Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008803.1 Hibiscus syriacus cultivar Beakdansim tig00111954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1826237
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 9
Found at i:205358 original size:8 final size:8
Alignment explanation
Indices: 205331--205385 Score: 73
Period size: 8 Copynumber: 7.4 Consensus size: 8
205321 TATTATATTT
205331 TTTATATA
1 TTTATATA
*
205339 TCTAT-T-
1 TTTATATA
205345 TTTATATA
1 TTTATATA
205353 TTTATATA
1 TTTATATA
205361 TTTATATA
1 TTTATATA
205369 TTTAT-TA
1 TTTATATA
205376 TTTAT-TA
1 TTTATATA
205383 TTT
1 TTT
205386 TGGATTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
6 4 0.09
7 14 0.33
8 25 0.58
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATATA
Found at i:205915 original size:2 final size:2
Alignment explanation
Indices: 205908--205939 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
205898 ACCTAACATC
205908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
205940 TTACTTTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:206002 original size:11 final size:10
Alignment explanation
Indices: 205988--206034 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
205978 TTTTTCTCTA
205988 TATTTTTATTT
1 TATTTTTA-TT
205999 TATTTTTATT
1 TATTTTTATT
*
206009 CATTTTGT-TT
1 TATTTT-TATT
*
206019 TGTTTTTATT
1 TATTTTTATT
206029 TATTTT
1 TATTTT
206035 ACCATGTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.67
11 9 0.30
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (10 bp):
TATTTTTATT
Found at i:206019 original size:20 final size:20
Alignment explanation
Indices: 205991--206035 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
205981 TTCTCTATAT
205991 TTTTATTTTATTTTTATTCA
1 TTTTATTTTATTTTTATTCA
* * *
206011 TTTTGTTTTGTTTTTATTTA
1 TTTTATTTTATTTTTATTCA
206031 TTTTA
1 TTTTA
206036 CCATGTTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (20 bp):
TTTTATTTTATTTTTATTCA
Found at i:207099 original size:14 final size:14
Alignment explanation
Indices: 207080--207109 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
207070 TAATTTTAAG
*
207080 TTATTCAAGTCGAT
1 TTATTCAAGTCAAT
207094 TTATTCAAGTCAAT
1 TTATTCAAGTCAAT
207108 TT
1 TT
207110 GAATTATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (14 bp):
TTATTCAAGTCAAT
Found at i:207746 original size:2 final size:2
Alignment explanation
Indices: 207739--207764 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
207729 AAAGAATAGA
207739 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
207765 TACATGGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:209005 original size:52 final size:52
Alignment explanation
Indices: 208927--209032 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
208917 TTTTAGAATT
208927 AAAATGATACTTGGGGCATTTTTATGGAATTAACTCTATTGTTTCATGAAGG
1 AAAATGATACTTGGGGCATTTTTATGGAATTAACTCTATTGTTTCATGAAGG
208979 AAAATGATACTTGGGGCATTTTTATGGAATTAACTCTATTGTTTCATGAAGG
1 AAAATGATACTTGGGGCATTTTTATGGAATTAACTCTATTGTTTCATGAAGG
209031 AA
1 AA
209033 TTTGAGTGGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (52 bp):
AAAATGATACTTGGGGCATTTTTATGGAATTAACTCTATTGTTTCATGAAGG
Found at i:212792 original size:18 final size:18
Alignment explanation
Indices: 212754--212789 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
212744 ATATATATAT
*
212754 ATAATAATAACATGAATA
1 ATAAAAATAACATGAATA
212772 ATAAAAATAA-ATGAATA
1 ATAAAAATAACATGAATA
212789 A
1 A
212790 ATATCCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (18 bp):
ATAAAAATAACATGAATA
Found at i:219074 original size:24 final size:24
Alignment explanation
Indices: 219053--219165 Score: 181
Period size: 24 Copynumber: 4.7 Consensus size: 24
219043 AACTCGTATA
*
219053 AATTGCACCGAAGTGCCGCGTAGG
1 AATTGCATCGAAGTGCCGCGTAGG
*
219077 AATTGCATCGAAGTGTCGCGTAGG
1 AATTGCATCGAAGTGCCGCGTAGG
219101 AATTGCATCGAAGTGCCGCGTAGG
1 AATTGCATCGAAGTGCCGCGTAGG
* *
219125 AATTGCACCGAAGTGCCGTGTAGG
1 AATTGCATCGAAGTGCCGCGTAGG
*
219149 AATTACATCGAAGTGCC
1 AATTGCATCGAAGTGCC
219166 ACATATAAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 82 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (24 bp):
AATTGCATCGAAGTGCCGCGTAGG
Found at i:219190 original size:23 final size:23
Alignment explanation
Indices: 219164--219256 Score: 107
Period size: 23 Copynumber: 4.0 Consensus size: 23
219154 CATCGAAGTG
* *
219164 CCACATATAAATATCCCGAAGGA
1 CCACATAGAAATGTCCCGAAGGA
* *
219187 CCACATA-ATATTGTCTCGAAGGA
1 CCACATAGA-AATGTCCCGAAGGA
*
219210 CCGCATAGAAATGTCCCGAAGGA
1 CCACATAGAAATGTCCCGAAGGA
* *
219233 CCACGTAGAATTGTCCCGAAGGA
1 CCACATAGAAATGTCCCGAAGGA
219256 C
1 C
219257 TGCGTAGAAC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
22 1 0.02
23 57 0.97
24 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.18
Consensus pattern (23 bp):
CCACATAGAAATGTCCCGAAGGA
Found at i:219227 original size:46 final size:46
Alignment explanation
Indices: 219167--219265 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 46
219157 CGAAGTGCCA
* *
219167 CATATAAATATCCCGAAGGACCACATA-ATATTGTCTCGAAGGACCG
1 CATAGAAATATCCCGAAGGACCACATAGA-ATTGTCCCGAAGGACCG
* * *
219213 CATAGAAATGTCCCGAAGGACCACGTAGAATTGTCCCGAAGGACTG
1 CATAGAAATATCCCGAAGGACCACATAGAATTGTCCCGAAGGACCG
*
219259 CGTAGAA
1 CATAGAA
219266 CCCTCGACTC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.19
Consensus pattern (46 bp):
CATAGAAATATCCCGAAGGACCACATAGAATTGTCCCGAAGGACCG
Found at i:219262 original size:23 final size:23
Alignment explanation
Indices: 219177--219265 Score: 99
Period size: 23 Copynumber: 3.9 Consensus size: 23
219167 CATATAAATA
* *
219177 TCCCGAAGGACCACATA-ATATTG
1 TCCCGAAGGACCGCGTAGA-ATTG
* * *
219200 TCTCGAAGGACCGCATAGAAATG
1 TCCCGAAGGACCGCGTAGAATTG
*
219223 TCCCGAAGGACCACGTAGAATTG
1 TCCCGAAGGACCGCGTAGAATTG
*
219246 TCCCGAAGGACTGCGTAGAA
1 TCCCGAAGGACCGCGTAGAA
219266 CCCTCGACTC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
23 55 0.98
24 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.18
Consensus pattern (23 bp):
TCCCGAAGGACCGCGTAGAATTG
Found at i:220940 original size:2 final size:2
Alignment explanation
Indices: 220933--221100 Score: 256
Period size: 2 Copynumber: 86.0 Consensus size: 2
220923 AAAAATTCTT
*
220933 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
220975 TA TA T- TA T- TA GT- TA AA T- TT TT TA -A TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
221013 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
221055 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
221097 TA TA
1 TA TA
221101 ATGTACTAGA
Statistics
Matches: 155, Mismatches: 5, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
1 5 0.03
2 149 0.96
3 1 0.01
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.52
Consensus pattern (2 bp):
TA
Found at i:221493 original size:38 final size:40
Alignment explanation
Indices: 221426--221504 Score: 108
Period size: 38 Copynumber: 2.0 Consensus size: 40
221416 ACAAATCGGT
* * *
221426 TTTTGAAAATATATATATATATTATATAGTTTTGAAAATA
1 TTTTGAAAATATAAATATATATAAAATAGTTTTGAAAATA
*
221466 TTTTGAAAA-A-AAATATATATAAAATAGTTTTGAATATA
1 TTTTGAAAATATAAATATATATAAAATAGTTTTGAAAATA
221504 T
1 T
221505 ATATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 25 0.71
39 1 0.03
40 9 0.26
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (40 bp):
TTTTGAAAATATAAATATATATAAAATAGTTTTGAAAATA
Found at i:221498 original size:27 final size:26
Alignment explanation
Indices: 221460--221513 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
221450 TATAGTTTTG
221460 AAAATATTTTGAAAAAAAATATATAT
1 AAAATATTTTGAAAAAAAATATATAT
* * *
221486 AAAATAGTTTTGAATATATATATATAT
1 AAAATA-TTTTGAAAAAAAATATATAT
221513 A
1 A
221514 TATATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (26 bp):
AAAATATTTTGAAAAAAAATATATAT
Found at i:221504 original size:2 final size:2
Alignment explanation
Indices: 221499--221590 Score: 127
Period size: 2 Copynumber: 46.5 Consensus size: 2
221489 ATAGTTTTGA
221499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
221541 AT AT AT A- AA AT AT AGT TT GA- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT
221583 AT AT -T AT A
1 AT AT AT AT A
221591 GTTTTGAAAA
Statistics
Matches: 82, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
1 3 0.04
2 78 0.95
3 1 0.01
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:221605 original size:25 final size:25
Alignment explanation
Indices: 221575--221625 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
221565 ATATATATAT
221575 ATATATATATATTATAGTTTTGAAAAC
1 ATATATA-ATA-TATAGTTTTGAAAAC
*
221602 ATATATAATATATAGTTTTTAAAA
1 ATATATAATATATAGTTTTGAAAA
221626 AATGTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.57
26 3 0.13
27 7 0.30
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (25 bp):
ATATATAATATATAGTTTTGAAAAC
Found at i:221627 original size:27 final size:27
Alignment explanation
Indices: 221575--221626 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
221565 ATATATATAT
*
221575 ATATATATATATTATAGTTTTGAAAAC
1 ATATATATATATTATAGTTTTAAAAAC
221602 ATATATA-ATA-TATAGTTTTTAAAAA
1 ATATATATATATTATAG-TTTTAAAAA
221627 ATGTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 11 0.48
27 7 0.30
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (27 bp):
ATATATATATATTATAGTTTTAAAAAC
Found at i:221730 original size:37 final size:36
Alignment explanation
Indices: 221591--221734 Score: 159
Period size: 38 Copynumber: 3.9 Consensus size: 36
221581 ATATATTATA
*
221591 GTTTTGAAAACATATATAATATATAGTTTTTAAAAAAT
1 GTTTTG-AAA-ATATATAATATATAGTTTTAAAAAAAT
* * *
221629 GTTTTAAAAATATATATAGTATATAGTTTTGGAAAATAT
1 GTTTTGAAAATATATA-A-TATATAGTTTT-AAAAAAAT
221668 -TTTTGAAAATATAT--TATATAGTTTTAAAAACAAT
1 GTTTTGAAAATATATAATATATAGTTTTAAAAA-AAT
* *
221702 GATTTGAAAATATATAATATATAATTTTAAAAA
1 GTTTTGAAAATATATAATATATAGTTTTAAAAA
221735 TGATTTTTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
33 4 0.04
34 13 0.14
35 13 0.14
36 7 0.08
37 19 0.21
38 29 0.32
39 6 0.07
ACGTcount: A:0.48, C:0.01, G:0.08, T:0.42
Consensus pattern (36 bp):
GTTTTGAAAATATATAATATATAGTTTTAAAAAAAT
Found at i:221795 original size:21 final size:21
Alignment explanation
Indices: 221753--221796 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
221743 TATATTAATG
*
221753 TTAATATTATTTATTATTTTA
1 TTAATATTATTTATTATATTA
*
221774 TTAATATATATTTTTTA-ATTA
1 TTAATAT-TATTTATTATATTA
221795 TT
1 TT
221797 TTTTCTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTAATATTATTTATTATATTA
Found at i:223041 original size:3 final size:3
Alignment explanation
Indices: 223033--223070 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
223023 TTTTCTTTAT
223033 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
223071 TTCTTCTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:223133 original size:23 final size:22
Alignment explanation
Indices: 223114--223155 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
223104 CCTTTTTCCT
223114 TTCAT-TTATTTAACATTTTTC
1 TTCATCTTATTTAACATTTTTC
*
223135 TTCTTCTTATTTAACATTTTT
1 TTCATCTTATTTAACATTTTT
223156 GACTTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (22 bp):
TTCATCTTATTTAACATTTTTC
Found at i:223967 original size:25 final size:25
Alignment explanation
Indices: 223939--223989 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
223929 AAATTGGTGA
223939 CTTGATGTTAACAACCGTTAACAGG
1 CTTGATGTTAACAACCGTTAACAGG
223964 CTTGATGTTAACAACCGTTAACAGG
1 CTTGATGTTAACAACCGTTAACAGG
223989 C
1 C
223990 GTGACAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
CTTGATGTTAACAACCGTTAACAGG
Found at i:225790 original size:138 final size:136
Alignment explanation
Indices: 225523--225804 Score: 359
Period size: 138 Copynumber: 2.1 Consensus size: 136
225513 ATCATAGGTT
* ** * *
225523 CATTTCGACATAAATTGTATATAATGGTTATCGATCGATTTTGTGTAATGCATAACGATGCATTT
1 CATTTCGACATAAATTATATATAAAAGTTATAGATCGATTTTGTGTAATGCATAACGATGAATTT
* * *
225588 TCGTATCAGTACTATATGTAATTTCGGCACTAAATGTGAAATCATGGTATTCATAATTAGTTTGT
66 TCGTATCAGTACTATATGTAATTTCGGCACT-AATGTGAAATCATGGAATTCAAAATGAGTTTGT
*
225653 TAATTAC
130 GAATTAC
* * * * *
225660 CATTTCGATATACAATTATGTATAAAAGTTATAGATCGATTTTGTTTAATGCATAATGGTGAATT
1 CATTTCGACATA-AATTATATATAAAAGTTATAGATCGATTTTGTGTAATGCATAACGATGAATT
* * *
225725 TTCGTATCAGTACTATATGTACTTTCGGTACT-ATGTGTACATCCATGGAATTCAAAATGAGTTT
65 TTCGTATCAGTACTATATGTAATTTCGGCACTAATGTG-AAAT-CATGGAATTCAAAATGAGTTT
*
225789 GTGAATTTC
128 GTGAATTAC
225798 CATTTCG
1 CATTTCG
225805 GCACTTCGGT
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
136 5 0.04
137 14 0.11
138 105 0.85
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.40
Consensus pattern (136 bp):
CATTTCGACATAAATTATATATAAAAGTTATAGATCGATTTTGTGTAATGCATAACGATGAATTT
TCGTATCAGTACTATATGTAATTTCGGCACTAATGTGAAATCATGGAATTCAAAATGAGTTTGTG
AATTAC
Found at i:228095 original size:73 final size:73
Alignment explanation
Indices: 228012--228147 Score: 245
Period size: 73 Copynumber: 1.9 Consensus size: 73
228002 CCCATAACAT
* *
228012 TACATAATATTTTATCAGATGAACATATGGTCCATAGCATTATAATATTCAACATGCAAACATAT
1 TACATAATATTTTATCAGATGAACATATGGCCCATAACATTATAATATTCAACATGCAAACATAT
228077 AGGGCCCG
66 AGGGCCCG
*
228085 TACATAATATTTTATCAGATGAACATATGGCCCATAACATTATAATATTCAACATGTAAACAT
1 TACATAATATTTTATCAGATGAACATATGGCCCATAACATTATAATATTCAACATGCAAACAT
228148 GTAGTGCTTG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (73 bp):
TACATAATATTTTATCAGATGAACATATGGCCCATAACATTATAATATTCAACATGCAAACATAT
AGGGCCCG
Found at i:228132 original size:38 final size:38
Alignment explanation
Indices: 228002--228133 Score: 116
Period size: 38 Copynumber: 3.5 Consensus size: 38
227992 CATAGTAGGA
228002 CCCATAACATTACATAATATTTTATCAGATGAACATATGG
1 CCCATAACATT--ATAATATTTTATCAGATGAACATATGG
* * * *
228042 TCCATAGCATTATAATA-TTCA--ACATGCAAACATATAGGG
1 CCCATAACATTATAATATTTTATCAGATG--AACATAT--GG
*
228081 CCCGT-AC---ATAATATTTTATCAGATGAACATATGG
1 CCCATAACATTATAATATTTTATCAGATGAACATATGG
228115 CCCATAACATTATAATATT
1 CCCATAACATTATAATATT
228134 CAACATGTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 24
0.68 0.10 0.23
Matches are distributed among these distances:
34 6 0.08
35 12 0.17
36 10 0.14
37 10 0.14
38 19 0.27
39 5 0.07
40 9 0.13
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (38 bp):
CCCATAACATTATAATATTTTATCAGATGAACATATGG
Found at i:235812 original size:6 final size:6
Alignment explanation
Indices: 235803--235835 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
235793 AAATATTCAA
*
235803 AAAAAA AAAAAC AAAAAC AAAAAC AAAAAC AAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAA
235836 TAATTCAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:236235 original size:16 final size:16
Alignment explanation
Indices: 236214--236245 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
236204 AATAAATAAG
236214 CGAACATAAACGAACA
1 CGAACATAAACGAACA
236230 CGAACATAAACGAACA
1 CGAACATAAACGAACA
236246 ATTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.25, G:0.12, T:0.06
Consensus pattern (16 bp):
CGAACATAAACGAACA
Found at i:236336 original size:16 final size:16
Alignment explanation
Indices: 236307--236379 Score: 89
Period size: 16 Copynumber: 4.7 Consensus size: 16
236297 CGTTCATTTA
236307 ATAAA-TAA-ACGAAC
1 ATAAACTAACACGAAC
236321 ATAAACTAACACGAAC
1 ATAAACTAACACGAAC
*
236337 ATAAA-TAAACACGAAT
1 ATAAACT-AACACGAAC
*
236353 ATAAACGAACACGAAC
1 ATAAACTAACACGAAC
*
236369 ATAAACGAACA
1 ATAAACTAACA
236380 TAAACGTTGG
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
14 5 0.10
15 4 0.08
16 43 0.83
ACGTcount: A:0.60, C:0.19, G:0.08, T:0.12
Consensus pattern (16 bp):
ATAAACTAACACGAAC
Found at i:236357 original size:32 final size:30
Alignment explanation
Indices: 236307--236373 Score: 98
Period size: 32 Copynumber: 2.2 Consensus size: 30
236297 CGTTCATTTA
*
236307 ATAAATAAACGAACATAAACTAACACGAAC
1 ATAAATAAACGAACATAAACGAACACGAAC
*
236337 ATAAATAAACACGAATATAAACGAACACGAAC
1 ATAAAT-AA-ACGAACATAAACGAACACGAAC
236369 ATAAA
1 ATAAA
236374 CGAACATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 6 0.18
31 2 0.06
32 25 0.76
ACGTcount: A:0.61, C:0.18, G:0.07, T:0.13
Consensus pattern (30 bp):
ATAAATAAACGAACATAAACGAACACGAAC
Found at i:240256 original size:24 final size:24
Alignment explanation
Indices: 240221--240282 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
240211 TATTATGTTA
*
240221 AACATAAATGAACGCACATAAACG
1 AACATAACTGAACGCACATAAACG
*
240245 AACATAACTGAACGCATATAAACG
1 AACATAACTGAACGCACATAAACG
*
240269 AACATAACCGAACG
1 AACATAACTGAACG
240283 TTCACGAACG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.52, C:0.23, G:0.13, T:0.13
Consensus pattern (24 bp):
AACATAACTGAACGCACATAAACG
Found at i:240303 original size:34 final size:34
Alignment explanation
Indices: 240225--240305 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
240215 ATGTTAAACA
*
240225 TAAATGAACGCACATAAACGAACATAACTGAACG
1 TAAATGAACGAACATAAACGAACATAACTGAACG
* * * * * *
240259 CATATAAACGAACATAACCGAACGTTCAC-GAACG
1 TAAATGAACGAACATAAACGAAC-ATAACTGAACG
240293 TAAATGAACGAAC
1 TAAATGAACGAAC
240306 GAGACCTATG
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
34 33 0.92
35 3 0.08
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.15
Consensus pattern (34 bp):
TAAATGAACGAACATAAACGAACATAACTGAACG
Found at i:250435 original size:34 final size:35
Alignment explanation
Indices: 250392--250461 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
250382 AAGAAATAAG
* *
250392 TTTATGGGCCC-GCTTTTAATTTAGTTTATTAATA
1 TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
250426 TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
1 TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
250461 T
1 T
250462 AGTTTTTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 11 0.33
35 22 0.67
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (35 bp):
TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
Found at i:255297 original size:17 final size:17
Alignment explanation
Indices: 255256--255327 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
255246 ATTCACGCAT
255256 CTAGTTCATTGAA-TAAA
1 CTAGTTCATT-AATTAAA
*
255273 GTTAGTTCATTAATTAAA
1 -CTAGTTCATTAATTAAA
* *
255291 CTAGTTCATTCATCAAA
1 CTAGTTCATTAATTAAA
* *
255308 CTAGTTCATTTATTAGA
1 CTAGTTCATTAATTAAA
255325 CTA
1 CTA
255328 ACTCTTAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
17 33 0.72
18 13 0.28
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (17 bp):
CTAGTTCATTAATTAAA
Found at i:261312 original size:85 final size:85
Alignment explanation
Indices: 261194--261354 Score: 252
Period size: 85 Copynumber: 1.9 Consensus size: 85
261184 TGTAAGTCAT
** * *
261194 ACAAATGTGTGTCATCTTCATTTATGATGGGGGCTTCAATGACACGTAATGTA-AGTCATACATG
1 ACAAATGTGTGTCATCTTCATTTATGAAAGGGGCTTCAATGACACGCAATG-AGAGTCATAAATG
261258 CGTGTCATAAATTTATGACAC
65 CGTGTCATAAATTTATGACAC
* *
261279 ACAAATGTGTGTCATCTTCATTTATGAAAGGGGCTTCAATGACGCGCAATGAGCGTCATAAATGC
1 ACAAATGTGTGTCATCTTCATTTATGAAAGGGGCTTCAATGACACGCAATGAGAGTCATAAATGC
261344 GTGTCATAAAT
66 GTGTCATAAAT
261355 GCATGTCATA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
84 1 0.01
85 68 0.99
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (85 bp):
ACAAATGTGTGTCATCTTCATTTATGAAAGGGGCTTCAATGACACGCAATGAGAGTCATAAATGC
GTGTCATAAATTTATGACAC
Found at i:261349 original size:13 final size:13
Alignment explanation
Indices: 261333--261364 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
261323 CGCAATGAGC
*
261333 GTCATAAATGCGT
1 GTCATAAATGCAT
261346 GTCATAAATGCAT
1 GTCATAAATGCAT
261359 GTCATA
1 GTCATA
261365 GATTTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (13 bp):
GTCATAAATGCAT
Found at i:263693 original size:2 final size:2
Alignment explanation
Indices: 263686--263949 Score: 112
Period size: 2 Copynumber: 138.0 Consensus size: 2
263676 ATATTAATAA
*
263686 AT AT AT AT A- AT AT A- AT ACT AT AT AA AT AT ACT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT
* * *
263727 -T A- AT ACT AT AT AA AT AT AC A- AT AT -T AT AT AA AT AT AT A-
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
263765 AT AT A- AT AT -T AT AT AT -T AT AT A- AT AT AT ACT AT AT ACT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT
* * *
263805 AT A- AT AT AA AT TT A- AT AT AT A- AT AT AT AT GCT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
* *
263844 AT ACT AA AT ACT AT A- AT TT AT ACT AT AT A- AT AT A- AT A- ACT
1 AT A-T AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT A-T
* * *
263884 AC AT A- AT AT AT ACT AT AT AT A- AG ACC AT AT -T AT AT A- AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
263924 ACT AT AT ACT AT AT A- AT AT AT A- AT AT
1 A-T AT AT A-T AT AT AT AT AT AT AT AT AT
263950 GACAACAATA
Statistics
Matches: 201, Mismatches: 21, Indels: 80
0.67 0.07 0.26
Matches are distributed among these distances:
1 26 0.13
2 150 0.75
3 25 0.12
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (2 bp):
AT
Found at i:263713 original size:29 final size:28
Alignment explanation
Indices: 263670--263853 Score: 113
Period size: 29 Copynumber: 6.6 Consensus size: 28
263660 AAAACCAAAA
*
263670 ATAATA-ATATTAATAAATATATATAAT
1 ATAATATATATAAATAAATATATATAAT
263697 ATAATACTATATAAAT--ATACTATATAAT
1 ATAATA-TATATAAATAAATA-TATATAAT
* * *
263725 ATTAATACTATATAAATATACA-ATATTAT
1 A-TAATA-TATATAAATAAATATATATAAT
*
263754 ATAA-ATATATAATATAATATTATATATTAT
1 ATAATATATATAA-ATAA-A-TATATATAAT
263784 ATAATATATACT--AT--ATACTATATAAT
1 ATAATATATA-TAAATAAATA-TATATAAT
**
263810 ATAA-AT-T-TAATATATAATATATATGCT
1 ATAATATATATAA-ATA-AATATATATAAT
263837 ATAATATATACTAAATA
1 ATAATATATA-TAAATA
263854 CTATAATTTA
Statistics
Matches: 126, Mismatches: 8, Indels: 43
0.71 0.05 0.24
Matches are distributed among these distances:
22 1 0.01
24 1 0.01
25 6 0.05
26 19 0.15
27 23 0.18
28 18 0.14
29 33 0.26
30 14 0.11
31 10 0.08
32 1 0.01
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (28 bp):
ATAATATATATAAATAAATATATATAAT
Found at i:263767 original size:7 final size:7
Alignment explanation
Indices: 263669--263968 Score: 173
Period size: 7 Copynumber: 43.1 Consensus size: 7
263659 TAAAACCAAA
263669 AATA-AT
1 AATATAT
263675 AATAT-T
1 AATATAT
*
263681 AATAAAT
1 AATATAT
263688 -ATATAT
1 AATATAT
263694 AATATAAT
1 AATAT-AT
*
263702 ACTATAT
1 AATATAT
263709 AA-ATAT
1 AATATAT
*
263715 ACTATAT
1 AATATAT
263722 AATAT-T
1 AATATAT
263728 AATACTAT
1 AATA-TAT
*
263736 ATAAATAT
1 A-ATATAT
263744 ACA-ATAT
1 A-ATATAT
*
263751 TATATA-
1 AATATAT
263757 AATATAT
1 AATATAT
263764 AATATAAT
1 AATAT-AT
*
263772 ATTATAT
1 AATATAT
*
263779 ATTATAT
1 AATATAT
263786 AATATAT
1 AATATAT
*
263793 ACTATAT
1 AATATAT
*
263800 ACTATAT
1 AATATAT
263807 AATATA-
1 AATATAT
263813 AAT-T-T
1 AATATAT
263818 AATATAT
1 AATATAT
263825 AATATAT
1 AATATAT
*
263832 -ATGCTAT
1 AAT-ATAT
263839 AATATAT
1 AATATAT
*
263846 -A-CTA-
1 AATATAT
263850 AATACTAT
1 AATA-TAT
*
263858 AATTTAT
1 AATATAT
*
263865 ACTATAT
1 AATATAT
263872 AATATAAT
1 AATAT-AT
*
263880 AACTACAT
1 AA-TATAT
263888 AATATAT
1 AATATAT
263895 ACTATATAT
1 A--ATATAT
* *
263904 AAGACCAT
1 AATA-TAT
*
263912 ATTATAT
1 AATATAT
263919 -A-ATAT
1 AATATAT
*
263924 ACTATAT
1 AATATAT
*
263931 ACTATAT
1 AATATAT
263938 AATATAT
1 AATATAT
*
263945 AATATGAC
1 AATAT-AT
*
263953 AACAATAT
1 AA-TATAT
263961 AATATAT
1 AATATAT
263968 A
1 A
263969 CACTATAATA
Statistics
Matches: 229, Mismatches: 36, Indels: 57
0.71 0.11 0.18
Matches are distributed among these distances:
5 11 0.05
6 37 0.16
7 126 0.55
8 42 0.18
9 13 0.06
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.40
Consensus pattern (7 bp):
AATATAT
Found at i:263949 original size:5 final size:5
Alignment explanation
Indices: 263673--263880 Score: 86
Period size: 5 Copynumber: 41.2 Consensus size: 5
263663 ACCAAAAATA
263673 ATAAT ATTAAT A-AAT AT-AT ATAAT ATAAT ACT-AT ATAAAT ATACTAT
1 ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT A-TAAT AT-AAT ATA--AT
* *
263720 ATAAT ATTAAT ACT-AT ATAA- AT-AT ACAAT ATTAT ATAA- AT-AT ATAAT
1 ATAAT A-TAAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
263767 ATAAT ATTATAT ATTAT ATAAT AT-AT ACT-AT ATACTAT ATAAT ATAAAT
1 ATAAT A-TA-AT ATAAT ATAAT ATAAT A-TAAT ATA--AT ATAAT AT-AAT
* ** *
263816 TTAAT AT-AT AATATAT ATGCT ATAAT AT-AT ACTAA- ATACT ATAAT
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT ATAAT A-TAAT ATAAT ATAAT
*
263861 -TTAT ACT-AT ATAAT ATAAT A
1 ATAAT A-TAAT ATAAT ATAAT A
263881 ACTACATAAT
Statistics
Matches: 157, Mismatches: 16, Indels: 60
0.67 0.07 0.26
Matches are distributed among these distances:
3 2 0.01
4 32 0.20
5 81 0.52
6 27 0.17
7 15 0.10
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:264032 original size:18 final size:19
Alignment explanation
Indices: 263884--264035 Score: 61
Period size: 19 Copynumber: 8.1 Consensus size: 19
263874 TATAATAACT
*
263884 ACATAATATATACTATATA
1 ACATACTATATACTATATA
* *
263903 TA-AGACCATAT--TATATA
1 -ACATACTATATACTATATA
*
263920 ATATACTATATACTATATA
1 ACATACTATATACTATATA
* *
263939 ATATA-TAATATGAC-A-ACA
1 ACATACT-ATAT-ACTATATA
* *
263957 ATATAATATATAC-ACTATAA
1 ACATACTATATACTA-TAT-A
* * *
263977 TACATACTGTGTAATATAATA
1 -ACATACTATATACTAT-ATA
263998 TA-ATACTATATACTATATA
1 -ACATACTATATACTATATA
*
264017 ACATAC-ATATATTATATA
1 ACATACTATATACTATATA
264035 A
1 A
264036 ATAATAAACA
Statistics
Matches: 103, Mismatches: 16, Indels: 28
0.70 0.11 0.19
Matches are distributed among these distances:
16 1 0.01
17 16 0.16
18 25 0.24
19 31 0.30
20 15 0.15
21 12 0.12
22 3 0.03
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (19 bp):
ACATACTATATACTATATA
Found at i:272393 original size:30 final size:30
Alignment explanation
Indices: 272352--272409 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
272342 AACCCCACAT
272352 CACCCTCACTTTCTTCC-CATCTCTTTTAAC
1 CACCCTCACTTTCTTCCTC-TCTCTTTTAAC
*
272382 CACCTTCACTTTCTTCCTCTCTCTTTTA
1 CACCCTCACTTTCTTCCTCTCTCTTTTA
272410 TTTTTCTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.14, C:0.41, G:0.00, T:0.45
Consensus pattern (30 bp):
CACCCTCACTTTCTTCCTCTCTCTTTTAAC
Found at i:272415 original size:21 final size:23
Alignment explanation
Indices: 272391--272437 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
272381 CCACCTTCAC
272391 TTTCTTCCTCTCTCTT-TT-ATT
1 TTTCTTCCTCTCTCTTCTTCATT
*
272412 TTTCTTTCTCTCTCTTCTTCATT
1 TTTCTTCCTCTCTCTTCTTCATT
272435 TTT
1 TTT
272438 TTTATTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 15 0.65
22 2 0.09
23 6 0.26
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTCTTCCTCTCTCTTCTTCATT
Found at i:284063 original size:14 final size:16
Alignment explanation
Indices: 284034--284065 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
284024 TATGTAATAG
284034 TAATTTAGGACTATTT
1 TAATTTAGGACTATTT
284050 TAATTT-GG-CTATTT
1 TAATTTAGGACTATTT
284064 TA
1 TA
284066 GTTATAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (16 bp):
TAATTTAGGACTATTT
Found at i:288101 original size:18 final size:18
Alignment explanation
Indices: 288075--288111 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
288065 AGATACACCA
288075 GTCAATTGTTTAAAATGG
1 GTCAATTGTTTAAAATGG
*
288093 GTCACTTGTTTAAAATGG
1 GTCAATTGTTTAAAATGG
288111 G
1 G
288112 ACATGGTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (18 bp):
GTCAATTGTTTAAAATGG
Found at i:293246 original size:13 final size:13
Alignment explanation
Indices: 293228--293252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
293218 ACAGACATGT
293228 ATATGAAGACTGC
1 ATATGAAGACTGC
293241 ATATGAAGACTG
1 ATATGAAGACTG
293253 TTCAACTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (13 bp):
ATATGAAGACTGC
Found at i:301084 original size:45 final size:45
Alignment explanation
Indices: 300773--301082 Score: 471
Period size: 45 Copynumber: 6.9 Consensus size: 45
300763 ACCACTATAC
* * * *
300773 ACTTTTCTGTTGATAATGCATCTATATGCATTTCAACTATAGTAT
1 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTAT
300818 ACCTTTT-TGTTGATAATGTACCCATATACATTTCAACTATAGTAT
1 A-CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTAT
*
300863 ACTTTTCTGTTGATAATGTATCCATATACATTTCAACTATAGTAT
1 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTAT
* * * *
300908 ACTTATCTGTTGATAATGCACCCATATGCATTTCAACTATAGCAT
1 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTAT
*
300953 ACTTTTCTGTTGATAAT-TCACCCATATGCATTTCAACTATAGTAT
1 ACTTTTCTGTTGATAATGT-ACCCATATACATTTCAACTATAGTAT
* * *
300998 ACTTTTCTGTTGATAATATACCCATATACATTTTAACTATGGTAT
1 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTAT
301043 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTAT
1 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTAT
301083 GGCATCCTTT
Statistics
Matches: 243, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
44 5 0.02
45 232 0.95
46 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.42
Consensus pattern (45 bp):
ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTAT
Found at i:301138 original size:135 final size:135
Alignment explanation
Indices: 300773--301120 Score: 446
Period size: 135 Copynumber: 2.6 Consensus size: 135
300763 ACCACTATAC
* * * * * * *** *
300773 ACTTTTCTGTTGATAATGCATCTATATGCATTTCAACTATAGTATACCTTTTTGTTGATAATGTA
1 ACTTATCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACCTTTCTGCCAATAATGCA
* * *
300838 CCCATATACATTTCAACTATAGTATACTTTTCTGTTGATAATGTATCCATATACATTTCAACTAT
66 CCCATATGCATTTCAACTATAGTATACTTTTCTGTTGATAATATACCCATATACATTTCAACTAT
300903 AGTAT
131 AGTAT
* * *** *
300908 ACTTATCTGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTGTTGATAATTCA
1 ACTTATCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACCTTTCTGCCAATAATGCA
*
300973 CCCATATGCATTTCAACTATAGTATACTTTTCTGTTGATAATATACCCATATACATTTTAACTAT
66 CCCATATGCATTTCAACTATAGTATACTTTTCTGTTGATAATATACCCATATACATTTCAACTAT
*
301038 GGTAT
131 AGTAT
* * *
301043 ACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATGGCAT-CCTTTCAATGCCAATAATG
1 ACTTATCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACCTTTC--TGCCAATAATG
*
301107 CTCCCATATGCATT
64 CACCCATATGCATT
301121 ATTATTTTCA
Statistics
Matches: 188, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
134 5 0.03
135 163 0.87
136 20 0.11
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (135 bp):
ACTTATCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACCTTTCTGCCAATAATGCA
CCCATATGCATTTCAACTATAGTATACTTTTCTGTTGATAATATACCCATATACATTTCAACTAT
AGTAT
Found at i:301558 original size:20 final size:20
Alignment explanation
Indices: 301530--301584 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
301520 TGGCCCTTCA
301530 GTATCGATACCCCTACCA-TG
1 GTATCGATACCCCTA-CATTG
*
301550 GTATTGATACTACCCTACATTG
1 GTATCGATAC--CCCTACATTG
301572 GTATCGATACCCC
1 GTATCGATACCCC
301585 CTTCCAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 12 0.40
21 2 0.07
22 16 0.53
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (20 bp):
GTATCGATACCCCTACATTG
Found at i:301676 original size:95 final size:95
Alignment explanation
Indices: 301530--301770 Score: 274
Period size: 95 Copynumber: 2.5 Consensus size: 95
301520 TGGCCCTTCA
* * * * *
301530 GTATCGATACCCCTACCATGGTATTGATACTACCCTAC-ATTGGTATCGATACCCCCT-TCCAGT
1 GTATCGATACCCATACCATGGTATCGATACTA-CTTACTA-TGGTACCGATACCCCCTATACAGT
*
301593 ATCAATACCAAAATTAAATTCGATGTGGCCCG
64 ATCAATACCAAAATTAAATTCGATGTGACCCG
* **
301625 GTATCGATACCCTTACCATGGTATCGATACTACTATACTATGGTACCGATA-CCCCTATATGGTA
1 GTATCGATACCCATACCATGGTATCGATACTACT-TACTATGGTACCGATACCCCCTATACAGTA
* ** * *
301689 TCGATACCAAAATTAGGTTTGATGTTACCCG
65 TCAATACCAAAATTAAATTCGATGTGACCCG
* *
301720 GTATCGATACCCATACCATGGTATCGATACAACTT-CGTTTGGTACCGATAC
1 GTATCGATACCCATACCATGGTATCGATACTACTTAC-TATGGTACCGATAC
301771 TAATTGAATC
Statistics
Matches: 125, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
93 1 0.01
94 19 0.15
95 104 0.83
96 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (95 bp):
GTATCGATACCCATACCATGGTATCGATACTACTTACTATGGTACCGATACCCCCTATACAGTAT
CAATACCAAAATTAAATTCGATGTGACCCG
Found at i:301682 original size:22 final size:22
Alignment explanation
Indices: 301624--301696 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
301614 GATGTGGCCC
301624 GGTATCGATA-CCCT-TACCAT
1 GGTATCGATACCCCTATACCAT
** *
301644 GGTATCGATACTACTATACTAT
1 GGTATCGATACCCCTATACCAT
*
301666 GGTACCGATACCCCTAT---AT
1 GGTATCGATACCCCTATACCAT
301685 GGTATCGATACC
1 GGTATCGATACC
301697 AAAATTAGGT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 13 0.30
20 10 0.23
21 2 0.05
22 19 0.43
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (22 bp):
GGTATCGATACCCCTATACCAT
Found at i:311766 original size:102 final size:102
Alignment explanation
Indices: 311582--311792 Score: 350
Period size: 102 Copynumber: 2.1 Consensus size: 102
311572 CCTCAGACTC
* * *
311582 AGAAAGACCAACCTAAAGGACTCAAAAGCGATAAACTGAAGGAATTTGCCATAGATCCTCCTTTT
1 AGAAAGACCAACCTAAAGGACTCAAAAGCGAAAAACCGAAAGAATTTGCCATAGATCCTCCTTTT
* *
311647 CCCTCTAGATTCGCTAAGTCCAAGAAAGAAGCAGAAG
66 CCCTCTAGATTCACTAAGTCCAAGAAAGAAACAGAAG
* *
311684 AGAAGGACCAACCTAAAGGACTCAAAAGTGAAAAACCGAAAGAATTTGCCATAGATCCTCCTTTT
1 AGAAAGACCAACCTAAAGGACTCAAAAGCGAAAAACCGAAAGAATTTGCCATAGATCCTCCTTTT
*
311749 CCCTCTAGATTCACTAAGTCCAAGAAAGAAACATAAG
66 CCCTCTAGATTCACTAAGTCCAAGAAAGAAACAGAAG
311786 AGAAAGA
1 AGAAAGA
311793 AATTCTTGAG
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.19
Consensus pattern (102 bp):
AGAAAGACCAACCTAAAGGACTCAAAAGCGAAAAACCGAAAGAATTTGCCATAGATCCTCCTTTT
CCCTCTAGATTCACTAAGTCCAAGAAAGAAACAGAAG
Found at i:320367 original size:18 final size:18
Alignment explanation
Indices: 320341--320376 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
320331 GATGGGCTAT
320341 ACAAGTGTGACTATTCTA
1 ACAAGTGTGACTATTCTA
* *
320359 ACAATTGTGCCTATTCTA
1 ACAAGTGTGACTATTCTA
320377 GATATAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
ACAAGTGTGACTATTCTA
Found at i:331430 original size:3 final size:3
Alignment explanation
Indices: 331416--331454 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
331406 TTGTCCGGGA
*
331416 TAT TAT TTT TAT TAT TAT TAT TA- TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
331455 ATAATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:331430 original size:9 final size:9
Alignment explanation
Indices: 331416--331454 Score: 55
Period size: 8 Copynumber: 4.6 Consensus size: 9
331406 TTGTCCGGGA
*
331416 TATTATTTT
1 TATTATTAT
331425 TATTATTAT
1 TATTATTAT
331434 TATTA-TAT
1 TATTATTAT
331442 TATT-TTAT
1 TATTATTAT
331450 TATTA
1 TATTA
331455 ATAATAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
8 14 0.52
9 13 0.48
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TATTATTAT
Found at i:332077 original size:12 final size:12
Alignment explanation
Indices: 332062--332093 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
332052 TTGTGTAAGT
332062 CTTTGCATTCAA
1 CTTTGCATTCAA
332074 CTTTGCATTCAA
1 CTTTGCATTCAA
332086 CTTTGCAT
1 CTTTGCAT
332094 CCAGCACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (12 bp):
CTTTGCATTCAA
Found at i:340809 original size:24 final size:24
Alignment explanation
Indices: 340764--340809 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
340754 GTTACAAAAG
* *
340764 CTTGTGCTTTTATAGCCGATGAAT
1 CTTGTGCTTTTACAGCAGATGAAT
* *
340788 CTTGTGCTTTTGCAGCATATGA
1 CTTGTGCTTTTACAGCAGATGA
340810 GTCTCCTTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (24 bp):
CTTGTGCTTTTACAGCAGATGAAT
Found at i:342938 original size:18 final size:18
Alignment explanation
Indices: 342915--342954 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
342905 CTTTTCATCT
* *
342915 ACCCTACAACTTTTACTA
1 ACCCTACAACCTTTACCA
342933 ACCCTACAACCTTTACCA
1 ACCCTACAACCTTTACCA
342951 ACCC
1 ACCC
342955 ATTCTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.25
Consensus pattern (18 bp):
ACCCTACAACCTTTACCA
Found at i:344527 original size:3 final size:3
Alignment explanation
Indices: 344519--344564 Score: 76
Period size: 3 Copynumber: 15.3 Consensus size: 3
344509 AAAAAGATAT
344519 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TGAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
344564 T
1 T
344565 TAAAAAGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:344574 original size:13 final size:12
Alignment explanation
Indices: 344523--344580 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
344513 AGATATTAAT
* *
344523 AATAATAATAAT
1 AATAATAAAAAG
* *
344535 AATAATAATAAT
1 AATAATAAAAAG
*
344547 AATAATAAAATG
1 AATAATAAAAAG
344559 AATAATTAAAAAG
1 AATAA-TAAAAAG
344572 AAT-ATAAAA
1 AATAATAAAA
344581 TACTGCGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
11 5 0.12
12 27 0.66
13 9 0.22
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (12 bp):
AATAATAAAAAG
Found at i:347713 original size:5 final size:5
Alignment explanation
Indices: 345805--347693 Score: 3551
Period size: 5 Copynumber: 379.4 Consensus size: 5
345795 AAAATATACT
* * * * * *
345805 ATAAC ATAAC ATAAC ATAAC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
* * * * * * * *
345855 ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAAC ATAGC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
* * * *
345905 ATAGC ATAAC ATAGC ATAAC ATAGC ATAAC ATAGC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
345955 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346005 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346055 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346105 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346155 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346205 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346255 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC -TAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346304 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346354 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346404 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346454 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346504 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346554 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346604 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346654 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346704 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346754 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346804 ATAAC ATAAC ATAAC ATAAC --AAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346852 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346902 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
346952 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC AT-A- ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347000 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC AT-AC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347049 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347099 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347149 ATAAC ATAAC ATAAC ATAAC ATAAC AT-AC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347198 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347248 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347298 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347348 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC A-AAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347397 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347447 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347497 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347547 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
347597 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC
*
347647 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATCAC AT
1 ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC ATAAC AT
347694 CATATAATAT
Statistics
Matches: 1863, Mismatches: 13, Indels: 16
0.98 0.01 0.01
Matches are distributed among these distances:
3 5 0.00
4 18 0.01
5 1840 0.99
ACGTcount: A:0.59, C:0.20, G:0.01, T:0.20
Consensus pattern (5 bp):
ATAAC
Found at i:347765 original size:26 final size:27
Alignment explanation
Indices: 347736--347810 Score: 89
Period size: 26 Copynumber: 2.7 Consensus size: 27
347726 ACTATTTAAC
347736 ATATAATATATTTTCAAAAATT-ATAT
1 ATATAATATATTTTCAAAAATTAATAT
* * *
347762 ATATTATATGTTTTCAAAATTTAATAT
1 ATATAATATATTTTCAAAAATTAATAT
347789 ATATATATATATATATTCAAAA
1 ATATA-ATATAT-T-TTCAAAA
347811 TATGTTTTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 19 0.47
27 8 0.20
28 5 0.12
29 1 0.03
30 7 0.17
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (27 bp):
ATATAATATATTTTCAAAAATTAATAT
Found at i:347881 original size:38 final size:37
Alignment explanation
Indices: 347846--348087 Score: 285
Period size: 38 Copynumber: 6.5 Consensus size: 37
347836 ATTTTTTTAA
* * *
347846 AAAAACAATATATTATATGTTTGCATAAACCTTTTTTT
1 AAAAACTATATATTATATGTTTTCA-AAACCATTTTTT
* *
347884 TAAAACTATATATTATATGTTTACAAAACCATTTTTT
1 AAAAACTATATATTATATGTTTTCAAAACCATTTTTT
***
347921 AAAAACTATATATTATATGTTTTCAAACATTGTTTTTT
1 AAAAACTATATATTATATGTTTTCAAA-ACCATTTTTT
* *
347959 AAAAATTATATATTATATATTTTCAAAACCATTTTTT
1 AAAAACTATATATTATATGTTTTCAAAACCATTTTTT
*
347996 --AAACTATATATTATATGTTTTCAAAAACCGTTTTTT
1 AAAAACTATATATTATATGTTTTC-AAAACCATTTTTT
* *
348032 AAAAAAACTATATATTATATATTTTCAAAACCGTTTTTT
1 --AAAAACTATATATTATATGTTTTCAAAACCATTTTTT
348071 --AAACTATACTATTATAT
1 AAAAACTATA-TATTATAT
348088 ATTATCATAT
Statistics
Matches: 179, Mismatches: 18, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
35 28 0.16
36 20 0.11
37 43 0.24
38 54 0.30
39 13 0.07
40 21 0.12
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.46
Consensus pattern (37 bp):
AAAAACTATATATTATATGTTTTCAAAACCATTTTTT
Found at i:348010 original size:73 final size:73
Alignment explanation
Indices: 347848--348087 Score: 313
Period size: 75 Copynumber: 3.2 Consensus size: 73
347838 TTTTTTAAAA
* * * * *
347848 AAACAATATATTATATGTTTGCATAAACCTT-TTTTTT-AAAACTATATATTATATGTTTACAAA
1 AAACTATATATTATATGTTTTC--AAACATTGTTTTTTAAAAACTATATATTATATATTTTCAAA
347911 ACCATTTTTT
64 ACCATTTTTT
*
347921 AAAAACTATATATTATATGTTTTCAAACATTGTTTTTTAAAAATTATATATTATATATTTTCAAA
1 --AAACTATATATTATATGTTTTCAAACATTGTTTTTTAAAAACTATATATTATATATTTTCAAA
347986 ACCATTTTTT
64 ACCATTTTTT
* **
347996 AAACTATATATTATATGTTTTCAAAAACCGTTTTTTAAAAAAACTATATATTATATATTTTCAAA
1 AAACTATATATTATATGTTTTCAAACATTGTTTTTT--AAAAACTATATATTATATATTTTCAAA
*
348061 ACCGTTTTTT
64 ACCATTTTTT
348071 AAACTATACTATTATAT
1 AAACTATA-TATTATAT
348088 ATTATCATAT
Statistics
Matches: 149, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
73 39 0.26
74 6 0.04
75 96 0.64
76 8 0.05
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (73 bp):
AAACTATATATTATATGTTTTCAAACATTGTTTTTTAAAAACTATATATTATATATTTTCAAAAC
CATTTTTT
Found at i:348752 original size:42 final size:42
Alignment explanation
Indices: 348693--348775 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
348683 GCCATATGAC
* * *
348693 ACCGGGGTGTTTCCATGCAAAATGCATTAAACACCATGCGTG
1 ACCGGGGTATTGCCATGCAAAATGCATGAAACACCATGCGTG
*
348735 ACCGGGGTATTGCCATGCAAAATGCATGGAACACCATGCGT
1 ACCGGGGTATTGCCATGCAAAATGCATGAAACACCATGCGT
348776 CACCCCTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (42 bp):
ACCGGGGTATTGCCATGCAAAATGCATGAAACACCATGCGTG
Found at i:348793 original size:42 final size:42
Alignment explanation
Indices: 348702--348794 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
348692 CACCGGGGTG
* * **
348702 TTTCCATGCAAAATGCATTAAACACCATGCGTGACCGGGGTA
1 TTTCCATGCAAAATGCATGAAACACCATGCGTCACCGCCGTA
* * *
348744 TTGCCATGCAAAATGCATGGAACACCATGCGTCACC-CCTTAA
1 TTTCCATGCAAAATGCATGAAACACCATGCGTCACCGCCGT-A
348786 TTTCCATGC
1 TTTCCATGC
348795 TTTCCATCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (42 bp):
TTTCCATGCAAAATGCATGAAACACCATGCGTCACCGCCGTA
Found at i:362836 original size:49 final size:49
Alignment explanation
Indices: 362772--362870 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
362762 GTGTCAATTG
362772 AAGACGATGATAATGTAAAAGTGGTGAAATGTTCAAATTTAACATATTT
1 AAGACGATGATAATGTAAAAGTGGTGAAATGTTCAAATTTAACATATTT
*
362821 AAGATGATGATAATGTAAAAGTGGTGAAATGTTCAAATTTAACATATTT
1 AAGACGATGATAATGTAAAAGTGGTGAAATGTTCAAATTTAACATATTT
362870 A
1 A
362871 GCAGAAAAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.33
Consensus pattern (49 bp):
AAGACGATGATAATGTAAAAGTGGTGAAATGTTCAAATTTAACATATTT
Found at i:363533 original size:30 final size:30
Alignment explanation
Indices: 363499--363601 Score: 121
Period size: 30 Copynumber: 3.6 Consensus size: 30
363489 GGTTTTTTGA
*
363499 GTTAAAGTGGTTTAGGGTTATGGTTTTTAT
1 GTTAAAATGGTTTAGGGTTATGGTTTTTAT
*
363529 GTTAAAATGGTTTA--G----GGTTTTTAG
1 GTTAAAATGGTTTAGGGTTATGGTTTTTAT
*
363553 GTT-AAAGGGATTTAGGGTTATGGTTTTTAT
1 GTTAAAATGG-TTTAGGGTTATGGTTTTTAT
363583 GTTAAAATGGTTTAGGGTT
1 GTTAAAATGGTTTAGGGTT
363602 TTTAGAGTAA
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
23 5 0.08
24 15 0.25
26 1 0.02
28 1 0.02
30 33 0.55
31 5 0.08
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (30 bp):
GTTAAAATGGTTTAGGGTTATGGTTTTTAT
Found at i:363547 original size:24 final size:24
Alignment explanation
Indices: 363520--363648 Score: 127
Period size: 24 Copynumber: 5.2 Consensus size: 24
363510 TTAGGGTTAT
363520 GGTTTTTATGTTAAAATGGTTTAG
1 GGTTTTTATGTTAAAATGGTTTAG
* * *
363544 GGTTTTTAGGTTAAAGGGATTTAGGGTTAT
1 GGTTTTTATGTTAAA---A--T-GGTTTAG
363574 GGTTTTTATGTTAAAATGGTTTAG
1 GGTTTTTATGTTAAAATGGTTTAG
*
363598 GGTTTTTA-GAGTAAAATGGTTTA-
1 GGTTTTTATG-TTAAAATGGTTTAG
* *
363621 GGTTTTTTTGTTTAAATGGTTTAG
1 GGTTTTTATGTTAAAATGGTTTAG
363645 GGTT
1 GGTT
363649 AGATTAAAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
23 19 0.22
24 44 0.51
25 1 0.01
27 2 0.02
29 1 0.01
30 19 0.22
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (24 bp):
GGTTTTTATGTTAAAATGGTTTAG
Found at i:363567 original size:54 final size:55
Alignment explanation
Indices: 363479--363622 Score: 240
Period size: 54 Copynumber: 2.7 Consensus size: 55
363469 GTCAGATTTT
*
363479 AATGGTTTAGGGTTTTTTGAGTTAAAGTGGTTTAGGGTTATGGTTTTTATGTTAA
1 AATGGTTTAGGGTTTTTAGAGTTAAAGTGGTTTAGGGTTATGGTTTTTATGTTAA
363534 AATGGTTTAGGGTTTTTAG-GTTAAAG-GGATTTAGGGTTATGGTTTTTATGTTAA
1 AATGGTTTAGGGTTTTTAGAGTTAAAGTGG-TTTAGGGTTATGGTTTTTATGTTAA
*
363588 AATGGTTTAGGGTTTTTAGAG-TAAAATGGTTTAGG
1 AATGGTTTAGGGTTTTTAGAGTTAAAGTGGTTTAGG
363623 TTTTTTTGTT
Statistics
Matches: 84, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
53 2 0.02
54 61 0.73
55 21 0.25
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (55 bp):
AATGGTTTAGGGTTTTTAGAGTTAAAGTGGTTTAGGGTTATGGTTTTTATGTTAA
Found at i:364316 original size:36 final size:36
Alignment explanation
Indices: 364269--364371 Score: 145
Period size: 36 Copynumber: 2.9 Consensus size: 36
364259 TAATGGTATG
* *
364269 TTTATGTCCTTAACGTAATGTGTTA-GGTTTTTTATT
1 TTTATGTCCTTAATGTAATGT-TTATGGTTTATTATT
* *
364305 TTTATGTCCTTAATGTAATGTTTATGGTTCATTGTT
1 TTTATGTCCTTAATGTAATGTTTATGGTTTATTATT
*
364341 TTTATGTCTTTAATGTAATGTTTATGGTTTA
1 TTTATGTCCTTAATGTAATGTTTATGGTTTA
364372 GGATTTAATG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
35 3 0.05
36 57 0.95
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.56
Consensus pattern (36 bp):
TTTATGTCCTTAATGTAATGTTTATGGTTTATTATT
Found at i:364330 original size:20 final size:19
Alignment explanation
Indices: 364305--364366 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
364295 GTTTTTTATT
364305 TTTATGTCCTTAATGTAATG
1 TTTATGT-CTTAATGTAATG
* *
364325 TTTATGGT-TCATTGT--T-
1 TTTAT-GTCTTAATGTAATG
364341 TTTATGTCTTTAATGTAATG
1 TTTATGTC-TTAATGTAATG
364361 TTTATG
1 TTTATG
364367 GTTTAGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
15 2 0.06
16 5 0.16
17 6 0.19
19 6 0.19
20 11 0.34
21 2 0.06
ACGTcount: A:0.21, C:0.06, G:0.16, T:0.56
Consensus pattern (19 bp):
TTTATGTCTTAATGTAATG
Found at i:364691 original size:21 final size:21
Alignment explanation
Indices: 364665--364713 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
364655 TATCCTTATT
364665 GCAATCACCCTTTTATGTGAA
1 GCAATCACCCTTTTATGTGAA
364686 GCAATCACCCTTTTATGTGAA
1 GCAATCACCCTTTTATGTGAA
364707 GCAATCA
1 GCAATCA
364714 TATACCTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (21 bp):
GCAATCACCCTTTTATGTGAA
Found at i:382702 original size:7 final size:7
Alignment explanation
Indices: 382690--382720 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
382680 ACCTTATATA
382690 TTTAGGG
1 TTTAGGG
382697 TTTAGGG
1 TTTAGGG
382704 TTTAGGG
1 TTTAGGG
*
382711 TTTATGG
1 TTTAGGG
382718 TTT
1 TTT
382721 TTTTCAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.35, T:0.52
Consensus pattern (7 bp):
TTTAGGG
Found at i:391305 original size:182 final size:179
Alignment explanation
Indices: 390948--391310 Score: 590
Period size: 182 Copynumber: 2.0 Consensus size: 179
390938 GACCCAGTGG
*
390948 ATTTATAGCTATCATGTCACCATCAATAGGTTCTAACGAATTAGTTCTTTTATCTAATATCTTTT
1 ATTTATAGCTATCATGTCACCATCAATAGGTTCTAACGAATTAGTTCTTTTATCTAATA-CATTT
*
391013 TAAGAGCTAACATAGAATGTAACCCAAATCTATCAAAACAAATGCAGGCTCATCATAAAGATGGA
65 T-AGAGCTAACATAGAATGTAACCCAAATATATCAAAACAAATGCAGGCTCATCATAAAGATGGA
391078 AAGTATCTGTTATAATCTGAGGGTCATCGTGATCTTCTGAGTCTTGATATGT
129 AAGTA-CTGTTATAATCTGAGGGTCATCGTGATCTTCTGAGTCTTGATATGT
391130 ATTTATAGCTATCATGTCACCATCAATAGGTTCTAACGAATTAGTTC-TTTATCTGAATA-ATTT
1 ATTTATAGCTATCATGTCACCATCAATAGGTTCTAACGAATTAGTTCTTTTATCT-AATACATTT
391193 T-GAGCTAACATAGAAATGTAAAGAACCCAAATATATCAAAACAAATGCAGGCTCATCATAAAGA
65 TAGAGCTAACATAG-AATGT----AACCCAAATATATCAAAACAAATGCAGGCTCATCATAAAGA
391257 TGGAAAGTA-TGTTATAATCTGAGGGTCATCGTGATCTTCTGAAGTCTTGATATG
125 TGGAAAGTACTGTTATAATCTGAGGGTCATCGTGATCTTCTG-AGTCTTGATATG
391311 GTAAATTTTT
Statistics
Matches: 172, Mismatches: 2, Indels: 14
0.91 0.01 0.07
Matches are distributed among these distances:
178 12 0.07
179 5 0.03
180 4 0.02
181 39 0.23
182 63 0.37
183 49 0.28
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (179 bp):
ATTTATAGCTATCATGTCACCATCAATAGGTTCTAACGAATTAGTTCTTTTATCTAATACATTTT
AGAGCTAACATAGAATGTAACCCAAATATATCAAAACAAATGCAGGCTCATCATAAAGATGGAAA
GTACTGTTATAATCTGAGGGTCATCGTGATCTTCTGAGTCTTGATATGT
Found at i:399984 original size:22 final size:23
Alignment explanation
Indices: 399933--399985 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
399923 ACAAATGAGT
*
399933 AAAAAAATAGAAGAAAAGTACAA
1 AAAAAAATAGAAGAAAAGCACAA
** *
399956 ATTAAAATA-AAGAAAAGCAAAGA
1 AAAAAAATAGAAGAAAAGCACA-A
399979 AAAAAAA
1 AAAAAAA
399986 GAGGTACATT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.75, C:0.04, G:0.11, T:0.09
Consensus pattern (23 bp):
AAAAAAATAGAAGAAAAGCACAA
Found at i:403051 original size:117 final size:119
Alignment explanation
Indices: 402831--403067 Score: 451
Period size: 117 Copynumber: 2.0 Consensus size: 119
402821 ACGAGGAAGT
*
402831 TTTCTATACCCTGTTCAATTTCTACTTTGCATTCATTGTGTTTATACTCATATCATATATTACAT
1 TTTCTATACCCTGTTCAATTTCTACTTTGCATTCATTGTGTTTATAATCATATCATATATTACAT
402896 ATATTGATATATGGATATATTCATCTATATACATTTTATCTATGGTTATAATAA
66 ATATTGATATATGGATATATTCATCTATATACATTTTATCTATGGTTATAATAA
402950 TTTCTATA-CCTG-TCAATTTCTACTTTGCATTCATTGTGTTTATAATCATATCATATATTACAT
1 TTTCTATACCCTGTTCAATTTCTACTTTGCATTCATTGTGTTTATAATCATATCATATATTACAT
403013 ATATTGATATATGGATATATTCATCTATATACATTTTATCTATGGTTATAATAA
66 ATATTGATATATGGATATATTCATCTATATACATTTTATCTATGGTTATAATAA
403067 T
1 T
403068 AATCTTTAAT
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
117 105 0.90
118 4 0.03
119 8 0.07
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.48
Consensus pattern (119 bp):
TTTCTATACCCTGTTCAATTTCTACTTTGCATTCATTGTGTTTATAATCATATCATATATTACAT
ATATTGATATATGGATATATTCATCTATATACATTTTATCTATGGTTATAATAA
Found at i:403111 original size:117 final size:115
Alignment explanation
Indices: 402845--403095 Score: 317
Period size: 117 Copynumber: 2.2 Consensus size: 115
402835 TATACCCTGT
* * * * * *
402845 TCAATTTCTACTTTGCATTCATTGTGTTTATACTCATATCATATATTACATATATTGATATATGG
1 TCAATTTCTAATATGAATTAATTATGTTTATAATCATATCATATATTACATATATTGATATATGG
* *
402910 ATATATTCATCTATATACATTTTATCTATGGTTATAATAATTTCTATACCTG
66 ATATATTCATCTATATACATTTTATCTATGGTTATAATAATATCTATA-C-A
* * * * *
402962 TCAATTTCTACTTTGCATTCATTGTGTTTATAATCATATCATATATTACATATATTGATATATGG
1 TCAATTTCTAATATGAATTAATTATGTTTATAATCATATCATATATTACATATATTGATATATGG
*
403027 ATATATTCATCTATATACATTTTATCTATGGTTATAATAATAATCTTTA-A
66 ATATATTCATCTATATACATTTTATCTATGGTTATAATAAT-ATCTATACA
*
403077 TCCA-TTCTAAATATGAATT
1 TCAATTTCT-AATATGAATT
403096 TTAATTATTA
Statistics
Matches: 124, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
114 4 0.03
115 10 0.08
117 105 0.85
118 5 0.04
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (115 bp):
TCAATTTCTAATATGAATTAATTATGTTTATAATCATATCATATATTACATATATTGATATATGG
ATATATTCATCTATATACATTTTATCTATGGTTATAATAATATCTATACA
Found at i:404164 original size:61 final size:61
Alignment explanation
Indices: 404069--404190 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
404059 CTTCCTATAT
404069 CTCTTTGTAATTTAAGCATCTTTTGAGCGAATGGACTTCACCAATGCACACCTCTCTTCAA
1 CTCTTTGTAATTTAAGCATCTTTTGAGCGAATGGACTTCACCAATGCACACCTCTCTTCAA
404130 CTCTTTGTAATTTAAGCATCTTTTGAGCGAATGGACTTCACCAATGCACACCTCTCTTCAA
1 CTCTTTGTAATTTAAGCATCTTTTGAGCGAATGGACTTCACCAATGCACACCTCTCTTCAA
404191 TGAAATCCTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (61 bp):
CTCTTTGTAATTTAAGCATCTTTTGAGCGAATGGACTTCACCAATGCACACCTCTCTTCAA
Found at i:409659 original size:14 final size:14
Alignment explanation
Indices: 409640--409668 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
409630 AATAGTTTTG
409640 GCAACTAAAAATAT
1 GCAACTAAAAATAT
409654 GCAACTAAAAATAT
1 GCAACTAAAAATAT
409668 G
1 G
409669 TTCCACTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (14 bp):
GCAACTAAAAATAT
Found at i:417805 original size:2 final size:2
Alignment explanation
Indices: 417798--417827 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
417788 AAAAATGTAA
417798 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
417828 TTCTACTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:420894 original size:4 final size:4
Alignment explanation
Indices: 420870--420945 Score: 55
Period size: 4 Copynumber: 17.8 Consensus size: 4
420860 TAAATAGGGG
* * *
420870 TAAA TAAA CAAAA TAAC TAAA TAAA GGTACA TAAA TAAA -ACACA TGAAA
1 TAAA TAAA -TAAA TAAA TAAA TAAA --TAAA TAAA TAAA TA-A-A T-AAA
*
420919 CAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
420946 TGAATATTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
3 1 0.02
4 46 0.81
5 5 0.09
6 4 0.07
7 1 0.02
ACGTcount: A:0.68, C:0.08, G:0.04, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:421029 original size:27 final size:27
Alignment explanation
Indices: 420963--421031 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 27
420953 TTATATTTGT
* ** *
420963 TAAATAATTATATAAAACGTAATATGTA
1 TAAA-AATTATTTAAAAAATAATATATA
*
420991 -AAAAAATA-TTAAAAAATAATATATA
1 TAAAAATTATTTAAAAAATAATATATA
421016 TAAAAATTATTTAAAA
1 TAAAAATTATTTAAAA
421032 TGAAAAAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
25 13 0.39
26 11 0.33
27 9 0.27
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (27 bp):
TAAAAATTATTTAAAAAATAATATATA
Found at i:421032 original size:25 final size:25
Alignment explanation
Indices: 420963--421032 Score: 61
Period size: 26 Copynumber: 2.7 Consensus size: 25
420953 TTATATTTGT
* *
420963 TAAATAATTATATAAAACGTAATATGTA
1 TAAA-AATTATTTAAAA--TAATATATA
* *
420991 -AAAAAATATTAAAAAATAATATATA
1 TAAAAATTATT-TAAAATAATATATA
421016 TAAAAATTATTTAAAAT
1 TAAAAATTATTTAAAAT
421033 GAAAAAAACA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
25 13 0.38
26 14 0.41
27 7 0.21
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (25 bp):
TAAAAATTATTTAAAATAATATATA
Found at i:421324 original size:14 final size:14
Alignment explanation
Indices: 421293--421335 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
421283 ATAATATATT
*
421293 AAAAAACTTAAA-A
1 AAAAAACATAAATA
*
421306 CAAAAACATAAATA
1 AAAAAACATAAATA
421320 AAAAAACATAAATA
1 AAAAAACATAAATA
421334 AA
1 AA
421336 TTTATTCCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAAACATAAATA
Found at i:422754 original size:56 final size:56
Alignment explanation
Indices: 422627--422945 Score: 534
Period size: 56 Copynumber: 5.7 Consensus size: 56
422617 CCTGCTACCA
* * * * *
422627 ATACGGAAATTTATACACTTAGTATAAATTTCCT-AGTTTTGCACATATAGTG-CC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
422681 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
*
422737 ATATGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
422793 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
* *
422849 ATATGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACGCATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
* *
422905 ATACGAAAATTCATCCACTTAGTATAAATTTCTTAAGTTTT
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTT
422946 TTCACAATTA
Statistics
Matches: 251, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
54 30 0.12
55 17 0.07
56 204 0.81
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (56 bp):
ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCC
Found at i:423127 original size:20 final size:20
Alignment explanation
Indices: 423089--423125 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
423079 ATGTTTTGAA
*
423089 TGGTATCGATACCTTCCCTT
1 TGGTATCGATACCTCCCCTT
423109 TGGTATCGATA-CTCCCC
1 TGGTATCGATACCTCCCC
423126 CTCAGTATCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (20 bp):
TGGTATCGATACCTCCCCTT
Found at i:431835 original size:31 final size:31
Alignment explanation
Indices: 431800--431867 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
431790 ATAATGGTGG
* *
431800 AGTGATCATTTTGTTACAAATCGATAACATT
1 AGTGACCATTTTGTTACAAATCGATAACACT
*
431831 AGTGACCATTTTGTTACAAATCGATAATACT
1 AGTGACCATTTTGTTACAAATCGATAACACT
431862 AGTGAC
1 AGTGAC
431868 TAATCTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (31 bp):
AGTGACCATTTTGTTACAAATCGATAACACT
Found at i:434069 original size:31 final size:31
Alignment explanation
Indices: 434021--434093 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
434011 AGGTATTGTG
* * *
434021 TAGACGCCTATAAGTGTAATAGAGAAAATGT
1 TAGACACCTATAAGTGTAACAGAGAAAACGT
* *
434052 TAGACACCTA-AATGTGTAACGGATAAAACGT
1 TAGACACCTATAA-GTGTAACAGAGAAAACGT
434083 TAGACACCTAT
1 TAGACACCTAT
434094 GTTTAGCGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 33 0.94
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (31 bp):
TAGACACCTATAAGTGTAACAGAGAAAACGT
Found at i:434126 original size:28 final size:29
Alignment explanation
Indices: 434087--434142 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
434077 AAACGTTAGA
*
434087 CACCTATGTTTAGCG-AAAATTCTTTAAC
1 CACCTATGTTTAACGAAAAATTCTTTAAC
* *
434115 CACCTATTTTTAATGAAAAATTCTTTAA
1 CACCTATGTTTAACGAAAAATTCTTTAA
434143 GCGCCTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (29 bp):
CACCTATGTTTAACGAAAAATTCTTTAAC
Found at i:435523 original size:20 final size:19
Alignment explanation
Indices: 435487--435535 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
435477 CTGGGTTGTA
*
435487 GTATCGATGTCAAATGCTCG
1 GTATCGAT-ACAAATGCTCG
*
435507 GTATCGATACAAGATGCTTG
1 GTATCGATACAA-ATGCTCG
*
435527 ATATCGATA
1 GTATCGATA
435536 TCGCGGGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (19 bp):
GTATCGATACAAATGCTCG
Found at i:438102 original size:61 final size:61
Alignment explanation
Indices: 437977--438103 Score: 148
Period size: 61 Copynumber: 2.1 Consensus size: 61
437967 CATCATTCGT
* * * * * * *
437977 GCCTTTGAGGGGTTCTGTCTGAGTTGGGGCCATGTAAGGAAAGGCTCGGATTGTCATCTAC
1 GCCTTTGAGGGGTTCTATCCGAGCTGGGGCCACGTAAGGAAAGGCGCGGATTGGCATCCAC
* * *
438038 GCCTTTGTGGGGTTCTATCCGAGCTGGTGCCACGTAAGGAAAGGCGCGGA-TGGCGATCCGC
1 GCCTTTGAGGGGTTCTATCCGAGCTGGGGCCACGTAAGGAAAGGCGCGGATTGGC-ATCCAC
438099 GCCTT
1 GCCTT
438104 CGCAGGGTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 3 0.05
61 52 0.95
ACGTcount: A:0.17, C:0.22, G:0.35, T:0.26
Consensus pattern (61 bp):
GCCTTTGAGGGGTTCTATCCGAGCTGGGGCCACGTAAGGAAAGGCGCGGATTGGCATCCAC
Found at i:438408 original size:14 final size:13
Alignment explanation
Indices: 438370--438419 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
438360 ATTTTATATT
*
438370 TAATTATTTGTAC
1 TAATTTTTTGTAC
*
438383 AAATTTTATTGTAC
1 TAATTTT-TTGTAC
438397 TAATTATTTTGTA-
1 TAATT-TTTTGTAC
438410 TAATTTTTTG
1 TAATTTTTTG
438420 CTGTTGTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 5 0.16
13 10 0.31
14 15 0.47
15 2 0.06
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (13 bp):
TAATTTTTTGTAC
Found at i:438695 original size:31 final size:31
Alignment explanation
Indices: 438659--438718 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
438649 AACTTAAAAG
* *
438659 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
438690 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
438719 CATACAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:439854 original size:23 final size:23
Alignment explanation
Indices: 439828--439951 Score: 140
Period size: 23 Copynumber: 5.3 Consensus size: 23
439818 ACCACAGCTC
*
439828 ATATAATTGCACCGAAGTGCCAT
1 ATATAATTGCACCGGAGTGCCAT
*
439851 ATATAATTGCACCGGAGTGCCGT
1 ATATAATTGCACCGGAGTGCCAT
* * *
439874 GTAGAATTGCACCGTAGTGCCAT
1 ATATAATTGCACCGGAGTGCCAT
**
439897 ATAATAATTGCACCGGAGTGCCCC
1 AT-ATAATTGCACCGGAGTGCCAT
* * *
439921 GTAGAATTGCACCGTAGTGCCAT
1 ATATAATTGCACCGGAGTGCCAT
439944 ATAATAAT
1 AT-ATAAT
439952 GTCCATAAGG
Statistics
Matches: 81, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
23 59 0.73
24 22 0.27
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
ATATAATTGCACCGGAGTGCCAT
Found at i:439925 original size:47 final size:47
Alignment explanation
Indices: 439832--439951 Score: 206
Period size: 47 Copynumber: 2.6 Consensus size: 47
439822 CAGCTCATAT
* **
439832 AATTGCACCGAAGTGCCATAT-ATAATTGCACCGGAGTGCCGTGTAG
1 AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCCCGTAG
439878 AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCCCGTAG
1 AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCCCGTAG
439925 AATTGCACCGTAGTGCCATATAATAAT
1 AATTGCACCGTAGTGCCATATAATAAT
439952 GTCCATAAGG
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 20 0.29
47 50 0.71
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (47 bp):
AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCCCGTAG
Found at i:440129 original size:103 final size:103
Alignment explanation
Indices: 439958--440175 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
439948 TAATGTCCAT
* * *
439958 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
440023 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
440061 AAGGACCACATATCATTCCTTAAAAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
440126 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
440164 AAGGACCACATA
1 AAGGACCACATA
440176 GACCCTCGAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:445762 original size:23 final size:23
Alignment explanation
Indices: 445736--445860 Score: 115
Period size: 23 Copynumber: 5.3 Consensus size: 23
445726 CACCACAGCT
*
445736 CATATAATTGCACCGAAGTGCCA
1 CATATAATTGCACCGGAGTGCCA
*
445759 CATATAATTGCACCGGAGTGCCG
1 CATATAATTGCACCGGAGTGCCA
* * *
445782 CGTAGAATTGCACCGTAGTGCCA
1 CATATAATTGCACCGGAGTGCCA
** *
445805 TTTAATAATTGCACCGGAGTGCCG
1 CAT-ATAATTGCACCGGAGTGCCA
* * * *
445829 CGTAGAATTGTACCGTAGTGCCA
1 CATATAATTGCACCGGAGTGCCA
*
445852 TATAATAAT
1 CAT-ATAAT
445861 GTCCATAAGG
Statistics
Matches: 80, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
23 58 0.73
24 22 0.28
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
CATATAATTGCACCGGAGTGCCA
Found at i:445825 original size:47 final size:47
Alignment explanation
Indices: 445741--445860 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
445731 CAGCTCATAT
* *
445741 AATTGCACCGAAGTGCCACAT-ATAATTGCACCGGAGTGCCGCGTAG
1 AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCGCGTAG
*
445787 AATTGCACCGTAGTGCCATTTAATAATTGCACCGGAGTGCCGCGTAG
1 AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCGCGTAG
*
445834 AATTGTACCGTAGTGCCATATAATAAT
1 AATTGCACCGTAGTGCCATATAATAAT
445861 GTCCATAAGG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 18 0.26
47 50 0.74
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (47 bp):
AATTGCACCGTAGTGCCATATAATAATTGCACCGGAGTGCCGCGTAG
Found at i:446038 original size:103 final size:103
Alignment explanation
Indices: 445867--446084 Score: 373
Period size: 103 Copynumber: 2.1 Consensus size: 103
445857 TAATGTCCAT
* *
445867 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
**
445932 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATACCCCG
* *
445970 AAGGACCACATATCATTTCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
446035 GACTTCACACATGTTCCAAAGAATACATATATACCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATACCCCG
*
446073 AAGGGCCACATA
1 AAGGACCACATA
446085 GACCCTCGAC
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 108 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATACCCCG
Found at i:447830 original size:31 final size:31
Alignment explanation
Indices: 447793--447854 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
447783 CAAACATAAG
447793 ATTGCGTGAATCGTGGAATCAAATCTGGAGC
1 ATTGCGTGAATCGTGGAATCAAATCTGGAGC
447824 ATTGCGTGAATCGTGGAATCAAATCTGGAGC
1 ATTGCGTGAATCGTGGAATCAAATCTGGAGC
447855 TTATGAATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (31 bp):
ATTGCGTGAATCGTGGAATCAAATCTGGAGC
Found at i:448523 original size:14 final size:13
Alignment explanation
Indices: 448477--448593 Score: 79
Period size: 12 Copynumber: 9.3 Consensus size: 13
448467 CTACAAGTTG
*
448477 ATATTAAAAAATTA
1 ATATT-AAAATTTA
*
448491 ATATT-TAATTT-
1 ATATTAAAATTTA
448502 AT-TTAAAATTTTA
1 ATATTAAAA-TTTA
448515 ATATTAAAA-TTA
1 ATATTAAAATTTA
* *
448527 ATATCTATAATATA
1 ATAT-TAAAATTTA
*
448541 ATATTAAAAATTA
1 ATATTAAAATTTA
*
448554 ATATT-TAATTT-
1 ATATTAAAATTTA
*
448565 AT-TTAATAAATTA
1 ATATTAA-AATTTA
448578 ATATTAAAA-TTA
1 ATATTAAAATTTA
448590 ATAT
1 ATAT
448594 CTATAATATA
Statistics
Matches: 81, Mismatches: 12, Indels: 22
0.70 0.10 0.19
Matches are distributed among these distances:
10 4 0.05
11 6 0.07
12 29 0.36
13 21 0.26
14 21 0.26
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATTAAAATTTA
Found at i:448527 original size:12 final size:12
Alignment explanation
Indices: 448484--448593 Score: 84
Period size: 13 Copynumber: 8.9 Consensus size: 12
448474 TTGATATTAA
448484 AAAATTAATATT
1 AAAATTAATATT
* *
448496 -TAATTTAT-TT
1 AAAATTAATATT
448506 AAAATTTTAATATT
1 AAAA--TTAATATT
448520 AAAATTAATATCT
1 AAAATTAATAT-T
*
448533 ATAATATAATATT
1 AAAAT-TAATATT
448546 AAAAATTAATATT
1 -AAAATTAATATT
* *
448559 -TAATTTAT-TT
1 AAAATTAATATT
448569 AATAAATTAATATT
1 -A-AAATTAATATT
448583 AAAATTAATAT
1 AAAATTAATAT
448594 CTATAATATA
Statistics
Matches: 77, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
10 4 0.05
11 14 0.18
12 17 0.22
13 24 0.31
14 18 0.23
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (12 bp):
AAAATTAATATT
Found at i:448579 original size:63 final size:63
Alignment explanation
Indices: 448477--448611 Score: 227
Period size: 63 Copynumber: 2.1 Consensus size: 63
448467 CTACAAGTTG
*
448477 ATATTAAAAAATTAATATTTAATTTATTTAAAATTTTAATATTAAAATTAATATCTATAATATA
1 ATATT-AAAAATTAATATTTAATTTATTTAAAATATTAATATTAAAATTAATATCTATAATATA
448541 ATATTAAAAATTAATATTTAATTTATTTAATAA-ATTAATATTAAAATTAATATCTATAATATA
1 ATATTAAAAATTAATATTTAATTTATTTAA-AATATTAATATTAAAATTAATATCTATAATATA
*
448604 AAATTAAA
1 ATATTAAA
448612 TATAAAACCT
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
63 61 0.90
64 7 0.10
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (63 bp):
ATATTAAAAATTAATATTTAATTTATTTAAAATATTAATATTAAAATTAATATCTATAATATA
Found at i:448592 original size:20 final size:20
Alignment explanation
Indices: 448512--448610 Score: 69
Period size: 20 Copynumber: 4.8 Consensus size: 20
448502 ATTTAAAATT
**
448512 TTAATATTAAAATTAATATC
1 TTAATATTAAAATTAATAAA
*
448532 TATAATA-TAATATTAA-AAA
1 T-TAATATTAAAATTAATAAA
*
448551 TTAATATTTAATTTATTTAATAAA
1 TTAATA-TTAA---AATTAATAAA
**
448575 TTAATATTAAAATTAATATC
1 TTAATATTAAAATTAATAAA
448595 TATAATA-TAAAATTAA
1 T-TAATATTAAAATTAA
448611 ATATAAAACC
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
18 5 0.08
19 2 0.03
20 29 0.46
21 10 0.16
23 8 0.13
24 9 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATATTAAAATTAATAAA
Found at i:453583 original size:11 final size:11
Alignment explanation
Indices: 453567--453614 Score: 60
Period size: 11 Copynumber: 4.1 Consensus size: 11
453557 GAATTTGAGA
453567 TTTGAGTGTGG
1 TTTGAGTGTGG
453578 TTTGAGTGTGG
1 TTTGAGTGTGG
453589 TTTGGAGGTTGTGG
1 TTT-GA-G-TGTGG
*
453603 TTTGGGTGTGG
1 TTTGAGTGTGG
453614 T
1 T
453615 ATTTATAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 20 0.61
12 3 0.09
13 2 0.06
14 8 0.24
ACGTcount: A:0.06, C:0.00, G:0.48, T:0.46
Consensus pattern (11 bp):
TTTGAGTGTGG
Found at i:454846 original size:42 final size:42
Alignment explanation
Indices: 454792--454905 Score: 135
Period size: 41 Copynumber: 2.7 Consensus size: 42
454782 CGTTTTTTTA
454792 AACAAACGCCGTAATAGAGTGGTAATTTAGCGGCGTTTATAGC
1 AACAAACGCCGTAATAGAGTGGTAATTTAGCGGCGTTT-TAGC
* * * **
454835 -TCAAACGCCGTAATAGAGT--TATTTATAGTGGCGTTTTTTC
1 AACAAACGCCGTAATAGAGTGGTAATT-TAGCGGCGTTTTAGC
*
454875 AACAAACGCCGCAATAGAGTGGTAATTTAGC
1 AACAAACGCCGTAATAGAGTGGTAATTTAGC
454906 AGAATTTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
40 6 0.10
41 27 0.47
42 21 0.36
43 4 0.07
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (42 bp):
AACAAACGCCGTAATAGAGTGGTAATTTAGCGGCGTTTTAGC
Found at i:454891 original size:83 final size:82
Alignment explanation
Indices: 454785--454996 Score: 237
Period size: 82 Copynumber: 2.6 Consensus size: 82
454775 TTAGCAACGT
* * *
454785 TTTTTTAAACAAACGCCGTAATAGAGTGGTAATTTAGCGGCGTTTATAGCT-CAAACGCCGTAAT
1 TTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCGTTTATA--TACAAACGCCGCAAT
454849 AGAGTTATTTATAGTGGCG
64 AGAGTTATTTATAGTGGCG
* ** * *
454868 TTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCAGAATTTTTATACAAACGCCGCGATAG
1 TTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCGTTTATATACAAACGCCGCAATAG
* * *
454933 TGTTGTTTATAGTGTCG
66 AGTTATTTATAGTGGCG
* * * * * **
454950 TTTGTTCAACAAATGACGCTATTGAGAAGTAATTTAGCGGCGTTTAT
1 TTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCGTTTAT
454997 CAAACAAATA
Statistics
Matches: 106, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
81 1 0.01
82 63 0.59
83 42 0.40
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34
Consensus pattern (82 bp):
TTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCGTTTATATACAAACGCCGCAATAG
AGTTATTTATAGTGGCG
Found at i:455535 original size:22 final size:22
Alignment explanation
Indices: 455510--455555 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
455500 GTTTTTTTGC
*
455510 TTTCGAATAGAAAAATAATTGT
1 TTTCGAATAGAAAAATAATAGT
* *
455532 TTTCTAATAGGAAAATAATAGT
1 TTTCGAATAGAAAAATAATAGT
455554 TT
1 TT
455556 ATGAAAACGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (22 bp):
TTTCGAATAGAAAAATAATAGT
Found at i:456951 original size:42 final size:42
Alignment explanation
Indices: 456863--456961 Score: 101
Period size: 42 Copynumber: 2.4 Consensus size: 42
456853 ATAATGCAAT
* * * * **
456863 AGTTTTGTCATTTAGTGGCGTTTCTTTAATAAACGCCGCAGT
1 AGTTTTGTCCTTTAGGGGCATTTCTTTAATAAACGCCACAAA
*
456905 AGTTTTGTCCTTTAGGGGCATTT-TTGTAATAAACGTCACAAA
1 AGTTTTGTCCTTTAGGGGCATTTCTT-TAATAAACGCCACAAA
* *
456947 AGTTTGGTCCCTTAG
1 AGTTTTGTCCTTTAG
456962 TGGAGTTTTA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 2 0.04
42 45 0.96
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (42 bp):
AGTTTTGTCCTTTAGGGGCATTTCTTTAATAAACGCCACAAA
Found at i:461446 original size:42 final size:42
Alignment explanation
Indices: 461387--461552 Score: 242
Period size: 42 Copynumber: 3.9 Consensus size: 42
461377 AGCGGCGTCA
461387 AAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGTGGG
1 AAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGTGGG
* *
461429 AAAACGCTGCAAAACATCAACACCTACTGCGGCGTTTGTGGG
1 AAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGTGGG
* * * * * *
461471 AAAACGCCACAAAATATCAACACCTACTGCGGCGTTTTATAGA
1 AAAACGCCGCAAAACATCAAAACCTACTGCGGCG-TTTGTGGG
*
461514 AAAACGCCGCTAAACATCAAAACCTACTGCGGCGTTTGT
1 AAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGT
461553 CTAAAAAATG
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 75 0.68
43 35 0.32
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (42 bp):
AAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGTGGG
Found at i:461605 original size:86 final size:85
Alignment explanation
Indices: 461386--461668 Score: 295
Period size: 86 Copynumber: 3.3 Consensus size: 85
461376 TAGCGGCGTC
* * * ** * *
461386 AAAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGTGGGAAAACGCTGCAAAACATCAACA
1 AAAAACGCCGCAAAATATCAACACCTACTGCGGCGTTTTTATGAAAACGCCGCTAAACATCAACA
**
461451 CCTACTGCGGCGTTTGT-GG
66 CCTACTGCGGCGTTTGTCTA
* *
461470 GAAAACGCCACAAAATATCAACACCTACTGCGGCG-TTTTATAGAAAAACGCCGCTAAACATCAA
1 AAAAACGCCGCAAAATATCAACACCTACTGCGGCGTTTTTAT-G-AAAACGCCGCTAAACATCAA
*
461534 AACCTACTGCGGCGTTTGTCTA
64 CACCTACTGCGGCGTTTGTCTA
* * * * *
461556 AAAAATGCCGCTAAATATCAACACTTATTGCGGCGTTTTTATGACAAACGCCGCTAAATATCAAC
1 AAAAACGCCGCAAAATATCAACACCTACTGCGGCGTTTTTATGA-AAACGCCGCTAAACATCAAC
* * *
461621 ACCTATTGCGGCTTTTTTCTGA
65 ACCTACTGCGGCGTTTGTCT-A
* *
461643 CAAAAA--CTGCTAAATATCAACACCTA
1 -AAAAACGCCGCAAAATATCAACACCTA
461669 TTACGACATT
Statistics
Matches: 167, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
83 3 0.02
84 32 0.19
85 37 0.22
86 83 0.50
87 7 0.04
88 5 0.03
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (85 bp):
AAAAACGCCGCAAAATATCAACACCTACTGCGGCGTTTTTATGAAAACGCCGCTAAACATCAACA
CCTACTGCGGCGTTTGTCTA
Found at i:461638 original size:43 final size:43
Alignment explanation
Indices: 461388--461668 Score: 262
Period size: 43 Copynumber: 6.6 Consensus size: 43
461378 GCGGCGTCAA
* * * * **
461388 AAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGTGGGA-
1 AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTATGAC
* * * * **
461430 AAACGCTGCAAAACATCAACACCTACTGCGGCGTTTGTGGGA-
1 AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTATGAC
* * *
461472 AAACGCCACAAAATATCAACACCTACTGCGGCG-TTTTATAGAA
1 AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTAT-GAC
* * * * * *
461515 AAACGCCGCTAAACATCAAAACCTACTGCGGCGTTTGTCTAAA
1 AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTATGAC
* * *
461558 AAATGCCGCTAAATATCAACACTTATTGCGGCGTTTTTATGAC
1 AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTATGAC
* * *
461601 AAACGCCGCTAAATATCAACACCTATTGCGGCTTTTTTCTGAC
1 AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTATGAC
** *
461644 AAAAACTGCTAAATATCAACACCTA
1 AAACGCCGCTAAATATCAACACCTA
461669 TTACGACATT
Statistics
Matches: 205, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
41 3 0.01
42 72 0.35
43 126 0.61
44 4 0.02
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAATATCAACACCTACTGCGGCGTTTTTATGAC
Found at i:461681 original size:129 final size:128
Alignment explanation
Indices: 461386--461711 Score: 291
Period size: 129 Copynumber: 2.5 Consensus size: 128
461376 TAGCGGCGTC
* * * * * *** * * *
461386 AAAAACGCCGCAAAACATCAAAACCTACTGCGGCGTTTGT-GGGAAAACGCTGCAAAACATCAAC
1 AAAAACACCGCTAAACATCAAAACCTACTACGACATTTGTCACAAAAACGCCGCTAAATATCAAC
*
461450 ACCTACTGCGGCGTTTGTGGGAAAACGCCACAAAATATCAACACCTACTGCGGCGTTTTATAG
66 ACCTACTGCGGCGTTTGTAGGAAAACGCCACAAAATATCAACACCTACTGCGGCGTTTTATAG
* * * * *
461513 AAAAACGCCGCTAAACATCAAAACCTACTGCGGCGTTTGTCTA-AAAAATGCCGCTAAATATCAA
1 AAAAACACCGCTAAACATCAAAACCTACTACGACATTTGTC-ACAAAAACGCCGCTAAATATCAA
* * * * * * * * *
461577 CACTTATTGCGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCGGC-TTTTTTCT
65 CACCTACTGCGGCGTTTGTAGGA-AAACGCCACAAAATATCAACACCTACTGCGGCGTTTTAT-A
461641 G
128 G
* * * * * *
461642 ACAAAA-ACTGCTAAATATCAACACCTATTACGACATTTGTCACACAAACGCCGCTAAATACCAA
1 A-AAAACACCGCTAAACATCAAAACCTACTACGACATTTGTCACAAAAACGCCGCTAAATATCAA
*
461706 TACCTA
65 CACCTA
461712 TTGTGACATT
Statistics
Matches: 163, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
127 39 0.24
128 40 0.25
129 80 0.49
130 4 0.02
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (128 bp):
AAAAACACCGCTAAACATCAAAACCTACTACGACATTTGTCACAAAAACGCCGCTAAATATCAAC
ACCTACTGCGGCGTTTGTAGGAAAACGCCACAAAATATCAACACCTACTGCGGCGTTTTATAG
Found at i:461689 original size:43 final size:43
Alignment explanation
Indices: 461520--461722 Score: 133
Period size: 43 Copynumber: 4.7 Consensus size: 43
461510 TAGAAAAACG
* * * * * *
461520 CCGCTAAACATCAAAACCTACTGCGGCGTTTGTCTA-A-AAAATG
1 CCGCTAAATATCAACACCTATTGCGACATTTGTC-ACACAAAA-A
* * * * * **
461563 CCGCTAAATATCAACACTTATTGCGGCGTTT-TTATGACAAACG
1 CCGCTAAATATCAACACCTATTGCGACATTTGTCA-CACAAAAA
* * * **
461606 CCGCTAAATATCAACACCTATTGCGGCTTTTTTCTGACAAAAA
1 CCGCTAAATATCAACACCTATTGCGACATTTGTCACACAAAAA
* * **
461649 CTGCTAAATATCAACACCTATTACGACATTTGTCACACAAACG
1 CCGCTAAATATCAACACCTATTGCGACATTTGTCACACAAAAA
* * *
461692 CCGCTAAATACCAATACCTATTGTGACATTT
1 CCGCTAAATATCAACACCTATTGCGACATTT
461723 TTTGTTTAAA
Statistics
Matches: 130, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 124 0.95
44 4 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (43 bp):
CCGCTAAATATCAACACCTATTGCGACATTTGTCACACAAAAA
Found at i:461689 original size:86 final size:85
Alignment explanation
Indices: 461430--461714 Score: 225
Period size: 86 Copynumber: 3.3 Consensus size: 85
461420 GTTTGTGGGA
* * * * * *** * * *
461430 AAACGCTGCAAAACATCAACACCTACTGCGGCGTTTGTGGGAAAACGCCACAAAATATCAACACC
1 AAACGCCGCTAAATATCAAAACCTATTGCGGCGTTTGTCTAAAAAAGCCGCTAAATATCAACACC
* * * * * *
461495 TACTGCGGCGTTTT-ATAGAA
66 TATTACGACATTTTCAT-CAC
* *
461515 AAACGCCGCTAAACATCAAAACCTACTGCGGCGTTTGTCTAAAAAATGCCGCTAAATATCAACAC
1 AAACGCCGCTAAATATCAAAACCTATTGCGGCGTTTGTCTAAAAAA-GCCGCTAAATATCAACAC
* * * * * *
461580 TTATTGCGGCGTTTTTATGAC
65 CTATTACGACATTTTCATCAC
* * * *
461601 AAACGCCGCTAAATATCAACACCTATTGCGGCTTTTTTCTGACAAAAA-CTGCTAAATATCAACA
1 AAACGCCGCTAAATATCAAAACCTATTGCGGCGTTTGTCT-A-AAAAAGCCGCTAAATATCAACA
461665 CCTATTACGACATTTGTCA-CAC
64 CCTATTACGACATTT-TCATCAC
* *
461687 AAACGCCGCTAAATACCAATACCTATTG
1 AAACGCCGCTAAATATCAAAACCTATTG
461715 TGACATTTTT
Statistics
Matches: 169, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
85 39 0.23
86 120 0.71
87 5 0.03
88 5 0.03
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (85 bp):
AAACGCCGCTAAATATCAAAACCTATTGCGGCGTTTGTCTAAAAAAGCCGCTAAATATCAACACC
TATTACGACATTTTCATCAC
Found at i:463825 original size:9 final size:9
Alignment explanation
Indices: 463813--464052 Score: 89
Period size: 9 Copynumber: 26.6 Consensus size: 9
463803 TTGAAACAAT
463813 TATAATATA
1 TATAATATA
463822 TATAA-ACTA
1 TATAATA-TA
463831 TATAATA-A
1 TATAATATA
463839 TATAATATA
1 TATAATATA
463848 TATAA-ACTA
1 TATAATA-TA
* *
463857 TATAGTTTA
1 TATAATATA
463866 T-TAATATA
1 TATAATATA
*
463874 -A-ACTATA
1 TATAATATA
463881 TATAA-ACTA
1 TATAATA-TA
*
463890 TATAGT-T-
1 TATAATATA
*
463897 TAT-ATTTA
1 TATAATATA
*
463905 TATTAT-TA
1 TATAATATA
*
463913 TATACTATA
1 TATAATATA
463922 TATAAACTATA
1 TAT-AA-TATA
* *
463933 TATATTATG
1 TATAATATA
463942 TATAAACTATA
1 TAT-AA-TATA
463953 TATAA-ACTA
1 TATAATA-TA
*
463962 TATAGTGTATA
1 TATA--ATATA
463973 TATGAAGTATA
1 TAT-AA-TATA
*
463984 TATATTATA
1 TATAATATA
*
463993 TATATTA-A
1 TATAATATA
464001 CTAT-ATATA
1 -TATAATATA
464010 TA-AATTATA
1 TATAA-TATA
**
464019 TATTTTATA
1 TATAATATA
464028 TATAA-ATTA
1 TATAATA-TA
464037 TATGAATTATA
1 TAT-AA-TATA
464048 TATAA
1 TATAA
464053 ACTATACAAC
Statistics
Matches: 175, Mismatches: 23, Indels: 65
0.67 0.09 0.25
Matches are distributed among these distances:
6 1 0.01
7 9 0.05
8 35 0.20
9 86 0.49
10 11 0.06
11 30 0.17
12 3 0.02
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (9 bp):
TATAATATA
Found at i:463834 original size:11 final size:11
Alignment explanation
Indices: 463818--464058 Score: 105
Period size: 11 Copynumber: 22.4 Consensus size: 11
463808 ACAATTATAA
463818 TATATATAAAC
1 TATATATAAAC
*
463829 TATATAATAATATAA
1 TATAT-AT-A-A-AC
463844 TATATATAAAC
1 TATATATAAAC
** *
463855 TATATAGTTTAT
1 TATATA-TAAAC
463867 TA-ATATAAAC
1 TATATATAAAC
463877 TATATATAAAC
1 TATATATAAAC
*
463888 TATATAGT---T
1 TATATA-TAAAC
* * *
463897 TATATTTATAT
1 TATATATAAAC
*
463908 TAT-TATATAC
1 TATATATAAAC
463918 TATATATAAAC
1 TATATATAAAC
*
463929 TATATAT--AT
1 TATATATAAAC
*
463938 TATGTATAAAC
1 TATATATAAAC
463949 TATATATAAAC
1 TATATATAAAC
*
463960 TATATAGT---G
1 TATATA-TAAAC
* *
463969 TATATATGAAG
1 TATATATAAAC
*
463980 TATATATATTA-
1 TATATATA-AAC
*
463991 TATATATTAAC
1 TATATATAAAC
*
464002 TATATATATAAA
1 TATATATA-AAC
***
464014 T-TATATATTT
1 TATATATAAAC
464024 TATATATAAA-
1 TATATATAAAC
* *
464034 T-TATATGAAT
1 TATATATAAAC
464044 TATATATAAAC
1 TATATATAAAC
464055 TATA
1 TATA
464059 CAACTTATAT
Statistics
Matches: 175, Mismatches: 32, Indels: 46
0.69 0.13 0.18
Matches are distributed among these distances:
8 2 0.01
9 25 0.14
10 16 0.09
11 108 0.62
12 13 0.07
13 2 0.01
14 3 0.02
15 6 0.03
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (11 bp):
TATATATAAAC
Found at i:463849 original size:26 final size:26
Alignment explanation
Indices: 463813--463934 Score: 96
Period size: 26 Copynumber: 4.8 Consensus size: 26
463803 TTGAAACAAT
463813 TATAATATATATAAACTATATAATAA
1 TATAATATATATAAACTATATAATAA
*
463839 TATAATATATATAAACTATATAGT--
1 TATAATATATATAAACTATATAATAA
*
463863 T-TATTA-ATATAAACTATAT-ATAA
1 TATAATATATATAAACTATATAATAA
* ** * *
463886 -ACT-ATATAGTTTATATTTATATTATTA
1 TA-TAATATA-TATA-AACTATATAATAA
*
463913 TATACTATATATAAACTATATA
1 TATAATATATATAAACTATATA
463935 TATTATGTAT
Statistics
Matches: 73, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
21 1 0.01
22 13 0.18
23 6 0.08
24 3 0.04
25 3 0.04
26 35 0.48
27 7 0.10
28 5 0.07
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (26 bp):
TATAATATATATAAACTATATAATAA
Found at i:463892 original size:20 final size:20
Alignment explanation
Indices: 463818--464058 Score: 107
Period size: 20 Copynumber: 11.8 Consensus size: 20
463808 ACAATTATAA
463818 TATATATAAACTATAT-AA-
1 TATATATAAACTATATAAAC
463836 TA-ATATAATA-TATATAAAC
1 TATATATAA-ACTATATAAAC
** *
463855 TATATAGTTTATTAATATAAAC
1 TATATA-TAAACT-ATATAAAC
***
463877 TATATATAAACTATATAGTT
1 TATATATAAACTATATAAAC
* * * *
463897 TATATTTATATTATTATATAC
1 TATATATAAACTA-TATAAAC
* *
463918 TATATATAAACTATATATAT
1 TATATATAAACTATATAAAC
*
463938 TATGTATAAACTATATATAAAC
1 TATATATAAAC--TATATAAAC
** * *
463960 TATATAGTGTA-TATATGAAG
1 TATATA-TAAACTATATAAAC
*
463980 TATATATATTATA-TATATTAAC
1 TATATATA--A-ACTATATAAAC
* ***
464002 TATATATATAAATTATATATTT
1 --TATATATAAACTATATAAAC
* * *
464024 TATATATAAATTATATGAAT
1 TATATATAAACTATATAAAC
464044 TATATATAAACTATA
1 TATATATAAACTATA
464059 CAACTTATAT
Statistics
Matches: 168, Mismatches: 38, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
17 11 0.07
18 5 0.03
19 3 0.02
20 79 0.47
21 20 0.12
22 40 0.24
23 2 0.01
24 8 0.05
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (20 bp):
TATATATAAACTATATAAAC
Done.