genome.fa.s8800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008800.1 Hibiscus syriacus cultivar Beakdansim tig00111950_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198305

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035--2089	16	3.4	16	81	18	69	20	10	5	63	1.46
12583--12899	158	2.0	158	98	0	607	36	14	17	32	1.89
16462--16502	16	2.6	16	96	0	73	53	0	24	21	1.46
19936--20057	45	2.7	45	76	2	111	28	31	5	33	1.81
24396--24551	65	2.4	65	82	12	189	30	17	21	30	1.97
24910--24966	24	2.5	23	81	13	66	24	35	0	40	1.56
27219--27294	23	3.4	23	70	14	77	26	23	25	25	2.00
27285--27333	20	2.5	20	96	0	89	28	20	22	28	1.98
31151--31193	21	2.0	21	82	13	52	34	6	2	55	1.39
33084--33240	65	2.4	64	83	7	176	27	18	24	29	1.98
35269--35567	72	4.2	72	83	3	354	37	12	21	28	1.90
35269--35546	143	1.9	143	86	2	398	36	12	21	28	1.91
38759--38797	21	1.9	20	84	5	51	35	12	17	33	1.88
39990--40092	41	2.5	42	73	19	106	30	14	19	35	1.92
46747--46815	21	3.2	22	67	27	58	24	14	7	53	1.66
46748--46828	42	1.9	43	89	2	128	23	16	8	51	1.71
47632--47838	111	1.9	111	86	0	297	36	18	14	30	1.90
48543--48594	21	2.5	21	100	0	104	28	17	13	40	1.87
57442--57512	31	2.3	32	80	11	85	40	8	18	32	1.80
66755--66831	31	2.5	31	82	2	100	28	31	25	14	1.95
67701--67731	7	4.4	7	100	0	62	25	29	29	16	1.96
67722--67785	22	2.9	22	95	0	110	10	21	46	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67782--67859	9	8.3	9	78	5	75	28	28	26	16	1.97
67788--67860	19	3.9	18	78	10	76	28	28	24	17	1.98
67788--67860	38	1.9	38	83	5	94	28	28	24	17	1.98
73798--73874	31	2.5	31	82	2	100	28	31	25	14	1.95
73751--73874	63	2.0	63	80	6	144	26	28	27	17	1.98
74744--74774	7	4.4	7	100	0	62	25	29	29	16	1.96
74771--74828	5	10.8	5	78	14	62	6	22	51	18	1.70
74764--74828	22	3.0	22	100	0	130	9	23	49	18	1.76
74825--74913	28	3.1	27	85	6	88	30	28	26	14	1.95
74825--74913	9	9.3	9	77	11	88	30	28	26	14	1.95
74831--74913	19	4.3	19	83	8	89	31	28	25	14	1.95
74850--74913	30	2.2	28	94	5	110	31	28	26	14	1.95
74876--74914	21	1.9	21	94	5	71	33	25	25	15	1.95
79246--79314	27	2.6	27	70	21	63	27	10	18	43	1.82
80208--80249	14	2.9	14	89	3	57	26	21	28	23	1.99
84784--84990	92	2.2	92	88	1	308	32	8	20	38	1.83
88720--88774	25	2.5	22	82	14	60	58	10	5	25	1.53
88707--88768	25	2.5	25	89	0	97	56	9	4	29	1.52
91249--91365	37	3.2	37	71	7	121	37	6	19	35	1.79
91151--91394	73	3.3	73	84	6	289	37	10	21	31	1.87
91240--91352	36	3.1	35	68	7	100	38	7	23	30	1.83
91273--91390	37	3.2	37	72	4	123	36	10	22	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91582--91773	52	3.6	52	79	6	204	38	17	9	33	1.83
91787--91987	108	1.8	110	88	2	262	42	14	8	33	1.77
91613--91991	55	7.0	54	81	7	306	40	15	9	35	1.79
92167--92326	2	80.0	2	94	0	284	0	1	48	48	1.16
92336--92542	103	2.0	103	97	0	387	31	15	14	38	1.87
94153--94289	16	8.2	16	71	22	79	1	18	2	77	0.97
94153--94278	20	6.0	21	76	15	95	0	17	3	78	0.93
94169--94278	19	5.6	18	72	20	78	0	16	3	79	0.93
94161--94283	9	13.8	9	73	5	81	1	17	3	78	0.97
94153--94273	55	2.2	56	81	15	137	0	18	3	77	0.95
94153--94278	36	3.5	37	77	10	104	0	17	3	78	0.93
98322--98382	25	2.4	25	88	0	95	59	6	6	27	1.48
100731--100769	18	2.1	19	90	4	62	20	0	7	71	1.10
101240--101299	17	3.5	15	76	24	57	55	1	0	43	1.10
101232--101280	20	2.5	19	83	9	64	59	2	0	38	1.09
101232--101302	37	2.0	38	89	10	114	56	1	0	42	1.08
101266--101339	28	2.8	29	74	25	74	48	2	0	48	1.15
101269--101346	23	3.3	22	77	19	77	48	2	0	48	1.15
101218--101355	64	2.2	62	81	10	156	47	2	0	50	1.13
102676--102743	35	1.9	35	88	5	102	45	25	0	29	1.54
102749--102822	35	2.1	35	82	5	87	33	0	24	41	1.55
104401--104429	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106884--106944	32	1.9	32	93	0	104	52	1	8	37	1.41
107029--107077	21	2.5	19	76	6	53	53	2	2	42	1.24
107061--107114	24	2.2	24	83	6	63	59	0	0	40	0.98
107122--107152	15	2.0	16	93	6	55	51	0	0	48	1.00
107157--107274	56	2.1	56	87	1	166	49	4	3	43	1.39
107135--107522	195	2.0	195	98	0	758	51	3	3	41	1.36
107352--107469	56	2.1	56	85	1	157	49	4	4	42	1.42
107552--107584	14	2.4	14	95	5	59	33	0	0	66	0.92
107615--107692	27	3.0	26	71	17	72	46	1	1	51	1.17
107564--107710	65	2.3	63	81	8	163	43	2	2	51	1.27
107749--107804	13	4.1	14	75	11	53	51	1	0	46	1.11
115791--115823	16	2.1	16	94	0	57	60	6	3	30	1.36
126022--126060	19	2.0	20	90	9	64	64	28	0	7	1.21
133643--133698	21	2.7	20	81	8	58	30	19	16	33	1.94
141277--141515	45	5.3	45	85	3	284	30	19	9	41	1.83
141299--141554	90	2.8	90	80	1	271	29	20	10	39	1.86
141281--141554	135	2.0	135	83	2	345	29	20	9	39	1.85
146237--146831	298	2.0	298	95	0	1084	32	19	15	32	1.93
150181--150237	30	1.9	30	88	0	87	38	5	19	36	1.74
168864--168913	14	3.6	14	78	10	57	54	2	0	44	1.11
168871--168923	23	2.3	24	78	12	58	50	1	1	45	1.23
169187--169216	3	10.0	3	92	0	51	63	0	3	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172124--172158	18	1.9	18	88	0	52	28	17	0	54	1.43
177263--177297	18	1.9	18	88	0	52	28	17	0	54	1.43
178604--178643	18	2.2	18	100	0	80	10	22	50	17	1.76
182422--182456	18	1.9	18	88	0	52	28	17	0	54	1.43
183748--183798	18	3.0	18	83	11	63	21	23	39	15	1.92
187577--187611	18	1.9	18	88	0	52	28	17	0	54	1.43
192694--192728	18	1.9	18	88	0	52	28	17	0	54	1.43
197781--197815	18	1.9	18	88	0	52	28	17	0	54	1.43

Tables:   1

The End!