Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008802.1 Hibiscus syriacus cultivar Beakdansim tig00111952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1147353
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 6
Found at i:532639 original size:20 final size:20
Alignment explanation
Indices: 532614--532657 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
532604 TCATGGTGAT
*
532614 GACTATATGTATGATCCTGA
1 GACTATATGTATGATCCTCA
532634 GACTATATGTATGATCCTCA
1 GACTATATGTATGATCCTCA
532654 GACT
1 GACT
532658 TGAGATCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (20 bp):
GACTATATGTATGATCCTCA
Found at i:533433 original size:25 final size:24
Alignment explanation
Indices: 533405--533461 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
533395 TCTTTAATGT
533405 ATATTTAATTTGAATTAATT-AAATA
1 ATATTTAATTT--ATTAATTCAAATA
*
533430 ATATTTTATTTATTAATTCGAAATA
1 ATATTTAATTTATTAATTC-AAATA
533455 A-ATTTAA
1 ATATTTAA
533462 AAAACCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 5 0.18
25 16 0.57
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATTTAATTTATTAATTCAAATA
Found at i:538598 original size:21 final size:21
Alignment explanation
Indices: 538565--538605 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
538555 AAAACCTTTC
*
538565 GACTTACTCACTTTCTACGAT
1 GACTTACTCACTTTCAACGAT
538586 GACTT-CTCGACTTTCAACGA
1 GACTTACTC-ACTTTCAACGA
538606 CAATTTACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.34
Consensus pattern (21 bp):
GACTTACTCACTTTCAACGAT
Found at i:541625 original size:21 final size:21
Alignment explanation
Indices: 541601--541640 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
541591 CTTTTTAAGG
*
541601 AAAATGATTGATCCCTTTCCA
1 AAAAGGATTGATCCCTTTCCA
*
541622 AAAAGGATTGATCTCTTTC
1 AAAAGGATTGATCCCTTTC
541641 TTCAAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (21 bp):
AAAAGGATTGATCCCTTTCCA
Found at i:543646 original size:31 final size:31
Alignment explanation
Indices: 543582--543683 Score: 109
Period size: 31 Copynumber: 3.3 Consensus size: 31
543572 ACAAATACGA
* * ** *
543582 ACAGTAACAATTCAGAAAACATATCATTTAG
1 ACAGTCACAGTTCAGAAAACATATTGTTCAG
* *
543613 ACAGTTATAGCTT-AGAAAACATATTGTTCAG
1 ACAGTCACAG-TTCAGAAAACATATTGTTCAG
543644 ACAGTCACAGTTCA-AGAAACATATTGTTCAG
1 ACAGTCACAGTTCAGA-AAACATATTGTTCAG
543675 ACAGTCACA
1 ACAGTCACA
543684 ACTTAGGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
30 3 0.05
31 55 0.92
32 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (31 bp):
ACAGTCACAGTTCAGAAAACATATTGTTCAG
Found at i:543694 original size:31 final size:30
Alignment explanation
Indices: 543623--543694 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 30
543613 ACAGTTATAG
*
543623 CTTAGAAAACATATTGTTCAGACAGTCACA
1 CTTAGGAAACATATTGTTCAGACAGTCACA
* *
543653 GTTCAAGAAACATATTGTTCAGACAGTCACAA
1 CTT-AGGAAACATATTGTTCAGACAGTCAC-A
543685 CTTAGGAAAC
1 CTTAGGAAAC
543695 GTTGTTCGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 30 0.86
32 3 0.09
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (30 bp):
CTTAGGAAACATATTGTTCAGACAGTCACA
Found at i:543743 original size:18 final size:18
Alignment explanation
Indices: 543720--543756 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
543710 TTCAGACATC
543720 TAACCAAATAACAAATTA
1 TAACCAAATAACAAATTA
*
543738 TAACCAATTAACAAATTA
1 TAACCAAATAACAAATTA
543756 T
1 T
543757 GCAGTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.16, G:0.00, T:0.27
Consensus pattern (18 bp):
TAACCAAATAACAAATTA
Found at i:544023 original size:68 final size:68
Alignment explanation
Indices: 543911--544048 Score: 222
Period size: 68 Copynumber: 2.0 Consensus size: 68
543901 CGATCTTCAC
* *
543911 TTCGTCTTATCGTTAATTGATACTCGTAAAAATATTATCGAACTTATCCTTACTCCAAGTGTAGA
1 TTCGTCTTATCGTCAATTGATACTCGTAAAAATATTATCAAACTTATCCTTACTCCAAGTGTAGA
543976 CGG
66 CGG
* * * *
543979 TTCGTCTTATTGTCAATTGATACTCGTACAAATATTATCAAACTTATCTTTACTCCAAGTGTCGA
1 TTCGTCTTATCGTCAATTGATACTCGTAAAAATATTATCAAACTTATCCTTACTCCAAGTGTAGA
544044 CGG
66 CGG
544047 TT
1 TT
544049 GGTAAACGTG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (68 bp):
TTCGTCTTATCGTCAATTGATACTCGTAAAAATATTATCAAACTTATCCTTACTCCAAGTGTAGA
CGG
Found at i:545610 original size:67 final size:66
Alignment explanation
Indices: 545455--545702 Score: 300
Period size: 67 Copynumber: 3.7 Consensus size: 66
545445 GTACTCGATA
* * * * * *
545455 CACTCCACCTCATGTAACACTAAGGTACGCGAGTCACATCGAGTAATC-TGTACAATATTCATTT
1 CACTCCACCTCATGCACCACAAAGGTACACGAGTCACATCGAGTGATCTTGTAC-ATATTCAATT
545519 AT
65 AT
* *
545521 CACTCCACCTTATGCACCACAAAGGTACACGAGTCACATTGAGTGATCTTGTACAGTATTCAATT
1 CACTCCACCTCATGCACCACAAAGGTACACGAGTCACATCGAGTGATCTTGTACA-TATTCAATT
545586 AT
65 AT
* * * * * *
545588 CACTCCAGCTCAAGCACGACAAAGGTACACGAGTTACAACGAGTGATCTTGTACATCATTTAATT
1 CACTCCACCTCATGCACCACAAAGGTACACGAGTCACATCGAGTGATCTTGTACAT-ATTCAATT
*
545653 TT
65 AT
* * *
545655 CACTCGACCTCATGCACCATAAAGGTACACGAATCACATCGAGTGATC
1 CACTCCACCTCATGCACCACAAAGGTACACGAGTCACATCGAGTGATC
545703 AATACAATAT
Statistics
Matches: 154, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
66 43 0.28
67 111 0.72
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (66 bp):
CACTCCACCTCATGCACCACAAAGGTACACGAGTCACATCGAGTGATCTTGTACATATTCAATTA
T
Found at i:554389 original size:20 final size:20
Alignment explanation
Indices: 554364--554430 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 20
554354 TACCAATAAT
554364 AATAATATTATATATTTTAA
1 AATAATATTATATATTTTAA
* *
554384 AATAATAATATATCTATTATAA
1 AATAAT-AT-TATATATTTTAA
554406 TAATATATATTATTATATTTTAA
1 -AATA-ATATTA-TATATTTTAA
554429 AA
1 AA
554431 AATTATGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 6 0.16
21 2 0.05
22 14 0.37
23 14 0.37
24 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (20 bp):
AATAATATTATATATTTTAA
Found at i:554416 original size:15 final size:16
Alignment explanation
Indices: 554385--554418 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
554375 ATATTTTAAA
554385 ATAATAATATATCTATT
1 ATAATAATATA-CTATT
554402 ATAATAATATA-TATT
1 ATAATAATATACTATT
554417 AT
1 AT
554419 TATATTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
17 11 0.65
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATAATATACTATT
Found at i:557946 original size:31 final size:31
Alignment explanation
Indices: 557873--557947 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
557863 TAAATAACAA
*
557873 AATATACGGTCACTTTTATTTTTATTTAATT
1 AATATACGGTCACTTTCATTTTTATTTAATT
* * *
557904 AAAATATGGTCACTTTCGTTTTTATTTAATT
1 AATATACGGTCACTTTCATTTTTATTTAATT
*
557935 AATATGCGGTCAC
1 AATATACGGTCAC
557948 CATGGGTTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (31 bp):
AATATACGGTCACTTTCATTTTTATTTAATT
Found at i:558352 original size:41 final size:41
Alignment explanation
Indices: 558307--558429 Score: 109
Period size: 36 Copynumber: 3.2 Consensus size: 41
558297 CATGATGTAT
558307 ATTTTTTATCTTATTGTTTAAATACTTAACCTAAATTCATA
1 ATTTTTTATCTTATTGTTTAAATACTTAACCTAAATTCATA
* * * *** * *
558348 A---TTT-TCTTAAT-CTAAAATAGACAACAT-GATGT-AT-
1 ATTTTTTATCTTATTGTTTAAATACTTAACCTAAAT-TCATA
558382 ATTTTTTATCTTATTGTTTAAATACTTAACCTAAATTCATA
1 ATTTTTTATCTTATTGTTTAAATACTTAACCTAAATTCATA
558423 ATTTTTT
1 ATTTTTT
558430 TATGTATATT
Statistics
Matches: 57, Mismatches: 16, Indels: 18
0.63 0.18 0.20
Matches are distributed among these distances:
34 1 0.02
35 4 0.07
36 11 0.19
37 9 0.16
38 9 0.16
39 11 0.19
40 4 0.07
41 8 0.14
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (41 bp):
ATTTTTTATCTTATTGTTTAAATACTTAACCTAAATTCATA
Found at i:558401 original size:75 final size:75
Alignment explanation
Indices: 558278--558427 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
558268 AAAATCAATG
558278 CTTAATCTAAAATAGACAACATGATGTATATTTTTTATCTTATTGTTTAAATACTTAACCTAAAT
1 CTTAATCTAAAATAGACAACATGATGTATATTTTTTATCTTATTGTTTAAATACTTAACCTAAAT
558343 TCATAATTTT
66 TCATAATTTT
558353 CTTAATCTAAAATAGACAACATGATGTATATTTTTTATCTTATTGTTTAAATACTTAACCTAAAT
1 CTTAATCTAAAATAGACAACATGATGTATATTTTTTATCTTATTGTTTAAATACTTAACCTAAAT
558418 TCATAATTTT
66 TCATAATTTT
558428 TTTATGTATA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.45
Consensus pattern (75 bp):
CTTAATCTAAAATAGACAACATGATGTATATTTTTTATCTTATTGTTTAAATACTTAACCTAAAT
TCATAATTTT
Found at i:558476 original size:27 final size:28
Alignment explanation
Indices: 558439--558509 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 28
558429 TTATGTATAT
*
558439 TATTTTTTTATATTAACCT-A-TTAAATA
1 TATTTTATT-TATTAACCTAATTTAAATA
*
558466 TATTTTA-TTATTAACTTAATTTAAATA
1 TATTTTATTTATTAACCTAATTTAAATA
558493 TATTTTAATTTTATTAA
1 TATTTT-A-TTTATTAA
558510 AAATATGACT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
25 8 0.22
26 2 0.05
27 19 0.51
28 1 0.03
30 7 0.19
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (28 bp):
TATTTTATTTATTAACCTAATTTAAATA
Found at i:558477 original size:25 final size:26
Alignment explanation
Indices: 558444--558499 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
558434 TATATTATTT
558444 TTTTATATTAACCT-A-TTAAATATA
1 TTTTATATTAACCTAATTTAAATATA
*
558468 TTTTATTATTAACTTAATTTAAATATA
1 TTTTA-TATTAACCTAATTTAAATATA
558495 TTTTA
1 TTTTA
558500 ATTTTATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 5 0.18
25 8 0.29
26 1 0.04
27 14 0.50
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTATATTAACCTAATTTAAATATA
Found at i:560980 original size:25 final size:25
Alignment explanation
Indices: 560918--561015 Score: 69
Period size: 25 Copynumber: 3.9 Consensus size: 25
560908 TATATAAATA
*
560918 ATTAAATTTATTTTTATA-T-ATATT
1 ATTAAATATATTTTTATATTAAT-TT
*
560942 AGCTTAAAAAATATTTTTATATTAATTT
1 A--TT-AAATATATTTTTATATTAATTT
* *
560970 ATTAAATATA-TTTTATTTTTATTT
1 ATTAAATATATTTTTATATTAATTT
* *
560994 A-AAAATATATATTTTATGTTAA
1 ATTAAATATAT-TTTTATATTAA
561016 AATTGATTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
23 7 0.12
24 14 0.24
25 15 0.25
26 4 0.07
27 13 0.22
28 4 0.07
29 2 0.03
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (25 bp):
ATTAAATATATTTTTATATTAATTT
Found at i:560999 original size:23 final size:23
Alignment explanation
Indices: 560948--561003 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
560938 TATTAGCTTA
560948 AAAAATAT-TTTTATATTAATTT
1 AAAAATATATTTTATATTAATTT
* * *
560970 ATTAAATATATTTTATTTTTATTT
1 A-AAAATATATTTTATATTAATTT
560994 AAAAATATAT
1 AAAAATATAT
561004 ATTTTATGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 1 0.04
23 14 0.50
24 13 0.46
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
AAAAATATATTTTATATTAATTT
Found at i:576775 original size:65 final size:65
Alignment explanation
Indices: 576689--576818 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
576679 TGGTTCTTTG
576689 TTTTTTGTTTATGAATGTCCTTTCCTTTTCTCTCTCTCGTTGTTG-TTTTTCACCCCAAATGGTT
1 TTTTTTGTTTATGAATGTCCTTTCCTTTTCTCTCTCTCGTTGTTGTTTTTTCACCCCAAATGGTT
576753 TTTTTTGTTTTATGAATGTCCTTTCCTTTTCTCTCTCTCGTTGTTGTTTTTTCACCCCAAATGGT
1 TTTTTTG-TTTATGAATGTCCTTTCCTTTTCTCTCTCTCGTTGTTGTTTTTTCACCCCAAATGGT
576818 T
65 T
576819 CCCTGATATC
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 7 0.11
65 38 0.59
66 19 0.30
ACGTcount: A:0.11, C:0.22, G:0.12, T:0.55
Consensus pattern (65 bp):
TTTTTTGTTTATGAATGTCCTTTCCTTTTCTCTCTCTCGTTGTTGTTTTTTCACCCCAAATGGTT
Found at i:577298 original size:3 final size:3
Alignment explanation
Indices: 577290--577329 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
577280 TAACATGTAA
*
577290 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
577330 TTTTTTAGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:586285 original size:82 final size:82
Alignment explanation
Indices: 586148--586311 Score: 328
Period size: 82 Copynumber: 2.0 Consensus size: 82
586138 ACCCATCTAA
586148 CACTTTGATCATGAAACCATGAAAAACTTATGTCAAATTAAAGATAATTTGATGGAGAACATTTT
1 CACTTTGATCATGAAACCATGAAAAACTTATGTCAAATTAAAGATAATTTGATGGAGAACATTTT
586213 CTTATTTCACACTTTAG
66 CTTATTTCACACTTTAG
586230 CACTTTGATCATGAAACCATGAAAAACTTATGTCAAATTAAAGATAATTTGATGGAGAACATTTT
1 CACTTTGATCATGAAACCATGAAAAACTTATGTCAAATTAAAGATAATTTGATGGAGAACATTTT
586295 CTTATTTCACACTTTAG
66 CTTATTTCACACTTTAG
586312 TCCAAATTCT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (82 bp):
CACTTTGATCATGAAACCATGAAAAACTTATGTCAAATTAAAGATAATTTGATGGAGAACATTTT
CTTATTTCACACTTTAG
Found at i:586993 original size:29 final size:26
Alignment explanation
Indices: 586943--587005 Score: 63
Period size: 29 Copynumber: 2.3 Consensus size: 26
586933 TGAACTTTTA
*
586943 CAAAATTTATACTTTGGCCACTAAACTTC
1 CAAAATTTATACTTTGACCACT--A-TTC
* * *
586972 CAAAATTTATATTTTTATCACTATTC
1 CAAAATTTATACTTTGACCACTATTC
586998 CAAAATTT
1 CAAAATTT
587006 TGGGGTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 11 0.37
27 1 0.03
29 18 0.60
ACGTcount: A:0.37, C:0.19, G:0.03, T:0.41
Consensus pattern (26 bp):
CAAAATTTATACTTTGACCACTATTC
Found at i:591094 original size:23 final size:23
Alignment explanation
Indices: 591068--591111 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
591058 AAAAATTCAG
* *
591068 GAGCTCAATTGAAGCTCGATTTT
1 GAGCTCAATTCAACCTCGATTTT
*
591091 GAGCTCGATTCAACCTCGATT
1 GAGCTCAATTCAACCTCGATT
591112 CAAGCTCGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (23 bp):
GAGCTCAATTCAACCTCGATTTT
Found at i:591373 original size:34 final size:33
Alignment explanation
Indices: 591335--591401 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
591325 TTTACAAAAT
*
591335 ATGACAACACATCTAAATTTATAAAAAGATGACA
1 ATGACAACACATCCAAATTTAT-AAAAGATGACA
* *
591369 ATGACAACATATCCAAATTTATACAAGATGACA
1 ATGACAACACATCCAAATTTATAAAAGATGACA
591402 TTATTTTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 10 0.33
34 20 0.67
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.24
Consensus pattern (33 bp):
ATGACAACACATCCAAATTTATAAAAGATGACA
Found at i:591547 original size:30 final size:30
Alignment explanation
Indices: 591487--591577 Score: 137
Period size: 30 Copynumber: 2.9 Consensus size: 30
591477 CCAGTTAAGC
* *
591487 TTACTTACAAAAGATGGCAGCAATATGTCAAGT
1 TTACTTACAAAAGAT---TGCAACATGTCAAGT
591520 TTACTTACAAAAGATTGCAACATGTCAAGT
1 TTACTTACAAAAGATTGCAACATGTCAAGT
591550 TTACTTACAAAAGATTGCAACATGTCAA
1 TTACTTACAAAAGATTGCAACATGTCAA
591578 ATTAAGTTCC
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
30 41 0.73
33 15 0.27
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (30 bp):
TTACTTACAAAAGATTGCAACATGTCAAGT
Found at i:592162 original size:13 final size:13
Alignment explanation
Indices: 592144--592168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
592134 TTACCCTAAG
592144 TACATCAATCACC
1 TACATCAATCACC
592157 TACATCAATCAC
1 TACATCAATCAC
592169 GTGTAGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.24
Consensus pattern (13 bp):
TACATCAATCACC
Found at i:601428 original size:27 final size:28
Alignment explanation
Indices: 601375--601430 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
601365 AAAGTATGTT
* * * *
601375 TTATATATTTATTTTGTTTGTATTATTA
1 TTATATATTTACTTTGTATATAATATTA
601403 TTATATA-TTACTTTGTATATAATATTA
1 TTATATATTTACTTTGTATATAATATTA
601430 T
1 T
601431 AGCATGATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.62
Consensus pattern (28 bp):
TTATATATTTACTTTGTATATAATATTA
Found at i:607998 original size:37 final size:37
Alignment explanation
Indices: 607924--608116 Score: 159
Period size: 37 Copynumber: 5.4 Consensus size: 37
607914 TTGGGTGTTG
* * * *
607924 TTTCTCTCGAAACAAAATGTCGTCTCACTTGAGACATT
1 TTTCTCTCAAAAC-AAATTTTGTTTCACTTGAGACATT
*
607962 TTTCTCTTAAAACAAATTTTGTTTCACTTGAGACATT
1 TTTCTCTCAAAACAAATTTTGTTTCACTTGAGACATT
** ** * ***
607999 TTTCT-TCGGAAC-AA--TAATTTCA---AAGTTGTT
1 TTTCTCTCAAAACAAATTTTGTTTCACTTGAGACATT
* * *
608029 TTTCT-TAAAAACAAATTTTGTCTCGCTTGAGACATT
1 TTTCTCTCAAAACAAATTTTGTTTCACTTGAGACATT
* *
608065 TTTCTCTTAAAACAAATTTTGTTTCACTTGAGATATT
1 TTTCTCTCAAAACAAATTTTGTTTCACTTGAGACATT
608102 TTTCTCTCAAAACAA
1 TTTCTCTCAAAACAA
608117 GCATCGTCTC
Statistics
Matches: 118, Mismatches: 30, Indels: 15
0.72 0.18 0.09
Matches are distributed among these distances:
30 13 0.11
31 2 0.02
33 10 0.08
35 2 0.02
36 13 0.11
37 67 0.57
38 11 0.09
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.42
Consensus pattern (37 bp):
TTTCTCTCAAAACAAATTTTGTTTCACTTGAGACATT
Found at i:608132 original size:37 final size:37
Alignment explanation
Indices: 608048--608138 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 37
608038 AACAAATTTT
* ** *
608048 GTCTCGCTTGAGACATTTTTCTCTTAAAACAAATTTT
1 GTCTCGCTTGAGACATTTTTCTCTCAAAACAAACATC
* * * *
608085 GTTTCACTTGAGATATTTTTCTCTCAAAACAAGCATC
1 GTCTCGCTTGAGACATTTTTCTCTCAAAACAAACATC
608122 GTCTCGCTTGAGACATT
1 GTCTCGCTTGAGACATT
608139 CTCCCAAAAT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (37 bp):
GTCTCGCTTGAGACATTTTTCTCTCAAAACAAACATC
Found at i:608316 original size:36 final size:36
Alignment explanation
Indices: 608253--608361 Score: 128
Period size: 36 Copynumber: 3.0 Consensus size: 36
608243 CTTTGAATAT
*
608253 GTTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACA
1 GTTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACA
* *
608290 GTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGATA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* * ** * *
608326 ATTTCCCTTAAAACGGACTTTGTCTCACTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
608362 TTTTTTTCTC
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
36 48 0.79
37 13 0.21
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
Found at i:608659 original size:52 final size:52
Alignment explanation
Indices: 608580--608727 Score: 172
Period size: 52 Copynumber: 2.8 Consensus size: 52
608570 GAAGACTTTT
* * * *
608580 AGAAACTAAGCTTGATTTTCAGGGGTTTCTCGATGTTTTCAAATAAACTTGAA
1 AGAAACTAAGCCTAATTTT-AGGGGTTTCTTGATGTTTTCAAATAAACTTCAA
* * *
608633 AGAAACTAAACCTAATTTTAGGGGTTTCTTAATGTTTT-AAATAAATTTCAA
1 AGAAACTAAGCCTAATTTTAGGGGTTTCTTGATGTTTTCAAATAAACTTCAA
* * * *
608684 AGAAATTAAGCCTAATTTTTAGTGATTTCTTGATATTTTCAAAT
1 AGAAACTAAGCCTAA-TTTTAGGGGTTTCTTGATGTTTTCAAAT
608728 GAGTTTTTAT
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
51 24 0.30
52 36 0.45
53 20 0.25
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (52 bp):
AGAAACTAAGCCTAATTTTAGGGGTTTCTTGATGTTTTCAAATAAACTTCAA
Found at i:608698 original size:51 final size:53
Alignment explanation
Indices: 608580--608702 Score: 160
Period size: 51 Copynumber: 2.4 Consensus size: 53
608570 GAAGACTTTT
* * * *
608580 AGAAACTAAGCTTGATTTTCAGGGGTTTCTCGATGTTTTCAAATAAACTTGAA
1 AGAAACTAAGCCTAATTTTCAGGGGTTTCTCAATGTTTTCAAATAAACTTCAA
* * *
608633 AGAAACTAAACCTAATTTT-AGGGGTTTCTTAATGTTTT-AAATAAATTTCAA
1 AGAAACTAAGCCTAATTTTCAGGGGTTTCTCAATGTTTTCAAATAAACTTCAA
*
608684 AGAAATTAAGCCTAATTTT
1 AGAAACTAAGCCTAATTTT
608703 TAGTGATTTC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 28 0.46
52 17 0.28
53 16 0.26
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (53 bp):
AGAAACTAAGCCTAATTTTCAGGGGTTTCTCAATGTTTTCAAATAAACTTCAA
Found at i:608894 original size:22 final size:22
Alignment explanation
Indices: 608864--608932 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
608854 AAGGGTTTCT
*
608864 TGATAAGTAAGTCTTTCGAGCA
1 TGATGAGTAAGTCTTTCGAGCA
* *
608886 TGATGAGTAAGTCCTTCGGGC-
1 TGATGAGTAAGTCTTTCGAGCA
* * *
608907 -CATCAGTAAGTCTTTCGAGTA
1 TGATGAGTAAGTCTTTCGAGCA
608928 TGATG
1 TGATG
608933 TTTAAATTCT
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
20 15 0.43
22 20 0.57
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (22 bp):
TGATGAGTAAGTCTTTCGAGCA
Found at i:608931 original size:42 final size:42
Alignment explanation
Indices: 608869--608989 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
608859 TTTCTTGATA
608869 AGTAAGTCTTTCGAGCATGATGAGTAAGTCCTTCGGGCCATC-
1 AGTAAGTCTTTCGAGCATGATGA-TAAGTCCTTCGGGCCATCT
* * * * * *
608911 AGTAAGTCTTTCGAGTATGATGTTTAAATTCTTCAGGTCATCT
1 AGTAAGTCTTTCGAGCATGATG-ATAAGTCCTTCGGGCCATCT
* * *
608954 A-TAAGTTTTTTGAGCAAGATGATAAGTCCTTCGGGC
1 AGTAAGTCTTTCGAGCATGATGATAAGTCCTTCGGGC
608990 TAATCCATAT
Statistics
Matches: 62, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
41 10 0.16
42 51 0.82
43 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (42 bp):
AGTAAGTCTTTCGAGCATGATGATAAGTCCTTCGGGCCATCT
Found at i:610138 original size:139 final size:138
Alignment explanation
Indices: 609960--610351 Score: 552
Period size: 139 Copynumber: 2.8 Consensus size: 138
609950 AAGGAGGTGA
*
609960 ATCAACATTTCA-AGAAGAGTTCATAATGAGAAGAACTCATCCGAAAAAGGAGAAGAAGTTCATA
1 ATCAACATTTCAGTGAAGAGTTCATAATGAGAAGAACTCATCCGAAAAAGGAGAAGAAGTTCATA
* * *
610024 ATGAGAAGAACTTGTTCAACCTTAACTCGATTCATCGTATATGGAGTTGAATAAGCAACACCTCA
66 ATGAGAAGAACTTATTCAACCTTAACTAGATTCATCGCATATGGAGTTGAATAAGCAACACCTCA
**
610089 CTTGAGGG
131 CTCAAGGG
* * * *
610097 ATCAACATTTCCAGTGAAGAGTTCATAATGAGAAGAACTCATTCGAAAAAGAAGAATAGGTTCAT
1 ATCAACATTT-CAGTGAAGAGTTCATAATGAGAAGAACTCATCCGAAAAAGGAGAAGAAGTTCAT
* * *
610162 AATGAGAAGAACTTATTCAACCTTAGCTAGATTCATCACATATGGAGTTGAATCAGCAACACCTC
65 AATGAGAAGAACTTATTCAACCTTAACTAGATTCATCGCATATGGAGTTGAATAAGCAACACCTC
610227 ACTCAAGGG
130 ACTCAAGGG
* * ** * *
610236 ATCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAGGGAGAGGAAGTTCAT
1 ATCAACA-TTTCAGTGAAGAGTTCATAATGAGAAGAACTCATCCGAAAAAGGAGAAGAAGTTCAT
* * *
610301 AATGAGAAGAACTTATTCAACCTTAACTTGTTTCCATTGCATATGGAGTTG
65 AATGAGAAGAACTTATTCAACCTTAACTAGATT-CATCGCATATGGAGTTG
610352 GAACAACACC
Statistics
Matches: 223, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
137 10 0.04
138 2 0.01
139 193 0.87
140 18 0.08
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (138 bp):
ATCAACATTTCAGTGAAGAGTTCATAATGAGAAGAACTCATCCGAAAAAGGAGAAGAAGTTCATA
ATGAGAAGAACTTATTCAACCTTAACTAGATTCATCGCATATGGAGTTGAATAAGCAACACCTCA
CTCAAGGG
Found at i:610180 original size:20 final size:20
Alignment explanation
Indices: 610118--610180 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
610108 CAGTGAAGAG
*
610118 TTCATAATGAGAAGAACTCA
1 TTCATAATGAGAAGAACTTA
*
610138 TTCGA-AA-AAGAAGAA--TA
1 TTC-ATAATGAGAAGAACTTA
610155 GGTTCATAATGAGAAGAACTTA
1 --TTCATAATGAGAAGAACTTA
610177 TTCA
1 TTCA
610181 ACCTTAGCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 14
0.66 0.06 0.28
Matches are distributed among these distances:
17 1 0.03
18 1 0.03
19 12 0.36
20 16 0.48
21 1 0.03
22 2 0.06
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.25
Consensus pattern (20 bp):
TTCATAATGAGAAGAACTTA
Found at i:611728 original size:27 final size:28
Alignment explanation
Indices: 611675--611730 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
611665 AAAGTATGTT
* * * *
611675 TTATATATTTATTTTGTTTGTATTATTA
1 TTATATATTTACTTTGTATATAATATTA
611703 TTATATA-TTACTTTGTATATAATATTA
1 TTATATATTTACTTTGTATATAATATTA
611730 T
1 T
611731 AGCAAGATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.62
Consensus pattern (28 bp):
TTATATATTTACTTTGTATATAATATTA
Found at i:614210 original size:37 final size:37
Alignment explanation
Indices: 614155--614266 Score: 179
Period size: 37 Copynumber: 3.0 Consensus size: 37
614145 AACATAACGT
* * **
614155 TAGAGTTTTACTAGGATTCAAATTTTTAAAAATATGA
1 TAGAGTTTTACTAAGATTCAAACTCCTAAAAATATGA
*
614192 TAGAGTTTTACTATGATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTAAGATTCAAACTCCTAAAAATATGA
614229 TAGAGTTTTACTAAGATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTAAGATTCAAACTCCTAAAAATATGA
614266 T
1 T
614267 CCATAAATAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (37 bp):
TAGAGTTTTACTAAGATTCAAACTCCTAAAAATATGA
Found at i:614820 original size:20 final size:20
Alignment explanation
Indices: 614786--614825 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
614776 TTTCTCTCTC
* *
614786 TATTATTTATTTATACATAT
1 TATTATTAATATATACATAT
*
614806 TATTATTAATATATATATAT
1 TATTATTAATATATACATAT
614826 ATATATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTATTAATATATACATAT
Found at i:614901 original size:2 final size:2
Alignment explanation
Indices: 614894--614927 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
614884 ACATACATAC
614894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
614928 TATTTATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:615086 original size:13 final size:13
Alignment explanation
Indices: 615064--615097 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
615054 CTATTTCATT
*
615064 TTTATTTTTATTC
1 TTTATCTTTATTC
*
615077 TTTATCTTTATTT
1 TTTATCTTTATTC
615090 TTTATCTT
1 TTTATCTT
615098 CTTTACATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATCTTTATTC
Found at i:615195 original size:15 final size:16
Alignment explanation
Indices: 615171--615200 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
615161 TATATTATTA
615171 TCATTATTATTTTTCC
1 TCATTATTATTTTTCC
615187 TCATT-TTATTTTTC
1 TCATTATTATTTTTC
615201 TTATCGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (16 bp):
TCATTATTATTTTTCC
Found at i:630936 original size:30 final size:29
Alignment explanation
Indices: 630872--630962 Score: 94
Period size: 30 Copynumber: 3.1 Consensus size: 29
630862 CTAAATTTTT
* *
630872 TTTAGTGACTAAAATGTAAGTTTTAAAAG
1 TTTAGTGACTAAAATATAAATTTTAAAAG
* * *
630901 GTTAGTGGCTAAAGTATAAATTTTGAAAAG
1 TTTAGTGACTAAAATATAAATTTT-AAAAG
*
630931 TTTAGTGACCAAAA-ATAAAATTTTTAAAAG
1 TTTAGTGACTAAAATAT-AAA-TTTTAAAAG
630961 TT
1 TT
630963 ATATATTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
29 21 0.42
30 25 0.50
31 4 0.08
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.36
Consensus pattern (29 bp):
TTTAGTGACTAAAATATAAATTTTAAAAG
Found at i:642223 original size:19 final size:19
Alignment explanation
Indices: 642199--642238 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
642189 TTTATAGATA
642199 TTCGAATGTTAAAATCAGG
1 TTCGAATGTTAAAATCAGG
642218 TTCGAATGTTAAAATCAGG
1 TTCGAATGTTAAAATCAGG
642237 TT
1 TT
642239 ATGTTAGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (19 bp):
TTCGAATGTTAAAATCAGG
Found at i:642981 original size:18 final size:18
Alignment explanation
Indices: 642958--643005 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
642948 AAAGCTTAAG
642958 GAAACTTAAAGAGAAGTA
1 GAAACTTAAAGAGAAGTA
642976 GAAACTTAAAGAGAAGTA
1 GAAACTTAAAGAGAAGTA
*
642994 GAAACTAAAAGA
1 GAAACTTAAAGA
643006 TTTACAAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15
Consensus pattern (18 bp):
GAAACTTAAAGAGAAGTA
Found at i:644017 original size:16 final size:16
Alignment explanation
Indices: 643996--644041 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 16
643986 TGCATTGCTA
643996 TACATGATCTATATGT
1 TACATGATCTATATGT
*
644012 TACATGTATACTATGTGT
1 TACATG-AT-CTATATGT
644030 TACATGATCTAT
1 TACATGATCTAT
644042 GTGGATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 10 0.37
17 4 0.15
18 13 0.48
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (16 bp):
TACATGATCTATATGT
Found at i:644042 original size:16 final size:16
Alignment explanation
Indices: 643996--644044 Score: 71
Period size: 16 Copynumber: 2.9 Consensus size: 16
643986 TGCATTGCTA
*
643996 TACATGATCTATATGT
1 TACATGATCTATGTGT
644012 TACATGTATACTATGTGT
1 TACATG-AT-CTATGTGT
644030 TACATGATCTATGTG
1 TACATGATCTATGTG
644045 GATATATGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 13 0.43
17 4 0.13
18 13 0.43
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (16 bp):
TACATGATCTATGTGT
Found at i:646038 original size:215 final size:216
Alignment explanation
Indices: 645667--646131 Score: 675
Period size: 215 Copynumber: 2.2 Consensus size: 216
645657 CTATGTGTAC
* * ** * *
645667 TATAGGCACTAAGTGTGCAACCAACGGAATTCATCATTTGTTGATGAACAACCGTATAGGCACTA
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAAAAGTATAAGAACTA
* * *
645732 AGTGTGCAACCTACATAATTCATCATATGTTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
66 AGTGTACAACCCACATAATTCATCATATATTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
* * * *
645797 CACGAAATTCATCATATGCTGATGAACAATCGTATATCCACTATGTGTG-ACACCCACGAAATTC
131 CACAAAATTCATCATATGCTGATGAACAACCGTATAGCCACTACGTGTGCA-ACCCACGAAATTC
645861 AT-ATATGTTGATGAACAACCA
195 ATCATATGTTGATGAACAACCA
* *
645882 TATAGGCACTAAGTGTGCAACCCACGTAATTCATCGTATGTTGATGAACAAAAGTATAAGAACTA
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAAAAGTATAAGAACTA
* *
645947 AGTGTACAACCCACGTAATTCATCATATATTGATGAATAA-CTGTATAGGCACTAAGTGTGCAAC
66 AGTGTACAACCCACATAATTCATCATATATTGATGAACAATC-GTATAGGCACTAAGTGTGCAAC
* * *
646011 CCATAAAATTCATCATATGTTGATGAACAACCGTATAGGCACTACGTGTGCAACCCACGAAATTC
130 CCACAAAATTCATCATATGCTGATGAACAACCGTATAGCCACTACGTGTGCAACCCACGAAATTC
* *
646076 ATCATATGTTGATGAACGACCG
195 ATCATATGTTGATGAACAACCA
**
646098 TATAGGCACTAAGTGTGCAACCCATTGAATTCAT
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCAT
646132 AATGTGTTTA
Statistics
Matches: 222, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
214 1 0.00
215 172 0.77
216 49 0.22
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (216 bp):
TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAAAAGTATAAGAACTA
AGTGTACAACCCACATAATTCATCATATATTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
CACAAAATTCATCATATGCTGATGAACAACCGTATAGCCACTACGTGTGCAACCCACGAAATTCA
TCATATGTTGATGAACAACCA
Found at i:646154 original size:54 final size:54
Alignment explanation
Indices: 645667--646121 Score: 637
Period size: 54 Copynumber: 8.4 Consensus size: 54
645657 CTATGTGTAC
* * *
645667 TATAGGCACTAAGTGTGCAACCAACGGAATTCATCATTTGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* *
645721 TATAGGCACTAAGTGTGCAACCTAC-ATAATTCATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACGA-AATTCATCATATGTTGATGAACAACCG
* *
645775 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGCTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
** * *
645829 TATATCCACTATGTGTG-ACACCCACGAAATTCAT-ATATGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCA-ACCCACGAAATTCATCATATGTTGATGAACAACCG
* * **
645882 TATAGGCACTAAGTGTGCAACCCACGTAATTCATCGTATGTTGATGAACAAAAG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * * * * *
645936 TATAAGAACTAAGTGTACAACCCACGTAATTCATCATATATTGATGAATAACTG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
**
645990 TATAGGCACTAAGTGTGCAACCCATAAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* *
646044 TATAGGCACTACGTGTGCAACCCACGAAATTCATCATATGTTGATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
646098 TATAGGCACTAAGTGTGCAACCCA
1 TATAGGCACTAAGTGTGCAACCCA
646122 TTGAATTCAT
Statistics
Matches: 354, Mismatches: 42, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
53 45 0.13
54 308 0.87
55 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
Found at i:646160 original size:54 final size:54
Alignment explanation
Indices: 645667--646180 Score: 495
Period size: 54 Copynumber: 9.5 Consensus size: 54
645657 CTATGTGTAC
* ** * *
645667 TATAGGCACTAAGTGTGCAACCAACGGAATTCATCATTTGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCATAGAATTCATCATATGTTGATGAACGACCG
* * * * *
645721 TATAGGCACTAAGTGTGCAACCTACATAATTCATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCATAGAATTCATCATATGTTGATGAACGACCG
* * * *
645775 TATAGGCACTAAGTGTGCAACCCA-CGAAATTCATCATATGCTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCATAG-AATTCATCATATGTTGATGAACGACCG
** * * * *
645829 TATATCCACTATGTGTG-ACACCCA-CGAAATTCAT-ATATGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCA-ACCCATAG-AATTCATCATATGTTGATGAACGACCG
* * * **
645882 TATAGGCACTAAGTGTGCAACCCA-CGTAATTCATCGTATGTTGATGAACAAAAG
1 TATAGGCACTAAGTGTGCAACCCATAG-AATTCATCATATGTTGATGAACGACCG
* * * * * ** *
645936 TATAAGAACTAAGTGTACAACCCA-CGTAATTCATCATATATTGATGAATAACTG
1 TATAGGCACTAAGTGTGCAACCCATAG-AATTCATCATATGTTGATGAACGACCG
* *
645990 TATAGGCACTAAGTGTGCAACCCATAAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCATAGAATTCATCATATGTTGATGAACGACCG
* *
646044 TATAGGCACTACGTGTGCAACCCA-CGAAATTCATCATATGTTGATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCATAG-AATTCATCATATGTTGATGAACGACCG
* * * * * *
646098 TATAGGCACTAAGTGTGCAACCCATTGAATTCATAATGTGTTTACGAATGACCG
1 TATAGGCACTAAGTGTGCAACCCATAGAATTCATCATATGTTGATGAACGACCG
* * *
646152 TATCGGCACTACA-TGTTCACCCCATAGAA
1 TATAGGCACTA-AGTGTGCAACCCATAGAA
646181 CTTATAATGT
Statistics
Matches: 398, Mismatches: 54, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
53 45 0.11
54 351 0.88
55 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCATAGAATTCATCATATGTTGATGAACGACCG
Found at i:649335 original size:29 final size:29
Alignment explanation
Indices: 649293--649351 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
649283 AGTCCATTAT
* *
649293 TCTTTTACTCAACAGTGTTTAACCTTTCA
1 TCTTTTACTCAACAGTATTTAACCATTCA
649322 TCTTTTACTCAACAGTATTTAACCATTCA
1 TCTTTTACTCAACAGTATTTAACCATTCA
649351 T
1 T
649352 ATAATTGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.05, T:0.44
Consensus pattern (29 bp):
TCTTTTACTCAACAGTATTTAACCATTCA
Found at i:649757 original size:79 final size:79
Alignment explanation
Indices: 649661--650028 Score: 456
Period size: 79 Copynumber: 4.7 Consensus size: 79
649651 TCTTCTAGGT
* * * * **
649661 TGATAATACACCCATATGCATTTCAACGTTGGCATCCTGTCATGCCAATAATGCACACATACACA
1 TGATAATGCACCCATATGCATTTCAACGTTGGCATCATTTCATGCCAATAATGCACTCATATGCA
649726 TTATT-TTGTTATGC
66 TTATTCTT-TTATGC
* * * *
649740 TGATAATGCACCCATATGTATTTCAACGTTGGAATCATGTCATGCCAATAATGCACTCATATGCG
1 TGATAATGCACCCATATGCATTTCAACGTTGGCATCATTTCATGCCAATAATGCACTCATATGCA
649805 TTATTCTTTTATGC
66 TTATTCTTTTATGC
* * ** * * * *
649819 TGATAATGCACCCATATGCTTTTCAGCAATGACATCTTTTCATGCCAATAATGAACCCATATGCA
1 TGATAATGCACCCATATGCATTTCAACGTTGGCATCATTTCATGCCAATAATGCACTCATATGCA
649884 TTATTCTTTTATGC
66 TTATTCTTTTATGC
* *
649898 TGATAATGCACCCATATGCATTTCAAC-TATGGTATCATTTCATGCTAATAATGCACTCATATGC
1 TGATAATGCACCCATATGCATTTCAACGT-TGGCATCATTTCATGCCAATAATGCACTCATATGC
649962 ATTATTCTTTTATGC
65 ATTATTCTTTTATGC
* * * *
649977 TGATAATGTACGCATATGCATTTC-A-GATATGACATCCTTTCATGCCAATAAT
1 TGATAATGCACCCATATGCATTTCAACG-T-TGGCATCATTTCATGCCAATAAT
650029 ACAAATATAG
Statistics
Matches: 250, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.00
79 247 0.99
80 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (79 bp):
TGATAATGCACCCATATGCATTTCAACGTTGGCATCATTTCATGCCAATAATGCACTCATATGCA
TTATTCTTTTATGC
Found at i:649835 original size:34 final size:34
Alignment explanation
Indices: 649787--649998 Score: 127
Period size: 34 Copynumber: 5.6 Consensus size: 34
649777 TGTCATGCCA
* *
649787 ATAATGCACTCATATGCGTTATTCTTTTATGCTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
* **
649821 ATAATGCACCCATATGCTTTTCAGCAATGACATCTTTTCATGCCA
1 ATAATGCACCCATATGC-ATT-----AT----TCTTTT-ATGCTG
*
649866 ATAATGAACCCATATGCATTATTCTTTTATGCTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
* *
649900 ATAATGCACCCATATGCATTTCAACTATGGTATCATTTCATGCTA
1 ATAATGCACCCATATGCA--T----TA---T-TC-TTTTATGCTG
*
649945 ATAATGCACTCATATGCATTATTCTTTTATGCTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
* *
649979 ATAATGTACGCATATGCATT
1 ATAATGCACCCATATGCATT
649999 TCAGATATGA
Statistics
Matches: 140, Mismatches: 16, Indels: 44
0.70 0.08 0.22
Matches are distributed among these distances:
34 63 0.45
35 10 0.07
36 2 0.01
39 4 0.03
40 4 0.03
43 2 0.01
44 10 0.07
45 45 0.32
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (34 bp):
ATAATGCACCCATATGCATTATTCTTTTATGCTG
Found at i:649941 original size:158 final size:158
Alignment explanation
Indices: 649661--650028 Score: 517
Period size: 158 Copynumber: 2.3 Consensus size: 158
649651 TCTTCTAGGT
* * ** * * *
649661 TGATAATACACCCATATGCATTTCAACGTTGGCATCCTGTCATGCCAATAATGCACACATACACA
1 TGATAATGCACCCATATGCATTTCAGCAATGACATCCTTTCATGCCAATAATGAACACATACACA
*
649726 TTATTTTGTTATGCTGATAATGCACCCATATGTATTTCAACGTTGGAATCATGTCATGCCAATAA
66 TTATTTTGTTATGCTGATAATGCACCCATATGCATTTCAACGTTGGAATCATGTCATGCCAATAA
*
649791 TGCACTCATATGCGTTATTCTTTTATGC
131 TGCACTCATATGCATTATTCTTTTATGC
* * * **
649819 TGATAATGCACCCATATGCTTTTCAGCAATGACATCTTTTCATGCCAATAATGAACCCATATGCA
1 TGATAATGCACCCATATGCATTTCAGCAATGACATCCTTTCATGCCAATAATGAACACATACACA
* * *
649884 TTATTCTT-TTATGCTGATAATGCACCCATATGCATTTCAAC-TATGGTATCATTTCATGCTAAT
66 TTATT-TTGTTATGCTGATAATGCACCCATATGCATTTCAACGT-TGGAATCATGTCATGCCAAT
649947 AATGCACTCATATGCATTATTCTTTTATGC
129 AATGCACTCATATGCATTATTCTTTTATGC
* *
649977 TGATAATGTACGCATATGCATTTCAG-ATATGACATCCTTTCATGCCAATAAT
1 TGATAATGCACCCATATGCATTTCAGCA-ATGACATCCTTTCATGCCAATAAT
650029 ACAAATATAG
Statistics
Matches: 186, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
157 2 0.01
158 182 0.98
159 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (158 bp):
TGATAATGCACCCATATGCATTTCAGCAATGACATCCTTTCATGCCAATAATGAACACATACACA
TTATTTTGTTATGCTGATAATGCACCCATATGCATTTCAACGTTGGAATCATGTCATGCCAATAA
TGCACTCATATGCATTATTCTTTTATGC
Found at i:650571 original size:61 final size:60
Alignment explanation
Indices: 650471--650602 Score: 183
Period size: 61 Copynumber: 2.2 Consensus size: 60
650461 TGGTTCTTCA
* * *
650471 GTATCGATACCCCTACCATGGTATCGATACTACTATACTATGGTACCGATACCCCCCTCTG
1 GTATTGATACCCCTACCATGGTATCGATACTACCATACTATGGTACCGATA-CCCCCTCCG
* * * * *
650532 GTATTGATACCCTTGCCATGGTATCGATACTACCATACTATGGTATCGATACCTCTTCCG
1 GTATTGATACCCCTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTCCG
650592 GTATTGATACC
1 GTATTGATACC
650603 AAAATTAGGT
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
60 17 0.27
61 46 0.73
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (60 bp):
GTATTGATACCCCTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTCCG
Found at i:650575 original size:22 final size:20
Alignment explanation
Indices: 650471--650584 Score: 86
Period size: 22 Copynumber: 5.5 Consensus size: 20
650461 TGGTTCTTCA
* *
650471 GTATCGATACCCCTACCATG
1 GTATCGATACCCATACTATG
*
650491 GTATCGATACTACTATACTATG
1 GTATCGATAC--CCATACTATG
* ** *
650513 GTACCGATACCC-CCCTCTG
1 GTATCGATACCCATACTATG
* * * *
650532 GTATTGATACCCTTGCCATG
1 GTATCGATACCCATACTATG
650552 GTATCGATACTACCATACTATG
1 GTATCGATAC--CCATACTATG
650574 GTATCGATACC
1 GTATCGATACC
650585 TCTTCCGGTA
Statistics
Matches: 71, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
19 14 0.20
20 24 0.34
22 33 0.46
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACCCATACTATG
Found at i:655132 original size:20 final size:20
Alignment explanation
Indices: 655109--655146 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
655099 TTCCCCTGTG
*
655109 GGGGGAATCGGTTCCCTCAA
1 GGGGGAATCGATTCCCTCAA
*
655129 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
655147 TGCACCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAA
Found at i:655132 original size:21 final size:20
Alignment explanation
Indices: 655086--655146 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
655076 CCAGAACCCC
*
655086 AGGGGGGTATCGATTCCC-CTG
1 AGGGGGG-ATCGATTCCCTC-A
* *
655107 TGGGGGGAATCGGTTCCCTCA
1 AGGGGGG-ATCGATTCCCTCA
655128 AGGGGGGATCGATTCCCTC
1 AGGGGGGATCGATTCCCTC
655147 TGCACCAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.33
21 21 0.64
22 1 0.03
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.23
Consensus pattern (20 bp):
AGGGGGGATCGATTCCCTCA
Found at i:658996 original size:20 final size:20
Alignment explanation
Indices: 658954--658996 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
658944 TTGTTTTCAT
* *
658954 TTTTTAATTTTGAAATATCA
1 TTTTTAATTTTGAAAAATAA
658974 TTTTTATATTTT-AAAAATAA
1 TTTTTA-ATTTTGAAAAATAA
658994 TTT
1 TTT
658997 CTCATAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTTTAATTTTGAAAAATAA
Found at i:662933 original size:29 final size:29
Alignment explanation
Indices: 662891--662949 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
662881 AGTCCATTAT
* *
662891 TCTTTTACTCAACAGTGTTTAACCTTTCA
1 TCTTTTACTCAACAGTATTTAACCATTCA
662920 TCTTTTACTCAACAGTATTTAACCATTCA
1 TCTTTTACTCAACAGTATTTAACCATTCA
662949 T
1 T
662950 ATAACTGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.05, T:0.44
Consensus pattern (29 bp):
TCTTTTACTCAACAGTATTTAACCATTCA
Found at i:663281 original size:46 final size:45
Alignment explanation
Indices: 663218--663325 Score: 110
Period size: 45 Copynumber: 2.4 Consensus size: 45
663208 CATGTTTATC
* * * * **
663218 ATGCA-CCATTATGCATTTCCAATTATAGCATTCTTTTATGCTGATA
1 ATGCACCCA-TATACATTT-CAACTATAGCATCCTTTCATGCCAATA
* *
663264 ATGCACCCATATACATTTCAGCTATGGCATCCTTTCATGCCAATA
1 ATGCACCCATATACATTTCAACTATAGCATCCTTTCATGCCAATA
*
663309 ATGAACCCATATACATT
1 ATGCACCCATATACATT
663326 ATTCTTTTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
45 36 0.69
46 13 0.25
47 3 0.06
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (45 bp):
ATGCACCCATATACATTTCAACTATAGCATCCTTTCATGCCAATA
Found at i:663378 original size:79 final size:79
Alignment explanation
Indices: 663247--663784 Score: 790
Period size: 79 Copynumber: 6.8 Consensus size: 79
663237 CAATTATAGC
*
663247 ATTCTTTTATGCTGATAATGCACCCATATACATTTCAGCTATGGCATCCTTTCATGCCAATAATG
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAATG
*
663312 AACCCATATACATT
66 AACCCATATGCATT
* * **
663326 ATTCTTTTATGTTGATAATGCACCCATATGCATTTCAGCTATGGTATCCTTTCATGATAATAATG
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAATG
*
663391 CACCCATATGCATT
66 AACCCATATGCATT
** * *
663405 ATTCTTTTATGCTGATAATTTACCCATATGCATTTTAGGC-ATGACATCCTTTCATGCCAATAAT
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCA-GCTATGGCATCCTTTCATGCCAATAAT
663469 GAACCCATATGCATT
65 GAACCCATATGCATT
* * * *
663484 TTTCTTTTATGCTGATAATGCACCCATATGCATTTTAGCTATGGTATCCTTTCATGCTAATAATG
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAATG
*
663549 CACCCATATGCATT
66 AACCCATATGCATT
* * *
663563 ATTCTTTTAGGCTGATAATCCACCCATATGCATTTCAGCCATGGCATCCTTTCATGCCAATAATG
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAATG
663628 AACCCATATGCATT
66 AACCCATATGCATT
* * * *
663642 ATTCTTTTATGCTGATAATGCACCCATATGTATTTCAACTATGGTATCCTTTCATGCTAATAATG
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAATG
*
663707 TACCCATATGCATT
66 AACCCATATGCATT
* * * * * *
663721 ATTCTTTTATACTGATAATGTACGCATATGCATTTCAGATATGACATCCTTTCATCCCAATAAT
1 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAAT
663785 ACACATATAT
Statistics
Matches: 408, Mismatches: 49, Indels: 4
0.89 0.11 0.01
Matches are distributed among these distances:
78 2 0.00
79 404 0.99
80 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (79 bp):
ATTCTTTTATGCTGATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAATAATG
AACCCATATGCATT
Found at i:663509 original size:34 final size:34
Alignment explanation
Indices: 663464--663676 Score: 120
Period size: 34 Copynumber: 5.6 Consensus size: 34
663454 TTTCATGCCA
*
663464 ATAATGAACCCATATGCATTTTTCTTTTATGCTG
1 ATAATGCACCCATATGCATTTTTCTTTTATGCTG
* *
663498 ATAATGCACCCATATGCATTTTAGCTATGGTATCCTTTCATGCTA
1 ATAATGCACCCATATGCA---T---T-T--T-T-CTTTTATGCTG
* *
663543 ATAATGCACCCATATGCATTATTCTTTTAGGCTG
1 ATAATGCACCCATATGCATTTTTCTTTTATGCTG
* * **
663577 ATAATCCACCCATATGCATTTCAGCCATGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTT------T----T-CTTTTATGCTG
* *
663622 ATAATGAACCCATATGCATTATTCTTTTATGCTG
1 ATAATGCACCCATATGCATTTTTCTTTTATGCTG
*
663656 ATAATGCACCCATATGTATTT
1 ATAATGCACCCATATGCATTT
663677 CAACTATGGT
Statistics
Matches: 135, Mismatches: 22, Indels: 44
0.67 0.11 0.22
Matches are distributed among these distances:
34 70 0.52
35 2 0.01
36 1 0.01
37 1 0.01
39 2 0.01
40 2 0.01
41 1 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 52 0.39
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.38
Consensus pattern (34 bp):
ATAATGCACCCATATGCATTTTTCTTTTATGCTG
Found at i:663556 original size:45 final size:44
Alignment explanation
Indices: 663487--663720 Score: 157
Period size: 45 Copynumber: 5.7 Consensus size: 44
663477 ATGCATTTTT
* *
663487 CTTTTATGCTGATAATGCACCCATATGCATTTTAGCTATGGTATC
1 CTTTCATGCTAATAATGCACCCATATGCATTTTA-CTATGGTATC
663532 CTTTCATGCTAATAATGCACCCATATGCA---T--TA---T-T-
1 CTTTCATGCTAATAATGCACCCATATGCATTTTACTATGGTATC
* * * * * * *
663566 CTTTTAGGCTGATAATCCACCCATATGCATTTCAGCCATGGCATC
1 CTTTCATGCTAATAATGCACCCATATGCATTTTA-CTATGGTATC
* *
663611 CTTTCATGCCAATAATGAACCCATATGCA---T--TA---T-T-
1 CTTTCATGCTAATAATGCACCCATATGCATTTTACTATGGTATC
* * * *
663645 CTTTTATGCTGATAATGCACCCATATGTATTTCAACTATGGTATC
1 CTTTCATGCTAATAATGCACCCATATGCATTT-TACTATGGTATC
*
663690 CTTTCATGCTAATAATGTACCCATATGCATT
1 CTTTCATGCTAATAATGCACCCATATGCATT
663721 ATTCTTTTAT
Statistics
Matches: 139, Mismatches: 28, Indels: 44
0.66 0.13 0.21
Matches are distributed among these distances:
34 49 0.35
35 2 0.01
36 1 0.01
39 3 0.02
40 3 0.02
42 1 0.01
43 1 0.01
44 2 0.01
45 77 0.55
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.37
Consensus pattern (44 bp):
CTTTCATGCTAATAATGCACCCATATGCATTTTACTATGGTATC
Found at i:664265 original size:17 final size:17
Alignment explanation
Indices: 664240--664273 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
664230 ATCGATACCC
*
664240 CTACCATGGTATCGATA
1 CTACCATGGTACCGATA
*
664257 CTACTATGGTACCGATA
1 CTACCATGGTACCGATA
664274 ACCCCTCCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (17 bp):
CTACCATGGTACCGATA
Found at i:667913 original size:2 final size:2
Alignment explanation
Indices: 667906--667939 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
667896 GATATGCATA
667906 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
667940 ATTTTAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:671530 original size:22 final size:22
Alignment explanation
Indices: 671502--671544 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
671492 TGGGAACTAA
671502 GTAGAGGTCGGGACATGTTTTC
1 GTAGAGGTCGGGACATGTTTTC
* *
671524 GTAGAGGTTGGGACGTGTTTT
1 GTAGAGGTCGGGACATGTTTT
671545 TGTATAGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.09, G:0.40, T:0.35
Consensus pattern (22 bp):
GTAGAGGTCGGGACATGTTTTC
Found at i:679910 original size:54 final size:54
Alignment explanation
Indices: 679820--680599 Score: 1019
Period size: 54 Copynumber: 14.4 Consensus size: 54
679810 TTATATGTAC
* *
679820 TATAGACACTAAGTGTGCAACCCCCGAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * *
679874 TATAGGCATTAAGTGTGCAACTCAC-ATAATTAATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACGA-AATTCATCATATGTTGATGAACAACCG
*
679928 TATAGGCACCAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * **
679982 TATATGCACTAAGAGTGCAACCCACGAAATTCATCATATGTTGATGAACAAAAG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * ** * * **
680036 TATAGGTACTAAGTGTTCAACCCACCTAATTCATCATATGTTGATAAATAATAG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * *
680090 TATAGGAACTAAGTGTACAACCCACGAAATTCATCATATATTGATGAACAACAG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* *
680144 TATAGGCACTAAGTGTGCAAACCACGAAATTCATCATATATTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * *
680198 TATATGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACTG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * *
680252 TTTATGCACTAAGTGTGGAACCCACGAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * ***
680306 TATAGGCACTAAGTTTGCAACACACGTAATTCATCATATGTTGATGAACAATAA
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * *
680360 TATAGGAACTAAGTGTACAACCCAC-ATAATTCATCATATGTTGATGAATAACCG
1 TATAGGCACTAAGTGTGCAACCCACGA-AATTCATCATATGTTGATGAACAACCG
*
680414 TATAGGCACTAAGTGTGCAACCCAC-ATAATACATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGA-AATTCATCATATGTTGATGAACAACCG
* * * * *
680468 TATAGGCACTACGTGTGCAACCTACGAAATTCATAATATGTTGATGAACGATCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * *
680522 TATAGGCACTAAGTGTGCAACCCACTG-AATTCATAATGTGTTTATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCAC-GAAATTCATCATATGTTGATGAACAACCG
* * *
680576 TATCGGCACTACGTGTGCACCCCA
1 TATAGGCACTAAGTGTGCAACCCA
680600 TAGAACTTAT
Statistics
Matches: 639, Mismatches: 82, Indels: 10
0.87 0.11 0.01
Matches are distributed among these distances:
53 1 0.00
54 635 0.99
55 3 0.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
Found at i:684159 original size:79 final size:80
Alignment explanation
Indices: 684068--684370 Score: 418
Period size: 79 Copynumber: 3.8 Consensus size: 80
684058 TCTTCTAGGT
* * **
684068 TGATAATACACCCATATGCATTTCAACGT-TGGCATCCTATCATGCCAATAATGCACACATACAC
1 TGATAATACACCCATATGCATTTCAACGTATGGCATCCTTTCATGCCAATAATGCACCCATATGC
*
684132 ATTATTCTATTATGC
66 ATTATTCTTTTATGC
* *
684147 TGATAATGCACCCATATGCATTTCAACGT-TGGCATCCTGTCATGCCAATAATGCACCCATATGC
1 TGATAATACACCCATATGCATTTCAACGTATGGCATCCTTTCATGCCAATAATGCACCCATATGC
*
684211 ATTATTCTTTTATGT
66 ATTATTCTTTTATGC
* * *
684226 TGATAATACACCCATATGCATTTC-A-GTTATTGCATCATTTCATGCCAATAATGAACCCATATG
1 TGATAATACACCCATATGCATTTCAACG-TATGGCATCCTTTCATGCCAATAATGCACCCATATG
*
684289 CATTATTCTTTTATAC
65 CATTATTCTTTTATGC
* * * *
684305 TGATAATGCACCCATATGCATTTCAGC-TATGGTATCCTTTCATGCTAATAATGCACCCATATGC
1 TGATAATACACCCATATGCATTTCAACGTATGGCATCCTTTCATGCCAATAATGCACCCATATGC
684369 AT
66 AT
684371 GTTGATAATG
Statistics
Matches: 199, Mismatches: 21, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 2 0.01
79 196 0.98
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.35
Consensus pattern (80 bp):
TGATAATACACCCATATGCATTTCAACGTATGGCATCCTTTCATGCCAATAATGCACCCATATGC
ATTATTCTTTTATGC
Found at i:684232 original size:34 final size:34
Alignment explanation
Indices: 684194--684326 Score: 113
Period size: 34 Copynumber: 3.6 Consensus size: 34
684184 TGTCATGCCA
*
684194 ATAATGCACCCATATGCATTATTCTTTTATGTTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
* **
684228 ATAATACACCCATATGCATTTCAGTTATTGCATCATTTCATGCCA
1 ATAATGCACCCATATG-----CA-TTATT-C-T--TTT-ATGCTG
* *
684273 ATAATGAACCCATATGCATTATTCTTTTATACTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
684307 ATAATGCACCCATATGCATT
1 ATAATGCACCCATATGCATT
684327 TCAGCTATGG
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
34 37 0.47
35 3 0.04
37 1 0.01
38 1 0.01
39 7 0.09
40 7 0.09
41 1 0.01
42 1 0.01
44 3 0.04
45 17 0.22
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (34 bp):
ATAATGCACCCATATGCATTATTCTTTTATGCTG
Found at i:684371 original size:23 final size:23
Alignment explanation
Indices: 684345--684393 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
684335 GGTATCCTTT
684345 CATGCTAATAATGCACCCATATG
1 CATGCTAATAATGCACCCATATG
* *
684368 CATGTTGATAATGCACCCATATG
1 CATGCTAATAATGCACCCATATG
684391 CAT
1 CAT
684394 TTTAGATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (23 bp):
CATGCTAATAATGCACCCATATG
Found at i:685085 original size:94 final size:94
Alignment explanation
Indices: 684870--685066 Score: 254
Period size: 94 Copynumber: 2.1 Consensus size: 94
684860 TGGTTCTTCA
* ** * * *
684870 GTATCGATACCCCTATCATGGCATCGA-ACAACTATACTATGGTACCGATACCCCCTCCGGTATC
1 GTATCGATACCCTTGCCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTCCGGTATC
**
684934 GATACCAATTTTAGATTCGATGTTACCTG
66 GATACCAAAATTAGATTCGATGTTACCTG
* **
684963 GTATCGATACCCTTGCCATGGTATCGATACTACCATACTATGGTATCGATACCCTTTCCGGTATC
1 GTATCGATACCCTTGCCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTCCGGTATC
* *
685028 GATACCAAAATTAGGTTTGATGTTA-CTGG
66 GATACCAAAATTAGATTCGATGTTACCT-G
685057 GTATCGATAC
1 GTATCGATAC
685067 TACCTCGTTG
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
93 25 0.28
94 64 0.72
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (94 bp):
GTATCGATACCCTTGCCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTCCGGTATC
GATACCAAAATTAGATTCGATGTTACCTG
Found at i:697968 original size:54 final size:54
Alignment explanation
Indices: 697811--698481 Score: 920
Period size: 54 Copynumber: 12.4 Consensus size: 54
697801 CTATGTGTAC
* *
697811 TATAGGCACTAAGTGTACAACCCACGAAATTCATCATATGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* *
697865 TATAGGCACTAAGTGTGC-ACTCAC-ATAATTCATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACGA-AATTCATCATATGTTGATGAACAACCG
* * *
697918 TATAGGCACTAAGTGTGCAACCCACAAAATTTATCATATGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * *
697972 TATATGCACTAAGTGCGCAACCCACGAAATTCATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* *
698026 TATAGGCACTAAGTGTGCAACCCATGAAATTCATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * *
698080 TATATGCACTAAGTGTACAACCCACGAAATTCATCATATTTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
*
698134 TATACGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * **
698188 TATAGGTACTAAGTGTGCAACCCACGTAATTCATCATATGTTGATGAACAATAG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * *
698242 TATAGGAACTAAGTGTACAACCCA-TAGAATTCATCATATGTTGATGAATAACCG
1 TATAGGCACTAAGTGTGCAACCCACGA-AATTCATCATATGTTGATGAACAACCG
* *
698296 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * **
698350 TATAGGAACTACGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGGCCG
1 TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
* * * *
698404 TATAGGCACTAAGTGTGCAACCCACTG-AATTTATAATGTGCTT-ATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCAC-GAAATTCATCATATG-TTGATGAACAACCG
* * * *
698458 TATTGGTACTATGTGTGCACCCCA
1 TATAGGCACTAAGTGTGCAACCCA
698482 TAGAATTTAT
Statistics
Matches: 551, Mismatches: 59, Indels: 14
0.88 0.09 0.02
Matches are distributed among these distances:
52 1 0.00
53 48 0.09
54 497 0.90
55 5 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCG
Found at i:701353 original size:2 final size:2
Alignment explanation
Indices: 701346--701376 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
701336 TATTGTACAT
701346 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
701377 CATTCCTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:701557 original size:29 final size:29
Alignment explanation
Indices: 701515--701573 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
701505 AGTCCATTAT
* *
701515 TCTTTTACTCAACAGTGTTTAACCTTTCA
1 TCTTTTACTCAACAGTATTTAACCATTCA
701544 TCTTTTACTCAACAGTATTTAACCATTCA
1 TCTTTTACTCAACAGTATTTAACCATTCA
701573 T
1 T
701574 ATAACTGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.05, T:0.44
Consensus pattern (29 bp):
TCTTTTACTCAACAGTATTTAACCATTCA
Found at i:701974 original size:79 final size:79
Alignment explanation
Indices: 701871--702144 Score: 363
Period size: 79 Copynumber: 3.5 Consensus size: 79
701861 CAATTATAGC
* * *
701871 ATTCTTCTAGGTTGATAATACACCCATATGCATTTCAACGTTGGCATCCTGTCATGCCAATAATG
1 ATTCTTTTATGTTGATAATGCACCCATATGCATTTCAACGTTGGCATCCTGTCATGCCAATAATG
* *
701936 CACACATACACATT
66 CACCCATACGCATT
* * * *
701950 ATTCTGTTATGTTGATAATGCACCCATATGCATTTCAACGTTGGAATCTTGTCATGCTAATAATG
1 ATTCTTTTATGTTGATAATGCACCCATATGCATTTCAACGTTGGCATCCTGTCATGCCAATAATG
*
702015 CACCCATATGCATT
66 CACCCATACGCATT
* * * *
702029 ACTCTTTTAT-TCTGATAATGTACCCATATGCATTTCAGC-TATGGCATCCTTTCATGCCAATAA
1 ATTCTTTTATGT-TGATAATGCACCCATATGCATTTCAACGT-TGGCATCCTGTCATGCCAATAA
* *
702092 TGAACCCATAGGCATT
64 TGCACCCATACGCATT
*
702108 ATTCTTTTATGCTGATAATGCACCCATATGCATTTCA
1 ATTCTTTTATGTTGATAATGCACCCATATGCATTTCA
702145 GATATGACAT
Statistics
Matches: 169, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 2 0.01
79 167 0.99
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (79 bp):
ATTCTTTTATGTTGATAATGCACCCATATGCATTTCAACGTTGGCATCCTGTCATGCCAATAATG
CACCCATACGCATT
Found at i:702835 original size:93 final size:94
Alignment explanation
Indices: 702615--702851 Score: 236
Period size: 93 Copynumber: 2.5 Consensus size: 94
702605 TGGTTCTTTA
* * *
702615 GTATCGATACCCCTACCATGGTATCGATAA-TACTATACTATGGTACCGATACCCGCCTCCGGTA
1 GTATCGATACCCTTA-CATGGTATCGA-AACTACCATACTATGGTATCGATACCCGCCTCCGGTA
**
702679 TCGATACCAATTTTAGATTCGATGTTACCTG
64 TCGATACCAAAATTAGATTCGATGTTACCTG
* * * * * *
702710 GTATCGATATCCTTGTCATGTTATCGATACTACCATACTATGGTATCGATA-CC-CTTCTGGTAT
1 GTATCGATACCCTT-ACATGGTATCGAAACTACCATACTATGGTATCGATACCCGCCTCCGGTAT
* *
702773 CGATACCAAAATTAGGTTCGATGTT-GCTGG
65 CGATACCAAAATTAGATTCGATGTTACCT-G
* *
702803 GTATCGATACCCTTACAAGGGTATGGAAACTACC-T-C-ATCGGTATCGATA
1 GTATCGATACCCTTAC-ATGGTATCGAAACTACCATACTAT-GGTATCGATA
702852 GTGATTGAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
90 2 0.02
91 11 0.09
92 4 0.03
93 57 0.48
94 3 0.03
95 41 0.35
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (94 bp):
GTATCGATACCCTTACATGGTATCGAAACTACCATACTATGGTATCGATACCCGCCTCCGGTATC
GATACCAAAATTAGATTCGATGTTACCTG
Found at i:704486 original size:4 final size:4
Alignment explanation
Indices: 704477--704501 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
704467 ACTAAAAACC
704477 ATTT ATTT ATTT ATTT ATTT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT A
704502 CCCAAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:706077 original size:55 final size:56
Alignment explanation
Indices: 706010--706630 Score: 803
Period size: 55 Copynumber: 11.2 Consensus size: 56
706000 CCCATTACCA
* * * * * * * *
706010 ATACAAAAATTCACTTC-CTTATTATGAGTTTCTT-ATGTTCGCACATATAGTTCCC
1 ATACAGAAATTCA-TACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* ** *
706065 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTACACACGGAGTTCCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
*
706121 ATATAGAAATTCATACACTTAGTATGAATTTCTTAATTTTT-CACACATAGTGCCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* *
706176 ATACGGAAATTCATACACTTAGTATGAATTTATTAATTTTTGCACACATAGTGCCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* * *
706232 ATACGGAAATTCATACACTTAGTATGAATTTCTTAA-TTTTGCACACATATTTCCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* *
706287 ATACGGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGAACACATAGTGCCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* * * * *
706343 ATACATAAATTCATACACTTAGTATTAATTTCTTAA-ATTTGTACACATAGTGCTC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* *
706398 ATACGGAAATTCATACACTTAGTATGAATTTCTTAA-TTTTGCACACATAGTGTCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* * *
706453 ATACTGAAATTCATACACTTAGTATGGATTTCTTAA-TTTTGCACACATAGTGCCT
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* * * * * *
706508 ATACGGAAATTCATACACTTAGTATGAATTTCTT-AGTTTTGTATACATAATACCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
* *
706563 ATATAGAAATTCATACACTTAGTTTGAATTTCTTAA-TTTTG-AGCACATAGTGCCC
1 ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCA-CACATAGTGCCC
*
706618 ATACGGAAATTCA
1 ATACAGAAATTCA
706631 CCATACATAT
Statistics
Matches: 504, Mismatches: 55, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
54 4 0.01
55 346 0.69
56 154 0.31
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.37
Consensus pattern (56 bp):
ATACAGAAATTCATACACTTAGTATGAATTTCTTAATTTTTGCACACATAGTGCCC
Found at i:706448 original size:28 final size:28
Alignment explanation
Indices: 706412--706503 Score: 69
Period size: 28 Copynumber: 3.3 Consensus size: 28
706402 GGAAATTCAT
*
706412 ACACTTAGTATGAATTTCTTAATTTTGC
1 ACACATAGTATGAATTTCTTAATTTTGC
* ** * * * ***
706440 ACACATAGTGTCCA-TACTGAAATTCAT
1 ACACATAGTATGAATTTCTTAATTTTGC
* *
706467 ACACTTAGTATGGATTTCTTAATTTTGC
1 ACACATAGTATGAATTTCTTAATTTTGC
706495 ACACATAGT
1 ACACATAGT
706504 GCCTATACGG
Statistics
Matches: 42, Mismatches: 21, Indels: 2
0.65 0.32 0.03
Matches are distributed among these distances:
27 17 0.40
28 25 0.60
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (28 bp):
ACACATAGTATGAATTTCTTAATTTTGC
Found at i:706499 original size:110 final size:111
Alignment explanation
Indices: 706027--706630 Score: 853
Period size: 111 Copynumber: 5.5 Consensus size: 111
706017 AATTCACTTC
* * * * * *
706027 CTTATTATGAGTTTCTT-ATGTTCGCACATATAGTTCCCATACAGAAATTCATACACTTAGTATG
1 CTTAGTATGAATTTCTTAAT-TTTGCACACATAGTGCCCATACGGAAATTCATACACTTAGTATG
* ** *
706091 AATTTCTTAATTTTTACACACGGAGTTCCCATA-TAGAAATTCATACA
65 AATTTCTTAATTTTTGCACACATAGTGCCCATACT-GAAATTCATACA
*
706138 CTTAGTATGAATTTCTTAATTTTTCACACATAGTGCCCATACGGAAATTCATACACTTAGTATGA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACACTTAGTATGA
* *
706203 ATTTATTAATTTTTGCACACATAGTGCCCATACGGAAATTCATACA
66 ATTTCTTAATTTTTGCACACATAGTGCCCATACTGAAATTCATACA
* *
706249 CTTAGTATGAATTTCTTAATTTTGCACACATATTTCCCATACGGAAATTCATACACTTAGTATGA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACACTTAGTATGA
*
706314 ATTTCTTAATTTTTGAACACATAGTGCCCATACAT-AAATTCATACA
66 ATTTCTTAATTTTTGCACACATAGTGCCCATAC-TGAAATTCATACA
* * * *
706360 CTTAGTATTAATTTCTTAAATTTGTACACATAGTGCTCATACGGAAATTCATACACTTAGTATGA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACACTTAGTATGA
*
706425 ATTTCTTAA-TTTTGCACACATAGTGTCCATACTGAAATTCATACA
66 ATTTCTTAATTTTTGCACACATAGTGCCCATACTGAAATTCATACA
* *
706470 CTTAGTATGGATTTCTTAATTTTGCACACATAGTGCCTATACGGAAATTCATACACTTAGTATGA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACACTTAGTATGA
* * * * *
706535 ATTTCTT-AGTTTTGTATACATAATACCCATA-TAGAAATTCATACA
66 ATTTCTTAATTTTTGCACACATAGTGCCCATACT-GAAATTCATACA
*
706580 CTTAGTTTGAATTTCTTAATTTTG-AGCACATAGTGCCCATACGGAAATTCA
1 CTTAGTATGAATTTCTTAATTTTGCA-CACATAGTGCCCATACGGAAATTCA
706631 CCATACATAT
Statistics
Matches: 445, Mismatches: 41, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
109 4 0.01
110 173 0.39
111 266 0.60
112 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (111 bp):
CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACACTTAGTATGA
ATTTCTTAATTTTTGCACACATAGTGCCCATACTGAAATTCATACA
Found at i:710301 original size:54 final size:54
Alignment explanation
Indices: 710211--710638 Score: 603
Period size: 54 Copynumber: 7.9 Consensus size: 54
710201 TTATTTGTAC
*
710211 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAA-CAG
1 TATAGGCACTAAGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAATC-G
* * *
710265 TATAGGCACTAAGTGTGCAACACACATAATTAATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAATCG
* *
710319 TATAGGCACTAAGTGTGCAACACACATAATTCATCATATGTTGATGAACAATCG
1 TATAGGCACTAAGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAATCG
* *
710373 TATAGGCACTAAGTGTGCAACCCA-AGGAATTCATCATATATTGATGGACAATCG
1 TATAGGCACTAAGTGTGCAACCCACA-GAATTCATCATATGTTGATGAACAATCG
* * * * *
710427 TATAGGCACTAAGTGTGTAACCCACGGAATTCATCATATGATGATGAACAACCA
1 TATAGGCACTAAGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAATCG
* * * *
710481 TGTAGGCACTAAGTGTGCAACCCACAGAATTAATCATATGTTGATGAACAACCA
1 TATAGGCACTAAGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAATCG
* *
710535 TATAGGTACTAAGTGTGCAACCCAC-GAAATTCATCATATGTTGATGAACAACCG
1 TATAGGCACTAAGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACAATCG
* *
710589 TATAGGCATTAAGTGTGCATCCCAC-GAAATTCATCATATGTTGATGAACA
1 TATAGGCACTAAGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACA
710639 TGTTAGAGTA
Statistics
Matches: 342, Mismatches: 28, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
53 2 0.01
54 339 0.99
55 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAATCG
Found at i:710340 original size:26 final size:26
Alignment explanation
Indices: 710311--710393 Score: 64
Period size: 26 Copynumber: 3.1 Consensus size: 26
710301 TATGTTGATG
710311 AACAATCGTATAGGCACTAAGTGTGC
1 AACAATCGTATAGGCACTAAGTGTGC
* ** *
710337 AACACA-CATA-ATTCATCATATGTTGATG-
1 AACA-ATCGTATAGGCA-C-TAAG-TG-TGC
710365 AACAATCGTATAGGCACTAAGTGTGC
1 AACAATCGTATAGGCACTAAGTGTGC
710391 AAC
1 AAC
710394 CCAAGGAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 16
0.63 0.12 0.25
Matches are distributed among these distances:
25 5 0.12
26 13 0.32
27 8 0.20
28 10 0.24
29 5 0.12
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (26 bp):
AACAATCGTATAGGCACTAAGTGTGC
Found at i:711756 original size:90 final size:88
Alignment explanation
Indices: 711647--711820 Score: 285
Period size: 89 Copynumber: 2.0 Consensus size: 88
711637 TCCCGAATAT
* *
711647 TTAATTTCAATTAATTAAATATATATTTAATTAATTTGAAATAATAAAATCACTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CACTAATATGATTAG
711712 GGTAACTTGGATATAAAAGGATTA
65 GGTAACTTGGATATAAAAGGATTA
* *
711736 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTTAAATAATAAAACCCTAATATGATTAG
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACACTAATATGATTAG
*
711801 GGTAACTTGGCTATAAAAGG
65 GGTAACTTGGATATAAAAGG
711821 GTGTGTTAGG
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
89 40 0.51
90 39 0.49
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (88 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACACTAATATGATTAGG
GTAACTTGGATATAAAAGGATTA
Found at i:717735 original size:54 final size:54
Alignment explanation
Indices: 717650--717969 Score: 428
Period size: 54 Copynumber: 5.9 Consensus size: 54
717640 TTATGTGTAC
* ** * *
717650 TATAGGAACTAAGTGTGCAACCCACTGAATTCACCATAGGTTGATGAACAACAG
1 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACAG
* * **
717704 TATAGGCACTAAGTGTGCAACACACATAATTCATCATATGTTGATGAACAATTG
1 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACAG
* * *
717758 TATAGGCACTAAGTGTGCAACCCA-AGGAATTCATCATATGTTGATGGACAACCG
1 TATAGGCACTAAGTGTGCAACCCACA-AAATTCATCATATGTTGATGAACAACAG
* * * *
717812 TATAGGCATTAAGTGTGCAACCCACAAAATTCATCATATGATGATGAACAATAA
1 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACAG
* * *
717866 TGTAGGCACTAAGTGTGCAACCCACAGAATTAATCATATGTTGATGAACAATC-G
1 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAA-CAG
*
717920 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTAATGAACA
1 TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACA
717970 TGTTAGAGTA
Statistics
Matches: 232, Mismatches: 31, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.00
54 230 0.99
55 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACAG
Found at i:717926 original size:162 final size:162
Alignment explanation
Indices: 717650--717961 Score: 473
Period size: 162 Copynumber: 1.9 Consensus size: 162
717640 TTATGTGTAC
** * *
717650 TATAGGAACTAAGTGTGCAACCCACTGAATTCACCATAGGTTGATGAACAACAGTATAGGCACTA
1 TATAGGAACTAAGTGTGCAACCCACAAAATTCACCATAGGATGATGAACAACAATATAGGCACTA
* * *
717715 AGTGTGCAACACACATAATTCATCATATGTTGATGAACAATTGTATAGGCACTAAGTGTGCAACC
66 AGTGTGCAACACACAGAATTAATCATATGTTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
*
717780 CA-AGGAATTCATCATATGTTGATGGACAACCG
131 CACA-AAATTCATCATATGTTGATGGACAACCG
* * * * * *
717812 TATAGGCATTAAGTGTGCAACCCACAAAATTCATCATATGATGATGAACAATAATGTAGGCACTA
1 TATAGGAACTAAGTGTGCAACCCACAAAATTCACCATAGGATGATGAACAACAATATAGGCACTA
*
717877 AGTGTGCAACCCACAGAATTAATCATATGTTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
66 AGTGTGCAACACACAGAATTAATCATATGTTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
717942 CACAAAATTCATCATATGTT
131 CACAAAATTCATCATATGTT
717962 AATGAACATG
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
162 133 0.99
163 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (162 bp):
TATAGGAACTAAGTGTGCAACCCACAAAATTCACCATAGGATGATGAACAACAATATAGGCACTA
AGTGTGCAACACACAGAATTAATCATATGTTGATGAACAATCGTATAGGCACTAAGTGTGCAACC
CACAAAATTCATCATATGTTGATGGACAACCG
Found at i:719093 original size:90 final size:88
Alignment explanation
Indices: 718979--719152 Score: 303
Period size: 90 Copynumber: 2.0 Consensus size: 88
718969 TCTCGAATAT
* *
718979 TTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCTCTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCTAATATGATTAG
719044 GGTAACTTGGATATAAAAGGATTA
65 GGTAACTTGGATATAAAAGGATTA
719068 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATTAG
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATTAG
*
719133 GGTAACTTGGCTATAAAAGG
65 GGTAACTTGGATATAAAAGG
719153 GTGTGTTAGG
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
89 40 0.49
90 41 0.51
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (88 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATTAGG
GTAACTTGGATATAAAAGGATTA
Found at i:719562 original size:54 final size:54
Alignment explanation
Indices: 719468--719603 Score: 164
Period size: 54 Copynumber: 2.5 Consensus size: 54
719458 CGGTCCAACA
* * *
719468 GAACAACCGTATATGCACTAAGTGTGCAACCCACATAATTCATCATATGTTGAT
1 GAACAACCGTATAGGCACTAAGTGTGCAACCCACAGAATTCATAATATGTTGAT
* ** * *
719522 GAACAACTGTATAGGCACTAAGTGTGCAACCCATGGAATTCATAATGTGTTTAT
1 GAACAACCGTATAGGCACTAAGTGTGCAACCCACAGAATTCATAATATGTTGAT
* * * *
719576 GAACGACCGTATCGACACTACGTGTGCA
1 GAACAACCGTATAGGCACTAAGTGTGCA
719604 CCCTAGAGAA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (54 bp):
GAACAACCGTATAGGCACTAAGTGTGCAACCCACAGAATTCATAATATGTTGAT
Found at i:720610 original size:12 final size:12
Alignment explanation
Indices: 720593--720627 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
720583 ATAGTGACAA
720593 TGATAATGATGT
1 TGATAATGATGT
*
720605 TGATAATGATAT
1 TGATAATGATGT
*
720617 TGATGATGATG
1 TGATAATGATG
720628 ATTATGATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.40
Consensus pattern (12 bp):
TGATAATGATGT
Found at i:720612 original size:18 final size:17
Alignment explanation
Indices: 720572--720626 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
720562 TGAACAGTGT
*
720572 TAATGATAATTATAGTGA
1 TAATGATAATGAT-GTGA
*
720590 CAATGATAATGATGTTGA
1 TAATGATAATGATG-TGA
*
720608 TAATGATATTGATGATGA
1 TAATGATAATGATG-TGA
720626 T
1 T
720627 GATTATGATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 1 0.03
18 30 0.97
ACGTcount: A:0.40, C:0.02, G:0.20, T:0.38
Consensus pattern (17 bp):
TAATGATAATGATGTGA
Found at i:720670 original size:2 final size:2
Alignment explanation
Indices: 720665--720744 Score: 146
Period size: 2 Copynumber: 41.0 Consensus size: 2
720655 TATATATATC
720665 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
720707 TG -G TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
720745 CACATATGTT
Statistics
Matches: 76, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
1 2 0.03
2 74 0.97
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
TG
Found at i:724290 original size:46 final size:46
Alignment explanation
Indices: 724240--724336 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 46
724230 GAGTCGAGCG
* * * * *
724240 TTCTACGCGGTCCTTCGGGATAATAATATGTGGTCTTTCGGGACAT
1 TTCTACGCAGACCTTCGGGACAATAATACGTGGTCCTTCGGGACAT
* *
724286 TTCTACGCAGACCTTTGGGACAATACTACGTGGTCCTTCGGGACAT
1 TTCTACGCAGACCTTCGGGACAATAATACGTGGTCCTTCGGGACAT
724332 TTCTA
1 TTCTA
724337 TGTGGCACTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.33
Consensus pattern (46 bp):
TTCTACGCAGACCTTCGGGACAATAATACGTGGTCCTTCGGGACAT
Found at i:724341 original size:23 final size:23
Alignment explanation
Indices: 724242--724330 Score: 79
Period size: 23 Copynumber: 3.9 Consensus size: 23
724232 GTCGAGCGTT
* *
724242 CTACGCGGTCCTTCGGGATAATA
1 CTACGTGGTCCTTCGGGACAATA
* * * * *
724265 ATATGTGGTCTTTCGGGACATTT
1 CTACGTGGTCCTTCGGGACAATA
** * *
724288 CTACGCAGACCTTTGGGACAATA
1 CTACGTGGTCCTTCGGGACAATA
724311 CTACGTGGTCCTTCGGGACA
1 CTACGTGGTCCTTCGGGACA
724331 TTTCTATGTG
Statistics
Matches: 46, Mismatches: 20, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (23 bp):
CTACGTGGTCCTTCGGGACAATA
Found at i:724497 original size:6 final size:6
Alignment explanation
Indices: 724464--724539 Score: 62
Period size: 6 Copynumber: 12.7 Consensus size: 6
724454 TAATGAGATG
* * * ** *
724464 TGATCA TGATAA TTATAA TGACAA TGATAA TGATGT TGATAA TGATAT
1 TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA
* * * *
724512 TGATGA TGATGA TGATGA TGATGA TGAT
1 TGATAA TGATAA TGATAA TGATAA TGAT
724540 GGTGTTGATG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.37
Consensus pattern (6 bp):
TGATAA
Found at i:724520 original size:3 final size:3
Alignment explanation
Indices: 724487--724540 Score: 65
Period size: 3 Copynumber: 18.0 Consensus size: 3
724477 TATAATGACA
* * *
724487 ATG ATA ATG ATG TTG ATA ATG AT- ATTG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG ATG
724532 ATG ATG ATG
1 ATG ATG ATG
724541 GTGTTGATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.95
4 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.28, T:0.37
Consensus pattern (3 bp):
ATG
Found at i:725916 original size:13 final size:14
Alignment explanation
Indices: 725878--725910 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
725868 TGTAATAGTA
725878 AATTATGACT-GTTT
1 AATT-TGACTAGTTT
725892 AATTTGACTAGTTT
1 AATTTGACTAGTTT
725906 AATTT
1 AATTT
725911 ATTAGTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (14 bp):
AATTTGACTAGTTT
Found at i:726088 original size:12 final size:12
Alignment explanation
Indices: 726071--726097 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
726061 CGTTAGTGAG
726071 TTTGATGTGACA
1 TTTGATGTGACA
726083 TTTGATGTGACA
1 TTTGATGTGACA
726095 TTT
1 TTT
726098 ATGACTCGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.48
Consensus pattern (12 bp):
TTTGATGTGACA
Found at i:734078 original size:17 final size:17
Alignment explanation
Indices: 734056--734098 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
734046 TAGTTTAATA
734056 AATGAACTAGATTGATG
1 AATGAACTAGATTGATG
* * * *
734073 AATGAATTAGTTTTATT
1 AATGAACTAGATTGATG
734090 AATGAACTA
1 AATGAACTA
734099 ACTTTATTAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.37
Consensus pattern (17 bp):
AATGAACTAGATTGATG
Found at i:734145 original size:51 final size:52
Alignment explanation
Indices: 734049--734150 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 52
734039 TAAGAGTTAG
** * * *
734049 TTTAATAAATGAACTAGATTGATGAATGAATTAGTTTTATTAATGAACTAAC
1 TTTAATAAATGAACTAGATACATGAATGAAGTAGTCTTATAAATGAACTAAC
* *
734101 TTTATTAAATG-ACTAGATACATGAATGAAGTAG-CTTACTAAATGATCTAA
1 TTTAATAAATGAACTAGATACATGAATGAAGTAGTCTTA-TAAATGAACTAA
734151 AGGCATAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 3 0.07
51 29 0.69
52 10 0.24
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (52 bp):
TTTAATAAATGAACTAGATACATGAATGAAGTAGTCTTATAAATGAACTAAC
Found at i:735177 original size:13 final size:14
Alignment explanation
Indices: 735149--735177 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
735139 GCCGGTAAAG
735149 AGGTGGGAAGTCAA
1 AGGTGGGAAGTCAA
735163 AGGTGGGAA-TCAA
1 AGGTGGGAAGTCAA
735176 AG
1 AG
735178 TGAGGTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.38, C:0.07, G:0.41, T:0.14
Consensus pattern (14 bp):
AGGTGGGAAGTCAA
Found at i:740967 original size:12 final size:13
Alignment explanation
Indices: 740942--740971 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
740932 TTAATTGAGA
740942 AAATTAAGAATTT
1 AAATTAAGAATTT
740955 AAATTAA-AATTT
1 AAATTAAGAATTT
740967 AAATT
1 AAATT
740972 TCCGATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (13 bp):
AAATTAAGAATTT
Found at i:742985 original size:34 final size:36
Alignment explanation
Indices: 742900--742988 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
742890 ATTCAAAGAT
* *
742900 TTTGTTTTAAGGGAAACTGTTTCAAGAGAGACAAAA
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
*
742936 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAT
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
* * *
742972 TTTATTTCAAGAAAAAC
1 TTTGTTTTAAGAGAAAC
742989 AATCTCAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (36 bp):
TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:742995 original size:36 final size:36
Alignment explanation
Indices: 742921--742996 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
742911 GGAAACTGTT
* * * **
742921 TCAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTC
1 TCAAGAGAGACAAAATTTATTTCAAGAAAAACAATC
*
742957 TCAAGAGAGACAAATTTTATTTCAAGAAAAACAATC
1 TCAAGAGAGACAAAATTTATTTCAAGAAAAACAATC
742993 TCAA
1 TCAA
742997 AGGTTTTTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.26
Consensus pattern (36 bp):
TCAAGAGAGACAAAATTTATTTCAAGAAAAACAATC
Found at i:743275 original size:84 final size:84
Alignment explanation
Indices: 742996--743539 Score: 521
Period size: 84 Copynumber: 6.6 Consensus size: 84
742986 AACAATCTCA
* * * * * *
742996 AAGGT-TTTTGTTGACAGATAACTCC-TCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGG
1 AAGGTCTTTGGTTGGCAGATAAC-CCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCTTGG
* * *
743059 AGCTGAGTGGAATCGAACTCG
64 AGCTGAGCGTAGTCGAACTCG
** * * * * * *
743080 GGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGTCGT-GAG
1 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAG
*
743140 CTGAGCGTA---GAACTCA
66 CTGAGCGTAGTCGAACTCG
* * * *
743156 AAGGTCTTTTGTTGGC--ACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAG
1 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAG
743219 CTGAGCGTAGTCGAACTCG
66 CTGAGCGTAGTCGAACTCG
* * *
743238 AAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAA
1 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGA
* * *
743303 GCTAAGTGTAATCGAACTCG
65 GCTGAGCGTAGTCGAACTCG
** * * * * *
743323 GGGGTC--T--TTGGCATATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGTCGTT-GA
1 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGA
*
743383 GCTGAGCGTAGTCGAACTCA
65 GCTGAGCGTAGTCGAACTCG
** * * **
743403 AAGGTCTTTTATTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGACATGCCTTGGAG
1 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAG
743468 CTGAGCGTAGTCGAACTCG
66 CTGAGCGTAGTCGAACTCG
* * *
743487 AAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT
1 AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGAT
743540 TTGTTTAAAA
Statistics
Matches: 371, Mismatches: 71, Indels: 37
0.77 0.15 0.08
Matches are distributed among these distances:
76 10 0.03
78 35 0.09
79 22 0.06
80 29 0.08
81 80 0.22
82 22 0.06
83 41 0.11
84 106 0.29
85 26 0.07
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (84 bp):
AAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAG
CTGAGCGTAGTCGAACTCG
Found at i:746927 original size:19 final size:19
Alignment explanation
Indices: 746903--746948 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
746893 AGTTAATGTG
*
746903 AATGCAAAGAAAATAACCA
1 AATGCAAAGAAAATAACAA
746922 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
746941 AATGCAAA
1 AATGCAAA
746949 ATGTCTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.65, C:0.13, G:0.11, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:748644 original size:12 final size:13
Alignment explanation
Indices: 748619--748648 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
748609 TTAATTGAGA
748619 AAATTAAGAATTT
1 AAATTAAGAATTT
748632 AAATTAA-AATTT
1 AAATTAAGAATTT
748644 AAATT
1 AAATT
748649 TCCGATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (13 bp):
AAATTAAGAATTT
Found at i:755017 original size:19 final size:19
Alignment explanation
Indices: 754986--755022 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
754976 CTGTTTTATA
754986 AAGTTCTTTTTTTATTTTC
1 AAGTTCTTTTTTTATTTTC
755005 AAGTT-TTTATTTTATTTT
1 AAGTTCTTT-TTTTATTTT
755023 TAAACATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.70
Consensus pattern (19 bp):
AAGTTCTTTTTTTATTTTC
Found at i:756789 original size:8 final size:8
Alignment explanation
Indices: 756776--756834 Score: 52
Period size: 8 Copynumber: 7.4 Consensus size: 8
756766 AATTTATAAG
756776 ATTTTATT
1 ATTTTATT
*
756784 ATTTTAAT
1 ATTTTATT
756792 ATTTTTATT
1 A-TTTTATT
*
756801 -TTTTGAGT
1 ATTTT-ATT
756809 ATTTT-TAT
1 ATTTTAT-T
756817 ATTTTATT
1 ATTTTATT
756825 -TTTTATT
1 ATTTTATT
756832 ATT
1 ATT
756835 ATTGATTCGT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
7 11 0.27
8 19 0.46
9 11 0.27
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (8 bp):
ATTTTATT
Found at i:756797 original size:17 final size:17
Alignment explanation
Indices: 756777--756834 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
756767 ATTTATAAGA
756777 TTTTATTATTTTAATAT
1 TTTTATTATTTTAATAT
*
756794 TTTTATT-TTTTGAGTAT
1 TTTTATTATTTT-AATAT
756811 TTTTA-TATTTT-AT-T
1 TTTTATTATTTTAATAT
756825 TTTTATTATT
1 TTTTATTATT
756835 ATTGATTCGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 6 0.17
15 5 0.14
16 5 0.14
17 20 0.56
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTATTATTTTAATAT
Found at i:770611 original size:26 final size:23
Alignment explanation
Indices: 770557--770609 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
770547 TCCATAAGCT
770557 TTCTTCTGCAAAGGGAAGAAGTC
1 TTCTTCTGCAAAGGGAAGAAGTC
* *
770580 TGCTTCTGCAAAGGGAAGAATTC
1 TTCTTCTGCAAAGGGAAGAAGTC
770603 TTCTTCT
1 TTCTTCT
770610 TCGGTTTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (23 bp):
TTCTTCTGCAAAGGGAAGAAGTC
Found at i:786256 original size:60 final size:60
Alignment explanation
Indices: 786122--786246 Score: 232
Period size: 60 Copynumber: 2.1 Consensus size: 60
786112 ATTATAAAAA
* *
786122 GAAGGCAAAGCATTACATGTGTAATGTATTTAGCATTTACTTACAAGTTGGTCGTGGGTT
1 GAAGGCAAAGCATTACATGTGTAATATATTTAGCATTTACTTAAAAGTTGGTCGTGGGTT
786182 GAAGGCAAAGCATTACATGTGTAATATATTTAGCATTTACTTAAAAGTTGGTCGTGGGTT
1 GAAGGCAAAGCATTACATGTGTAATATATTTAGCATTTACTTAAAAGTTGGTCGTGGGTT
786242 GAAGG
1 GAAGG
786247 GACATCATTA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (60 bp):
GAAGGCAAAGCATTACATGTGTAATATATTTAGCATTTACTTAAAAGTTGGTCGTGGGTT
Found at i:788943 original size:21 final size:21
Alignment explanation
Indices: 788918--788958 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
788908 CCCATAACAG
* *
788918 GGGTATCGGTACCCCTTCATA
1 GGGTATCGATACACCTTCATA
788939 GGGTATCGATACACCTTCAT
1 GGGTATCGATACACCTTCAT
788959 TAAATTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (21 bp):
GGGTATCGATACACCTTCATA
Found at i:789418 original size:21 final size:21
Alignment explanation
Indices: 789394--789455 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
789384 ATGTTTAATG
789394 AAAAAGATACCAATTGTTAAC
1 AAAAAGATACCAATTGTTAAC
* *
789415 AAAAGGATATCAATTG-T--C
1 AAAAAGATACCAATTGTTAAC
*
789433 AAAAAGATACTAATTGTTAAC
1 AAAAAGATACCAATTGTTAAC
789454 AA
1 AA
789456 TTGTTGGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
18 14 0.42
19 1 0.03
20 1 0.03
21 17 0.52
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26
Consensus pattern (21 bp):
AAAAAGATACCAATTGTTAAC
Found at i:789441 original size:18 final size:20
Alignment explanation
Indices: 789394--789451 Score: 66
Period size: 18 Copynumber: 3.0 Consensus size: 20
789384 ATGTTTAATG
789394 AAAAAGATACCAATTGTTAAC
1 AAAAAGATACCAATTGTT-AC
* *
789415 AAAAGGATATCAATTG-T-C
1 AAAAAGATACCAATTGTTAC
*
789433 AAAAAGATACTAATTGTTA
1 AAAAAGATACCAATTGTTA
789452 ACAATTGTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 14 0.47
19 1 0.03
20 1 0.03
21 14 0.47
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (20 bp):
AAAAAGATACCAATTGTTAC
Found at i:791810 original size:16 final size:17
Alignment explanation
Indices: 791761--791810 Score: 50
Period size: 20 Copynumber: 2.8 Consensus size: 17
791751 TTGCAGCCAA
791761 AGTGTATGGATACACTGC
1 AGTGTATGGATACAC-GC
791779 AGGGTGTATTGG-TACAC-C
1 A--GTGTA-TGGATACACGC
791797 AGTGTATGGATACA
1 AGTGTATGGATACA
791811 TTTATAGGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
15 3 0.11
16 9 0.32
18 3 0.11
20 10 0.36
21 3 0.11
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (17 bp):
AGTGTATGGATACACGC
Found at i:791829 original size:36 final size:36
Alignment explanation
Indices: 791761--791829 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
791751 TTGCAGCCAA
* *
791761 AGTGTATGGATACACTGCAGGGTGTATTGGTACACC
1 AGTGTATGGATACACTACAGGGTGTATCGGTACACC
* *
791797 AGTGTATGGATACATTTATAGGG-GTATCGGTAC
1 AGTGTATGGATACA-CTACAGGGTGTATCGGTAC
791830 CCTTTTTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 23 0.82
37 5 0.18
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (36 bp):
AGTGTATGGATACACTACAGGGTGTATCGGTACACC
Found at i:792170 original size:20 final size:21
Alignment explanation
Indices: 792142--792181 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
792132 ATGTTTAATG
*
792142 AAAAAGATA-CTATTGTTAAC
1 AAAAAGATATCAATTGTTAAC
*
792162 AAAAGGATATCAATTGTTAA
1 AAAAAGATATCAATTGTTAA
792182 AAAGATACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.30
Consensus pattern (21 bp):
AAAAAGATATCAATTGTTAAC
Found at i:792188 original size:18 final size:18
Alignment explanation
Indices: 792142--792194 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
792132 ATGTTTAATG
*
792142 AAAAAGATACTATTGTTA
1 AAAAAGATACAATTGTTA
792160 ACAAAAGGATATCAATTGTT-
1 A-AAAA-GATA-CAATTGTTA
792180 AAAAAGATACCAATT
1 AAAAAGATA-CAATT
792195 ATTACCATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 10 0.33
19 8 0.27
20 5 0.17
21 7 0.23
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.28
Consensus pattern (18 bp):
AAAAAGATACAATTGTTA
Found at i:794710 original size:36 final size:36
Alignment explanation
Indices: 794647--794718 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
794637 TTGTAGCCAG
*
794647 AGTGTATGGATACACTGCAGGGTGTATCAGTACACC
1 AGTGTATGGATACACTGCAGGGTGTATCAATACACC
794683 AGTGTATGGATACACT-CATAGGG-GTATCAATACACC
1 AGTGTATGGATACACTGC--AGGGTGTATCAATACACC
794719 TTTTTGCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 1 0.03
36 28 0.85
37 4 0.12
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (36 bp):
AGTGTATGGATACACTGCAGGGTGTATCAATACACC
Found at i:795030 original size:21 final size:21
Alignment explanation
Indices: 795006--795046 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
794996 ATGTTTAATG
*
795006 AAAAAGATACCAGTTGTTAAC
1 AAAAAGATACCAATTGTTAAC
* *
795027 AAAAGGATATCAATTGTTAA
1 AAAAAGATACCAATTGTTAA
795047 AAATAAATCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.27
Consensus pattern (21 bp):
AAAAAGATACCAATTGTTAAC
Done.