * *
961073 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
961104 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
961135 CAGTCTATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
961166 CAGTCAATATGTCCCGAAGAACATAGATAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
961197 C
1 C
961198 CCTCGACCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Done.