genome.fa.s8799.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008799.1 Hibiscus syriacus cultivar Beakdansim tig00111949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108279

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3169--3200	15	2.1	15	94	0	55	46	6	18	28	1.73
8498--8530	3	11.0	3	93	0	57	63	0	0	36	0.95
9106--9204	49	2.0	49	96	0	180	35	6	31	27	1.81
13407--13493	35	2.5	34	80	12	97	55	10	8	26	1.61
14072--14112	18	2.3	18	91	0	64	21	14	31	31	1.94
18519--18583	29	2.4	26	75	22	62	63	9	1	26	1.34
19044--19139	39	2.5	37	75	21	90	65	2	0	32	1.04
19044--19139	26	3.7	25	70	13	70	65	2	0	32	1.04
19845--19886	19	2.1	21	82	8	52	57	9	4	28	1.51
19999--20028	14	2.1	14	93	0	51	50	6	0	43	1.28
20114--20157	11	3.8	11	77	11	52	25	22	22	29	1.99
26096--26138	18	2.3	19	96	4	79	74	6	4	13	1.19
26178--26210	15	2.1	17	88	11	52	33	15	6	45	1.70
27806--27845	15	2.7	15	96	0	71	37	17	10	35	1.83
28877--29034	21	7.8	20	71	9	88	38	25	16	19	1.92
28937--29053	20	5.7	20	75	12	78	38	23	17	20	1.93
29021--29230	20	10.5	20	83	5	228	36	25	18	20	1.95
29914--29960	24	2.0	24	87	8	69	25	14	21	38	1.92
32440--32775	33	9.7	34	79	16	297	46	17	22	13	1.83
32454--32775	19	18.4	19	76	19	353	46	17	22	13	1.83
32482--32797	105	3.0	105	98	0	607	46	16	23	13	1.83
32482--32797	52	6.0	52	97	1	596	46	16	23	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32804--32919	53	2.2	53	98	1	225	13	24	18	43	1.86
32822--32919	19	5.4	19	84	13	143	14	22	17	45	1.84
33026--33062	14	2.6	14	91	0	65	45	21	0	32	1.52
35021--35113	33	2.8	33	93	0	159	47	22	20	9	1.79
34984--35118	19	7.6	19	75	16	119	45	24	19	10	1.81
35043--35096	14	3.5	14	75	22	54	44	24	22	9	1.81
35114--35242	19	7.3	19	75	17	125	9	16	28	45	1.78
35114--35205	33	2.8	33	93	3	150	8	17	28	45	1.78
35290--35665	93	4.1	93	99	0	736	46	19	12	22	1.83
37370--37460	14	5.7	14	70	25	65	43	23	24	8	1.81
37363--37477	33	3.5	33	94	3	205	46	20	23	9	1.80
37501--37557	14	3.7	14	79	20	69	8	26	22	42	1.83
37496--37565	33	2.1	33	97	0	131	8	25	20	45	1.79
37541--37618	41	1.9	41	97	0	147	12	25	16	44	1.83
37542--37617	21	3.7	21	83	3	109	11	25	17	46	1.82
37697--37767	33	2.2	33	89	0	106	47	16	22	12	1.80
37949--38003	22	2.5	22	81	0	74	20	16	40	23	1.91
38150--38343	20	9.6	20	82	5	221	19	19	25	35	1.95
38150--38343	60	3.2	60	83	0	253	19	19	25	35	1.95
38330--38412	21	4.0	21	73	6	78	25	16	24	33	1.96
38310--38408	42	2.4	43	77	11	100	21	18	23	37	1.94
39253--39294	23	1.9	23	85	9	61	52	2	7	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44724--44847	62	2.0	62	96	0	230	31	21	13	33	1.92
46473--46504	6	5.3	6	100	0	64	34	0	65	0	0.93
49963--49988	12	2.2	12	100	0	52	34	23	34	7	1.83
53881--54007	49	2.6	49	82	5	148	25	26	23	23	2.00
54482--54559	23	3.4	23	94	0	129	35	26	14	23	1.93
54664--54705	20	2.1	20	90	0	66	61	16	9	11	1.55
57288--57379	18	5.2	18	82	2	87	9	5	42	42	1.61
58084--58220	61	2.2	61	88	0	202	37	9	5	48	1.58
58307--58451	11	13.0	11	64	28	51	45	4	4	45	1.43
58306--58585	18	16.3	18	67	15	146	43	5	5	45	1.48
58277--58483	51	4.0	51	78	14	217	44	4	6	44	1.49
58324--58517	33	5.7	33	81	10	239	43	4	6	45	1.49
58277--58436	86	1.9	84	90	5	259	45	5	6	43	1.51
58306--58535	104	2.2	101	87	3	325	44	4	5	46	1.45
58512--58598	32	2.8	32	82	5	88	41	6	3	48	1.47
58570--58608	13	3.0	13	84	0	51	35	5	5	53	1.45
58595--58649	18	2.8	18	86	10	65	43	5	9	41	1.59
58612--58656	18	2.5	17	86	13	56	46	6	6	40	1.56
58781--58831	11	4.9	10	75	15	50	41	1	7	49	1.43
58764--58833	22	3.2	20	76	13	68	38	1	10	50	1.45
58804--58911	7	16.3	6	74	13	54	46	2	8	42	1.48
58808--58850	15	2.8	15	85	3	50	46	0	9	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58733--58861	44	2.8	48	72	14	117	43	3	8	44	1.50
58826--58915	20	4.5	20	72	9	76	48	3	7	40	1.48
58804--58911	2	49.0	2	68	17	54	46	2	8	42	1.48
58919--58968	26	1.9	26	88	8	75	44	10	6	40	1.63
58947--59028	18	4.2	18	74	19	67	42	7	8	41	1.63
59101--59154	20	2.5	22	85	11	85	46	5	5	42	1.50
59166--59228	24	2.6	24	80	12	67	46	7	4	41	1.54
59223--59250	13	2.2	13	100	0	56	39	0	7	53	1.28
58997--59444	211	2.1	206	82	12	507	43	6	6	42	1.57
59223--59271	22	2.2	22	92	0	80	34	2	8	55	1.41
59223--59266	13	3.7	13	74	22	51	34	0	9	56	1.31
59304--59368	27	2.4	27	81	0	85	49	6	6	38	1.53
59278--59382	2	50.0	2	68	19	54	47	5	3	42	1.45
59435--59482	22	2.2	22	84	0	60	39	6	6	47	1.54
59617--59691	22	3.5	20	78	12	71	46	1	1	50	1.18
59652--59691	11	3.7	11	90	3	64	45	2	0	52	1.14
59598--59686	44	2.0	46	82	8	112	49	2	1	47	1.21
59741--59809	18	4.0	18	83	5	72	44	2	5	46	1.42
59754--59853	2	49.5	2	69	16	55	49	4	3	44	1.36
61089--61155	16	4.4	15	90	5	91	49	0	0	50	1.00
61102--61152	2	26.0	2	96	4	95	49	0	0	50	1.00
65338--65363	10	2.6	10	100	0	52	50	0	19	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66154--66206	24	2.2	24	86	3	72	39	5	24	30	1.78
68305--68350	23	2.0	23	83	8	58	52	6	10	30	1.62
68470--68514	20	2.4	19	85	7	56	44	8	24	22	1.81
69996--70033	19	2.0	19	100	0	76	21	21	15	42	1.89
73928--73957	15	2.0	15	93	0	51	26	16	13	43	1.85
78750--78776	14	1.9	14	100	0	54	14	22	11	51	1.73
84618--84668	23	2.3	23	83	6	70	19	41	19	19	1.91
88005--88060	24	2.3	24	96	0	103	33	17	3	44	1.66
89367--89398	15	2.1	15	100	0	64	28	25	12	34	1.92
91495--91534	22	2.0	21	85	14	57	35	0	2	62	1.09
103554--103598	21	2.1	22	95	4	83	26	20	24	28	1.99

Tables:   1

The End!