Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008797.1 Hibiscus syriacus cultivar Beakdansim tig00111942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1112200
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 5
Found at i:158 original size:32 final size:33
Alignment explanation
Indices: 100--191 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
90 GAAAATGACT
* * * * *
100 ATCGCAACGTGAAAATGACTATCGCAACGAGAGA
1 ATCGCAACGCG-AAATGACAATCGCAACAACAAA
*
134 ATCGCAATGCGAAATGA-AATCGCAACAACAAA
1 ATCGCAACGCGAAATGACAATCGCAACAACAAA
*
166 ATCGCAACGCGAAATGACTATCGCAA
1 ATCGCAACGCGAAATGACAATCGCAA
192 TGCGAAAATG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
32 27 0.55
33 13 0.27
34 9 0.18
ACGTcount: A:0.43, C:0.23, G:0.20, T:0.14
Consensus pattern (33 bp):
ATCGCAACGCGAAATGACAATCGCAACAACAAA
Found at i:250 original size:20 final size:20
Alignment explanation
Indices: 79--237 Score: 143
Period size: 20 Copynumber: 8.7 Consensus size: 20
69 AATAGTTTAT
79 TATCGCAATGCGAAAATGAC
1 TATCGCAATGCGAAAATGAC
* *
99 TATCGCAACGTGAAAATGAC
1 TATCGCAATGCGAAAATGAC
*
119 TATCGCAA--CG-AGA-GA-
1 TATCGCAATGCGAAAATGAC
134 -ATCGCAATGCG-AAATGA-
1 TATCGCAATGCGAAAATGAC
*
151 AATCGCAA--C-AACAA--A-
1 TATCGCAATGCGAA-AATGAC
*
166 -ATCGCAACGCG-AAATGAC
1 TATCGCAATGCGAAAATGAC
184 TATCGCAATGCGAAAATGAC
1 TATCGCAATGCGAAAATGAC
*
204 TATCGTAATGCGAAAATGAC
1 TATCGCAATGCGAAAATGAC
224 TATCGCAATGCGAA
1 TATCGCAATGCGAA
238 TTTGATTATC
Statistics
Matches: 117, Mismatches: 8, Indels: 28
0.76 0.05 0.18
Matches are distributed among these distances:
14 14 0.12
15 3 0.03
16 10 0.09
17 7 0.06
18 8 0.07
19 10 0.09
20 65 0.56
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.18
Consensus pattern (20 bp):
TATCGCAATGCGAAAATGAC
Found at i:408 original size:20 final size:20
Alignment explanation
Indices: 295--422 Score: 166
Period size: 20 Copynumber: 6.3 Consensus size: 20
285 GATTCTCTCG
* **
295 TTGCGATAGTTAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
* **
315 CTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
335 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
* *
355 TTGCGATATTCATTTTCCGCG
1 TTGCGATAGTCATTTT-CGCA
376 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
396 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
416 TTGCGAT
1 TTGCGAT
423 TTTAAGTTTC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
20 79 0.81
21 18 0.19
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:967 original size:21 final size:21
Alignment explanation
Indices: 917--992 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
907 GGCCTCCCCT
*
917 ATCGTTCAAGAGGCCCCTATC
1 ATCGTTCAAGAGGCCCCTACC
** *
938 ATCCCTCAAGAGTCCCCT-CC
1 ATCGTTCAAGAGGCCCCTACC
* **
958 AATCGTTCAAGAGGCCACTGTC
1 -ATCGTTCAAGAGGCCCCTACC
*
980 ATCGTTGAAGAGG
1 ATCGTTCAAGAGG
993 TCCGTCCAAC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 1 0.02
21 41 0.95
22 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (21 bp):
ATCGTTCAAGAGGCCCCTACC
Found at i:2558 original size:33 final size:34
Alignment explanation
Indices: 2513--2588 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 34
2503 GGAAATGACT
*
2513 ATCGCAATGAGAGAATCACAATGCG-AAATGAAA
1 ATCGCAACGAGAGAATCACAATGCGAAAATGAAA
* *
2546 ATTGCAACGAGAGAATCGCAATGCGAAAATGAAA
1 ATCGCAACGAGAGAATCACAATGCGAAAATGAAA
2580 ATCGCAACG
1 ATCGCAACG
2589 CGAAACTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
33 22 0.58
34 16 0.42
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (34 bp):
ATCGCAACGAGAGAATCACAATGCGAAAATGAAA
Found at i:2660 original size:33 final size:34
Alignment explanation
Indices: 2603--2674 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
2593 ACTAAATTCG
*
2603 CGTTGCGATTTTCATTTTCGCATTGCGATTCACT
1 CGTTGCGATTTTCATTTTCGCATTGCAATTCACT
*
2637 CGTTGCGATTTTCA-TTTCGCATTGCAATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCAATTCACT
2670 CGTTG
1 CGTTG
2675 TGATAGTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 22 0.61
34 14 0.39
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCAATTCACT
Found at i:2685 original size:33 final size:33
Alignment explanation
Indices: 2603--2687 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
2593 ACTAAATTCG
** *
2603 CGTTGCGATTTTCATTTTCGCATTGCGATTCACT
1 CGTTGCGATAGTCA-TTTCGCATTGCAATTCACT
** *
2637 CGTTGCGATTTTCATTTCGCATTGCAATTCTCT
1 CGTTGCGATAGTCATTTCGCATTGCAATTCACT
*
2670 CGTTGTGATAGTCATTTC
1 CGTTGCGATAGTCATTTC
2688 CGCGTAGCGA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 32 0.70
34 14 0.30
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATAGTCATTTCGCATTGCAATTCACT
Found at i:2701 original size:20 final size:20
Alignment explanation
Indices: 2676--2727 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
2666 CTCTCGTTGT
2676 GATAGTCATTTCCGCGTAGC
1 GATAGTCATTTCCGCGTAGC
* *
2696 GATAGTCAATTCCGCGTTGC
1 GATAGTCATTTCCGCGTAGC
2716 -ATAGTC-TTTCCG
1 GATAGTCATTTCCG
2728 TGTTACAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 5 0.17
19 6 0.21
20 18 0.62
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (20 bp):
GATAGTCATTTCCGCGTAGC
Found at i:5205 original size:23 final size:24
Alignment explanation
Indices: 5163--5215 Score: 90
Period size: 23 Copynumber: 2.2 Consensus size: 24
5153 TCTAAAAATC
5163 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
*
5187 ATCAAAGTCCG-GTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
5210 ATCAAA
1 ATCAAA
5216 TTTTGAATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:6111 original size:20 final size:20
Alignment explanation
Indices: 6037--6143 Score: 121
Period size: 20 Copynumber: 5.4 Consensus size: 20
6027 TGAATTCAGT
* *
6037 ATTGCGATAGTCAGAATCTC
1 ATTGCGATAGTCAGATTCGC
* *
6057 GTTGCGATAGTCAAATCTCG-
1 ATTGCGATAGTCAGAT-TCGC
6077 -TTGCGATAGTCAGATTCGC
1 ATTGCGATAGTCAGATTCGC
6096 ATTGCGATAGTCAGATTCGC
1 ATTGCGATAGTCAGATTCGC
* *
6116 ATTGCGAT-TTACATATTCGC
1 ATTGCGATAGT-CAGATTCGC
6136 ATTGCGAT
1 ATTGCGAT
6144 TTACGTATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
18 3 0.04
19 15 0.20
20 56 0.74
21 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (20 bp):
ATTGCGATAGTCAGATTCGC
Found at i:6134 original size:40 final size:40
Alignment explanation
Indices: 6090--6239 Score: 151
Period size: 40 Copynumber: 3.7 Consensus size: 40
6080 CGATAGTCAG
*
6090 ATTCGCATTGCGATAGTCA-G-ATTCGCATTGCGATTTACAT
1 ATTCGCATTGCGAT--TCACGTATTCGCATTACGATTTACAT
* *
6130 ATTCGCATTGCGATTTACGTATTCGCATTACGATTTACGT
1 ATTCGCATTGCGATTCACGTATTCGCATTACGATTTACAT
* * * * * *
6170 ATTTGCATTGCGATTTACGTAATCGCATTGCGATTTTCCAA
1 ATTCGCATTGCGATTCACGTATTCGCATTACGA-TTTACAT
* * *
6211 ATTCGCGTTGCGATTTACGTATTCACATT
1 ATTCGCATTGCGATTCACGTATTCGCATT
6240 GCGAATTAGG
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
38 2 0.02
39 1 0.01
40 62 0.66
41 29 0.31
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (40 bp):
ATTCGCATTGCGATTCACGTATTCGCATTACGATTTACAT
Found at i:6144 original size:20 final size:20
Alignment explanation
Indices: 6110--6243 Score: 178
Period size: 20 Copynumber: 6.7 Consensus size: 20
6100 CGATAGTCAG
*
6110 ATTCGCATTGCGATTTACAT
1 ATTCGCATTGCGATTTACGT
6130 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
6150 ATTCGCATTACGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
6170 ATTTGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* * **
6190 AATCGCATTGCGATTTTCCAA
1 ATTCGCATTGCGA-TTTACGT
*
6211 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
6231 ATTCACATTGCGA
1 ATTCGCATTGCGA
6244 ATTAGGAAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
20 82 0.85
21 15 0.15
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:6292 original size:20 final size:21
Alignment explanation
Indices: 6240--6326 Score: 140
Period size: 21 Copynumber: 4.2 Consensus size: 21
6230 TATTCACATT
6240 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
*
6261 GTGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
6282 GCGAA-TAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* *
6302 GCGAATTTGGAAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
6323 GCGA
1 GCGA
6327 TAGTCAGAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 20 0.33
21 41 0.67
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.16
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:6298 original size:41 final size:42
Alignment explanation
Indices: 6240--6326 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 42
6230 TATTCACATT
*
6240 GCGAATTAGGAAAATCGCAACGTGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAACGCGAATTAGGAAAATCGCAAC
* *
6282 GCGAA-TAGGAAAATCGCAACGCGAATTTGGAAAATCGCAAT
1 GCGAATTAGGAAAATCGCAACGCGAATTAGGAAAATCGCAAC
6323 GCGA
1 GCGA
6327 TAGTCAGAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 37 0.88
42 5 0.12
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.16
Consensus pattern (42 bp):
GCGAATTAGGAAAATCGCAACGCGAATTAGGAAAATCGCAAC
Found at i:6338 original size:41 final size:41
Alignment explanation
Indices: 6240--6339 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 41
6230 TATTCACATT
* *
6240 GCGAATTAGGAAAATCGCAACGTGAATTAGGAAAATCGCAAC
1 GCGAA-TAGCAAAATCGCAACGCGAATTAGGAAAATCGCAAC
* * *
6282 GCGAATAGGAAAATCGCAACGCGAATTTGGAAAATCGCAAT
1 GCGAATAGCAAAATCGCAACGCGAATTAGGAAAATCGCAAC
*
6323 GCG-ATAGTCAGAATCGC
1 GCGAATAG-CAAAATCGC
6340 GTTGCGAATC
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
40 4 0.08
41 43 0.83
42 5 0.10
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
GCGAATAGCAAAATCGCAACGCGAATTAGGAAAATCGCAAC
Found at i:6755 original size:14 final size:14
Alignment explanation
Indices: 6706--6755 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
6696 AGAGATGAAC
6706 AAATAATTATTAAA
1 AAATAATTATTAAA
*
6720 TAATTAA--ATTAAA
1 -AAATAATTATTAAA
*
6733 ATATAATTATTAAA
1 AAATAATTATTAAA
*
6747 AAATCATTA
1 AAATAATTA
6756 CATAATTCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
12 4 0.14
13 6 0.21
14 13 0.46
15 5 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATAATTATTAAA
Found at i:9425 original size:43 final size:44
Alignment explanation
Indices: 9362--9463 Score: 170
Period size: 43 Copynumber: 2.3 Consensus size: 44
9352 AGAGAACCCT
9362 TAGAAACTTGGTAATTCTATTTCTATTTTTGTGCAAAT-ACATG
1 TAGAAACTTGGTAATTCTATTTCTATTTTTGTGCAAATAACATG
* *
9405 TTGAAACTCGGTAATTCTATTTCTATTTTTGTGCAAATAGACATG
1 TAGAAACTTGGTAATTCTATTTCTATTTTTGTGCAAATA-ACATG
9450 TAGAAACTTGGTAA
1 TAGAAACTTGGTAA
9464 CATATTCCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 36 0.68
45 17 0.32
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (44 bp):
TAGAAACTTGGTAATTCTATTTCTATTTTTGTGCAAATAACATG
Found at i:14499 original size:20 final size:20
Alignment explanation
Indices: 14474--14527 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
14464 AATTGGGAAA
14474 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
14494 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
14514 ATCGCAATGCGATA
1 ATCGCAATGCGATA
14528 ATACAAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:15147 original size:19 final size:19
Alignment explanation
Indices: 15087--15167 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
15077 TTCGAGAATG
15087 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
** *
15107 ACTATCGCAA--CGAGAT-
1 AAAATCGCAACGCGAAATA
15123 --AATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
15140 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
15159 AAAATCGCA
1 AAAATCGCA
15168 TTGCGATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
14 7 0.14
16 5 0.10
17 4 0.08
18 1 0.02
19 24 0.49
20 8 0.16
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:15185 original size:19 final size:19
Alignment explanation
Indices: 15163--15347 Score: 174
Period size: 19 Copynumber: 10.1 Consensus size: 19
15153 GAAACCAAAA
*
15163 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
15182 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
15201 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
15220 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
15240 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
**
15256 T-G-GTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
15273 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
15287 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
* *
15306 TCCGCGTTTCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
15326 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
15346 TC
1 TC
15348 AACCAAAAGA
Statistics
Matches: 138, Mismatches: 15, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
14 21 0.15
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 61 0.44
20 47 0.34
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:15240 original size:39 final size:38
Alignment explanation
Indices: 15163--15347 Score: 174
Period size: 33 Copynumber: 5.1 Consensus size: 38
15153 GAAACCAAAA
*
15163 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
*
15201 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GTTGCGATTTTCATT
* **
15240 TCGCGTTGCGATTGTC---T-G-GTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* **
15273 TCGCGTTGCGA--TTC---TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* * *
15306 TCCGCGTTTCGATTCTCATTATCTCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
15346 TC
1 TC
15348 AACCAAAAGA
Statistics
Matches: 125, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
31 3 0.02
33 40 0.32
34 9 0.07
35 1 0.01
36 3 0.02
38 21 0.17
39 30 0.24
40 18 0.14
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.45
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:15324 original size:20 final size:20
Alignment explanation
Indices: 15290--15347 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
15280 GCGATTCTCT
**
15290 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
* *
15310 CGTTTCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
15330 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
15348 AACCAAAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.17, T:0.45
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:18836 original size:14 final size:14
Alignment explanation
Indices: 18817--18852 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
18807 GATTGTTAAT
18817 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
18831 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
18845 TGATTTGT
1 TGATTTGT
18853 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:19016 original size:20 final size:19
Alignment explanation
Indices: 18959--19026 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 19
18949 AAAAAGTACT
18959 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
18978 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
18992 ATCGCAATGCGAAAATGAAA
1 ATCGCAATGCG-AAATGAAA
*
19012 ATCGCAACGCGAAAT
1 ATCGCAATGCGAAAT
19027 TAAATTCGCG
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
19 12 0.30
20 13 0.32
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:19062 original size:19 final size:19
Alignment explanation
Indices: 19031--19148 Score: 85
Period size: 19 Copynumber: 6.7 Consensus size: 19
19021 CGAAATTAAA
19031 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
19050 TTCGCGTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
19065 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
19083 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
19098 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
19116 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
19135 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
19149 GGACATTAAG
Statistics
Matches: 75, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
14 18 0.24
16 6 0.08
17 6 0.08
19 35 0.47
20 10 0.13
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:19077 original size:33 final size:33
Alignment explanation
Indices: 19035--19128 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
19025 ATTAAATTCG
*
19035 CGTTGCGATTTTCATTTCGCGTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
19068 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
19101 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
19129 AGTAATTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:19108 original size:14 final size:14
Alignment explanation
Indices: 19054--19110 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
19044 TTTCATTTCG
*
19054 CGTTGCGATTCCCT
1 CGTTGCGATTCTCT
*
19068 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TCT
19085 CGCATTGCGATTCTCT
1 CG--TTGCGATTCTCT
19101 CGTTGCGATT
1 CGTTGCGATT
19111 TTCATTTCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 16 0.46
16 7 0.20
17 6 0.17
19 6 0.17
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:21650 original size:24 final size:24
Alignment explanation
Indices: 21616--21669 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
21606 CTGAAACATC
* *
21616 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
21640 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
21664 ATCAAA
1 ATCAAA
21670 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:24318 original size:32 final size:33
Alignment explanation
Indices: 24260--24350 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
24250 GGAAATGGCT
24260 ATCGCAATGCGAAATGAAAATCGCAACAACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACAACAAA
*
24293 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACAACAAA
*
24325 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
24351 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACAACAAA
Found at i:24333 original size:14 final size:14
Alignment explanation
Indices: 24276--24333 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
24266 ATGCGAAATG
*
24276 AAAATCGCAACAAC
1 AAAATCGCAACGAC
*
24290 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
24306 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
24322 AAAATCGCAACG
1 AAAATCGCAACG
24334 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 21 0.57
16 7 0.19
18 9 0.24
ACGTcount: A:0.50, C:0.24, G:0.16, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:24344 original size:19 final size:19
Alignment explanation
Indices: 24202--24355 Score: 105
Period size: 19 Copynumber: 8.6 Consensus size: 19
24192 TAGTTTACTT
* *
24202 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
24222 TCGCAACGCGAAATGACTA
1 TCGCAACGCGAAATGAAAA
***
24241 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
24261 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
24280 TCGCAA--C--AA-CAAAA
1 TCGCAACGCGAAATGAAAA
*
24294 TCGCAATGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
24312 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
24326 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
24345 TCGCAATGCGA
1 TCGCAACGCGA
24356 TTTGTGTTTC
Statistics
Matches: 108, Mismatches: 14, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
14 20 0.19
15 2 0.02
16 5 0.05
17 1 0.01
18 12 0.11
19 39 0.36
20 29 0.27
ACGTcount: A:0.44, C:0.23, G:0.19, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:24386 original size:14 final size:14
Alignment explanation
Indices: 24367--24424 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
24357 TTGTGTTTCG
24367 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
24381 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
24397 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
*
24413 TGTTGCGATTTT
1 CGTTGCGATTTT
24425 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.09, C:0.16, G:0.26, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:24401 original size:32 final size:33
Alignment explanation
Indices: 24362--24440 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
24352 GCGATTTGTG
24362 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
24394 TTTCGCGTTGCGATTTTGTTGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
24427 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
24441 AGCCATTTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.10, C:0.18, G:0.24, T:0.48
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:24404 original size:18 final size:16
Alignment explanation
Indices: 24362--24410 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 16
24352 GCGATTTGTG
24362 TTTCGCGTTGCGATTT
1 TTTCGCGTTGCGATTT
*
24378 TGT--CGTTGCGATTT
1 TTTCGCGTTGCGATTT
24392 CATTTCGCGTTGCGATTT
1 --TTTCGCGTTGCGATTT
24410 T
1 T
24411 GTTGTTGCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 11 0.41
16 5 0.19
18 11 0.41
ACGTcount: A:0.08, C:0.18, G:0.24, T:0.49
Consensus pattern (16 bp):
TTTCGCGTTGCGATTT
Found at i:24439 original size:19 final size:18
Alignment explanation
Indices: 24383--24440 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 18
24373 GATTTTGTCG
24383 TTGCGA-TTTCATTTCGC
1 TTGCGATTTTCATTTCGC
*
24400 GTTGCGATTTT--GTT-G-
1 -TTGCGATTTTCATTTCGC
24415 TTGCGATTTTCATTTCGC
1 TTGCGATTTTCATTTCGC
24433 ATTGCGAT
1 -TTGCGAT
24441 AGCCATTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
14 10 0.31
16 3 0.09
17 3 0.09
18 6 0.19
19 10 0.31
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.48
Consensus pattern (18 bp):
TTGCGATTTTCATTTCGC
Found at i:24452 original size:20 final size:20
Alignment explanation
Indices: 24427--24471 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
24417 GCGATTTTCA
*
24427 TTTCGCATTGCGATAGCCAT
1 TTTCGCATTACGATAGCCAT
* *
24447 TTTCGCGTTACGATAGTCAT
1 TTTCGCATTACGATAGCCAT
24467 TTTCG
1 TTTCG
24472 TGTTGCGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (20 bp):
TTTCGCATTACGATAGCCAT
Found at i:24987 original size:18 final size:18
Alignment explanation
Indices: 24961--25000 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
24951 GTCGATCAGA
* *
24961 TGATGGCTCTGGGTGAGG
1 TGATAGCTCTGGGCGAGG
24979 TGATAGCTCTGGGCGAGG
1 TGATAGCTCTGGGCGAGG
24997 TGAT
1 TGAT
25001 GACTCCCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.12, G:0.45, T:0.28
Consensus pattern (18 bp):
TGATAGCTCTGGGCGAGG
Found at i:26379 original size:19 final size:20
Alignment explanation
Indices: 26332--26379 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
26322 TCTAAAAATG
*
26332 AAAATCGCAACACGAAAATT
1 AAAATCGCAACACGAAAACT
** *
26352 ACTATCGCAACGCG-AAACT
1 AAAATCGCAACACGAAAACT
26371 AAAATCGCA
1 AAAATCGCA
26380 TTGCGATTTG
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.48, C:0.25, G:0.12, T:0.15
Consensus pattern (20 bp):
AAAATCGCAACACGAAAACT
Found at i:26640 original size:22 final size:22
Alignment explanation
Indices: 26612--26655 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26602 GATGGAGATA
*
26612 GACGGATTTCG-CTGGAGATGGG
1 GACGGATATCGTC-GGAGATGGG
26634 GACGGATATCGTCGGAGATGGG
1 GACGGATATCGTCGGAGATGGG
26656 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.20, C:0.14, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATATCGTCGGAGATGGG
Found at i:26914 original size:21 final size:21
Alignment explanation
Indices: 26881--26981 Score: 59
Period size: 20 Copynumber: 4.9 Consensus size: 21
26871 TGCGAAAGTA
* * *
26881 AGTATCTCGTTGCGATTTTTT
1 AGTATCGCATTGCGATTTTTC
* **
26902 ATTATCGCATTGCGA-TAGTC
1 AGTATCGCATTGCGATTTTTC
*
26922 AGTATCGCATTGCGATTTTCCC
1 AGTATCGCATTGCGATTTT-TC
* *
26944 AAT-TCGCGTTGCGATTTACTT-
1 AGTATCGCATTGCGATTT--TTC
26965 A-T-TCGCATTGCGATTTT
1 AGTATCGCATTGCGATTTT
26982 CCCAATTCGC
Statistics
Matches: 62, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
18 1 0.02
20 30 0.48
21 27 0.44
22 3 0.05
23 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.43
Consensus pattern (21 bp):
AGTATCGCATTGCGATTTTTC
Found at i:26929 original size:20 final size:20
Alignment explanation
Indices: 26823--26937 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
26813 CGCTTTGAAA
*
26823 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
26844 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
** * *
26864 ATCGTGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
26884 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
26905 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
26925 ATCGCATTGCGAT
1 ATCGCATTGCGAT
26938 TTTCCCAATT
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
19 2 0.03
20 48 0.65
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:26956 original size:41 final size:41
Alignment explanation
Indices: 26926--27018 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
26916 ATAGTCAGTA
* *
26926 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
* *
26967 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
27008 TCGCATTGCGA
1 TCGCATTGCGA
27019 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:26991 original size:21 final size:20
Alignment explanation
Indices: 26926--27018 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
26916 ATAGTCAGTA
*
26926 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
26947 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
*
26967 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
26988 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
27008 TCGCATTGCGA
1 TCGCATTGCGA
27019 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACCAAT
Found at i:31918 original size:21 final size:21
Alignment explanation
Indices: 31892--31941 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
31882 GTGAATGACT
*
31892 TTGTTTGTAATATGGAAGCAA
1 TTGTTTGTAATACGGAAGCAA
*
31913 TTGTTTGTAATCCGGAAGCAA
1 TTGTTTGTAATACGGAAGCAA
31934 TTGTTTGT
1 TTGTTTGT
31942 GGTAATAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (21 bp):
TTGTTTGTAATACGGAAGCAA
Found at i:34673 original size:23 final size:23
Alignment explanation
Indices: 34630--34673 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
34620 ATTACATATA
* *
34630 TGTCTCGAAGGACCACGTAGAAT
1 TGTCCCGAAGGACCACATAGAAT
*
34653 TGTCCCGAAGGACCGCATAGA
1 TGTCCCGAAGGACCACATAGA
34674 CCCTCAACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (23 bp):
TGTCCCGAAGGACCACATAGAAT
Found at i:35322 original size:21 final size:21
Alignment explanation
Indices: 35297--35353 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
35287 ATTGCATCAG
*
35297 GGGTATCGATACCCTACTACA
1 GGGTACCGATACCCTACTACA
*
35318 GGGTACCGATACCCTACTATA
1 GGGTACCGATACCCTACTACA
35339 GGGTACCGATACCCT
1 GGGTACCGATACCCT
35354 TGCTACAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (21 bp):
GGGTACCGATACCCTACTACA
Found at i:42862 original size:29 final size:29
Alignment explanation
Indices: 42820--42879 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
42810 ATTCTACAGT
*
42820 GATCTCGTAGGACGCCATGCAATCCAGGC
1 GATCTCGTAGGACGCCATACAATCCAGGC
*
42849 GATCTTGTAGGACGCCATACAATCCAGGC
1 GATCTCGTAGGACGCCATACAATCCAGGC
42878 GA
1 GA
42880 CATACCATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.28, G:0.27, T:0.18
Consensus pattern (29 bp):
GATCTCGTAGGACGCCATACAATCCAGGC
Found at i:43000 original size:60 final size:63
Alignment explanation
Indices: 42929--43078 Score: 209
Period size: 64 Copynumber: 2.4 Consensus size: 63
42919 ACGAGCCACG
** * * *
42929 AGCCAATGGAGAGGTCGCCATGCAGTATTA-TA-CGA-GGAGAGGTCGCCATGCAGACGTGCC
1 AGCCAATGGAGAGGTCGCCATGCAGTACGACCACCAATGGAGAGGTCGCCATGCAGACGAGCC
42989 AGCCAATGGAGAGGTCGCCATGCAG-ACGAGCCAGCCAATGGAGAGGTCGCCATGCAGACGAGCC
1 AGCCAATGGAGAGGTCGCCATGCAGTACGA-CCA-CCAATGGAGAGGTCGCCATGCAGACGAGCC
43053 AGCCAATGGAGAGGTCGCCATGCAGT
1 AGCCAATGGAGAGGTCGCCATGCAGT
43079 CTGGGCGACC
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
59 2 0.03
60 25 0.32
61 1 0.01
63 2 0.03
64 49 0.62
ACGTcount: A:0.27, C:0.25, G:0.34, T:0.13
Consensus pattern (63 bp):
AGCCAATGGAGAGGTCGCCATGCAGTACGACCACCAATGGAGAGGTCGCCATGCAGACGAGCC
Found at i:43005 original size:32 final size:32
Alignment explanation
Indices: 42964--43077 Score: 219
Period size: 32 Copynumber: 3.6 Consensus size: 32
42954 TATTATACGA
*
42964 GGAGAGGTCGCCATGCAGACGTGCCAGCCAAT
1 GGAGAGGTCGCCATGCAGACGAGCCAGCCAAT
42996 GGAGAGGTCGCCATGCAGACGAGCCAGCCAAT
1 GGAGAGGTCGCCATGCAGACGAGCCAGCCAAT
43028 GGAGAGGTCGCCATGCAGACGAGCCAGCCAAT
1 GGAGAGGTCGCCATGCAGACGAGCCAGCCAAT
43060 GGAGAGGTCGCCATGCAG
1 GGAGAGGTCGCCATGCAG
43078 TCTGGGCGAC
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 81 1.00
ACGTcount: A:0.26, C:0.27, G:0.36, T:0.11
Consensus pattern (32 bp):
GGAGAGGTCGCCATGCAGACGAGCCAGCCAAT
Found at i:43108 original size:29 final size:29
Alignment explanation
Indices: 43064--43158 Score: 163
Period size: 29 Copynumber: 3.3 Consensus size: 29
43054 GCCAATGGAG
* **
43064 AGGTCGCCATGCAGTCTGGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
43093 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
43122 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
43151 AGGTCGCC
1 AGGTCGCC
43159 CCGGCGTCAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.14, C:0.31, G:0.33, T:0.23
Consensus pattern (29 bp):
AGGTCGCCATGTAGTCCCGGCGACCTTGT
Found at i:43433 original size:16 final size:17
Alignment explanation
Indices: 43412--43443 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
43402 GATTGCAGCC
43412 GAGAAAGAAA-GAAAGA
1 GAGAAAGAAAGGAAAGA
43428 GAGAAAGAAAGGAAAG
1 GAGAAAGAAAGGAAAG
43444 TAAGAAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAGAAAGAAAGGAAAGA
Found at i:43489 original size:16 final size:18
Alignment explanation
Indices: 43468--43506 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
43458 GGAGATAAGG
*
43468 TAAATTTGTTTA-TATT-
1 TAAATTAGTTTATTATTA
43484 TAAATTAGTTTATTATTA
1 TAAATTAGTTTATTATTA
43502 TAAAT
1 TAAAT
43507 GTTAATTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 4 0.20
18 5 0.25
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TAAATTAGTTTATTATTA
Found at i:43674 original size:46 final size:48
Alignment explanation
Indices: 43611--43702 Score: 129
Period size: 46 Copynumber: 2.0 Consensus size: 48
43601 TTATATAGTT
43611 AAAAAATAATTAATTAGTTTGTT-TT-GTT-AATAGTT-AGTTATATAA
1 AAAAAATAATTAATTAGTTT-TTGTTAGTTAAATAGTTAAGTTATATAA
*
43656 AAAAAATTATTTAATTAGTTTTTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAAA-TAATTAATTAGTTTTTGTTAGTTAAATAGTTAAGTTATAT
43703 TTGTTTGTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
45 8 0.20
46 15 0.37
47 3 0.07
48 7 0.17
49 8 0.20
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (48 bp):
AAAAAATAATTAATTAGTTTTTGTTAGTTAAATAGTTAAGTTATATAA
Found at i:43779 original size:32 final size:33
Alignment explanation
Indices: 43743--43819 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 33
43733 TTAGTTAGTA
*
43743 AGTTTATTAGTAG-TATA-TTATAATGAAAAAAT
1 AGTTTATTAGTAGTTATAGTTAT-ATAAAAAAAT
*
43775 AGTTTATTAGTTAGTTTTAGTTATATAAAAAAAT
1 AGTTTATTAG-TAGTTATAGTTATATAAAAAAAT
*
43809 ATTTTATTAGT
1 AGTTTATTAGT
43820 TGTTTAAGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.26
33 4 0.10
34 21 0.54
35 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (33 bp):
AGTTTATTAGTAGTTATAGTTATATAAAAAAAT
Found at i:43897 original size:16 final size:16
Alignment explanation
Indices: 43865--43911 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
43855 TTTAAAAAGT
*
43865 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
43881 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
43897 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
43912 AAGTTTTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:43906 original size:15 final size:14
Alignment explanation
Indices: 43886--43916 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
43876 GTTTATTAGT
43886 TTATTATATTATAAG
1 TTATTATATTA-AAG
43901 TTATTATATTAAAG
1 TTATTATATTAAAG
43915 TT
1 TT
43917 TTGTGTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:46129 original size:36 final size:36
Alignment explanation
Indices: 46064--46169 Score: 98
Period size: 33 Copynumber: 3.0 Consensus size: 36
46054 TTTTAGTATC
* *
46064 AAATCATTATTATT-AGT-ATTAAATCATTAAAT-ATTT
1 AAATCATTATTATTAAATCATT-AGT-ATTAAATCA-TT
46100 AAATCATTATTATTAAATCATTAGTATTAAATCATT
1 AAATCATTATTATTAAATCATTAGTATTAAATCATT
* * *
46136 -ACT-A-AATTATAAAATCATTAGTATTAAATCATT
1 AAATCATTATTATTAAATCATTAGTATTAAATCATT
46169 A
1 A
46170 TTATAAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
33 27 0.44
34 1 0.02
35 2 0.03
36 23 0.38
37 5 0.08
38 3 0.05
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (36 bp):
AAATCATTATTATTAAATCATTAGTATTAAATCATT
Found at i:46169 original size:8 final size:8
Alignment explanation
Indices: 46081--46136 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
46071 TATTATTAGT
46081 ATTAAATC
1 ATTAAATC
46089 ATTAAAT-
1 ATTAAATC
46096 ATTTAAATC
1 A-TTAAATC
*
46105 ATT--ATT
1 ATTAAATC
46111 ATTAAATC
1 ATTAAATC
*
46119 ATT-AGT-
1 ATTAAATC
46125 ATTAAATC
1 ATTAAATC
46133 ATTA
1 ATTA
46137 CTAAATTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
6 8 0.21
7 5 0.13
8 24 0.63
9 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (8 bp):
ATTAAATC
Found at i:46306 original size:11 final size:11
Alignment explanation
Indices: 46108--47460 Score: 208
Period size: 11 Copynumber: 112.9 Consensus size: 11
46098 TTAAATCATT
46108 ATTATTAAATC
1 ATTATTAAATC
46119 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46133 ATTACT-AA--
1 ATTATTAAATC
*
46141 ATTATAAAATC
1 ATTATTAAATC
46152 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46166 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
46179 ATTACTAAATA
1 ATTATTAAATC
* * *
46190 ATAACTAAATA
1 ATTATTAAATC
46201 ATTATTATAAAATC
1 ATTA-T-T-AAATC
*
46215 ATTATTATAATA
1 ATTATTA-AATC
46227 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
46241 ATTACTAAATC
1 ATTATTAAATC
46252 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
46267 A-T-TTAAATC
1 ATTATTAAATC
*
46276 ATTATCAAATC
1 ATTATTAAATC
46287 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46301 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
46314 ATTACTAAATA
1 ATTATTAAATC
* * *
46325 ATAACTAAATA
1 ATTATTAAATC
*
46336 ATTATTATAAAATT
1 ATTA-T-T-AAATC
*
46350 ATTATTATAATA
1 ATTATTA-AATC
46362 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
46376 ATTACTAAATC
1 ATTATTAAATC
46387 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
*
46402 A-T-TTATATC
1 ATTATTAAATC
46411 ATTATTAAATC
1 ATTATTAAATC
* *
46422 ATTTTTATAATG
1 ATTATTA-AATC
46434 ATTATTACTAAATC
1 ATTA-T--TAAATC
* *
46448 ATTTTTATAATG
1 ATTATTA-AATC
46460 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
46474 ATTACTATAATGATT
1 ATTA-T-TAA--ATC
*
46489 ATTATCAAATC
1 ATTATTAAATC
*
46500 ATTACTAAATC
1 ATTATTAAATC
46511 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
46526 A-T-TTAAATC
1 ATTATTAAATC
46535 ATTAGTATTAAATC
1 A-T--TATTAAATC
46549 ATTATTAAATC
1 ATTATTAAATC
46560 ATTAGTATTAAATC
1 A-T--TATTAAATC
* *
46574 ATCACT-AA--
1 ATTATTAAATC
46582 ATTATTAAATC
1 ATTATTAAATC
46593 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46607 ATTACT-AA--
1 ATTATTAAATC
46615 ATTATTAAATC
1 ATTATTAAATC
46626 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46640 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
46653 ATTACTAAATA
1 ATTATTAAATC
* * *
46664 ATAACTAAATA
1 ATTATTAAATC
46675 ATTATTATAAAATC
1 ATTA-T-T-AAATC
*
46689 ATTATTATAATG
1 ATTATTA-AATC
46701 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
46715 ATTACTAAATC
1 ATTATTAAATC
46726 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
46741 A-T-TTAAATC
1 ATTATTAAATC
46750 ATTATTAAATC
1 ATTATTAAATC
*
46761 ATTAGTAACAAATC
1 ATTA-T--TAAATC
46775 ATTATTAAATC
1 ATTATTAAATC
46786 ATTAGTATTAAATC
1 A-T--TATTAAATC
* *
46800 ATCACT-AA--
1 ATTATTAAATC
*
46808 ATTATGAAATC
1 ATTATTAAATC
46819 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46833 ATTACT-AA--
1 ATTATTAAATC
46841 ATTATTAAATC
1 ATTATTAAATC
46852 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
46866 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
46879 ATTACTAAATA
1 ATTATTAAATC
* * *
46890 ATAACTAAATA
1 ATTATTAAATC
46901 ATTATTATAAAATC
1 ATTA-T-T-AAATC
*
46915 ATTATTATAATG
1 ATTATTA-AATC
46927 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
46941 ATTACTAAATC
1 ATTATTAAATC
46952 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
46967 A-T-TTAAATC
1 ATTATTAAATC
*
46976 ATTATTAAATA
1 ATTATTAAATC
*
46987 ATTAGTAACAAATC
1 ATTA-T--TAAATC
47001 ATTATTAAATC
1 ATTATTAAATC
47012 ATTAGTATTAAATC
1 A-T--TATTAAATC
* *
47026 ATCACT-AA--
1 ATTATTAAATC
47034 ATTATTAAATC
1 ATTATTAAATC
47045 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
47059 ATTACT-AA--
1 ATTATTAAATC
47067 ATTATTAAATC
1 ATTATTAAATC
47078 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
47092 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
47105 ATTACTAAATA
1 ATTATTAAATC
* * *
47116 ATAACTAAATA
1 ATTATTAAATC
47127 ATTATTATAAAATC
1 ATTA-T-T-AAATC
*
47141 ATTATTATAATG
1 ATTATTA-AATC
47153 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
47167 ATTACTAAATC
1 ATTATTAAATC
47178 ATCAAATCATTAAAT-
1 AT----T-ATTAAATC
47193 A-T-TTAAATC
1 ATTATTAAATC
47202 ATTATTAAATC
1 ATTATTAAATC
*
47213 ATTAGTAACAAATC
1 ATTA-T--TAAATC
47227 ATTATTAAATC
1 ATTATTAAATC
47238 ATTAGTATTAAATC
1 A-T--TATTAAATC
* *
47252 ATCACT-AA--
1 ATTATTAAATC
*
47260 ATTATGAAATC
1 ATTATTAAATC
47271 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
47285 ATTACT-AA--
1 ATTATTAAATC
47293 ATTATTAAATC
1 ATTATTAAATC
47304 ATTAGTATTAAATC
1 A-T--TATTAAATC
*
47318 ATTATTATAAATA
1 ATTA-T-TAAATC
* *
47331 ATTACTAAATA
1 ATTATTAAATC
* * *
47342 ATAACTAAATA
1 ATTATTAAATC
47353 ATTATTATAAAATC
1 ATTA-T-T-AAATC
*
47367 ATTATTATAATG
1 ATTATTA-AATC
47379 ATTATTATCAAATC
1 ATTA-T-T-AAATC
*
47393 ATTACTAAATC
1 ATTATTAAATC
* *
47404 ATCA--AATCATT
1 ATTATTAA--ATC
47415 ATTTATTTAAATC
1 A-TTA-TTAAATC
47428 ATTATTAAATC
1 ATTATTAAATC
* *
47439 ATTTTTATAATG
1 ATTATTA-AATC
*
47451 ATTAATAAAT
1 ATTATTAAAT
47461 ACATAGAAAT
Statistics
Matches: 1013, Mismatches: 126, Indels: 406
0.66 0.08 0.26
Matches are distributed among these distances:
8 73 0.07
9 26 0.03
10 29 0.03
11 321 0.32
12 103 0.10
13 102 0.10
14 294 0.29
15 29 0.03
16 36 0.04
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.41
Consensus pattern (11 bp):
ATTATTAAATC
Found at i:46308 original size:135 final size:135
Alignment explanation
Indices: 46141--46583 Score: 603
Period size: 135 Copynumber: 3.4 Consensus size: 135
46131 TCATTACTAA
46141 ATTATAAAATCATTAGTATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTAT
1 ATTATAAAATCATTAGTATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTAT
46206 TATAAAATCATTATTATAATAATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTT
66 TATAAAATCATTATTATAATAATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTT
46271 AAATC
131 AAATC
*
46276 ATTATCAAATCATTAGTATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTAT
1 ATTATAAAATCATTAGTATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTAT
*
46341 TATAAAATTATTATTATAATAATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTT
66 TATAAAATCATTATTATAATAATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTT
*
46406 ATATC
131 AAATC
* * * *
46411 ATTATTAAATCATT--T-TTATAATGATTATTACTAAATCATT--T---T--T-A-T-AATGATT
1 ATTATAAAATCATTAGTATTA-AATCATTATTA-TAAATAATTACTAAATAATAACTAAATAATT
* * *
46463 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATAT
64 ATTATAAAATCATTATTATAATAATTATTATCAAATCATTACTAAATCATCAAATCATTAAATAT
46528 TTAAATC
129 TTAAATC
* * *
46535 ATTAGTATTAAATCA-T--TATTAAATCATTAGTATTAAATCATCACTAAAT
1 ATTA-TA--AAATCATTAGTATTAAATCATTATTA-TAAATAATTACTAAAT
46584 TATTAAATCA
Statistics
Matches: 280, Mismatches: 17, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
124 77 0.28
125 2 0.01
126 20 0.07
127 10 0.04
128 1 0.00
129 1 0.00
131 1 0.00
132 4 0.01
133 11 0.04
134 8 0.03
135 145 0.52
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (135 bp):
ATTATAAAATCATTAGTATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTAT
TATAAAATCATTATTATAATAATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTT
AAATC
Found at i:46437 original size:20 final size:19
Alignment explanation
Indices: 46395--46437 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
46385 TCATCAAATC
* *
46395 ATTAAATATTTATATCATT
1 ATTAAATATTTATATAATG
*
46414 ATTAAATCATTTTTATAATG
1 ATTAAAT-ATTTATATAATG
46434 ATTA
1 ATTA
46438 TTACTAAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (19 bp):
ATTAAATATTTATATAATG
Found at i:46445 original size:26 final size:26
Alignment explanation
Indices: 46411--46502 Score: 141
Period size: 26 Copynumber: 3.5 Consensus size: 26
46401 TATTTATATC
*
46411 ATTATTAAATCATTTTTATAATGATT
1 ATTATCAAATCATTTTTATAATGATT
46437 ATTA-CTAAATCATTTTTATAATGATT
1 ATTATC-AAATCATTTTTATAATGATT
**
46463 ATTATCAAATCATTACTATAATGATT
1 ATTATCAAATCATTTTTATAATGATT
46489 ATTATCAAATCATT
1 ATTATCAAATCATT
46503 ACTAAATCAT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
26 60 0.98
27 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (26 bp):
ATTATCAAATCATTTTTATAATGATT
Found at i:46524 original size:16 final size:16
Alignment explanation
Indices: 46512--46552 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
46502 TACTAAATCA
46512 TCAAATCATTAAATAT
1 TCAAATCATTAAATAT
* *
46528 TTAAATCATT-AGTAT
1 TCAAATCATTAAATAT
46543 T-AAATCATTA
1 TCAAATCATTA
46553 TTAAATCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 8 0.36
15 5 0.23
16 9 0.41
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (16 bp):
TCAAATCATTAAATAT
Found at i:46586 original size:33 final size:33
Alignment explanation
Indices: 46549--47319 Score: 290
Period size: 33 Copynumber: 23.8 Consensus size: 33
46539 GTATTAAATC
46549 ATTATTAAATCATTAGTATTAAATCATCACTAA
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
*
46582 ATTATTAAATCATTAGTATTAAATCATTACTAA
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
46615 ATTATTAAATCATTAGTATTAAATCAT---T--
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
* * * * * *
46643 ATTA-TAAATAATTACTA-AATAATAACTAAATAA
1 ATTATTAAATCATTAGTATTA-AATCA-TCACTAA
* * *
46676 TTATTATAAAATCATTATTA-T-AATGAT---T--
1 --ATTATTAAATCATTAGTATTAAATCATCACTAA
* * *
46704 ATTATCAAATCATTACTA--AATCATCAAATCATTAA
1 ATTATTAAATCATTAGTATTAA--ATC--ATCACTAA
* *
46739 ATAT-TTAAATCA-T--TATTAAATCATTAGTAACAAA
1 AT-TATTAAATCATTAGTATTAAATC---A-TCACTAA
46773 TCATTATTAAATCATTAGTATTAAATCATCACTAA
1 --ATTATTAAATCATTAGTATTAAATCATCACTAA
* *
46808 ATTATGAAATCATTAGTATTAAATCATTACTAA
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
46841 ATTATTAAATCATTAGTATTAAATCAT---T--
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
* * * * * *
46869 ATTA-TAAATAATTACTA-AATAATAACTAAATAA
1 ATTATTAAATCATTAGTATTA-AATCA-TCACTAA
* * *
46902 TTATTATAAAATCATTATTA-T-AATGAT---T--
1 --ATTATTAAATCATTAGTATTAAATCATCACTAA
* * *
46930 ATTATCAAATCATTACTA--AATCATCAAATCATTAA
1 ATTATTAAATCATTAGTATTAA--ATC--ATCACTAA
* * * * *
46965 ATAT-TTAAATCATTATTA-AATAATTAGTAACAAA
1 AT-TATTAAATCATTAGTATTA-AATCA-TCACTAA
46999 TCATTATTAAATCATTAGTATTAAATCATCACTAA
1 --ATTATTAAATCATTAGTATTAAATCATCACTAA
*
47034 ATTATTAAATCATTAGTATTAAATCATTACTAA
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
47067 ATTATTAAATCATTAGTATTAAATCAT---T--
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
* * * * * *
47095 ATTA-TAAATAATTACTA-AATAATAACTAAATAA
1 ATTATTAAATCATTAGTATTA-AATCA-TCACTAA
* * *
47128 TTATTATAAAATCATTATTA-T-AATGAT---T--
1 --ATTATTAAATCATTAGTATTAAATCATCACTAA
* * *
47156 ATTATCAAATCATTACTA--AATCATCAAATCATTAA
1 ATTATTAAATCATTAGTATTAA--ATC--ATCACTAA
* *
47191 ATAT-TTAAATCA-T--TATTAAATCATTAGTAACAAA
1 AT-TATTAAATCATTAGTATTAAATC---A-TCACTAA
47225 TCATTATTAAATCATTAGTATTAAATCATCACTAA
1 --ATTATTAAATCATTAGTATTAAATCATCACTAA
* *
47260 ATTATGAAATCATTAGTATTAAATCATTACTAA
1 ATTATTAAATCATTAGTATTAAATCATCACTAA
47293 ATTATTAAATCATTAGTATTAAATCAT
1 ATTATTAAATCATTAGTATTAAATCAT
47320 TATTATAAAT
Statistics
Matches: 577, Mismatches: 71, Indels: 180
0.70 0.09 0.22
Matches are distributed among these distances:
26 54 0.09
27 45 0.08
28 21 0.04
30 12 0.02
31 3 0.01
32 10 0.02
33 241 0.42
34 30 0.05
35 64 0.11
36 75 0.13
37 4 0.01
39 18 0.03
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.40
Consensus pattern (33 bp):
ATTATTAAATCATTAGTATTAAATCATCACTAA
Found at i:46628 original size:19 final size:19
Alignment explanation
Indices: 46565--46629 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
46555 AAATCATTAG
*
46565 TATTAAATCATCACTAAAT
1 TATTAAATCATTACTAAAT
*
46584 TATTAAATCA-T--T--AG
1 TATTAAATCATTACTAAAT
46598 TATTAAATCATTACTAAAT
1 TATTAAATCATTACTAAAT
46617 TATTAAATCATTA
1 TATTAAATCATTA
46630 GTATTAAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 11 0.29
15 1 0.03
16 1 0.03
17 1 0.03
19 24 0.63
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.42
Consensus pattern (19 bp):
TATTAAATCATTACTAAAT
Found at i:46690 original size:215 final size:221
Alignment explanation
Indices: 46413--47441 Score: 1701
Period size: 226 Copynumber: 4.6 Consensus size: 221
46403 TTTATATCAT
* * * *** * *
46413 TATTAAATCATTTTTATAATGATTATTACTAAATCATTTTTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTATTATAA--ATAATTACTAAATAATAACTA-AATAATTATTATAAAATCATTA
* *
46478 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC-ATT-AGT
63 TTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCTATTAAAT
*
46541 -A-T-T-AAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATTAAATCATTAGTATT
128 CATTATAAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTATT
46602 AAATCATTACTAAATTATTAAATCATTAG
193 AAATCATTACTAAATTATTAAATCATTAG
46631 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
1 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
46696 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATC
66 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC--TATTAAATC
46761 ATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTA
129 ATTA-T-A-AAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTA
46826 TTAAATCATTACTAAATTATTAAATCATTAG
191 TTAAATCATTACTAAATTATTAAATCATTAG
46857 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
1 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
*
46922 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATA
66 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC--TATTAAATC
*
46987 ATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATTAAATCATTAGTA
129 ATTA-T-A-AAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTA
47052 TTAAATCATTACTAAATTATTAAATCATTAG
191 TTAAATCATTACTAAATTATTAAATCATTAG
47083 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
1 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
47148 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATC
66 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC--TATTAAATC
47213 ATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTA
129 ATTA-T-A-AAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTA
47278 TTAAATCATTACTAAATTATTAAATCATTAG
191 TTAAATCATTACTAAATTATTAAATCATTAG
47309 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
1 TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
**
47374 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTATTTATTTAAATCATTATTAAATC
66 TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC--TATTAAATC
47439 ATT
129 ATT
47442 TTTATAATGA
Statistics
Matches: 783, Mismatches: 17, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
215 76 0.10
216 16 0.02
218 21 0.03
219 2 0.00
220 1 0.00
221 1 0.00
223 1 0.00
226 665 0.85
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (221 bp):
TATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATTATTATAAAATCATTATTA
TAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCTATTAAATCAT
TATAAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATCATTAGTATTAAA
TCATTACTAAATTATTAAATCATTAG
Found at i:46706 original size:12 final size:13
Alignment explanation
Indices: 46095--47396 Score: 257
Period size: 14 Copynumber: 93.2 Consensus size: 13
46085 AATCATTAAA
46095 TATT-TAAATCAT
1 TATTATAAATCAT
46107 TATTATTAAATCAT
1 TATTA-TAAATCAT
*
46121 TAGTATTAAATCATT
1 TATTA-TAAATCA-T
46136 ACTAAATTATAAAATCAT
1 --T--ATTAT-AAATCAT
*
46154 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46168 TATTATAAAT-A-
1 TATTATAAATCAT
46179 -ATTACTAAAT-A-
1 TATTA-TAAATCAT
* *
46190 -ATAACTAAATAAT
1 TATTA-TAAATCAT
46203 TATTATAAAATCAT
1 TATTAT-AAATCAT
*
46217 TATTAT-AATAAT
1 TATTATAAATCAT
46229 TATTATCAAATCAT
1 TATTAT-AAATCAT
46243 TACTAAATCATCAAATCAT
1 TA-T---T-AT-AAATCAT
*
46262 TAAATATTTAAATCAT
1 T--AT-TATAAATCAT
*
46278 TA-T-CAAATCAT
1 TATTATAAATCAT
*
46289 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46303 TATTATAAAT-A-
1 TATTATAAATCAT
46314 -ATTACTAAAT-A-
1 TATTA-TAAATCAT
* *
46325 -ATAACTAAATAAT
1 TATTA-TAAATCAT
*
46338 TATTATAAAATTAT
1 TATTAT-AAATCAT
*
46352 TATTAT-AATAAT
1 TATTATAAATCAT
46364 TATTATCAAATCAT
1 TATTAT-AAATCAT
46378 TACTAAATCATCAAATCAT
1 TA-T---T-AT-AAATCAT
* *
46397 TAAATATTTATATCAT
1 T--AT-TATAAATCAT
46413 TA-T-TAAATCAT
1 TATTATAAATCAT
* *
46424 TTTTAT-AATGAT
1 TATTATAAATCAT
46436 TATTACTAAATCAT
1 TATTA-TAAATCAT
* *
46450 TTTTAT-AATGAT
1 TATTATAAATCAT
46462 TATTATCAAATCAT
1 TATTAT-AAATCAT
* *
46476 TACTAT-AATGAT
1 TATTATAAATCAT
46488 TATTATCAAATCAT
1 TATTAT-AAATCAT
46502 TACTAAATCATCAAATCAT
1 TA-T---T-AT-AAATCAT
*
46521 TAAATATTTAAATCAT
1 T--AT-TATAAATCAT
*
46537 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46551 TA-T-TAAATCAT
1 TATTATAAATCAT
*
46562 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46576 CACTAAATTATTAAATCAT
1 ---T--ATTA-TAAATCAT
*
46595 TAGTATTAAATCATT
1 TATTA-TAAATCA-T
46610 ACTAAATTATTAAATCAT
1 --T--ATTA-TAAATCAT
*
46628 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46642 TATTATAAAT-A-
1 TATTATAAATCAT
46653 -ATTACTAAAT-A-
1 TATTA-TAAATCAT
* *
46664 -ATAACTAAATAAT
1 TATTA-TAAATCAT
46677 TATTATAAAATCAT
1 TATTAT-AAATCAT
*
46691 TATTAT-AATGAT
1 TATTATAAATCAT
46703 TATTATCAAATCAT
1 TATTAT-AAATCAT
46717 TACTAAATCATCAAATCAT
1 TA-T---T-AT-AAATCAT
*
46736 TAAATATTTAAATCAT
1 T--AT-TATAAATCAT
46752 TA-T-TAAATCAT
1 TATTATAAATCAT
* *
46763 TAGTAACAAATCAT
1 TA-TTATAAATCAT
46777 TA-T-TAAATCAT
1 TATTATAAATCAT
*
46788 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46802 CACTAAATTATGAAATCAT
1 ---T--ATTAT-AAATCAT
*
46821 TAGTATTAAATCATT
1 TATTA-TAAATCA-T
46836 ACTAAATTATTAAATCAT
1 --T--ATTA-TAAATCAT
*
46854 TAGTATTAAATCAT
1 TATTA-TAAATCAT
46868 TATTATAAAT-A-
1 TATTATAAATCAT
46879 -ATTACTAAAT-A-
1 TATTA-TAAATCAT
* *
46890 -ATAACTAAATAAT
1 TATTA-TAAATCAT
46903 TATTATAAAATCAT
1 TATTAT-AAATCAT
*
46917 TATTAT-AATGAT
1 TATTATAAATCAT
46929 TATTATCAAATCAT
1 TATTAT-AAATCAT
46943 TACTAAATCATCAAATCAT
1 TA-T---T-AT-AAATCAT
*
46962 TAAATATTTAAATCAT
1 T--AT-TATAAATCAT
*
46978 TA-T-TAAATAAT
1 TATTATAAATCAT
* *
46989 TAGTAACAAATCAT
1 TA-TTATAAATCAT
47003 TA-T-TAAATCAT
1 TATTATAAATCAT
*
47014 TAGTATTAAATCAT
1 TATTA-TAAATCAT
47028 CACTAAATTATTAAATCAT
1 ---T--ATTA-TAAATCAT
*
47047 TAGTATTAAATCATT
1 TATTA-TAAATCA-T
47062 ACTAAATTATTAAATCAT
1 --T--ATTA-TAAATCAT
*
47080 TAGTATTAAATCAT
1 TATTA-TAAATCAT
47094 TATTATAAAT-A-
1 TATTATAAATCAT
47105 -ATTACTAAAT-A-
1 TATTA-TAAATCAT
* *
47116 -ATAACTAAATAAT
1 TATTA-TAAATCAT
47129 TATTATAAAATCAT
1 TATTAT-AAATCAT
*
47143 TATTAT-AATGAT
1 TATTATAAATCAT
47155 TATTATCAAATCAT
1 TATTAT-AAATCAT
47169 TACTAAATCATCAAATCAT
1 TA-T---T-AT-AAATCAT
*
47188 TAAATATTTAAATCAT
1 T--AT-TATAAATCAT
47204 TA-T-TAAATCAT
1 TATTATAAATCAT
* *
47215 TAGTAACAAATCAT
1 TA-TTATAAATCAT
47229 TA-T-TAAATCAT
1 TATTATAAATCAT
*
47240 TAGTATTAAATCAT
1 TATTA-TAAATCAT
47254 CACTAAATTATGAAATCAT
1 ---T--ATTAT-AAATCAT
*
47273 TAGTATTAAATCATT
1 TATTA-TAAATCA-T
47288 ACTAAATTATTAAATCAT
1 --T--ATTA-TAAATCAT
*
47306 TAGTATTAAATCAT
1 TATTA-TAAATCAT
47320 TATTATAAAT-A-
1 TATTATAAATCAT
47331 -ATTACTAAAT-A-
1 TATTA-TAAATCAT
* *
47342 -ATAACTAAATAAT
1 TATTA-TAAATCAT
47355 TATTATAAAATCAT
1 TATTAT-AAATCAT
*
47369 TATTAT-AATGAT
1 TATTATAAATCAT
47381 TATTATCAAATCAT
1 TATTAT-AAATCAT
47395 TA
1 TA
47397 CTAAATCATC
Statistics
Matches: 1027, Mismatches: 93, Indels: 338
0.70 0.06 0.23
Matches are distributed among these distances:
10 24 0.02
11 173 0.17
12 122 0.12
13 41 0.04
14 381 0.37
15 14 0.01
16 56 0.05
17 15 0.01
18 26 0.03
19 163 0.16
20 6 0.01
21 6 0.01
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (13 bp):
TATTATAAATCAT
Found at i:46781 original size:226 final size:226
Alignment explanation
Indices: 46528--47441 Score: 1765
Period size: 226 Copynumber: 4.0 Consensus size: 226
46518 CATTAAATAT
** *
46528 TTAAATCATTAGTATTAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATTAAATC
1 TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
46593 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
66 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
46658 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
131 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
46723 ATCATCAAATCATTAAATATTTAAATCATTA
196 ATCATCAAATCATTAAATATTTAAATCATTA
46754 TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
1 TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
46819 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
66 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
46884 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
131 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
46949 ATCATCAAATCATTAAATATTTAAATCATTA
196 ATCATCAAATCATTAAATATTTAAATCATTA
* *
46980 TTAAATAATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATTAAATC
1 TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
47045 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
66 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
47110 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
131 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
47175 ATCATCAAATCATTAAATATTTAAATCATTA
196 ATCATCAAATCATTAAATATTTAAATCATTA
47206 TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
1 TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
47271 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
66 ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
47336 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
131 TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
**
47401 ATCATCAAATCATTATTTATTTAAATCATTA
196 ATCATCAAATCATTAAATATTTAAATCATTA
47432 TTAAATCATT
1 TTAAATCATT
47442 TTTATAATGA
Statistics
Matches: 679, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
226 679 1.00
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (226 bp):
TTAAATCATTAGTAACAAATCATTATTAAATCATTAGTATTAAATCATCACTAAATTATGAAATC
ATTAGTATTAAATCATTACTAAATTATTAAATCATTAGTATTAAATCATTATTATAAATAATTAC
TAAATAATAACTAAATAATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAA
ATCATCAAATCATTAAATATTTAAATCATTA
Found at i:46848 original size:19 final size:19
Alignment explanation
Indices: 46791--46855 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
46781 AAATCATTAG
*
46791 TATTAAATCATCACTAAAT
1 TATTAAATCATTACTAAAT
* *
46810 TATGAAATCA-T--T--AG
1 TATTAAATCATTACTAAAT
46824 TATTAAATCATTACTAAAT
1 TATTAAATCATTACTAAAT
46843 TATTAAATCATTA
1 TATTAAATCATTA
46856 GTATTAAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
14 10 0.28
15 1 0.03
16 1 0.03
17 1 0.03
19 23 0.64
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.40
Consensus pattern (19 bp):
TATTAAATCATTACTAAAT
Found at i:47080 original size:19 final size:19
Alignment explanation
Indices: 47017--47081 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
47007 AAATCATTAG
*
47017 TATTAAATCATCACTAAAT
1 TATTAAATCATTACTAAAT
*
47036 TATTAAATCA-T--T--AG
1 TATTAAATCATTACTAAAT
47050 TATTAAATCATTACTAAAT
1 TATTAAATCATTACTAAAT
47069 TATTAAATCATTA
1 TATTAAATCATTA
47082 GTATTAAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 11 0.29
15 1 0.03
16 1 0.03
17 1 0.03
19 24 0.63
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.42
Consensus pattern (19 bp):
TATTAAATCATTACTAAAT
Found at i:47300 original size:19 final size:19
Alignment explanation
Indices: 47243--47307 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
47233 AAATCATTAG
*
47243 TATTAAATCATCACTAAAT
1 TATTAAATCATTACTAAAT
* *
47262 TATGAAATCA-T--T--AG
1 TATTAAATCATTACTAAAT
47276 TATTAAATCATTACTAAAT
1 TATTAAATCATTACTAAAT
47295 TATTAAATCATTA
1 TATTAAATCATTA
47308 GTATTAAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
14 10 0.28
15 1 0.03
16 1 0.03
17 1 0.03
19 23 0.64
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.40
Consensus pattern (19 bp):
TATTAAATCATTACTAAAT
Found at i:47366 original size:49 final size:46
Alignment explanation
Indices: 47260--47376 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 46
47250 TCATCACTAA
* * * * *
47260 ATTATGAAATCATTAGTATTAAATCATTACTAAATTATTAAATCATT
1 ATTATAAAATCATTATTA-TAAATAATTACTAAATTACTAAATAATT
* *
47307 AGTATTAAATCATTATTATAAATAATTACTAAATAATAACTAAATAATT
1 ATTATAAAATCATTATTATAAATAATTACTAAAT--T-ACTAAATAATT
47356 ATTATAAAATCATTATTATAA
1 ATTATAAAATCATTATTATAA
47377 TGATTATTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 15 0.25
47 15 0.25
48 1 0.02
49 28 0.47
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.41
Consensus pattern (46 bp):
ATTATAAAATCATTATTATAAATAATTACTAAATTACTAAATAATT
Found at i:50553 original size:28 final size:28
Alignment explanation
Indices: 50501--50554 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
50491 ATAATCTAAT
**
50501 ATATAACTTAAACTAACAATTTAATATA
1 ATATAACTTAAACTAACAAACTAATATA
50529 ATATAACTTAAACTAACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
50555 ATTTATACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATATA
Found at i:50561 original size:28 final size:28
Alignment explanation
Indices: 50497--50561 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
50487 TTATATAATC
**
50497 TAATATATAACTTAAACTAACAATTTAA
1 TAATATATAACTTAAACTAACAAACTAA
50525 T-ATAATATAACTTAAACTAACAAACTAA
1 TAAT-ATATAACTTAAACTAACAAACTAA
*
50553 TAATTTATA
1 TAATATATA
50562 CTAACAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 2 0.06
28 28 0.88
29 2 0.06
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (28 bp):
TAATATATAACTTAAACTAACAAACTAA
Found at i:50564 original size:21 final size:21
Alignment explanation
Indices: 50531--50579 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
50521 TTAATATAAT
50531 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
50552 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
50573 ATTAACT
1 A-TAACT
50580 AAATTTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:51247 original size:30 final size:30
Alignment explanation
Indices: 51212--51311 Score: 124
Period size: 30 Copynumber: 3.6 Consensus size: 30
51202 TTTGCCGAGC
*
51212 TGGGCGTGCATGGAGGTCGTTGGGCGTGCC
1 TGGGCGTGCATGGAGGTCGTTGGGCGTGCA
51242 TGGGCGTGCATGGA-G--G-T---CGTGCA
1 TGGGCGTGCATGGAGGTCGTTGGGCGTGCA
* *
51265 TGGGCGTGTATGAAGGTCGTTGGGCGTGCA
1 TGGGCGTGCATGGAGGTCGTTGGGCGTGCA
51295 TGGGCGTGCATGGAGGT
1 TGGGCGTGCATGGAGGT
51312 GCTGGTAGGT
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
26 2 0.03
27 2 0.03
29 1 0.02
30 35 0.60
ACGTcount: A:0.11, C:0.16, G:0.49, T:0.24
Consensus pattern (30 bp):
TGGGCGTGCATGGAGGTCGTTGGGCGTGCA
Found at i:51268 original size:23 final size:22
Alignment explanation
Indices: 51236--51297 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
51226 GGTCGTTGGG
51236 CGTGCCTGGGCGTGCATGGAGGT
1 CGTG-CTGGGCGTGCATGGAGGT
* *
51259 CGTGCATGGGCGTGTATGAAGGT
1 CGTGC-TGGGCGTGCATGGAGGT
51282 CGT--TGGGCGTGCATGG
1 CGTGCTGGGCGTGCATGG
51298 GCGTGCATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 11 0.32
22 1 0.03
23 22 0.65
ACGTcount: A:0.11, C:0.18, G:0.47, T:0.24
Consensus pattern (22 bp):
CGTGCTGGGCGTGCATGGAGGT
Found at i:51313 original size:10 final size:10
Alignment explanation
Indices: 51232--51307 Score: 59
Period size: 10 Copynumber: 7.3 Consensus size: 10
51222 TGGAGGTCGT
*
51232 TGGGCGTGCC
1 TGGGCGTGCA
51242 TGGGCGTGCA
1 TGGGCGTGCA
51252 TGGAGGTCGTGCA
1 T-G-GG-CGTGCA
*
51265 TGGGCGTGTA
1 TGGGCGTGCA
51275 TGAAGGTCGT---
1 TG--GG-CGTGCA
51285 TGGGCGTGCA
1 TGGGCGTGCA
51295 TGGGCGTGCA
1 TGGGCGTGCA
51305 TGG
1 TGG
51308 AGGTGCTGGT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
7 3 0.05
8 2 0.04
10 32 0.58
11 3 0.05
12 5 0.09
13 10 0.18
ACGTcount: A:0.11, C:0.17, G:0.49, T:0.24
Consensus pattern (10 bp):
TGGGCGTGCA
Found at i:51353 original size:29 final size:29
Alignment explanation
Indices: 51318--51404 Score: 147
Period size: 29 Copynumber: 3.0 Consensus size: 29
51308 AGGTGCTGGT
*
51318 AGGTCGCAGGGCATGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
*
51347 AGGTCGCTGGGCGTGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
*
51376 AGGTCGCCGGGCGTGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
51405 CCCGGAACTG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.16, C:0.32, G:0.37, T:0.15
Consensus pattern (29 bp):
AGGTCGCAGGGCGTGCATGGCGACCTACC
Found at i:52208 original size:60 final size:60
Alignment explanation
Indices: 52132--52278 Score: 190
Period size: 60 Copynumber: 2.5 Consensus size: 60
52122 AATATAATGA
* * * *
52132 ATAGTCGAGTGATCATTTTGTAACTTTTAATAGTTGAGGGACTCAACAAAGCAA-CTCTCT
1 ATAGTCGAGGGATCATTTTGTAACTTTTAATAATTAAGGGACTCAACAAAGCAATATC-CT
* * * *
52192 ATAGTCGGGGGATCATTTTATAGCTTTTAATAATTAAGGGACTCAATAAAGCAATATCCT
1 ATAGTCGAGGGATCATTTTGTAACTTTTAATAATTAAGGGACTCAACAAAGCAATATCCT
52252 ATAGTCGAGGGATCATTTGTGT-ACTTT
1 ATAGTCGAGGGATCATTT-TGTAACTTT
52279 ATCCTATTTA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
60 70 0.95
61 4 0.05
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (60 bp):
ATAGTCGAGGGATCATTTTGTAACTTTTAATAATTAAGGGACTCAACAAAGCAATATCCT
Found at i:53678 original size:18 final size:18
Alignment explanation
Indices: 53655--53689 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
53645 ACTTATGATT
*
53655 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGAACCACTA
53673 TGTCCCGAAGAACCACT
1 TGTCCCGAAGAACCACT
53690 CCTTAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.17
Consensus pattern (18 bp):
TGTCCCGAAGAACCACTA
Found at i:54313 original size:13 final size:13
Alignment explanation
Indices: 54295--54355 Score: 95
Period size: 13 Copynumber: 4.7 Consensus size: 13
54285 TGCGTCATAA
54295 ATTTATGACGCGC
1 ATTTATGACGCGC
**
54308 ATTTATGAAACGC
1 ATTTATGACGCGC
*
54321 ATTTATGACGCAC
1 ATTTATGACGCGC
54334 ATTTATGACGCGC
1 ATTTATGACGCGC
54347 ATTTATGAC
1 ATTTATGAC
54356 TTACATTGCG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:54440 original size:85 final size:85
Alignment explanation
Indices: 54334--54498 Score: 276
Period size: 85 Copynumber: 1.9 Consensus size: 85
54324 TATGACGCAC
* * * *
54334 ATTTATGACGCGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATGA
1 ATTTATGACACACATTTATGACTTACATTGCGCGTCATCGAAGCCCCCGTCATAAATGAAAATGA
*
54399 CACACATTTGTGTGTTATAA
66 CACACATTCGTGTGTTATAA
*
54419 ATTTATGACACACATTTATGACTTACATTGCGTGTCATCGAAGCCCCCGTCATAAATGAAAATGA
1 ATTTATGACACACATTTATGACTTACATTGCGCGTCATCGAAGCCCCCGTCATAAATGAAAATGA
54484 CACACATTCGTGTGT
66 CACACATTCGTGTGT
54499 CGTGATTGTA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
85 74 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (85 bp):
ATTTATGACACACATTTATGACTTACATTGCGCGTCATCGAAGCCCCCGTCATAAATGAAAATGA
CACACATTCGTGTGTTATAA
Found at i:56164 original size:2 final size:2
Alignment explanation
Indices: 56157--56202 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
56147 CACAACTTTG
*
56157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56198 AT AT A
1 AT AT A
56203 ATTTCAATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:62637 original size:82 final size:80
Alignment explanation
Indices: 62426--62710 Score: 302
Period size: 83 Copynumber: 3.5 Consensus size: 80
62416 GCCACGGCAT
* ** * * * *
62426 AGTAGTATTTTAGCGACGTTTATATTAAAACGCAGCAATTAGGTTCATCTATAGTGGCGTTTCTT
1 AGTAGTACTTTAGCGGTGTTTTTATAAAAACGCCGCAA-TAGGTTCATCTATAGTGGCTTTTC-T
*
62491 CAACAAACACCGCAATAA
64 CAACAAACGCCGCAA-AA
* * *
62509 AGTAGTACTTTAGCGGCGTTTTTATACAAACGCCGCAATAGGTTCATCCATAGTGGCTTTTCTCA
1 AGTAGTACTTTAGCGGTGTTTTTATAAAAACGCCGCAATAGGTTCATCTATAGTGGCTTTTCTCA
*
62574 ACAAATGCCTTG-AAAA
66 ACAAACGCC--GCAAAA
* * ** * *
62590 AGTAGTACTTTAGCGGTGTTTGTATAAAAATGTTGTAATAGGGTTCATCTATAGTGGCATTTTTT
1 AGTAGTACTTTAGCGGTGTTTTTATAAAAACGCCGCAATA-GGTTCATCTATAGTGGC-TTTTCT
62655 CAACAAACGCCGCAAAA
64 CAACAAACGCCGCAAAA
* * *
62672 GAGTAGTATTTTAGCGGTATTTTTATACAAACGCCGCAA
1 -AGTAGTACTTTAGCGGTGTTTTTATAAAAACGCCGCAA
62711 CAAAATAGTA
Statistics
Matches: 168, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
81 46 0.27
82 44 0.26
83 78 0.46
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (80 bp):
AGTAGTACTTTAGCGGTGTTTTTATAAAAACGCCGCAATAGGTTCATCTATAGTGGCTTTTCTCA
ACAAACGCCGCAAAA
Found at i:62737 original size:41 final size:41
Alignment explanation
Indices: 62657--62745 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 41
62647 CATTTTTTCA
* * ** *
62657 ACAAACGCCGCAAAAGAGTAGTATTTTAGCGGTATTTTTAT
1 ACAAACGCCGCAAAAGAATAGTACTTTAGCGACACTTTTAT
*
62698 ACAAACGCCGCAACAA-AATAGTACTTTAGCGACGCTTTTAT
1 ACAAACGCCGCAA-AAGAATAGTACTTTAGCGACACTTTTAT
*
62739 TCAAACG
1 ACAAACG
62746 TTGCAATAGG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 38 0.95
42 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (41 bp):
ACAAACGCCGCAAAAGAATAGTACTTTAGCGACACTTTTAT
Found at i:65575 original size:42 final size:42
Alignment explanation
Indices: 65466--65678 Score: 248
Period size: 43 Copynumber: 5.0 Consensus size: 42
65456 AATTAGAGGT
*
65466 GTTTGTATCCAAAAACGCCGCTATAGATATGACCTTTTGCGGC
1 GTTTGT-TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGC
* * * * *
65509 GTTTGTATCCAAAAACACCACTATAGATCTGACATTTTACGAC
1 GTTTGT-TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGC
65552 GTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGC
1 GTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGC
* * * * *
65594 ATTTTTTTCC-AAAACACCACTATAGATATCGACCTTTTGCGGC
1 -GTTTGTTCCAAAAACGCCGCTATAGATCT-GACCTTTTGCGGC
* * *
65637 GTCTGTTCCAAAAATGCCGCTATAGATCTTGACCTATTGCGG
1 GTTTGTTCCAAAAACGCCGCTATAGATC-TGACCTTTTGCGG
65679 TATTTTTTGT
Statistics
Matches: 142, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
42 53 0.37
43 88 0.62
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
GTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGC
Found at i:65644 original size:85 final size:85
Alignment explanation
Indices: 65473--65686 Score: 295
Period size: 85 Copynumber: 2.5 Consensus size: 85
65463 GGTGTTTGTA
* * * * *
65473 TCCAAAAACGCCGCTATAGATATGACCTTTTGCGGCGTTTGTATCCAAAAACACCACTATAGATC
1 TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCATTTTTTTCCAAAAACACCACTATAGATA
*
65538 TGACATTTTACGACGTTTGT
66 TGACATTTTACGACGTCTGT
65558 TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCATTTTTTTCC-AAAACACCACTATAGATA
1 TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCATTTTTTTCCAAAAACACCACTATAGATA
* * *
65622 TCGACCTTTTGCGGCGTCTGT
66 T-GACATTTTACGACGTCTGT
* * *
65643 TCCAAAAATGCCGCTATAGATCTTGACCTATTGCGGTATTTTTT
1 TCCAAAAACGCCGCTATAGATC-TGACCTTTTGCGGCATTTTTT
65687 GTTCTCAAAC
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
84 18 0.16
85 78 0.68
86 19 0.17
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (85 bp):
TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCATTTTTTTCCAAAAACACCACTATAGATA
TGACATTTTACGACGTCTGT
Found at i:78438 original size:22 final size:22
Alignment explanation
Indices: 78413--78486 Score: 121
Period size: 22 Copynumber: 3.4 Consensus size: 22
78403 GGACTGCTAT
* * *
78413 GTCCCGAAGGACCACTAGATAT
1 GTCCCGAAAGACCACTGGATAC
78435 GTCCCGAAAGACCACTGGATAC
1 GTCCCGAAAGACCACTGGATAC
78457 GTCCCGAAAGACCACTGGATAC
1 GTCCCGAAAGACCACTGGATAC
78479 GTCCCGAA
1 GTCCCGAA
78487 TGACTAATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (22 bp):
GTCCCGAAAGACCACTGGATAC
Found at i:79376 original size:17 final size:18
Alignment explanation
Indices: 79344--79378 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
79334 GTCTTAAATC
*
79344 ACATATTTATATTACATA
1 ACATATATATATTACATA
79362 ACATATATA-ATTACATA
1 ACATATATATATTACATA
79379 CACTACTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (18 bp):
ACATATATATATTACATA
Found at i:82211 original size:23 final size:23
Alignment explanation
Indices: 82180--82245 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
82170 TCTTATATGG
*
82180 CACTACGGTGCATTTCTACGCGA
1 CACTTCGGTGCATTTCTACGCGA
* * *
82203 CACTTCGGTGCAATTCTACGTGG
1 CACTTCGGTGCATTTCTACGCGA
* *
82226 CACTTCGGTGTATTTATACG
1 CACTTCGGTGCATTTCTACG
82246 AGCTGTAGTG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (23 bp):
CACTTCGGTGCATTTCTACGCGA
Found at i:86005 original size:317 final size:317
Alignment explanation
Indices: 85423--86054 Score: 1077
Period size: 317 Copynumber: 2.0 Consensus size: 317
85413 CAAAAGATAA
* * *
85423 AAGATATGCTAGATTGAGAGGTTCCAAAGAATGTATCGGAAGTCCGGAGTTTCCTTGGAGTTGTC
1 AAGATATGATAGATTGAGAGGTTCCAAAGAATGTATCGAAAGTCCGGAGTTTCCTTGGACTTGTC
* *
85488 GGTTATTATCGAAGATTCGTTAAGAATTTTTCGATGATAGTGCTGCCTTTAATGAAGCTAATAAG
66 GGTTATTATCGAAGATTCGTTAAGAATTTTTCGATGATAGTACTACCTTTAATGAAGCTAATAAG
85553 AAAAAATGTATCGTTTGTTTGGACTCCTGAATGTTAAGAAAGTTTTGAAGCTTTAAAGGGAATTC
131 AAAAAATGTATCGTTTGTTTGGACTCCTGAATGTTAAGAAAGTTTTGAAGCTTTAAAGGGAATTC
*
85618 TGACAGAAGCTCTTGTATTAGTTCAACCGAAATCTGGCAAGAATTTTGTCGTATTCAGTGACGCT
196 TGACAGAAGCTCCTGTATTAGTTCAACCGAAATCTGGCAAGAATTTTGTCGTATTCAGTGACGCT
* * *
85683 TCCCACAATGGGTTGGGGTGTGTATTAATGCAATAAGGGAAGGTGGTAGCGTATGGC
261 TCCCACAATGAGTTGGGGTGTGTATTAATACAAGAAGGGAAGGTGGTAGCGTATGGC
*
85740 AAGATATTATAGATTGAGAGGTTCCAAAGAATGTATCGAAAGTCCGGAGTTTCCTTGGACTTG-C
1 AAGATATGATAGATTGAGAGGTTCCAAAGAATGTATCGAAAGTCCGGAGTTTCCTTGGACTTGTC
* * * *
85804 ATGTTATTATCGAAGATTCGTTAAGAATTTTTTGATGATATTACTACCTTTAATGAAGCTAATGA
66 -GGTTATTATCGAAGATTCGTTAAGAATTTTTCGATGATAGTACTACCTTTAATGAAGCTAATAA
* *
85869 GAAATAATGTATTGTTTGTTTGGACTCCTGAATGTTAAGAAAGTTTTGAAGCTTTAAAGGGAATT
130 GAAAAAATGTATCGTTTGTTTGGACTCCTGAATGTTAAGAAAGTTTTGAAGCTTTAAAGGGAATT
* * *
85934 CTGATAGAAGCTCCTGTATTGGTTCAACCGAAATCTGGCAAGAATTTTGTCGTATTCAGTGACGT
195 CTGACAGAAGCTCCTGTATTAGTTCAACCGAAATCTGGCAAGAATTTTGTCGTATTCAGTGACGC
85999 TTCCCACAATGAGTTGGGGTGTGTATTAATACAAGAAGGGAAGGTGGTAGCGTATG
260 TTCCCACAATGAGTTGGGGTGTGTATTAATACAAGAAGGGAAGGTGGTAGCGTATG
86055 CATCGAGACA
Statistics
Matches: 295, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
316 1 0.00
317 294 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (317 bp):
AAGATATGATAGATTGAGAGGTTCCAAAGAATGTATCGAAAGTCCGGAGTTTCCTTGGACTTGTC
GGTTATTATCGAAGATTCGTTAAGAATTTTTCGATGATAGTACTACCTTTAATGAAGCTAATAAG
AAAAAATGTATCGTTTGTTTGGACTCCTGAATGTTAAGAAAGTTTTGAAGCTTTAAAGGGAATTC
TGACAGAAGCTCCTGTATTAGTTCAACCGAAATCTGGCAAGAATTTTGTCGTATTCAGTGACGCT
TCCCACAATGAGTTGGGGTGTGTATTAATACAAGAAGGGAAGGTGGTAGCGTATGGC
Found at i:88706 original size:65 final size:66
Alignment explanation
Indices: 88599--88749 Score: 171
Period size: 65 Copynumber: 2.3 Consensus size: 66
88589 AAGAGGTACT
* * * * * * * * **
88599 GATACCCTCTTAAATGAAAAGAATCACACAATGTAGTGAGGGTACCGATACC-CCAGTTGTGTAT
1 GATACCCCCTTAAACGAAAAAAATAACAAAATGCAGTAAGGGTACCGATACCTCAAGGGGTGTAT
88663 C
66 C
*
88664 GATACCCCCTTGAACGAAAAAAATAACAAAATGCAGTAAGGGTACCGATACCTCAAGGGGTGTAT
1 GATACCCCCTTAAACGAAAAAAATAACAAAATGCAGTAAGGGTACCGATACCTCAAGGGGTGTAT
88729 C
66 C
*
88730 GATACCTCCC-TAAAGGAAAA
1 GATACC-CCCTTAAACGAAAA
88750 TTTTAATATT
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
65 44 0.62
66 24 0.34
67 3 0.04
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (66 bp):
GATACCCCCTTAAACGAAAAAAATAACAAAATGCAGTAAGGGTACCGATACCTCAAGGGGTGTAT
C
Found at i:90300 original size:2 final size:2
Alignment explanation
Indices: 90293--90340 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
90283 ACCAAACCAA
90293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90335 AT AT AT
1 AT AT AT
90341 TAAGTTCAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92332 original size:23 final size:22
Alignment explanation
Indices: 92305--92385 Score: 74
Period size: 23 Copynumber: 3.6 Consensus size: 22
92295 CATGGCAGTG
92305 TGCATCGATGCACATTCAAGGCA
1 TGCATCGATGCACATTCAAGG-A
* * * * *
92328 TGCATTGGTGTACCTTCATGG-
1 TGCATCGATGCACATTCAAGGA
*
92349 TGTATCGATGCACATTCAAATGGA
1 TGCATCGATGCACATTC-AA-GGA
92373 TGCATCGATGCAC
1 TGCATCGATGCAC
92386 TGTTAAGTGT
Statistics
Matches: 43, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
21 12 0.28
22 1 0.02
23 18 0.42
24 12 0.28
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGA
Found at i:96249 original size:22 final size:21
Alignment explanation
Indices: 96207--96246 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
96197 GAGTTTATTT
96207 TCATTTTTCAATTTTAAAACA
1 TCATTTTTCAATTTTAAAACA
96228 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
96247 ACAATTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:98139 original size:21 final size:21
Alignment explanation
Indices: 98113--98154 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
98103 AACCGTTGGA
98113 CCCTTAGTGCATCGGTGCACT
1 CCCTTAGTGCATCGGTGCACT
98134 CCCTTAGTGCATCGGTGCACT
1 CCCTTAGTGCATCGGTGCACT
98155 GAGAGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.33, G:0.24, T:0.29
Consensus pattern (21 bp):
CCCTTAGTGCATCGGTGCACT
Found at i:98242 original size:64 final size:63
Alignment explanation
Indices: 98165--98368 Score: 218
Period size: 65 Copynumber: 3.2 Consensus size: 63
98155 GAGAGTTCAC
*
98165 CGATGCATAAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATAGTTGGTGCAT
1 CGATGCATCAAATGCATTCGATGTTTCAAAATA-CCTGAGTGCATCGATGCATAGTTGGTGCAT
*
98229 CGATGCATCAAATGCATTCGATGTTTTCATAAA-ACTCTGAGTGCATCGATGCATAGTAT-GTGT
1 CGATGCATCAAATGCATTCGATG-TTTCA-AAATAC-CTGAGTGCATCGATGCATAGT-TGGTGC
98292 AT
62 AT
* * * * * *
98294 TGATGAATGAAATGCATTCGATG-TTCAATTTATTCCAT-AGTGCATCGATGCATGGATTGGTGC
1 CGATGCATCAAATGCATTCGATGTTTCAA--AATACC-TGAGTGCATCGATGCATAG-TTGGTGC
98357 AT
62 AT
*
98359 CGGTGCATCA
1 CGATGCATCA
98369 CTTTGAAAAA
Statistics
Matches: 117, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 42 0.36
65 66 0.56
66 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (63 bp):
CGATGCATCAAATGCATTCGATGTTTCAAAATACCTGAGTGCATCGATGCATAGTTGGTGCAT
Found at i:100009 original size:16 final size:15
Alignment explanation
Indices: 99988--100021 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
99978 TTCTCATGTC
*
99988 TTTTTTCTATTTTCTT
1 TTTTTTCT-GTTTCTT
100004 TTTTTTCTGTTTCTT
1 TTTTTTCTGTTTCTT
100019 TTT
1 TTT
100022 CAAACCGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTTCTGTTTCTT
Found at i:101823 original size:5 final size:5
Alignment explanation
Indices: 101813--101852 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
101803 TGCTTAACCG
*
101813 AAATA AAATA AAATA AAATAA AAATA CAATA AAATTA AAA
1 AAATA AAATA AAATA AAAT-A AAATA AAATA AAA-TA AAA
101853 ATAATGGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
5 21 0.68
6 10 0.32
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:101838 original size:16 final size:16
Alignment explanation
Indices: 101813--101856 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
101803 TGCTTAACCG
101813 AAAT-AAAATAAAATA
1 AAATAAAAATAAAATA
*
101828 AAATAAAAATACAATA
1 AAATAAAAATAAAATA
101844 AAATTAAAAATAA
1 AAA-TAAAAATAA
101857 TGGGTTGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 4 0.16
16 13 0.52
17 8 0.32
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAAAATAAAATA
Found at i:109305 original size:19 final size:19
Alignment explanation
Indices: 109281--109320 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
109271 TAAATAAGCT
109281 AAATAAATTAAATTTATTA
1 AAATAAATTAAATTTATTA
* *
109300 AAATAATTTAATTTTATTA
1 AAATAAATTAAATTTATTA
109319 AA
1 AA
109321 CATTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATAAATTAAATTTATTA
Found at i:109327 original size:18 final size:18
Alignment explanation
Indices: 109288--109329 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
109278 GCTAAATAAA
109288 TTAAATTTATTAAAATAAT
1 TTAAATTTATTAAAAT-AT
*
109307 TTAATTTTATTAAACAT-T
1 TTAAATTTATTAAA-ATAT
109325 TTAAA
1 TTAAA
109330 ATATATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 5 0.25
19 13 0.65
20 2 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAATTTATTAAAATAT
Found at i:114474 original size:34 final size:35
Alignment explanation
Indices: 114398--114526 Score: 109
Period size: 38 Copynumber: 3.6 Consensus size: 35
114388 TATTTTAGGG
* * *
114398 ACCAAAGATGAAATTCCCATATGCAAAGTTGGTCACCT
1 ACCAAAGATGAATTTTCCA-AT--AAAGTTGGCCACCT
*
114436 ACCAAAGATGAATTTTCCAAT-AAGTTGGCCACCA
1 ACCAAAGATGAATTTTCCAATAAAGTTGGCCACCT
* * * *
114470 ACC-AATATGAAATTCCCATGTGCAAAGTTGGCCACCT
1 ACCAAAGATGAATTTTCCA-AT--AAAGTTGGCCACCT
*
114507 ACCAAAGATAAATTTTCCAA
1 ACCAAAGATGAATTTTCCAA
114527 CTTGCCAAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
33 12 0.17
34 15 0.21
37 17 0.24
38 28 0.39
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (35 bp):
ACCAAAGATGAATTTTCCAATAAAGTTGGCCACCT
Found at i:114498 original size:37 final size:37
Alignment explanation
Indices: 114402--114520 Score: 131
Period size: 37 Copynumber: 3.3 Consensus size: 37
114392 TTAGGGACCA
*
114402 AAGATGAAATTCCCATATGCAAAGTTGGTCACCTACC
1 AAGATGAAATTCCCATATGCAAAGTTGGCCACCTACC
* * *
114439 AAAGATGAATTTTCCA-AT---AAGTTGGCCACCAACC
1 -AAGATGAAATTCCCATATGCAAAGTTGGCCACCTACC
* *
114473 AATATGAAATTCCCATGTGCAAAGTTGGCCACCTACC
1 AAGATGAAATTCCCATATGCAAAGTTGGCCACCTACC
114510 AAAGAT-AAATT
1 -AAGATGAAATT
114521 TTCCAACTTG
Statistics
Matches: 66, Mismatches: 10, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
33 12 0.18
34 15 0.23
37 22 0.33
38 17 0.26
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (37 bp):
AAGATGAAATTCCCATATGCAAAGTTGGCCACCTACC
Found at i:119240 original size:33 final size:34
Alignment explanation
Indices: 119181--119317 Score: 170
Period size: 33 Copynumber: 4.0 Consensus size: 34
119171 CCCATATACA
* *
119181 AAGTTGGTCACCTACCAAAGATGAATTTTCCAAT
1 AAGTTGGCCACCAACCAAAGATGAATTTTCCAAT
119215 AAGTTGGCCACCAACC-AAGATGAATTTTCCAAT
1 AAGTTGGCCACCAACCAAAGATGAATTTTCCAAT
* *
119248 AAGTTGGCCACCAACC-AAGATGAAATTTCCATGT
1 AAGTTGGCCACCAACCAAAGATGAATTTTCCA-AT
* *
119282 GCAAAGTTGGCCACCTACCAAAGATAAATTTTCCAA
1 ---AAGTTGGCCACCAACCAAAGATGAATTTTCCAA
119318 CTTGCCAAAT
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
33 47 0.52
34 15 0.17
37 15 0.17
38 13 0.14
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (34 bp):
AAGTTGGCCACCAACCAAAGATGAATTTTCCAAT
Found at i:119289 original size:37 final size:34
Alignment explanation
Indices: 119155--119317 Score: 161
Period size: 33 Copynumber: 4.6 Consensus size: 34
119145 ATATTTTATG
* *
119155 AACCAAAGATGAAATTCCCATATACAAAGTTGGTCACC
1 AACCAAAGATGAAATTTCCA-AT---AAGTTGGCCACC
* *
119193 TACCAAAGATGAATTTTCCAATAAGTTGGCCACC
1 AACCAAAGATGAAATTTCCAATAAGTTGGCCACC
*
119227 AACC-AAGATGAATTTTCCAATAAGTTGGCCACC
1 AACCAAAGATGAAATTTCCAATAAGTTGGCCACC
*
119260 AACC-AAGATGAAATTTCCATGTGCAAAGTTGGCCACC
1 AACCAAAGATGAAATTTCCA-AT---AAGTTGGCCACC
*
119297 TACCAAAGAT-AAATTTTCCAA
1 AACCAAAGATGAAA-TTTCCAA
119318 CTTGCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
33 47 0.43
34 15 0.14
37 20 0.18
38 28 0.25
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (34 bp):
AACCAAAGATGAAATTTCCAATAAGTTGGCCACC
Found at i:121656 original size:18 final size:19
Alignment explanation
Indices: 121633--121676 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
121623 CAGTAATCAT
121633 ATTCT-CTGATAATCTTAC
1 ATTCTACTGATAATCTTAC
*
121651 ATTCTCACTGATAATGTTAC
1 ATTCT-ACTGATAATCTTAC
121671 ATTCTA
1 ATTCTA
121677 TGAACCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 1 0.04
20 17 0.74
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (19 bp):
ATTCTACTGATAATCTTAC
Found at i:121663 original size:20 final size:20
Alignment explanation
Indices: 121638--121675 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
121628 ATCATATTCT
121638 CTGATAATCTTACATTCTCA
1 CTGATAATCTTACATTCTCA
*
121658 CTGATAATGTTACATTCT
1 CTGATAATCTTACATTCT
121676 ATGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (20 bp):
CTGATAATCTTACATTCTCA
Found at i:123276 original size:27 final size:27
Alignment explanation
Indices: 123246--123303 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
123236 GAAAATACAC
* *
123246 ATATAAGTAAAATA-ATCATATATATTA
1 ATAT-AGTAAAATATACCATAAATATTA
**
123273 ATATTTTAAAATATACCATAAATATTA
1 ATATAGTAAAATATACCATAAATATTA
123300 ATAT
1 ATAT
123304 TCTTCTGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (27 bp):
ATATAGTAAAATATACCATAAATATTA
Found at i:123304 original size:27 final size:26
Alignment explanation
Indices: 123253--123304 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
123243 CACATATAAG
* *
123253 TAAAATAATCATATATATTAATATTT
1 TAAAATAACCATAAATATTAATATTT
123279 TAAAATATACCATAAATATTAATATT
1 TAAAATA-ACCATAAATATTAATATT
123305 CTTCTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TAAAATAACCATAAATATTAATATTT
Found at i:124182 original size:78 final size:78
Alignment explanation
Indices: 124073--124766 Score: 425
Period size: 78 Copynumber: 8.9 Consensus size: 78
124063 GTCCTTCCGG
* * *
124073 TCCT-CCTTCTAACGAGTTCGTT-GTGAAGAGACAAGTACCGAGTGGACCAAATCCTCTTCACAG
1 TCCTACCTT-TAATGAGTTC-TTCGTGAAGAGACAAGTACCGAGTGGACCAGATCCTCTTCACAA
* *
124136 TAAATCTCTCAGTCC
64 TAAACCTCTCAGCCC
* * * * * * *
124151 TCTTGCCTCTAAAT-AGTTCTTCGTGAAGAGACTA--ACACTAGGAGGACTAGATCCTCTTCACA
1 TCCTACCT-TTAATGAGTTCTTCGTGAAGAGACAAGTAC-CGA-GTGGACCAGATCCTCTTCACA
*
124213 ACAAACCTCTCAGCCC
63 ATAAACCTCTCAGCCC
* * * * * * * *** * * *
124229 TCATGCATCTAATGAGTT-TGTTGTGAAAAGACTAA-CACCTG-GAAAACTACATCCTCTTCATA
1 TCCTACCTTTAATGAGTTCT-TCGTGAAGAGAC-AAGTACC-GAGTGGACCAGATCCTCTTCACA
** * *
124291 ATACTCTTCTC-GACTC
63 ATAAACCTCTCAG-CCC
* * *
124307 TCCTATCTTTAATGAGTTCGTT-GTTAAGGGACAAGTACCGAGTGGACCAGATCCT-TTGCACAA
1 TCCTACCTTTAATGAGTTC-TTCGTGAAGAGACAAGTACCGAGTGGACCAGATCCTCTT-CACAA
124370 TAAACCTCTCAGCCC
64 TAAACCTCTCAGCCC
* * ** * * * * ** *
124385 TCATACCTTTAATGAGTTCGTCGTGAAGAGACAAACAAC-AGGAGGACTAGATCATCTTCGTAAC
1 TCCTACCTTTAATGAGTTCTTCGTGAAGAGACAAGTACCGA-GTGGACCAGATCCTCTTCACAAT
**
124449 ACTCCTCTC-GACCC
65 AAACCTCTCAG-CCC
* * * * * *
124463 TCGTGCCTTTAATGAGTTTTTCATTAAGAGACAAGTACCGAGTGGATCAGATCCTCTTCACAATA
1 TCCTACCTTTAATGAGTTCTTCGTGAAGAGACAAGTACCGAGTGGACCAGATCCTCTTCACAATA
* * *
124528 TACCTCTCAGTCA
66 AACCTCTCAGCCC
* * ** * * *
124541 TCTTACCTCTAATGAGTT-TGTCGTGAAGAGACAAACACC-ACGAGGACCAAATCCTCTTCATAA
1 TCCTACCTTTAATGAGTTCT-TCGTGAAGAGACAAGTACCGA-GTGGACCAGATCCTCTTCACAA
** **
124604 TATTCCTCTGGGCCC
64 TAAACCTCTCAGCCC
* * * * * *
124619 TCCTGCCTTTAATGA-TTTTGTCATTAAGAGACAAATATCGAGTGGACCAGATCCTCTTCACAAT
1 TCCTACCTTTAATGAGTTCT-TCGTGAAGAGACAAGTACCGAGTGGACCAGATCCTCTTCACAAT
124683 AAACCTCTCAG-CC
65 AAACCTCTCAGCCC
* * ** *
124696 TCCTACCTCTAATGAGTTCATCGTGAAGAGACAAGTACCGAGTGGACCAGAT-CGATACACAATA
1 TCCTACCTTTAATGAGTTCTTCGTGAAGAGACAAGTACCGAGTGGACCAGATCCTCTTCACAATA
124760 AACCTCT
66 AACCTCT
124767 TAGTCTTTCT
Statistics
Matches: 463, Mismatches: 125, Indels: 58
0.72 0.19 0.09
Matches are distributed among these distances:
76 18 0.04
77 64 0.14
78 363 0.78
79 14 0.03
80 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (78 bp):
TCCTACCTTTAATGAGTTCTTCGTGAAGAGACAAGTACCGAGTGGACCAGATCCTCTTCACAATA
AACCTCTCAGCCC
Found at i:124387 original size:156 final size:155
Alignment explanation
Indices: 124194--124729 Score: 635
Period size: 156 Copynumber: 3.4 Consensus size: 155
124184 AACACTAGGA
* * * * * *
124194 GGACTAGATCCTCTTCACAACAAACCTCTCAGCCCTCATGCATCTAATGAGTTTGTTGTGAAAAG
1 GGACCAGATCCTCTTCACAATAAACCTCTCAGCCCTCATACCTCTAATGAGTTTGTCGTGAAGAG
* * ** * * * **
124259 ACTAACACCTGGAAAACTACATCCTCTTCATAATACTCTTCTCGACTCTCCTATCTTTAATGAGT
66 ACAAACACCAGGAGGACTAAATCCTCTTCATAATACTCCTCTCGACCCTCCTGCCTTTAATGAGT
* *
124324 TCGTTGTTAAGGGACAAGTACCGAGT
131 T-GTTATTAAGAGACAAGTACCGAGT
* *
124350 GGACCAGATCCT-TTGCACAATAAACCTCTCAGCCCTCATACCTTTAATGAGTTCGTCGTGAAGA
1 GGACCAGATCCTCTT-CACAATAAACCTCTCAGCCCTCATACCTCTAATGAGTTTGTCGTGAAGA
* * * * * *
124414 GACAAACAACAGGAGGACTAGATCATCTTCGTAACACTCCTCTCGACCCTCGTGCCTTTAATGAG
65 GACAAACACCAGGAGGACTAAATCCTCTTCATAATACTCCTCTCGACCCTCCTGCCTTTAATGAG
*
124479 TTTTTCATTAAGAGACAAGTACCGAGT
130 TTGTT-ATTAAGAGACAAGTACCGAGT
* * * * *
124506 GGATCAGATCCTCTTCACAATATACCTCTCAGTCATCTTACCTCTAATGAGTTTGTCGTGAAGAG
1 GGACCAGATCCTCTTCACAATAAACCTCTCAGCCCTCATACCTCTAATGAGTTTGTCGTGAAGAG
* * * * * *
124571 ACAAACACCACGAGGACCAAATCCTCTTCATAATATTCCTCTGGGCCCTCCTGCCTTTAATGATT
66 ACAAACACCAGGAGGACTAAATCCTCTTCATAATACTCCTCTCGACCCTCCTGCCTTTAATGA-G
* * *
124636 TTGTCATTAAGAGACAAATATCGAGT
130 TTGTTATTAAGAGACAAGTACCGAGT
* **
124662 GGACCAGATCCTCTTCACAATAAACCTCTCAG-CCTCCTACCTCTAATGAGTTCATCGTGAAGAG
1 GGACCAGATCCTCTTCACAATAAACCTCTCAGCCCTCATACCTCTAATGAGTTTGTCGTGAAGAG
124726 ACAA
66 ACAA
124730 GTACCGAGTG
Statistics
Matches: 322, Mismatches: 54, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
155 36 0.11
156 281 0.87
157 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (155 bp):
GGACCAGATCCTCTTCACAATAAACCTCTCAGCCCTCATACCTCTAATGAGTTTGTCGTGAAGAG
ACAAACACCAGGAGGACTAAATCCTCTTCATAATACTCCTCTCGACCCTCCTGCCTTTAATGAGT
TGTTATTAAGAGACAAGTACCGAGT
Found at i:124556 original size:234 final size:233
Alignment explanation
Indices: 124080--124605 Score: 516
Period size: 234 Copynumber: 2.2 Consensus size: 233
124070 CGGTCCTCCT
* * *
124080 TCTAACGAGTTCGTTGTGAAGAGACAAGTACCGAGTGGACCAAATCCTCTTCACAGTAAATCTCT
1 TCTAATGAGTTCGTTGTGAAGAGACAAGTACCGAGTGGACCAAATCCTCTTCACAATAAACCTCT
* * * * * *
124145 CAGTCCTCTTGCCTCTAAATAGTTCTTCGTGAAGAGACTAACACTAGGAGGACTAGATCCTCTTC
66 CAGCCCTCATACCTCTAAATAGTTCGTCGTGAAGAGACAAACACTAGGAGGACTAGATCATCTTC
*
124210 ACAACAAACCTCTCAGCCCTCATGCATCTAATGAGTTTGTTGTGAAAAGACTAACACCTGGAAAA
131 ACAACAAACCTCTCAGCCCTCATGCATCTAATGAGTTTGTTATGAAAAGACTAACACCTGG-AAA
* * *
124275 CTACATCCTCTTCATAATACTCTTCTCGACTCTCCTATC
195 CTACATCCTCTTCACAATACTCCTCTCGACTCTCCTACC
* * * *
124314 TTTAATGAGTTCGTTGTTAAGGGACAAGTACCGAGTGGACCAGATCCT-TTGCACAATAAACCTC
1 TCTAATGAGTTCGTTGTGAAGAGACAAGTACCGAGTGGACCAAATCCTCTT-CACAATAAACCTC
*
124378 TCAGCCCTCATACCT-TTAATGAGTTCGTCGTGAAGAGACAAACAAC-AGGAGGACTAGATCATC
65 TCAGCCCTCATACCTCTAAAT-AGTTCGTCGTGAAGAGACAAAC-ACTAGGAGGACTAGATCATC
** ** * * * * * *
124441 TTCGTAACACTCCTCTC-GACCCTCGTGCCTTTAATGAGTTT-TTCATTAAGAGAC-AAGTACCG
128 TTCACAACAAACCTCTCAG-CCCTCATGCATCTAATGAGTTTGTT-ATGAAAAGACTAA-CACC-
* * * *
124503 AGTGG-ATC-AGATCCTCTTCACAATA-TACCTCTC-AGTCATCTTACC
189 --TGGAAACTACATCCTCTTCACAATACT-CCTCTCGACTC-TCCTACC
* * ** * *
124548 TCTAATGAGTTTGTCGTGAAGAGACAAACACC-ACGAGGACCAAATCCTCTTCATAATA
1 TCTAATGAGTTCGTTGTGAAGAGACAAGTACCGA-GTGGACCAAATCCTCTTCACAATA
124606 TTCCTCTGGG
Statistics
Matches: 237, Mismatches: 42, Indels: 26
0.78 0.14 0.09
Matches are distributed among these distances:
233 16 0.07
234 212 0.89
235 6 0.03
237 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (233 bp):
TCTAATGAGTTCGTTGTGAAGAGACAAGTACCGAGTGGACCAAATCCTCTTCACAATAAACCTCT
CAGCCCTCATACCTCTAAATAGTTCGTCGTGAAGAGACAAACACTAGGAGGACTAGATCATCTTC
ACAACAAACCTCTCAGCCCTCATGCATCTAATGAGTTTGTTATGAAAAGACTAACACCTGGAAAC
TACATCCTCTTCACAATACTCCTCTCGACTCTCCTACC
Found at i:125017 original size:78 final size:78
Alignment explanation
Indices: 124279--125034 Score: 331
Period size: 78 Copynumber: 9.7 Consensus size: 78
124269 GGAAAACTAC
* * * * * ** * * * *
124279 ATCCTCTTCATAATACTCTTCTC-GACTCTCCTATCTTTAATGAGTTCGTTGTTAAGGGACAAGT
1 ATCCTCTTCATAATAATCCTCTCGGTC-CTCCTAGCTTTAATGATTTAATCGTGAAGAGACAAAT
* *
124343 ACCGAGTGGACCAG
65 ACCGGGAGGACCAG
* * * * * * * ** *
124357 ATCCT-TTGCACAATAAACCTCTCAGCCCTCATACCTTTAATGAGTTCGTCGTGAAGAGACAAAC
1 ATCCTCTT-CATAATAATCCTCTCGGTCCTCCTAGCTTTAATGATTTAATCGTGAAGAGACAAAT
* * *
124421 AACAGGAGGACTAG
65 ACCGGGAGGACCAG
* * * * ** * * * * *
124435 ATCATCTTCGTAACACTCCTCTCGACCCTCGT-GCCTTTAATGAGTTT-TTCATTAAGAGACAAG
1 ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAG-CTTTAATGA-TTTAATCGTGAAGAGACAAA
* * *
124498 TACCGAGTGGATCAG
64 TACCGGGAGGACCAG
* * * * * * *
124513 ATCCTCTTCACAAT-ATACCTCTCAGTCATCTTACCTCTAATGAGTTT-GTCGTGAAGAGACAAA
1 ATCCTCTTCATAATAAT-CCTCTCGGTCCTCCTAGCTTTAATGA-TTTAATCGTGAAGAGACAAA
* ** *
124576 CACCACGAGGACCAA
64 TACCGGGAGGACCAG
* * * ** * *
124591 ATCCTCTTCATAATATTCCTCTGGGCCCTCCT-GCCTTTAATGATTTTGTCATTAAGAGACAAAT
1 ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAG-CTTTAATGATTTAATCGTGAAGAGACAAAT
* * *
124655 ATCGAGTGGACCAG
65 ACCGGGAGGACCAG
* * * * * * * *
124669 ATCCTCTTCACAATAAACCTCTCAG-CCTCCTACCTCTAATGAGTTCATCGTGAAGAGACAAGTA
1 ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAGCTTTAATGATTTAATCGTGAAGAGACAAATA
* *
124733 CCGAGTGGACCAG
66 CCGGGAGGACCAG
** * * * ** * * * * * *
124746 AT-CGATACACAATAAACCTCTTAGTCTTTCT-GCCTCTAATGAATTCATCGTGAAAAGACAAAC
1 ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAG-CTTTAATGATTTAATCGTGAAGAGACAAA-
* *
124809 T-CCGGAAGGACCAT
64 TACCGGGAGGACCAG
* * * * * *
124823 ATTCTCTTCATAATACTCCTCTCGGTTCTCCTA-CCTTAATAATTTCAAT-GTGAAGAGACAAAC
1 ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAGCTTTAATGATTT-AATCGTGAAGAGACAAAT
* *
124886 ACCGGGAGGACTAA
65 ACCGGGAGGACCAG
* * * * * *
124900 ATCCTTTTCATAATACTCCTTTC-ATCCCTCCCA-CTTTTAATGATTTAAGT-ATGAAGAGACAA
1 ATCCTCTTCATAATAATCCTCTCGGT-CCTCCTAGC-TTTAATGATTTAA-TCGTGAAGAGACAA
124962 ATACCGGGAGGACCAG
63 ATACCGGGAGGACCAG
* * * *
124978 ATCCTCTTCATAATAGTCCTCTCGGTCCTTCTAGCTTTAACGAGTTTACT-GTGAAGA
1 ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAGCTTTAATGA-TTTAATCGTGAAGA
125035 AATCAACACA
Statistics
Matches: 506, Mismatches: 148, Indels: 48
0.72 0.21 0.07
Matches are distributed among these distances:
76 19 0.04
77 149 0.29
78 325 0.64
79 13 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (78 bp):
ATCCTCTTCATAATAATCCTCTCGGTCCTCCTAGCTTTAATGATTTAATCGTGAAGAGACAAATA
CCGGGAGGACCAG
Found at i:126035 original size:22 final size:22
Alignment explanation
Indices: 125992--126035 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
125982 AAGTTAAAAT
*
125992 TTTTAAATTTTGATAATTATTA
1 TTTTAAATTTTGATAATAATTA
*
126014 TTTTAAATATTTTA-AATAATTA
1 TTTTAAAT-TTTGATAATAATTA
126036 AATTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTAAATTTTGATAATAATTA
Found at i:127058 original size:23 final size:23
Alignment explanation
Indices: 127032--127094 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
127022 AATGATTCAG
* * *
127032 TGTTGACTGATTCGGCAAAATAA
1 TGTTGAATGATTCAGCAAAACAA
* *
127055 TGTTGAATGATTTAGCAAAACAG
1 TGTTGAATGATTCAGCAAAACAA
127078 TGTTGAATGATTCAGCA
1 TGTTGAATGATTCAGCA
127095 CTGAAGTACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (23 bp):
TGTTGAATGATTCAGCAAAACAA
Found at i:127192 original size:16 final size:16
Alignment explanation
Indices: 127171--127213 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
127161 ACAAAGCCTC
127171 TGAATCATTCAGCATT
1 TGAATCATTCAGCATT
127187 TGAATCATTCAGCATT
1 TGAATCATTCAGCATT
127203 TGAATCATTCA
1 TGAATCATTCA
127214 ACGCTTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (16 bp):
TGAATCATTCAGCATT
Found at i:127474 original size:78 final size:78
Alignment explanation
Indices: 127374--128743 Score: 935
Period size: 78 Copynumber: 17.6 Consensus size: 78
127364 TCCTCCTCCT
* * * * * * * *
127374 TCTAATGAGTTAATCGTAAAGAGATAAATACCGTGAGGACTAGATCATATTCACAATAAATCTGT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
*
127439 TAGTCCTCTTGTC
66 TAGCCCTCTTGTC
* * * * * * * * **
127452 TTTAATGAGTTCGTCATGAAGAGACAAACATCGGGTGGACCAGATCCCATGCACAATAAATAT-T
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
*** *
127516 TCAGTTATCCTGTC
66 T-AGCCCTCTTGTC
* * * ** * * * * *
127530 TCTAATGAGTTCATCGTAAAGAGAAAAATATTGGGAGGACCAGATTCTCTTCACAATAAGCCTTT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
* *
127595 TAACCCTCATGTC
66 TAGCCCTCTTGTC
* * * * * * **
127608 TCTAATGAATTCATCATGAAGAGACAAACATCGAGAGGA-TCAAATCCTATTCATAATAAATTTC
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACT-AGATCCTATTCACAATAAACCTC
* * *
127672 TTAGTCATCTT-AC
65 TTAGCCCTCTTGTC
* * * * * * *
127685 TTTTAATGAGATT-TTCGTGAAGAGACAAACACCAGGAGGACCATATCTTATTCAC----AACTT
1 -TCTAATGAG-TTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCT
* *
127745 TTTAGCCCTCTTGCC
64 CTTAGCCCTCTTGTC
** * * * * * * *
127760 TCTAATGAGTTTGTCGTGAATAGATAAACATCGAGAGGATTGGATCTTATTCACAATAAACCTCT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
* *
127825 TAGCCCTCATGCC
66 TAGCCCTCTTGTC
* * * * * * * *
127838 TCTAATGAGTTCATTGTGAAGAGACTAACTCCAGAAGGATCT-TATTCTCTTCACAATAAACCTC
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGA-CTAGATCCTATTCACAATAAACCTC
* *
127902 TCAGCCCTCTTGCC
65 TTAGCCCTCTTGTC
* * * * * * *
127916 GCTAATGAGTTCTTCGTGAATAGA-ATAACATCGGTAGGA-TCAAATCCTCTTCACAATAAACCT
1 TCTAATGAGTTCATCGTGAAGAGACA-AACACCGGGAGGACT-AGATCCTATTCACAATAAACCT
*
127979 -TCTAGCCCTCATGTC
64 CT-TAGCCCTCTTGTC
* ** ** * *
127994 TCTAATGAGTTCATCGTGAAGAGACTAACACTAGGAGGGTTAGATCCTCTTTACAATAAACCTCT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
* * *
128059 AAGCCCTTTTGCC
66 TAGCCCTCTTGTC
* * * *
128072 TCTAATGAGTTCGTCGTGAAAAGAAAAACACCGAGAGGACTAGATCCTATTCACAATAAACCTCT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
* *
128137 CAGCCCTCATGTC
66 TAGCCCTCTTGTC
* * * * * * * * *
128150 TATAATGAGTTCTTCGTGAAGAAACAAACGCCAGGAGGACAAGATCCTATTCATAGTAAAACT-T
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
* * * *
128214 TCAACACTTTTTTC
66 T-AGCCCTCTTGTC
* * * * * *
128228 TTTAATGAGTTCGTCGTGAAAAGACAAACATCGTGAGGA-TCAGATCCTATTCA-AGTAAACCTC
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACT-AGATCCTATTCACAATAAACCTC
* *
128291 TCCA-CCCTCTTGCC
65 T-TAGCCCTCTTGTC
* ** * *
128305 TTTAATGAGTTCGCCGTGAAGAGATAAACA-CGAGGAGGA-TCAGATCCTATTTACAATAAACCT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCG-GGAGGACT-AGATCCTATTCACAATAAACCT
* * *
128368 ATCAGTCCTCTTGTC
64 CTTAGCCCTCTTGTC
* * ** * *
128383 TCTAATGAGTTCATCGTGAAGAAACAAACATCGGGAGGACCGGATCCTATTCACAATAAACATCA
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
* * * *
128448 CAGTCTTCTTGCC
66 TAGCCCTCTTGTC
* * *** * * * * *
128461 TCTAATGAGTTCGTTGTGAAGAGACAAACACCAAAAGGA-TCCGATCTTAATAACAATAAACCTT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACT-AGATCCTATTCACAATAAACCTC
*
128525 TTAGCCCTCTTGCC
65 TTAGCCCTCTTGTC
* ** *
128539 TCTAATGAGTTCATCGTGAAGAGACAAATACCATGAGGA-TCAGATCCTATTCATAATAAACCTC
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACT-AGATCCTATTCACAATAAACCTC
* *
128603 TAAACCCTCTTGTC
65 TTAGCCCTCTTGTC
* * * * *
128617 TCTAATGAGTTCATCGTGAAGAGACCAAACATCGGGAGGACCAGATCCTCTTCATAATAAGCCTC
1 TCTAATGAGTTCATCGTGAAGAGA-CAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTC
* * * *
128682 TCAACCCTCCTATC
65 TTAGCCCTCTTGTC
** * *
128696 TCTAATGAGTTCGCCGTGAAGAGATAAACACCGGGAGGACCAGATCCT
1 TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCT
128744 CTTTATAATA
Statistics
Matches: 1008, Mismatches: 252, Indels: 64
0.76 0.19 0.05
Matches are distributed among these distances:
73 2 0.00
74 53 0.05
75 1 0.00
76 3 0.00
77 66 0.07
78 809 0.80
79 74 0.07
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (78 bp):
TCTAATGAGTTCATCGTGAAGAGACAAACACCGGGAGGACTAGATCCTATTCACAATAAACCTCT
TAGCCCTCTTGTC
Found at i:128390 original size:389 final size:390
Alignment explanation
Indices: 127887--128797 Score: 1018
Period size: 389 Copynumber: 2.3 Consensus size: 390
127877 TCTTATTCTC
* * ** * *
127887 TTCACAATAAACCTCT-CAGCCCTCTTGCCGCTAATGAGTTCTTCGTGAATAGA-ATAACATCGG
1 TTCATAATAAACCTCTCCA-CCCTCTTGCCTCTAATGAGTTCGCCGTGAAGAGATA-AACACCGG
* * * * *
127950 TAGGATCAAATCCTCTTCACAATAAACCTTCTAGCCCTCATGTCTCTAATGAGTTCATCGTGAAG
64 GAGGATCAGATCCTCTTTACAATAAACCTTC-AGTCCTCTTGTCTCTAATGAGTTCATCGTGAAG
* *** * * *
128015 AGACTAACA-CTAGGAGGGTTAGATCCTCTTTACAATAAACCTCTA-AGCCCTT-TTGCCTCTAA
128 AGACAAACATC-AGGAGGACCAGATCCTATTCACAATAAACATC-ACAG-CCTTCTTGCCTCTAA
* * * *
128077 TGAGTTCGTCGTGAAAAGAAAAACACCGAGAGGA-CTAGATCCTATTCACAATAAACCTCTCAGC
190 TGAGTTCGTCGTGAAAAGAAAAACACCAAAAGGATC-AGATCCTAATAACAATAAACCTCTCAGC
* * *
128141 CCTCATGTCTATAATGAGTTCTTCGTGAAGAAACAAACGCCAGGAGGA-CAAGATCCTATTCATA
254 CCTCATGCCTATAATGAGTTCATCGTGAAGAAACAAACACCAGGAGGATC-AGATCCTATTCATA
* * * * * * * * *
128205 GTAAAACTTTCAACACTTTTTTCTTTAATGAGTTCGTCGTGAAAAGA-CAAACATCGTGAGGATC
318 ATAAAACTCTAAACACTCTTGTCTCTAATGAGTTCATCGTGAAAAGACCAAACATCGGGAGGACC
128269 AGATCCTA
383 AGATCCTA
* *
128277 TTCA-AGTAAACCTCTCCACCCTCTTGCCTTTAATGAGTTCGCCGTGAAGAGATAAACA-CGAGG
1 TTCATAATAAACCTCTCCACCCTCTTGCCTCTAATGAGTTCGCCGTGAAGAGATAAACACCG-GG
*
128340 AGGATCAGATCCTATTTACAATAAACCTATCAGTCCTCTTGTCTCTAATGAGTTCATCGTGAAGA
65 AGGATCAGATCCTCTTTACAATAAACCT-TCAGTCCTCTTGTCTCTAATGAGTTCATCGTGAAGA
* * * *
128405 AACAAACATCGGGAGGACCGGATCCTATTCACAATAAACATCACAGTCTTCTTGCCTCTAATGAG
129 GACAAACATCAGGAGGACCAGATCCTATTCACAATAAACATCACAGCCTTCTTGCCTCTAATGAG
* * * * * * * *
128470 TTCGTTGTGAAGAGACAAACACCAAAAGGATCCGATCTTAATAACAATAAACCTTTTAGCCCTCT
194 TTCGTCGTGAAAAGAAAAACACCAAAAGGATCAGATCCTAATAACAATAAACCTCTCAGCCCTCA
* * * * *
128535 TGCCTCTAATGAGTTCATCGTGAAGAGACAAATACCATGAGGATCAGATCCTATTCATAATAAAC
259 TGCCTATAATGAGTTCATCGTGAAGAAACAAACACCAGGAGGATCAGATCCTATTCATAATAAAA
* *
128600 CTCTAAACCCTCTTGTCTCTAATGAGTTCATCGTGAAGAGACCAAACATCGGGAGGACCAGATCC
324 CTCTAAACACTCTTGTCTCTAATGAGTTCATCGTGAAAAGACCAAACATCGGGAGGACCAGATCC
*
128665 TC
389 TA
* * * **
128667 TTCATAATAAGCCTCTCAACCCTCCTATCTCTAATGAGTTCGCCGTGAAGAGATAAACACCGGGA
1 TTCATAATAAACCTCTCCACCCTCTTGCCTCTAATGAGTTCGCCGTGAAGAGATAAACACCGGGA
* * ** *
128732 GGACCAGATCCTCTTTATAATACTCCTGTCAGTCCT-TCTGTCTTTAATGAGTTCAAT-GTGAAG
66 GGATCAGATCCTCTTTACAATAAACCT-TCAGTCCTCT-TGTCTCTAATGAGTTC-ATCGTGAAG
128795 AGA
128 AGA
128798 TAAATACTAA
Statistics
Matches: 437, Mismatches: 70, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
388 6 0.01
389 285 0.65
390 39 0.09
391 103 0.24
392 4 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (390 bp):
TTCATAATAAACCTCTCCACCCTCTTGCCTCTAATGAGTTCGCCGTGAAGAGATAAACACCGGGA
GGATCAGATCCTCTTTACAATAAACCTTCAGTCCTCTTGTCTCTAATGAGTTCATCGTGAAGAGA
CAAACATCAGGAGGACCAGATCCTATTCACAATAAACATCACAGCCTTCTTGCCTCTAATGAGTT
CGTCGTGAAAAGAAAAACACCAAAAGGATCAGATCCTAATAACAATAAACCTCTCAGCCCTCATG
CCTATAATGAGTTCATCGTGAAGAAACAAACACCAGGAGGATCAGATCCTATTCATAATAAAACT
CTAAACACTCTTGTCTCTAATGAGTTCATCGTGAAAAGACCAAACATCGGGAGGACCAGATCCTA
Done.