Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008804.1 Hibiscus syriacus cultivar Beakdansim tig00111957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 529415
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 1 of 3
Found at i:1704 original size:34 final size:32
Alignment explanation
Indices: 1642--1710 Score: 84
Period size: 34 Copynumber: 2.1 Consensus size: 32
1632 ACCTTACAAC
* * *
1642 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACATT
*
1674 TCCCTAGCTTTTACACGGGATAAGCTAGAACATT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACATT
1708 TCC
1 TCC
1711 TCTTTACAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 7 0.23
33 5 0.16
34 19 0.61
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACATT
Found at i:2196 original size:13 final size:13
Alignment explanation
Indices: 2175--2226 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
2165 TTAGTACAGG
*
2175 TGCATGGATGCAC
1 TGCAGGGATGCAC
2188 TGCAGGGATGCAC
1 TGCAGGGATGCAC
2201 TGCAGGGATGCA-
1 TGCAGGGATGCAC
*
2213 TGCATGGATGCAC
1 TGCAGGGATGCAC
2226 T
1 T
2227 TTGACACCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.31
13 25 0.69
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.21
Consensus pattern (13 bp):
TGCAGGGATGCAC
Found at i:2327 original size:29 final size:29
Alignment explanation
Indices: 2295--2357 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
2285 TAAACCTTTT
2295 AAAACTTTGAATAAATTCAA-TTAAGTCCAA
1 AAAACTTTG--TAAATTCAATTTAAGTCCAA
*
2325 AAATATTTTGTAAATTCAATTTAAGTCCAA
1 AAA-ACTTTGTAAATTCAATTTAAGTCCAA
2355 AAA
1 AAA
2358 TATTTTGCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 9 0.30
30 16 0.53
31 5 0.17
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.33
Consensus pattern (29 bp):
AAAACTTTGTAAATTCAATTTAAGTCCAA
Found at i:2351 original size:30 final size:29
Alignment explanation
Indices: 2306--2364 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 29
2296 AAACTTTGAA
2306 TAAATTCAATTAAGTCCAAAAATATTTTG
1 TAAATTCAATTAAGTCCAAAAATATTTTG
2335 TAAATTCAATTTAAGTCCAAAAATATTTTG
1 TAAATTCAA-TTAAGTCCAAAAATATTTTG
2365 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (29 bp):
TAAATTCAATTAAGTCCAAAAATATTTTG
Found at i:3254 original size:34 final size:33
Alignment explanation
Indices: 3169--3267 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
3159 ATTTGGCAAG
3169 TTGGAAAATTCATCTTGGTTGGTGGCCAACTTA
1 TTGGAAAATTCATCTTGGTTGGTGGCCAACTTA
*
3202 TTGG-AAATTGCAACTTGGTTGGTGGCCAACTTA
1 TTGGAAAATT-CATCTTGGTTGGTGGCCAACTTA
*
3235 TTGGAAAATTCATCTTTGGTAGGTGGCCAACTT
1 TTGGAAAATTCATC-TTGGTTGGTGGCCAACTT
3268 TGCACATGGG
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
32 5 0.08
33 33 0.55
34 22 0.37
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (33 bp):
TTGGAAAATTCATCTTGGTTGGTGGCCAACTTA
Found at i:7299 original size:18 final size:18
Alignment explanation
Indices: 7257--7302 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
7247 TAGTTTGATT
*
7257 AATGAAATAACATTATTC
1 AATGAACTAACATTATTC
*
7275 AATGAACTAACTTTATTC
1 AATGAACTAACATTATTC
7293 AATGAACTAA
1 AATGAACTAA
7303 TAAAGATGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.33
Consensus pattern (18 bp):
AATGAACTAACATTATTC
Found at i:11148 original size:14 final size:14
Alignment explanation
Indices: 11126--11155 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11116 GATTCAAGTC
*
11126 AGATTCAGATTTAA
1 AGATACAGATTTAA
11140 AGATACAGATTTAA
1 AGATACAGATTTAA
11154 AG
1 AG
11156 TGAAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.30
Consensus pattern (14 bp):
AGATACAGATTTAA
Found at i:13761 original size:75 final size:75
Alignment explanation
Indices: 13673--13824 Score: 268
Period size: 75 Copynumber: 2.0 Consensus size: 75
13663 TGGACTCGAG
* *
13673 TGTTGGTGAGAAAGATTCTCATGGTGTTCGTGTTGTTGCTGAAAATTTAAAGGGTGAGGGAAAAC
1 TGTTGGTGAGAAAGATTCTCATGGTGTTCGTGTTGTTACTGAAAATTTAAAGGGTAAGGGAAAAC
13738 AGATTGTTGT
66 AGATTGTTGT
* *
13748 TGTTGGTGAGAAAGATTCTCATGGTGTTCGTGTTGTTACTGAGAATTTACAGGGTAAGGGAAAAC
1 TGTTGGTGAGAAAGATTCTCATGGTGTTCGTGTTGTTACTGAAAATTTAAAGGGTAAGGGAAAAC
13813 AGATTGTTGT
66 AGATTGTTGT
13823 TG
1 TG
13825 CTGCTGCTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.26, C:0.07, G:0.32, T:0.35
Consensus pattern (75 bp):
TGTTGGTGAGAAAGATTCTCATGGTGTTCGTGTTGTTACTGAAAATTTAAAGGGTAAGGGAAAAC
AGATTGTTGT
Found at i:14586 original size:31 final size:31
Alignment explanation
Indices: 14511--14613 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
14501 TTAATCTGTG
* * *
14511 ATGATTATATCTTAATTACATAAAGACAAAA
1 ATGATTATATCTTAATTAAATAAAAATAAAA
* ** *
14542 GTGACAATGTCTTAATTAAATAAAAATAAAA
1 ATGATTATATCTTAATTAAATAAAAATAAAA
14573 ATGATTATATCTTAATTAAATAAAAATAAAA
1 ATGATTATATCTTAATTAAATAAAAATAAAA
*
14604 ATGGTTATAT
1 ATGATTATAT
14614 ATTATATTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (31 bp):
ATGATTATATCTTAATTAAATAAAAATAAAA
Found at i:14908 original size:21 final size:21
Alignment explanation
Indices: 14857--14909 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
14847 ATTCTGACTA
14857 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * * *
14878 TCACGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
14899 TCGCAATGCGA
1 TCGCATTGCGA
14910 ATACGTAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:14971 original size:20 final size:20
Alignment explanation
Indices: 14899--14972 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
14889 TTTTCCTAAT
*
14899 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
* ** *
14919 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCG-ATTACGTAAA
14940 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
14960 TCGCAATGCGATT
1 TCGCAATGCGATT
14973 TACATAGCGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 29 0.66
21 15 0.34
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:15135 original size:22 final size:22
Alignment explanation
Indices: 15110--15171 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 22
15100 GGCGACATTC
15110 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
15132 GTCCCCA--T--GACGATAA-CA
1 GTCCCCATCTCCGACGA-AATCA
* *
15150 GTCTCCATCTCCGGCGAAATCA
1 GTCCCCATCTCCGACGAAATCA
15172 TTCACGGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
18 13 0.41
19 2 0.06
20 2 0.06
21 2 0.06
22 13 0.41
ACGTcount: A:0.27, C:0.37, G:0.16, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:15528 original size:20 final size:20
Alignment explanation
Indices: 15503--15551 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
15493 CAACGAGTGA
15503 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
15523 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
15543 ATCGCAACG
1 ATCGCAACG
15552 AGAGAATCGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:15634 original size:20 final size:20
Alignment explanation
Indices: 15564--15650 Score: 95
Period size: 20 Copynumber: 4.4 Consensus size: 20
15554 AGAATCGCAA
15564 TGCGATTTTCA-TTTCGCGT
1 TGCGATTTTCATTTTCGCGT
** **
15583 TGCGATAGTCAAATTCGCGT
1 TGCGATTTTCATTTTCGCGT
** *
15603 TGCGATAGTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
*
15623 TGCGATTTTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
15643 TGCGATTT
1 TGCGATTT
15651 AAAGTTTCAG
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
19 9 0.15
20 50 0.85
ACGTcount: A:0.15, C:0.17, G:0.23, T:0.45
Consensus pattern (20 bp):
TGCGATTTTCATTTTCGCGT
Found at i:15658 original size:20 final size:20
Alignment explanation
Indices: 15615--15658 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
15605 CGATAGTCAT
** *
15615 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTAAAG
15635 TTTCGTGTTGCGATTTAAAG
1 TTTCGTGTTGCGATTTAAAG
15655 TTTC
1 TTTC
15659 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.52
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTAAAG
Found at i:17548 original size:20 final size:20
Alignment explanation
Indices: 17523--17646 Score: 134
Period size: 20 Copynumber: 6.5 Consensus size: 20
17513 AGAATAGTTT
17523 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
17543 ACTATCGCAACGCGAAAATT
1 ACTATCGCAATGCGAAAATG
*
17563 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
* *
17579 A--ATAGCAATGCAAAAATG
1 ACTATCGCAATGCGAAAATG
*
17597 ACTATCGCAATGCAAAAATG
1 ACTATCGCAATGCGAAAATG
**
17617 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
17637 ACTATCGCAA
1 ACTATCGCAA
17647 CGAAAGCATC
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
14 6 0.07
16 2 0.02
17 4 0.05
18 4 0.05
20 71 0.82
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:17661 original size:74 final size:73
Alignment explanation
Indices: 17523--17670 Score: 208
Period size: 74 Copynumber: 2.0 Consensus size: 73
17513 AGAATAGTTT
* *
17523 ACTATCGCAATGCGAAAATGACTATCGCAACGCGAAAATTACTATCGCAACGAGAGAATAGCAAT
1 ACTATCGCAATGCAAAAATGACTATCGCAACGCGAAAATTACTATCGCAACGAAAGAATAGCAAT
17588 GCAAAAATG
66 G-AAAAATG
* * * *
17597 ACTATCGCAATGCAAAAATGACTATCGCAATGCG-AATTTGACTATCGCAACGAAAGCATCGCAA
1 ACTATCGCAATGCAAAAATGACTATCGCAACGCGAAAATT-ACTATCGCAACGAAAGAATAGCAA
*
17661 TGAGAAATG
65 TGAAAAATG
17670 A
1 A
17671 AAATCGCATT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
73 11 0.17
74 55 0.83
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (73 bp):
ACTATCGCAATGCAAAAATGACTATCGCAACGCGAAAATTACTATCGCAACGAAAGAATAGCAAT
GAAAAATG
Found at i:17721 original size:20 final size:20
Alignment explanation
Indices: 17696--17739 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
17686 TCTCTCGTTC
17696 CGATAGTCAAATTCGCATTG
1 CGATAGTCAAATTCGCATTG
** *
17716 CGATAGTCATTTTTGCATTG
1 CGATAGTCAAATTCGCATTG
17736 CGAT
1 CGAT
17740 TTTGTTGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (20 bp):
CGATAGTCAAATTCGCATTG
Found at i:17751 original size:34 final size:34
Alignment explanation
Indices: 17713--17806 Score: 109
Period size: 33 Copynumber: 2.8 Consensus size: 34
17703 CAAATTCGCA
* * * *
17713 TTGCGATAGTCATTTTTGCATTGCGATTTTGTTG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
**
17747 TTGCGATTTTCA-TTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
* *
17780 TTACGATAGTCATTTTCGCGTTGCGAT
1 TTGCGATAGTCATTTTCGCATTGCGAT
17807 AGTCATTTGC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
33 26 0.53
34 23 0.47
ACGTcount: A:0.15, C:0.18, G:0.21, T:0.46
Consensus pattern (34 bp):
TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
Found at i:18381 original size:21 final size:21
Alignment explanation
Indices: 18290--18394 Score: 86
Period size: 21 Copynumber: 5.0 Consensus size: 21
18280 GACTCACCTG
*
18290 TCATCGTTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
* *
18312 T-ATCATTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
18332 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
18353 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
* *
18374 TCATCGTTGAAGAGGTCCCTC
1 TCATCGTTCAAGAGGCCCCTC
18395 CCAACATTCT
Statistics
Matches: 62, Mismatches: 20, Indels: 3
0.73 0.24 0.04
Matches are distributed among these distances:
20 3 0.05
21 58 0.94
22 1 0.02
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:18387 original size:42 final size:42
Alignment explanation
Indices: 18317--18397 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
18307 TCCCCTATCA
*
18317 TTCAAGAGGCCCCTATCATCCCTCAAGA-GTCCCCTCCCACCG
1 TTCAAGAGGCCACTATCATCCCTCAAGAGGT-CCCTCCCACCG
* ** *
18359 TTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCA
1 TTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCA
18398 ACATTCTAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.38, G:0.19, T:0.21
Consensus pattern (42 bp):
TTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCACCG
Found at i:19781 original size:14 final size:14
Alignment explanation
Indices: 19732--19781 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
19722 TTATTATTTT
*
19732 TTGA-TTGTTTAA-
1 TTGATTTGTTAAAG
*
19744 TTGATTTGTAAAAG
1 TTGATTTGTTAAAG
* *
19758 ATGATTTGTTAATG
1 TTGATTTGTTAAAG
19772 TTGATTTGTT
1 TTGATTTGTT
19782 TAATTGATGT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
12 4 0.13
13 6 0.20
14 20 0.67
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (14 bp):
TTGATTTGTTAAAG
Found at i:19970 original size:34 final size:33
Alignment explanation
Indices: 19882--19977 Score: 120
Period size: 33 Copynumber: 2.8 Consensus size: 33
19872 AAAACAGACT
* **
19882 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
*
19916 ATCGCAATGCGAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
19949 ATTGCAATGCGAAAATGAAAATCACAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
19978 TGAAACTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 30 0.55
34 25 0.45
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:20052 original size:19 final size:19
Alignment explanation
Indices: 19986--20073 Score: 114
Period size: 19 Copynumber: 4.8 Consensus size: 19
19976 CGTGAAACTA
*
19986 ATTTCGCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
20005 ATTTTCGCATTGCGA--TTC
1 A-TTTCGCATTGCGATTTTC
*
20023 A-CTCG--TTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
20039 ATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
20058 ATTTCGCATTGCGATT
1 ATTTCGCATTGCGATT
20074 CTCTCGTTGC
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
14 6 0.10
16 7 0.12
17 3 0.05
18 4 0.07
19 28 0.47
20 12 0.20
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (19 bp):
ATTTCGCATTGCGATTTTC
Found at i:20103 original size:20 final size:20
Alignment explanation
Indices: 20078--20166 Score: 117
Period size: 20 Copynumber: 4.5 Consensus size: 20
20068 GCGATTCTCT
*
20078 CGTTGCAATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
20098 CGTTGCGATAGTCAATTCCA
1 CGTTGCGATAGTCATTTCCG
*
20118 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
20138 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
20158 CGTTGCGAT
1 CGTTGCGAT
20167 TTCTGCGTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:20104 original size:53 final size:53
Alignment explanation
Indices: 19986--20106 Score: 181
Period size: 52 Copynumber: 2.3 Consensus size: 53
19976 CGTGAAACTA
* **
19986 ATTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCAATAGTC
* *
20039 ATTTCGCATTGCGATTTTCA-TTTCGCATTGCGATTCTCTCGTTGCAATAGTC
1 ATTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCAATAGTC
20091 ATTTCCGCGTTGCGAT
1 ATTT-CGCGTTGCGAT
20107 AGTCAATTCC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 32 0.52
53 29 0.48
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.43
Consensus pattern (53 bp):
ATTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCAATAGTC
Found at i:20143 original size:40 final size:41
Alignment explanation
Indices: 20080--20156 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 41
20070 GATTCTCTCG
20080 TTGCAATAGTCATTTCCGCGTTGCGATAGTCA-ATTCCACA
1 TTGCAATAGTCATTTCCGCGTTGCGATAGTCATATTCCACA
* *
20120 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTC
1 TTGCAATAGTCATTTCCGCGTTGCGATAGTCATATTC
20157 GCGTTGCGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 30 0.88
41 4 0.12
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (41 bp):
TTGCAATAGTCATTTCCGCGTTGCGATAGTCATATTCCACA
Found at i:23514 original size:20 final size:20
Alignment explanation
Indices: 23489--23542 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
23479 AAATTCAGTA
23489 TTGCGATAGT-CAGAATCTCG
1 TTGCGAT-GTACAGAATCTCG
*
23509 TTGCGATTTACAGAATCTCG
1 TTGCGATGTACAGAATCTCG
* *
23529 TTGTGATTTACAGA
1 TTGCGATGTACAGA
23543 TTCGCATTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (20 bp):
TTGCGATGTACAGAATCTCG
Found at i:23556 original size:20 final size:20
Alignment explanation
Indices: 23533--23655 Score: 176
Period size: 20 Copynumber: 6.1 Consensus size: 20
23523 ATCTCGTTGT
23533 GATTTACAG-ATTCGCATTGC
1 GATTTAC-GTATTCGCATTGC
23553 GATTTACGTATTCGCATTGC
1 GATTTACGTATTCGCATTGC
23573 GATTTACGTATTCGCATTGC
1 GATTTACGTATTCGCATTGC
*
23593 GATTTACGTAATCGCATTGC
1 GATTTACGTATTCGCATTGC
* ** *
23613 GATTTTCCAAATTCGCGTTGC
1 GA-TTTACGTATTCGCATTGC
23634 GATTTACGTATTCGCATTGC
1 GATTTACGTATTCGCATTGC
23654 GA
1 GA
23656 ATTAGGAAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
19 1 0.01
20 75 0.82
21 15 0.16
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (20 bp):
GATTTACGTATTCGCATTGC
Found at i:23573 original size:60 final size:60
Alignment explanation
Indices: 23509--23655 Score: 156
Period size: 61 Copynumber: 2.4 Consensus size: 60
23499 CAGAATCTCG
* * **
23509 TTGCGATTTACAGAATCTCG-TTGTGATTTACAG-ATTCGCATTGCGA-TTTACGTATTCGCA
1 TTGCGATTTAC-GAAT-TCGATTGCGATTTAC-GTAATCGCATTGCGATTTTACAAATTCGCA
* * *
23569 TTGCGATTTACGTATTCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCGCG
1 TTGCGATTTACGAATTCG-ATTGCGATTTACGTAATCGCATTGCGATTTTACAAATTCGCA
*
23630 TTGCGATTTACGTATTCGCATTGCGA
1 TTGCGATTTACGAATTCG-ATTGCGA
23656 ATTAGGAAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
58 3 0.04
59 4 0.05
60 33 0.43
61 36 0.47
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (60 bp):
TTGCGATTTACGAATTCGATTGCGATTTACGTAATCGCATTGCGATTTTACAAATTCGCA
Found at i:23633 original size:21 final size:21
Alignment explanation
Indices: 23509--23655 Score: 112
Period size: 20 Copynumber: 7.3 Consensus size: 21
23499 CAGAATCTCG
23509 TTGCGATTTA-CAGAATCTCG--
1 TTGCGATTTACCA-AAT-TCGCA
* *
23529 TTGTGATTTA-CAGATTCGCA
1 TTGCGATTTACCAAATTCGCA
**
23549 TTGCGATTTA-CGTATTCGCA
1 TTGCGATTTACCAAATTCGCA
**
23569 TTGCGATTTA-CGTATTCGCA
1 TTGCGATTTACCAAATTCGCA
**
23589 TTGCGATTTACGTAA-TCGCA
1 TTGCGATTTACCAAATTCGCA
* *
23609 TTGCGATTTTCCAAATTCGCG
1 TTGCGATTTACCAAATTCGCA
**
23630 TTGCGATTTA-CGTATTCGCA
1 TTGCGATTTACCAAATTCGCA
23650 TTGCGA
1 TTGCGA
23656 ATTAGGAAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
18 3 0.03
19 2 0.02
20 88 0.82
21 14 0.13
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGCGATTTACCAAATTCGCA
Found at i:23676 original size:21 final size:21
Alignment explanation
Indices: 23652--23692 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23642 TATTCGCATT
23652 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* *
23673 GCGAATTTGGGAAATCGCAA
1 GCGAATTAGGAAAATCGCAA
23693 TTCGATAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:26559 original size:13 final size:13
Alignment explanation
Indices: 26543--26567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26533 TGAATTTTAT
26543 AATAACTTATAAA
1 AATAACTTATAAA
26556 AATAACTTATAA
1 AATAACTTATAA
26568 TAAAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAACTTATAAA
Found at i:45998 original size:10 final size:10
Alignment explanation
Indices: 45983--46018 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
45973 TTGAATGTGG
45983 TATATAACTA
1 TATATAACTA
45993 TATATAACTA
1 TATATAACTA
46003 TATATATA-TA
1 TATATA-ACTA
46013 TATATA
1 TATATA
46019 TATAGTGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 24 0.96
11 1 0.04
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (10 bp):
TATATAACTA
Found at i:46715 original size:19 final size:21
Alignment explanation
Indices: 46691--46737 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
46681 GAATGTGTGA
*
46691 ATATTTTGTA-TT-TATATAC
1 ATATTTTATACTTATATATAC
46710 ATA-TTTATACTTTATATATAC
1 ATATTTTATAC-TTATATATAC
46731 ATATTTT
1 ATATTTT
46738 TATAATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 3 0.13
20 2 0.09
21 10 0.43
22 3 0.13
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.57
Consensus pattern (21 bp):
ATATTTTATACTTATATATAC
Found at i:51374 original size:183 final size:184
Alignment explanation
Indices: 51066--51428 Score: 638
Period size: 183 Copynumber: 2.0 Consensus size: 184
51056 TTCATTGTTG
*
51066 AGAAGGTGAATGGCGGAGCAGTAAAGCTAAACTATGTCTCTTCAAAAGATCAACTAGCCGATGTC
1 AGAAGGTGAATGGCGGAACAGTAAAGCTAAACTATGTCTCTTCAAAAGATCAACTAGCCGATGTC
*
51131 TTAACTAAGGCGCTTCCAAAGATCAATTTCGAAGAGATTACATCCAAGTTGGGTCTCTATAACTA
66 TTAACTAAGGCGCTTCCAAAGATCAATTTCGAAGAGATTACATCCAAGCTGGGTCTCTATAACTA
* *
51196 GCATCTACTCTCCAGCTTAA-GGGGAGTGTGAGTTATGTTGCGTTTAGATTGCT
131 ACATCTACTCTACAGCTTAAGGGGGAGTGTGAGTTATGTTGCGTTTAGATTGCT
* *
51249 AGAAGGTGAATGGTGGAACAGTAAAGTTAAACTATGTCTCTTCAAAAGATCAACTAGCCGATGTC
1 AGAAGGTGAATGGCGGAACAGTAAAGCTAAACTATGTCTCTTCAAAAGATCAACTAGCCGATGTC
* * *
51314 TTGACTAAGGCGTTTCCAAAGATCAATTTCGATGAGATTACATCCAAGCTGGGTCTCTATAACTA
66 TTAACTAAGGCGCTTCCAAAGATCAATTTCGAAGAGATTACATCCAAGCTGGGTCTCTATAACTA
51379 ACATCTACTCTACAGCTTAAGGGGGAGTGTGAGTTATGTTGCGTTTAGAT
131 ACATCTACTCTACAGCTTAAGGGGGAGTGTGAGTTATGTTGCGTTTAGAT
51429 GTAACTATTA
Statistics
Matches: 170, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
183 141 0.83
184 29 0.17
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (184 bp):
AGAAGGTGAATGGCGGAACAGTAAAGCTAAACTATGTCTCTTCAAAAGATCAACTAGCCGATGTC
TTAACTAAGGCGCTTCCAAAGATCAATTTCGAAGAGATTACATCCAAGCTGGGTCTCTATAACTA
ACATCTACTCTACAGCTTAAGGGGGAGTGTGAGTTATGTTGCGTTTAGATTGCT
Found at i:51459 original size:26 final size:26
Alignment explanation
Indices: 51430--51508 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 26
51420 CGTTTAGATG
* *
51430 TAACTATTAGTATCTTACTTTAACAC
1 TAACTATTAGAATCCTACTTTAACAC
* * *
51456 TAACT-CTAGAATCCTACTTTGTAGA-
1 TAACTATTAGAATCCTACTTT-AACAC
*
51481 TAACTATTAGCATCCTACTTTAACAC
1 TAACTATTAGAATCCTACTTTAACAC
51507 TA
1 TA
51509 GAATCCTACT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 19 0.46
26 22 0.54
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (26 bp):
TAACTATTAGAATCCTACTTTAACAC
Found at i:55471 original size:29 final size:31
Alignment explanation
Indices: 55437--55506 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
55427 AATTTTGGAT
55437 AGTGACTAAAATATAAAATTT-G-AAAGTTA
1 AGTGACTAAAATATAAAATTTAGAAAAGTTA
* * * *
55466 AGTGACCAAAGTATAAACTTTAGAAAAGTTT
1 AGTGACTAAAATATAAAATTTAGAAAAGTTA
*
55497 AGGGACTAAA
1 AGTGACTAAA
55507 GTGTAATTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 18 0.55
30 1 0.03
31 14 0.42
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (31 bp):
AGTGACTAAAATATAAAATTTAGAAAAGTTA
Found at i:55508 original size:31 final size:29
Alignment explanation
Indices: 55440--55508 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
55430 TTTGGATAGT
* *
55440 GACTAAAATATAAAATTTGAAAGTTAAGT
1 GACTAAAGTATAAAATTTGAAAGTTAAGG
* * *
55469 GACCAAAGTATAAACTTTAGAAAAGTTTAGG
1 GACTAAAGTATAAAATTT-G-AAAGTTAAGG
55500 GACTAAAGT
1 GACTAAAGT
55509 GTAATTTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 15 0.47
30 1 0.03
31 16 0.50
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (29 bp):
GACTAAAGTATAAAATTTGAAAGTTAAGG
Found at i:61810 original size:19 final size:19
Alignment explanation
Indices: 61786--61837 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
61776 TTGGACCCTT
*
61786 AGTGCATTGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
61805 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
*
61824 AGTGCATCGATGCA
1 AGTGCATCGGTGCA
61838 TCAAGTGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (19 bp):
AGTGCATCGGTGCACTAAG
Found at i:61905 original size:64 final size:65
Alignment explanation
Indices: 61803--61951 Score: 171
Period size: 64 Copynumber: 2.3 Consensus size: 65
61793 TGGTGCACTA
* *
61803 AGAGTGCATCGGTGCACT-AAGAGTGCATCGATGCATCAAGTGCATTCAATG-TTTCA-AAATAG
1 AGAGTGCATCGATGCA-TGAAGAGTGCATCGATGCATCAAATGCATTCAATGTTTTCATAAA-AG
61865 CC
64 CC
* * * *
61867 AGAGTGCATCGATGCATGAATG-GTGCGTCGATGTATCAAATGCATTCGATGTTTTCATAAAATC
1 AGAGTGCATCGATGCATGAA-GAGTGCATCGATGCATCAAATGCATTCAATGTTTTCATAAAAGC
61931 C
65 C
**
61932 TCAGTGCATCGATGCATGAA
1 AGAGTGCATCGATGCATGAA
61952 ATGAATTCGA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
63 1 0.01
64 42 0.58
65 27 0.37
66 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (65 bp):
AGAGTGCATCGATGCATGAAGAGTGCATCGATGCATCAAATGCATTCAATGTTTTCATAAAAGCC
Found at i:61962 original size:64 final size:62
Alignment explanation
Indices: 61830--61968 Score: 140
Period size: 64 Copynumber: 2.2 Consensus size: 62
61820 TAAGAGTGCA
* * * *
61830 TCGATGCATCAAGTGCATTCAATGTTTCAAAATAGCCAGAGTGCATCGATGCATGAATGGTGCG
1 TCGATGTATCAAATGCATTCAATGTTTCAAAATAGCCACAGTGCATCGATGCATGAATGAT--G
* * *
61894 TCGATGTATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCATGAAATGAAT
1 TCGATGTATCAAATGCATTCAATG-TTTCA-AAATAGCCACAGTGCATCGATGCATG-AATG-AT
61958 -
62 G
61958 TCGATGT-TCAA
1 TCGATGTATCAA
61969 TTTAATTCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
63 4 0.06
64 28 0.44
65 24 0.38
66 7 0.11
67 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (62 bp):
TCGATGTATCAAATGCATTCAATGTTTCAAAATAGCCACAGTGCATCGATGCATGAATGATG
Found at i:68946 original size:22 final size:22
Alignment explanation
Indices: 68921--68986 Score: 123
Period size: 22 Copynumber: 3.0 Consensus size: 22
68911 CACCACAGCT
68921 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
68943 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
*
68965 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
68987 ATATAATGAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
CGTAGAATTGCACCGAAGTGCC
Found at i:68982 original size:13 final size:13
Alignment explanation
Indices: 68921--68982 Score: 50
Period size: 10 Copynumber: 5.4 Consensus size: 13
68911 CACCACAGCT
68921 CGTAGAATTGCAC
1 CGTAGAATTGCAC
*
68934 C---GAAGTGC-C
1 CGTAGAATTGCAC
68943 CGTAGAATTGCAC
1 CGTAGAATTGCAC
*
68956 C---GAAGTGC-C
1 CGTAGAATTGCAC
68965 CGTAGAATTGCAC
1 CGTAGAATTGCAC
68978 CGTAG
1 CGTAG
68983 TGCCATATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
9 4 0.11
10 12 0.32
12 12 0.32
13 9 0.24
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.19
Consensus pattern (13 bp):
CGTAGAATTGCAC
Found at i:69643 original size:2 final size:2
Alignment explanation
Indices: 69636--69692 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
69626 TCTCTTAAAC
69636 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69678 AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
69693 TCACATGTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70721 original size:21 final size:20
Alignment explanation
Indices: 70678--70717 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
70668 TCTTGTTCGT
* *
70678 TTGAAGGGGTATCGGTTCCC
1 TTGAAGGGGTACCGATTCCC
*
70698 TTGAATGGGTACCGATTCCC
1 TTGAAGGGGTACCGATTCCC
70718 CTTGCCCAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.30
Consensus pattern (20 bp):
TTGAAGGGGTACCGATTCCC
Found at i:71729 original size:20 final size:20
Alignment explanation
Indices: 71687--71729 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
71677 TTATTTTCAT
* *
71687 TTTTTAATTTTGAAACATCA
1 TTTTTAATTTTAAAAAATCA
71707 TTTTTATATTTTAAAAAAT-A
1 TTTTTA-ATTTTAAAAAATCA
71727 TTT
1 TTT
71730 CTCATAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTTAATTTTAAAAAATCA
Found at i:73754 original size:64 final size:65
Alignment explanation
Indices: 73672--73792 Score: 183
Period size: 64 Copynumber: 1.9 Consensus size: 65
73662 CAAAGAGTGG
* *
73672 ATCGATGCATCAAGTGCATTCGATG-TTTCA-AAATAACCAGAGTGCATCGATGCATGGTTGGTG
1 ATCGATGCATCAAATGCATTCGATGTTTTCATAAA-AACCACAGTGCATCGATGCATGGTTGGTG
73735 C
65 C
* *
73736 ATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATG
1 ATCGATGCATCAAATGCATTCGATGTTTTCATAAAAACCACAGTGCATCGATGCATG
73793 AAATGCATTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
64 24 0.47
65 24 0.47
66 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (65 bp):
ATCGATGCATCAAATGCATTCGATGTTTTCATAAAAACCACAGTGCATCGATGCATGGTTGGTGC
Found at i:73805 original size:64 final size:64
Alignment explanation
Indices: 73672--73806 Score: 159
Period size: 64 Copynumber: 2.1 Consensus size: 64
73662 CAAAGAGTGG
* * ***
73672 ATCGATGCATCAAGTGCATTCGATGTTTCAAAATAACCAGAGTGCATCGATGCATGGTTGGTGC
1 ATCGATGCATCAAATGCATTCGATGTTTCAAAATAACCACAGTGCATCGATGCATGGTAAATGC
* *
73736 ATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCAT-G-AAATG
1 ATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAACCACAGTGCATCGATGCATGGTAAATG
73798 C
64 C
73799 ATTCGATG
1 A-TCGATG
73807 TTCAATTTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
63 4 0.07
64 31 0.51
65 23 0.38
66 3 0.05
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (64 bp):
ATCGATGCATCAAATGCATTCGATGTTTCAAAATAACCACAGTGCATCGATGCATGGTAAATGC
Found at i:76697 original size:19 final size:19
Alignment explanation
Indices: 76673--76717 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
76663 AATAAATCTA
76673 TTGTAGGTACTAAATGGGT
1 TTGTAGGTACTAAATGGGT
76692 TTGTAGGTACTAAATGGGT
1 TTGTAGGTACTAAATGGGT
*
76711 TTTTAGG
1 TTGTAGG
76718 AAAAACCTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.31, T:0.40
Consensus pattern (19 bp):
TTGTAGGTACTAAATGGGT
Found at i:78118 original size:21 final size:22
Alignment explanation
Indices: 78094--78147 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
78084 CCCCTTGTTA
78094 TGTATCGATACA-CCTTGAATG
1 TGTATCGATACATCCTTGAATG
* *
78115 TGTACCAATACATTCCTTGAATG
1 TGTATCGATACA-TCCTTGAATG
*
78138 TGTATTGATA
1 TGTATCGATA
78148 TCCCCTAGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 10 0.38
23 16 0.62
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (22 bp):
TGTATCGATACATCCTTGAATG
Found at i:78578 original size:19 final size:20
Alignment explanation
Indices: 78540--78578 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
78530 ACAAAATTTC
*
78540 AAATTTTTTGTTAATTTAAAA
1 AAATGTTTTGTT-ATTTAAAA
78561 AAATGTTTTGTT-TTTAAA
1 AAATGTTTTGTTATTTAAA
78579 TTGTTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (20 bp):
AAATGTTTTGTTATTTAAAA
Found at i:87017 original size:30 final size:32
Alignment explanation
Indices: 86981--87045 Score: 116
Period size: 30 Copynumber: 2.1 Consensus size: 32
86971 AACATACCAG
86981 GTGAGTGCATTTATTATGTAC-T-TATGATAT
1 GTGAGTGCATTTATTATGTACTTATATGATAT
87011 GTGAGTGCATTTATTATGTACTTATATGATAT
1 GTGAGTGCATTTATTATGTACTTATATGATAT
87043 GTG
1 GTG
87046 GACGACTTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 21 0.64
31 1 0.03
32 11 0.33
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (32 bp):
GTGAGTGCATTTATTATGTACTTATATGATAT
Found at i:91084 original size:30 final size:29
Alignment explanation
Indices: 91009--91113 Score: 122
Period size: 30 Copynumber: 3.5 Consensus size: 29
90999 AAATGACATT
91009 AACAGAAACTTAAAGGAA-TAAAATAGCAAAA
1 AACAGAAACTTAAA-GAACTAAAATAGC--AA
91040 AACAAGAAACTTAAAGAACTAAAATAGCTAA
1 AAC-AGAAACTTAAAGAACTAAAATAGC-AA
* * *
91071 AACAGAAAGTTAAAGGACTAAAATATCAA
1 AACAGAAACTTAAAGAACTAAAATAGCAA
*
91100 AACAGAAAGTTAAA
1 AACAGAAACTTAAA
91114 AGGCTGAACT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
29 16 0.24
30 21 0.31
31 11 0.16
32 20 0.29
ACGTcount: A:0.62, C:0.10, G:0.12, T:0.15
Consensus pattern (29 bp):
AACAGAAACTTAAAGAACTAAAATAGCAA
Found at i:91116 original size:30 final size:30
Alignment explanation
Indices: 91009--91113 Score: 131
Period size: 32 Copynumber: 3.5 Consensus size: 30
90999 AAATGACATT
*
91009 AACAGAAACTTAAAGGAATAAAATAGCAAAA
1 AACAGAAACTTAAAGGACTAAAATAGC-AAA
* *
91040 AACAAGAAACTTAAAGAACTAAAATAGCTAA
1 AAC-AGAAACTTAAAGGACTAAAATAGCAAA
* *
91071 AACAGAAAGTTAAAGGACTAAAATATC-AA
1 AACAGAAACTTAAAGGACTAAAATAGCAAA
*
91100 AACAGAAAGTTAAA
1 AACAGAAACTTAAA
91114 AGGCTGAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
29 16 0.24
30 21 0.31
31 8 0.12
32 22 0.33
ACGTcount: A:0.62, C:0.10, G:0.12, T:0.15
Consensus pattern (30 bp):
AACAGAAACTTAAAGGACTAAAATAGCAAA
Found at i:94745 original size:6 final size:7
Alignment explanation
Indices: 94719--94750 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
94709 TAATAAAATC
94719 AAATA-A
1 AAATATA
94725 AAATATA
1 AAATATA
94732 AAATATA
1 AAATATA
94739 AAA-ATA
1 AAATATA
94745 AAATAT
1 AAATAT
94751 TATTATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.46
7 13 0.54
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAATATA
Found at i:94745 original size:13 final size:13
Alignment explanation
Indices: 94713--94750 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
94703 TTTAATTAAT
*
94713 AAAATCAAATA-A
1 AAAATAAAATATA
94725 AAATATAAAATATA
1 AAA-ATAAAATATA
94739 AAAATAAAATAT
1 AAAATAAAATAT
94751 TATTATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 3 0.13
13 16 0.70
14 4 0.17
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATAAAATATA
Found at i:95507 original size:2 final size:2
Alignment explanation
Indices: 95459--95487 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
95449 TTATCCCTTA
95459 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95488 CTAATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:100336 original size:15 final size:15
Alignment explanation
Indices: 100318--100362 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
100308 AAAGAGGAGC
100318 AAGAAGAAGAAAAGA
1 AAGAAGAAGAAAAGA
*
100333 AAGAAGAAGGAAAGA
1 AAGAAGAAGAAAAGA
100348 ATGAGAAGAAGAAAA
1 A--AGAAGAAGAAAA
100363 ATGATGTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 15 0.58
17 11 0.42
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (15 bp):
AAGAAGAAGAAAAGA
Found at i:103698 original size:170 final size:170
Alignment explanation
Indices: 103387--103706 Score: 471
Period size: 170 Copynumber: 1.9 Consensus size: 170
103377 AGGATCAAGA
* * *
103387 AAATAAAATGGAAGACCCACCGATACCCCCACCTCAAGAGGAGATTTCGATGAAGACCATGTATG
1 AAATAAAATGGAAGACCCACCAATACCCCAACCTCAAGAGGAGATTTCAATGAAGACCATGTATG
* * *
103452 ATTATATGGTTCAAAGCTTCGAGAACATAAATGCTTGTTTGGACACATCTGAATATAATGTGGAT
66 ATTATATGGTTCAAAGCTTCGAGAACATAAATGCTCGTTTGGACACATCTGAATATAATATGAAT
*
103517 CATCACTTGGATTCACTTGAGCATGACATTCATTCGAAGC
131 CATCACTTGGATGCACTTGAGCATGACATTCATTCGAAGC
* * *
103557 AAATGAAATGGAAGAGCCACCAATGCCCCAACCTCAAGAGGAGATTTCAATGAAGACCATGTATG
1 AAATAAAATGGAAGACCCACCAATACCCCAACCTCAAGAGGAGATTTCAATGAAGACCATGTATG
* * * * *
103622 ATTATATGGTTCAAAGCTTC-AGGAACATAATTGCTCGTTTGGACACATTTGAGTCTACTATGAA
66 ATTATATGGTTCAAAGCTTCGA-GAACATAAATGCTCGTTTGGACACATCTGAATATAATATGAA
* *
103686 TCGTCGCTTGGATGCACTTGA
130 TCATCACTTGGATGCACTTGA
103707 TGCCTCCCTC
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
169 1 0.01
170 131 0.99
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (170 bp):
AAATAAAATGGAAGACCCACCAATACCCCAACCTCAAGAGGAGATTTCAATGAAGACCATGTATG
ATTATATGGTTCAAAGCTTCGAGAACATAAATGCTCGTTTGGACACATCTGAATATAATATGAAT
CATCACTTGGATGCACTTGAGCATGACATTCATTCGAAGC
Found at i:104079 original size:16 final size:15
Alignment explanation
Indices: 104049--104091 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
104039 GTGTAAGTGT
*
104049 AAAATTTTCTAGCCA
1 AAAATTTTTTAGCCA
104064 AAAATTGTTTTAGCCA
1 AAAATT-TTTTAGCCA
104080 AAAATTATTTTA
1 AAAATT-TTTTA
104092 TTTAAGGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.40
Consensus pattern (15 bp):
AAAATTTTTTAGCCA
Found at i:106767 original size:28 final size:28
Alignment explanation
Indices: 106734--106798 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
106724 GTAGAGTCAT
*
106734 CTCATGACTGCTTTTATTCACTCATATG
1 CTCATGACTGCTTTCATTCACTCATATG
106762 CTCATGACTGCTTTCATTCACTCATATG
1 CTCATGACTGCTTTCATTCACTCATATG
*
106790 CACATGACT
1 CTCATGACT
106799 ACCATTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (28 bp):
CTCATGACTGCTTTCATTCACTCATATG
Found at i:108878 original size:18 final size:19
Alignment explanation
Indices: 108841--108878 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
108831 GAGAAAGGAC
108841 AATTAAAAAATGGAAATAA
1 AATTAAAAAATGGAAATAA
108860 AATTAAATAAA-GG-AATAA
1 AATTAAA-AAATGGAAATAA
108878 A
1 A
108879 GTTTAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 9 0.50
20 3 0.17
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AATTAAAAAATGGAAATAA
Found at i:109014 original size:13 final size:12
Alignment explanation
Indices: 108996--109053 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 12
108986 TATTATCCCC
108996 AGATAAAAACTAA
1 AGATAAAAA-TAA
109009 AGATAAAAATGAA
1 AGATAAAAAT-AA
*
109022 A-ATGAAAATTAA
1 AGAT-AAAAATAA
*
109034 AGATAAAGATAA
1 AGATAAAAATAA
*
109046 ATATAAAA
1 AGATAAAA
109054 GAGAAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 18 0.49
13 19 0.51
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (12 bp):
AGATAAAAATAA
Found at i:109046 original size:12 final size:13
Alignment explanation
Indices: 108996--109053 Score: 50
Period size: 12 Copynumber: 4.6 Consensus size: 13
108986 TATTATCCCC
108996 AGATAAAAACTAA
1 AGATAAAAACTAA
109009 AGATAAAAA-TGAA
1 AGATAAAAACT-AA
* *
109022 A-ATGAAAATTAA
1 AGATAAAAACTAA
*
109034 AGATAAAGA-TAA
1 AGATAAAAACTAA
*
109046 ATATAAAA
1 AGATAAAA
109054 GAGAAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 19 0.51
13 18 0.49
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (13 bp):
AGATAAAAACTAA
Found at i:118930 original size:43 final size:43
Alignment explanation
Indices: 118879--119032 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 43
118869 TAAATTACCT
** *
118879 ACCTATTGCGGCGTTTATAAGAGAAACATCGCTAATTATCTGA
1 ACCTATTGCGGCGTTTATAAGAGAAACGCCGCTAAATATCTGA
* *
118922 ACCTATTGCGGCGTTTATAAGA-AACACGCCGTTAAATATCTAA
1 ACCTATTGCGGCGTTTATAAGAGAA-ACGCCGCTAAATATCTGA
* * * * * *
118965 ACCTATTGCGGTGTGTGTAAGAAAAACGCCGCTAAATGTATGA
1 ACCTATTGCGGCGTTTATAAGAGAAACGCCGCTAAATATCTGA
* *
119008 ACCTATTGCGGCGATTGTAAGAGAA
1 ACCTATTGCGGCGTTTATAAGAGAA
119033 GTGTTGCTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 2 0.02
43 89 0.96
44 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (43 bp):
ACCTATTGCGGCGTTTATAAGAGAAACGCCGCTAAATATCTGA
Found at i:121309 original size:13 final size:13
Alignment explanation
Indices: 121291--121316 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121281 AAGTAATTGT
121291 AAAATATGAAAAA
1 AAAATATGAAAAA
121304 AAAATATGAAAAA
1 AAAATATGAAAAA
121317 TAAACTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAATATGAAAAA
Found at i:121537 original size:2 final size:2
Alignment explanation
Indices: 121363--121527 Score: 174
Period size: 2 Copynumber: 81.0 Consensus size: 2
121353 ATTTGAAACA
121363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
121405 AT AT AT AT AT AT AT AT AT AT AT AT AT AA ACT AT AC AGT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT
* * *
121449 TT AT AT AT AT AA AT AT AT CA- AT AT AT AT AT AT -T AT AT AT AA
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
* * *
121490 ACT AT AT AGT TT AT -T AT AGT TT AT AT AT AA AT AT AT AT
1 A-T AT AT A-T AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
121528 CAACTATATA
Statistics
Matches: 136, Mismatches: 18, Indels: 18
0.79 0.10 0.10
Matches are distributed among these distances:
1 3 0.02
2 128 0.94
3 5 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121571 original size:17 final size:17
Alignment explanation
Indices: 121551--121606 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
121541 CTATACATTT
* * *
121551 TATATTTATATATTATG
1 TATAATTATAAATTATA
121568 TATAATTATAAATTATA
1 TATAATTATAAATTATA
121585 TATACTATGTATAAATTATA
1 TATA--AT-TATAAATTATA
121605 TA
1 TA
121607 ATTTATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 18 0.55
19 2 0.06
20 13 0.39
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.50
Consensus pattern (17 bp):
TATAATTATAAATTATA
Found at i:121586 original size:26 final size:28
Alignment explanation
Indices: 121557--121609 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
121547 ATTTTATATT
*
121557 TATATATTATGTAT-AATTATA-AATTA
1 TATATACTATGTATAAATTATATAATTA
121583 TATATACTATGTATAAATTATATAATT
1 TATATACTATGTATAAATTATATAATT
121610 TATTAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 13 0.54
27 7 0.29
28 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (28 bp):
TATATACTATGTATAAATTATATAATTA
Found at i:121652 original size:20 final size:19
Alignment explanation
Indices: 121574--121702 Score: 76
Period size: 20 Copynumber: 7.0 Consensus size: 19
121564 TATGTATAAT
* *
121574 TATAAATTATATATACTATG
1 TATAAACTATATA-ACTATA
*
121594 TATAAATTATATAA-T-T-
1 TATAAACTATATAACTATA
*
121610 TATTAA-TATA-AACTATA
1 TATAAACTATATAACTATA
**
121627 GGTAAACTATATGAACTATA
1 TATAAACTATAT-AACTATA
**
121647 TATAAAAAATTATATA-TATA
1 TATAAACTA-TATA-ACTATA
**
121667 TATAAACTATA-ATTTATA
1 TATAAACTATATAACTATA
121685 TATAAACTATAT-ACTATA
1 TATAAACTATATAACTATA
121703 GTTGATATTT
Statistics
Matches: 86, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
14 2 0.02
15 5 0.06
16 6 0.07
17 4 0.05
18 25 0.29
19 3 0.03
20 37 0.43
21 4 0.05
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.41
Consensus pattern (19 bp):
TATAAACTATATAACTATA
Found at i:121702 original size:18 final size:18
Alignment explanation
Indices: 121583--121829 Score: 73
Period size: 18 Copynumber: 13.1 Consensus size: 18
121573 TTATAAATTA
* *
121583 TATATACTATGTATAAAT
1 TATATACTATATATAAAC
* *
121601 TATATA--ATTTATTAA-
1 TATATACTATATATAAAC
* **
121616 TATAAACTATAGGTAAAC
1 TATATACTATATATAAAC
*
121634 TATATGAACTATATATAAAAAAT
1 TATAT--ACTATATAT---AAAC
121657 TATATA-TATATATAAAC
1 TATATACTATATATAAAC
*
121674 TATA-ATTTATATATAAAC
1 TATATA-CTATATATAAAC
**
121692 TATATACTATAGT-TGATATT
1 TATATACTATA-TAT-A-AAC
*
121712 TATATACTATATAATATA-
1 TATATACTATAT-ATAAAC
* * *
121730 TAGTTTACATTATTACATGAAC
1 TA-TATAC--TA-TATATAAAC
121752 TATTATA-TATATATAAACAC
1 TA-TATACTATATAT-AA-AC
**
121772 TATATACTATATAGTTTAC
1 TATATACTATATA-TAAAC
121791 -ATATCAACTATATATAAAC
1 TATAT--ACTATATATAAAC
*
121810 TATAGT-TTATATATAAAC
1 TATA-TACTATATATAAAC
121828 TA
1 TA
121830 ACACTATAGT
Statistics
Matches: 170, Mismatches: 30, Indels: 58
0.66 0.12 0.22
Matches are distributed among these distances:
15 5 0.03
16 8 0.05
17 12 0.07
18 53 0.31
19 20 0.12
20 48 0.28
21 9 0.05
22 7 0.04
23 8 0.05
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.42
Consensus pattern (18 bp):
TATATACTATATATAAAC
Found at i:122079 original size:27 final size:29
Alignment explanation
Indices: 122017--122085 Score: 88
Period size: 27 Copynumber: 2.4 Consensus size: 29
122007 ATAAACTATT
*
122017 TATATAGTATATACGTTTATATTTATATAC
1 TATATA-TATATACGTTTATATTTATATAA
*
122047 TATATA-ATATA-GTTTATATTTATGTAA
1 TATATATATATACGTTTATATTTATATAA
*
122074 TTTATATATATA
1 TATATATATATA
122086 ATTCAAAGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 19 0.54
28 10 0.29
30 6 0.17
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (29 bp):
TATATATATATACGTTTATATTTATATAA
Found at i:123351 original size:18 final size:18
Alignment explanation
Indices: 123330--123365 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
123320 TAATATGCCA
*
123330 ACTATATACTATATACAT
1 ACTATATACTATACACAT
*
123348 ACTATATATTATACACAT
1 ACTATATACTATACACAT
123366 GCCCACATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (18 bp):
ACTATATACTATACACAT
Found at i:123887 original size:20 final size:20
Alignment explanation
Indices: 123864--123922 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 20
123854 ATAAGAGTCC
123864 TAATATAATCATAATTAATA
1 TAATATAATCATAATTAATA
* *
123884 T-A-ATAATCTATTTATTAATT
1 TAATATAATC-A-TAATTAATA
123904 TAAT-T-ATCATAATTAATA
1 TAATATAATCATAATTAATA
123922 T
1 T
123923 TTATTATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
18 14 0.45
19 3 0.10
20 12 0.39
21 2 0.06
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATATAATCATAATTAATA
Found at i:123924 original size:20 final size:20
Alignment explanation
Indices: 123871--123929 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
123861 TCCTAATATA
*
123871 ATCATAATTAATA--TAATA
1 ATCATAATTAATATTTAATT
* *
123889 ATC-TATTTATTAATTTAATT
1 ATCATAATTAAT-ATTTAATT
123909 ATCATAATTAATATTT-ATT
1 ATCATAATTAATATTTAATT
123928 AT
1 AT
123930 GACATTTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 6 0.19
18 4 0.12
19 5 0.16
20 11 0.34
21 6 0.19
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
ATCATAATTAATATTTAATT
Found at i:124048 original size:16 final size:16
Alignment explanation
Indices: 124023--124060 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
124013 CAATGATAAT
124023 ATAT-AAGTCAGGTAA
1 ATATCAAGTCAGGTAA
* *
124038 ATGTCAAGTCATGTAA
1 ATATCAAGTCAGGTAA
124054 ATATCAA
1 ATATCAA
124061 ATCAAGTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (16 bp):
ATATCAAGTCAGGTAA
Found at i:127900 original size:24 final size:25
Alignment explanation
Indices: 127853--127902 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
127843 GGACTCGTAT
127853 TGAGTTTTGAGATTAATTGAGTGCA
1 TGAGTTTTGAGATTAATTGAGTGCA
127878 TGAGTTTTGAGATT-ATTGAGTGCA
1 TGAGTTTTGAGATTAATTGAGTGCA
127902 T
1 T
127903 ACATATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.26, C:0.04, G:0.28, T:0.42
Consensus pattern (25 bp):
TGAGTTTTGAGATTAATTGAGTGCA
Found at i:128965 original size:25 final size:25
Alignment explanation
Indices: 128937--128987 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
128927 GGACTCATAT
*
128937 TGAGTTTTGAGATTAATTGAGTGCA
1 TGAGTTTTGAGATTAATTCAGTGCA
128962 TGAGTTTTGAGATTAATTCAGTGCA
1 TGAGTTTTGAGATTAATTCAGTGCA
128987 T
1 T
128988 ACATGTGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.06, G:0.25, T:0.41
Consensus pattern (25 bp):
TGAGTTTTGAGATTAATTCAGTGCA
Found at i:130650 original size:53 final size:53
Alignment explanation
Indices: 130587--130696 Score: 166
Period size: 53 Copynumber: 2.1 Consensus size: 53
130577 AATAGAATCA
* * *
130587 ATACTGATGAGGCGGTACCGATACTGTCAAAATAGAATGCTAAAATGATATCG
1 ATACTGATGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGATACCG
* * *
130640 ATACTTATGAGGCAGTACTGATACTGTCAAAACAGAATGCTAAAATGGTACCG
1 ATACTGATGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGATACCG
130693 ATAC
1 ATAC
130697 CATATATGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (53 bp):
ATACTGATGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGATACCG
Found at i:138158 original size:20 final size:20
Alignment explanation
Indices: 138133--138178 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
138123 TTGCATACAA
138133 TATCGGTACTGCCTTAACAG
1 TATCGGTACTGCCTTAACAG
*
138153 TATCGGTACTGCCTTATCAG
1 TATCGGTACTGCCTTAACAG
138173 TATCGG
1 TATCGG
138179 CACTACTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (20 bp):
TATCGGTACTGCCTTAACAG
Found at i:138334 original size:11 final size:11
Alignment explanation
Indices: 138318--138350 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
138308 ACCCTTAGTA
138318 AAAATTATTTC
1 AAAATTATTTC
138329 AAAATTATTTC
1 AAAATTATTTC
138340 AAAATTATTTC
1 AAAATTATTTC
138351 CAGTATAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (11 bp):
AAAATTATTTC
Found at i:141692 original size:21 final size:21
Alignment explanation
Indices: 141663--141702 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
141653 ATTTTACACT
*
141663 GAGTGTACCGATACACCTAGA
1 GAGTATACCGATACACCTAGA
141684 GAGTATACCGATACACCTA
1 GAGTATACCGATACACCTA
141703 TGCTCCCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (21 bp):
GAGTATACCGATACACCTAGA
Found at i:147024 original size:21 final size:20
Alignment explanation
Indices: 147000--147076 Score: 66
Period size: 23 Copynumber: 3.6 Consensus size: 20
146990 ATCCTTGCTA
147000 TGTATCGATACACTATAAATG
1 TGTATCGATACACT-TAAATG
* *
147021 TGTACCGATACATTCCTTGAATG
1 TGTATCGATACA---CTTAAATG
*
147044 TGTATCGATACACTCACAA-G
1 TGTATCGATACACTTA-AATG
*
147064 TGTACCGATACAC
1 TGTATCGATACAC
147077 CCATCGGGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
20 15 0.33
21 13 0.28
23 16 0.35
24 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (20 bp):
TGTATCGATACACTTAAATG
Found at i:147067 original size:43 final size:42
Alignment explanation
Indices: 146979--147075 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 42
146969 TCAATACCTA
* *
146979 TGTATCGATACATCCTTGCTATGTATCGATACACTATAAATG
1 TGTACCGATACATCCTTGATATGTATCGATACACTATAAATG
* *
147021 TGTACCGATACATTCCTTGAATGTGTATCGATACACTCA-CAA-G
1 TGTACCGATACA-TCCTTG-ATATGTATCGATACACT-ATAAATG
147064 TGTACCGATACA
1 TGTACCGATACA
147076 CCCATCGGGT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 11 0.23
43 19 0.40
44 17 0.35
45 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (42 bp):
TGTACCGATACATCCTTGATATGTATCGATACACTATAAATG
Found at i:149770 original size:21 final size:21
Alignment explanation
Indices: 149746--149785 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
149736 ATTTTACACT
149746 GAGTGTATTGATACACCTAGA
1 GAGTGTATTGATACACCTAGA
149767 GAGTGTATTGATACACCTA
1 GAGTGTATTGATACACCTA
149786 TGCTCCCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (21 bp):
GAGTGTATTGATACACCTAGA
Found at i:158675 original size:20 final size:21
Alignment explanation
Indices: 158650--158710 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 21
158640 TTTTGGTGCA
*
158650 GAGGGAATCGA-TCCCCCCCT
1 GAGGGAACCGATTCCCCCCCT
**
158670 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCCT
158691 GAAGGGGAACCGATTCCCCC
1 G-A-GGGAACCGATTCCCCC
158711 ACAGGGGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.29
21 8 0.23
22 1 0.03
23 16 0.46
ACGTcount: A:0.21, C:0.36, G:0.26, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCCT
Found at i:158718 original size:20 final size:20
Alignment explanation
Indices: 158693--158730 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
158683 CCCCCTTTGA
*
158693 AGGGGAACCGATTCCCCCAC
1 AGGGGAACCGATACCCCCAC
*
158713 AGGGGAATCGATACCCCC
1 AGGGGAACCGATACCCCC
158731 CTGGGGTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGGGAACCGATACCCCCAC
Found at i:163890 original size:15 final size:15
Alignment explanation
Indices: 163868--163908 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
163858 TTTCCATTTC
163868 CTTT-TTTTCTTTAT
1 CTTTCTTTTCTTTAT
*
163882 CTTTCTTTTGTTTAT
1 CTTTCTTTTCTTTAT
163897 CTTTCTTTTCTT
1 CTTTCTTTTCTT
163909 GATTTTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (15 bp):
CTTTCTTTTCTTTAT
Found at i:164508 original size:31 final size:35
Alignment explanation
Indices: 164445--164511 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
164435 TTTTTCACCC
164445 GACCCGACCCGACCCGATAGATAATTTAAAAAATCT
1 GACCCGACCCGACCCGATAGATAA-TTAAAAAATCT
* *
164481 GACCCGACCCGACTCGA-A-ATAATAAAAAAAT
1 GACCCGACCCGACCCGATAGATAATTAAAAAAT
164512 TATTTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 8 0.28
34 4 0.14
35 1 0.03
36 16 0.55
ACGTcount: A:0.43, C:0.27, G:0.13, T:0.16
Consensus pattern (35 bp):
GACCCGACCCGACCCGATAGATAATTAAAAAATCT
Found at i:165844 original size:23 final size:21
Alignment explanation
Indices: 165818--165860 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
165808 CGGATTCAAA
165818 ACCAAAAAGGTAGTATCGGTACC
1 ACCAAAAA-G-AGTATCGGTACC
**
165841 ACCACTAAGAGTATCGGTAC
1 ACCAAAAAGAGTATCGGTAC
165861 TACTATACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 1 0.06
23 6 0.33
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (21 bp):
ACCAAAAAGAGTATCGGTACC
Found at i:168093 original size:21 final size:20
Alignment explanation
Indices: 168056--168095 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
168046 TAAATAAATG
**
168056 AAAATTATTATTTTATATAA
1 AAAATTATTATAATATATAA
168076 AAAATTATTTATAATATATA
1 AAAATTA-TTATAATATATA
168096 TTCGTGTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAATTATTATAATATATAA
Found at i:173620 original size:2 final size:2
Alignment explanation
Indices: 173613--173641 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
173603 ATCACTAGTT
173613 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
173642 GATGTTTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:174487 original size:24 final size:24
Alignment explanation
Indices: 174460--174514 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
174450 TCAAACGCAC
*
174460 CCTTAGTGCA-TATGGTGGGTACAA
1 CCTTA-TGCATTATGGTGGGCACAA
*
174484 CCTTATGTATTATGGTGGGCACAA
1 CCTTATGCATTATGGTGGGCACAA
*
174508 CTTTATG
1 CCTTATG
174515 TATATTAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (24 bp):
CCTTATGCATTATGGTGGGCACAA
Found at i:174515 original size:24 final size:24
Alignment explanation
Indices: 174470--174517 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
174460 CCTTAGTGCA
*
174470 TATGGTGGGTACAACCTTATGTAT
1 TATGGTGGGCACAACCTTATGTAT
*
174494 TATGGTGGGCACAACTTTATGTAT
1 TATGGTGGGCACAACCTTATGTAT
174518 ATTAGCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (24 bp):
TATGGTGGGCACAACCTTATGTAT
Found at i:187608 original size:3 final size:3
Alignment explanation
Indices: 187602--187630 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
187592 ATTATAATAA
187602 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
187631 TAATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:187635 original size:3 final size:3
Alignment explanation
Indices: 187629--187711 Score: 157
Period size: 3 Copynumber: 27.7 Consensus size: 3
187619 CAACAACAAC
*
187629 AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
187677 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
187712 ACCCCAGTAA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:188704 original size:102 final size:102
Alignment explanation
Indices: 188547--188776 Score: 284
Period size: 102 Copynumber: 2.2 Consensus size: 102
188537 AAGAGAAGCT
* * *
188547 ATCTCAAGTGAGATAAGATTTTGTTTCAAGGAAAATAATTTCAAAATGTACGTTTCAATGGAAAA
1 ATCTCAAGTGAGATCA-ATTTTGTTTCAAGGAAAATAAATTCAAAATGTACGTTTCAAGGGAAAA
* * *
188612 ATTTCTCAAGCGAGACGAAATTGGTTT-TTAGGAAAATA
65 ATGTCTCAAGCGAGACAAAATTGGTTTATT-GGAAAACA
* * * ** *
188650 ATCTAAAGTGAGATCAATTTTGTTTCAAGTG-CAATAAATTCAAAATTTGTGTTTCGAGGGAAAA
1 ATCTCAAGTGAGATCAATTTTGTTTCAAG-GAAAATAAATTCAAAATGTACGTTTCAAGGGAAAA
* *
188714 CTGTCTCAAGCGAGACAAAATTTGTTTATTGGAAAACA
65 ATGTCTCAAGCGAGACAAAATTGGTTTATTGGAAAACA
*
188752 ATCTCAAGTGAGATCAATTTCGTTT
1 ATCTCAAGTGAGATCAATTTTGTTT
188777 AAAAAAATGT
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
102 92 0.84
103 17 0.16
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.33
Consensus pattern (102 bp):
ATCTCAAGTGAGATCAATTTTGTTTCAAGGAAAATAAATTCAAAATGTACGTTTCAAGGGAAAAA
TGTCTCAAGCGAGACAAAATTGGTTTATTGGAAAACA
Found at i:194075 original size:15 final size:15
Alignment explanation
Indices: 194055--194084 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
194045 TCTTTTAAAG
194055 AATTTTAAGAAAAAT
1 AATTTTAAGAAAAAT
*
194070 AATTTTAAGACAAAT
1 AATTTTAAGAAAAAT
194085 CTGGTATGCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (15 bp):
AATTTTAAGAAAAAT
Found at i:196444 original size:3 final size:3
Alignment explanation
Indices: 196433--196485 Score: 58
Period size: 3 Copynumber: 18.0 Consensus size: 3
196423 GTTGTAATCT
*
196433 ATA AAA ATA ATA ATA AT- ATA ATA ATA ATA ATA ATAA ATA A-A A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
196476 ATAA ATA ATA
1 AT-A ATA ATA
196486 TAAACAAACC
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 6 0.14
3 32 0.73
4 6 0.14
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:196455 original size:11 final size:12
Alignment explanation
Indices: 196439--196488 Score: 61
Period size: 11 Copynumber: 4.3 Consensus size: 12
196429 ATCTATAAAA
196439 ATAAT-AATAAT
1 ATAATAAATAAT
196450 ATAAT-AATAAT
1 ATAATAAATAAT
196461 AATAATAAATAA-
1 -ATAATAAATAAT
*
196473 AAAATAAATAAT
1 ATAATAAATAAT
196485 ATAA
1 ATAA
196489 ACAAACCCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
11 21 0.62
12 8 0.24
13 5 0.15
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:196457 original size:14 final size:14
Alignment explanation
Indices: 196438--196485 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
196428 AATCTATAAA
196438 AATAATAATAATAT
1 AATAATAATAATAT
196452 AATAATAATAATAAT
1 AATAATAATAAT-AT
196467 AAATAA-AA-AATA-
1 -AATAATAATAATAT
196479 AATAATA
1 AATAATA
196486 TAAACAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 5 0.16
12 1 0.03
13 1 0.03
14 15 0.48
15 4 0.13
16 5 0.16
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AATAATAATAATAT
Found at i:196458 original size:17 final size:17
Alignment explanation
Indices: 196432--196485 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
196422 TGTTGTAATC
*
196432 TATAAAAATAATAATAA
1 TATAATAATAATAATAA
196449 TATAATAATAATAATAA
1 TATAATAATAATAATAA
196466 TA-AATAA-AA-AATAA
1 TATAATAATAATAATAA
196480 -ATAATA
1 TATAATA
196486 TAAACAAACC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
13 1 0.03
14 9 0.26
15 2 0.06
16 5 0.14
17 18 0.51
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TATAATAATAATAATAA
Found at i:196489 original size:20 final size:21
Alignment explanation
Indices: 196437--196489 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
196427 TAATCTATAA
*
196437 AAATAATA-ATAATATAATAAT
1 AAATAATATA-AATATAAAAAT
196458 -AATAATAATAAATA-AAAAAT
1 AAATAAT-ATAAATATAAAAAT
196478 AAATAATATAAA
1 AAATAATATAAA
196490 CAAACCCTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 16 0.57
21 11 0.39
22 1 0.04
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATAATATAAATATAAAAAT
Found at i:199821 original size:55 final size:55
Alignment explanation
Indices: 199748--199858 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
199738 CTCCTGAGGT
199748 AAAACCCTATAAAGATTTTGTAATACCAAGTTCAACATTGGAGGTGAGGATCTCC
1 AAAACCCTATAAAGATTTTGTAATACCAAGTTCAACATTGGAGGTGAGGATCTCC
*
199803 AAAACCCTATAAAGATTTTGTAATACCAAGTTCAACCTTGGAGGTGAGGATCTCC
1 AAAACCCTATAAAGATTTTGTAATACCAAGTTCAACATTGGAGGTGAGGATCTCC
199858 A
1 A
199859 CGAGAGTGTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (55 bp):
AAAACCCTATAAAGATTTTGTAATACCAAGTTCAACATTGGAGGTGAGGATCTCC
Found at i:201968 original size:20 final size:20
Alignment explanation
Indices: 201945--202032 Score: 54
Period size: 20 Copynumber: 4.2 Consensus size: 20
201935 ATACTGCCCC
201945 TATAGTATTGATACTCAAGG
1 TATAGTATTGATACTCAAGG
*
201965 TATAGAGTATGGATACTGCTAAGG
1 TAT--AGTATTGATACT-C-AAGG
* ** ***
201989 -AAAGTACCGATACT-ACCCC
1 TATAGTATTGATACTCA-AGG
202008 TATAGTATTGATACTCAAGG
1 TATAGTATTGATACTCAAGG
202028 TATAG
1 TATAG
202033 AGTATCGATT
Statistics
Matches: 48, Mismatches: 13, Indels: 14
0.64 0.17 0.19
Matches are distributed among these distances:
18 1 0.02
20 19 0.40
21 11 0.23
22 11 0.23
23 2 0.04
24 4 0.08
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
TATAGTATTGATACTCAAGG
Found at i:202008 original size:63 final size:63
Alignment explanation
Indices: 201905--202041 Score: 247
Period size: 63 Copynumber: 2.2 Consensus size: 63
201895 TTTCTAACTG
* *
201905 AGAGTATCGATACTGCTAAGGAAATTACCGATACTGCCCCTATAGTATTGATACTCAAGGTAT
1 AGAGTATCGATACTGCTAAGGAAAGTACCGATACTACCCCTATAGTATTGATACTCAAGGTAT
*
201968 AGAGTATGGATACTGCTAAGGAAAGTACCGATACTACCCCTATAGTATTGATACTCAAGGTAT
1 AGAGTATCGATACTGCTAAGGAAAGTACCGATACTACCCCTATAGTATTGATACTCAAGGTAT
202031 AGAGTATCGAT
1 AGAGTATCGAT
202042 TCTGAGCCAT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 70 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (63 bp):
AGAGTATCGATACTGCTAAGGAAAGTACCGATACTACCCCTATAGTATTGATACTCAAGGTAT
Found at i:203546 original size:45 final size:45
Alignment explanation
Indices: 203448--203716 Score: 364
Period size: 45 Copynumber: 6.0 Consensus size: 45
203438 TCATTAATAA
* * * **
203448 CATCCATTCATGCTTATAATGC-GCCATTATGCATTTTCAATTATAT
1 CATCCTTTCATGCTAATAATGCACCCA-TATGCA-TTTCAATTATGG
*
203494 CATCCTTTCATGCTGATAATGCACCCATATGCATTTCAATTATGG
1 CATCCTTTCATGCTAATAATGCACCCATATGCATTTCAATTATGG
*
203539 TATCCTTTCATGCCT-ATAATGCACCCATATGCATTTCAATTATGG
1 CATCCTTTCATG-CTAATAATGCACCCATATGCATTTCAATTATGG
* *
203584 CATCCTTTCATGCAAATAATGCACCCATATGCATTTTAATTATGG
1 CATCCTTTCATGCTAATAATGCACCCATATGCATTTCAATTATGG
* * * *
203629 CATCCTTTTATGCCAATAATGCAACCATATGCATTTTAATTATGG
1 CATCCTTTCATGCTAATAATGCACCCATATGCATTTCAATTATGG
203674 CATCCTTTCATG-TCAATAATGCACCCATATGCATTTCAATTAT
1 CATCCTTTCATGCT-AATAATGCACCCATATGCATTTCAATTAT
203717 TCATTCGTTT
Statistics
Matches: 203, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.00
45 171 0.84
46 28 0.14
47 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (45 bp):
CATCCTTTCATGCTAATAATGCACCCATATGCATTTCAATTATGG
Found at i:204840 original size:3 final size:3
Alignment explanation
Indices: 204832--204878 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
204822 TTACCCACGT
* *
204832 GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA GAA AAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
204879 GTAGAAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:205239 original size:32 final size:32
Alignment explanation
Indices: 205191--205277 Score: 111
Period size: 32 Copynumber: 2.7 Consensus size: 32
205181 ACCAAATAAT
*
205191 AGTCAGTGTAGAATTTAGATAATGCACAACAG
1 AGTCAGTGTAGCATTTAGATAATGCACAACAG
* *
205223 AGTCAGTGTTGCATTTAGATAATGCACAAGAG
1 AGTCAGTGTAGCATTTAGATAATGCACAACAG
* * * *
205255 TGTCAGTATCGCATTTATATAAT
1 AGTCAGTGTAGCATTTAGATAAT
205278 ACGTAACAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (32 bp):
AGTCAGTGTAGCATTTAGATAATGCACAACAG
Found at i:206378 original size:21 final size:20
Alignment explanation
Indices: 206352--206395 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
206342 GATTTCTGGG
* *
206352 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCC-TT
206373 CAAGGGGAACCGATACCCTT
1 CAAGGGGAACCGATACCCTT
206393 CAA
1 CAA
206396 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.32, C:0.27, G:0.25, T:0.16
Consensus pattern (20 bp):
CAAGGGGAACCGATACCCTT
Found at i:206800 original size:17 final size:18
Alignment explanation
Indices: 206752--206800 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
206742 TGATTATACG
*
206752 TATATGAATGACATGAAT
1 TATATGTATGACATGAAT
*
206770 TGTATGTATG-CATGAA-
1 TATATGTATGACATGAAT
*
206786 TATATGTGTGACATG
1 TATATGTATGACATG
206801 CTTTTGAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 8 0.31
17 10 0.38
18 8 0.31
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (18 bp):
TATATGTATGACATGAAT
Found at i:208137 original size:23 final size:22
Alignment explanation
Indices: 208078--208144 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
208068 TATGGACATC
*
208078 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
208100 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
208122 ATTCTACGGGGCACTTCGGTGCA
1 ATTCTAC-GGGCACTTCGGTGCA
208145 TTTATACGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 28 0.65
23 15 0.35
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (22 bp):
ATTCTACGGGCACTTCGGTGCA
Found at i:209326 original size:20 final size:20
Alignment explanation
Indices: 209303--209379 Score: 52
Period size: 20 Copynumber: 3.8 Consensus size: 20
209293 CACGTGTTAC
209303 TAAAATTAAATTGATTTTTA
1 TAAAATTAAATTGATTTTTA
*
209323 T-AAA-CAAATT-ATTTTTTTA
1 TAAAATTAAATTGA--TTTTTA
*
209342 TAAAAAAATTAAATTGATTTCTA
1 T---AAAATTAAATTGATTTTTA
* *
209365 AAAAAATAAATTGAT
1 TAAAATTAAATTGAT
209380 AGGTGTTAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 16
0.68 0.08 0.25
Matches are distributed among these distances:
17 1 0.02
18 5 0.11
19 10 0.23
20 14 0.32
23 8 0.18
24 5 0.11
25 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.43
Consensus pattern (20 bp):
TAAAATTAAATTGATTTTTA
Found at i:211492 original size:19 final size:18
Alignment explanation
Indices: 211454--211493 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
211444 TTTCATTTGA
* *
211454 TTTTCTTATTTACTTTAT
1 TTTTCTTATTCACCTTAT
211472 TTTTCTTATTCATCCTTAT
1 TTTTCTTATTCA-CCTTAT
211491 TTT
1 TTT
211494 CCCTCTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTCTTATTCACCTTAT
Found at i:221917 original size:54 final size:55
Alignment explanation
Indices: 221846--221964 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 55
221836 TTCACTAAAT
** * * *
221846 TGCCG-AAATGGAAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAG
1 TGCCGAAAATGGTTATTCACAAACACATTATGAATACAATGGATTGCACACATAG
* * **
221900 TGCC-AAAATGGTTATTCATAAACACATTATGAATACAATGGGTTGCACATTTAG
1 TGCCGAAAATGGTTATTCACAAACACATTATGAATACAATGGATTGCACACATAG
221954 TGCCGAAAATG
1 TGCCGAAAATG
221965 TACCGTTATG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
54 48 0.89
55 6 0.11
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (55 bp):
TGCCGAAAATGGTTATTCACAAACACATTATGAATACAATGGATTGCACACATAG
Found at i:226140 original size:32 final size:32
Alignment explanation
Indices: 226103--226279 Score: 203
Period size: 32 Copynumber: 5.5 Consensus size: 32
226093 GATTGTATGT
* *
226103 TGCATAGTAGTGTCAGTGTTGCATTCAAATAA
1 TGCACAGTAGAGTCAGTGTTGCATTCAAATAA
* * *
226135 TGCATAATAGAGTTAGTGTTGCATTCAAATAA
1 TGCACAGTAGAGTCAGTGTTGCATTCAAATAA
* *
226167 TGTACAGTAGGGTCAGTGTTGCATTCAAATAA
1 TGCACAGTAGAGTCAGTGTTGCATTCAAATAA
* *
226199 TGCACAATAGAGTCAGTGTTACATTCAAATAA
1 TGCACAGTAGAGTCAGTGTTGCATTCAAATAA
* * *
226231 TGTACATTAG-GATCAGTGTTGCATTCAGATAA
1 TGCACAGTAGAG-TCAGTGTTGCATTCAAATAA
* * *
226263 TACACAGGAGTGTCAGT
1 TGCACAGTAGAGTCAGT
226280 ATTGTAGTAA
Statistics
Matches: 123, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
31 1 0.01
32 121 0.98
33 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (32 bp):
TGCACAGTAGAGTCAGTGTTGCATTCAAATAA
Found at i:226187 original size:64 final size:64
Alignment explanation
Indices: 226108--226268 Score: 250
Period size: 64 Copynumber: 2.5 Consensus size: 64
226098 TATGTTGCAT
* * * *
226108 AGTAGTGTCAGTGTTGCATTCAAATAATGCATAATAGAGTTAGTGTTGCATTCAAATAATGTAC
1 AGTAGGGTCAGTGTTGCATTCAAATAATGCACAATAGAGTCAGTGTTACATTCAAATAATGTAC
226172 AGTAGGGTCAGTGTTGCATTCAAATAATGCACAATAGAGTCAGTGTTACATTCAAATAATGTAC
1 AGTAGGGTCAGTGTTGCATTCAAATAATGCACAATAGAGTCAGTGTTACATTCAAATAATGTAC
* * * *
226236 ATTAGGATCAGTGTTGCATTCAGATAATACACA
1 AGTAGGGTCAGTGTTGCATTCAAATAATGCACA
226269 GGAGTGTCAG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 89 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (64 bp):
AGTAGGGTCAGTGTTGCATTCAAATAATGCACAATAGAGTCAGTGTTACATTCAAATAATGTAC
Found at i:227503 original size:189 final size:189
Alignment explanation
Indices: 227183--227555 Score: 665
Period size: 189 Copynumber: 2.0 Consensus size: 189
227173 AACCCTATCT
* *
227183 TTAGGGGAGAGGTGTGTTTTGATGAAATTAAGTTAGGGTTTTGATTGTAGAGATTTTATAAAGTT
1 TTAGGGGAGAGATGTGTTTTGATGAAATTAAGTTAGGATTTTGATTGTAGAGATTTTATAAAGTT
* **
227248 GAATCGAAGTTGATTTAATGCTTGAATTGAATCAAAATCGAGTAAAATCATGAAAACTCTAATCT
66 AAATCGAAGTTGATTTAATGCTTGAATCAAATCAAAATCGAGTAAAATCATGAAAACTCTAATCT
227313 TGAACATATAAAGAATTCGACCTTGACTATAGAGGATGATAAAATTATGGAAAATTAAG
131 TGAACATATAAAGAATTCGACCTTGACTATAGAGGATGATAAAATTATGGAAAATTAAG
**
227372 TTAGGGGAGAGATGTGTTTTGATGAAATTAAGTTAGGATTTTGATTGTAGAGATTTTATATGGTT
1 TTAGGGGAGAGATGTGTTTTGATGAAATTAAGTTAGGATTTTGATTGTAGAGATTTTATAAAGTT
*
227437 AAATCGAAGTTGGTTTAATGCTTGAATCAAATCAAAATCGAGTAAAATCATGAAAACTCTAATCT
66 AAATCGAAGTTGATTTAATGCTTGAATCAAATCAAAATCGAGTAAAATCATGAAAACTCTAATCT
*
227502 TGAACTTATAAAGAATTCGACCTTGACTATAGAGGATGATAAAATTATGGAAAA
131 TGAACATATAAAGAATTCGACCTTGACTATAGAGGATGATAAAATTATGGAAAA
227556 AATATGTAGG
Statistics
Matches: 175, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
189 175 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (189 bp):
TTAGGGGAGAGATGTGTTTTGATGAAATTAAGTTAGGATTTTGATTGTAGAGATTTTATAAAGTT
AAATCGAAGTTGATTTAATGCTTGAATCAAATCAAAATCGAGTAAAATCATGAAAACTCTAATCT
TGAACATATAAAGAATTCGACCTTGACTATAGAGGATGATAAAATTATGGAAAATTAAG
Found at i:230956 original size:68 final size:68
Alignment explanation
Indices: 230864--231469 Score: 917
Period size: 68 Copynumber: 8.9 Consensus size: 68
230854 ATGGCGTAGG
* * * * *
230864 TGTGCATTTAAAAGAAAAGTGTCAATTATGACAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCTT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
*
230929 AGA
66 AGT
* * *
230932 TGTGTATTTGTCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCTTTTGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
*
230997 AGA
66 AGT
* *
231000 TGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGGGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
231065 AGT
66 AGT
* * *
231068 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTACGTGTCTTTGAGGACT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
231133 AGT
66 AGT
* * * * *
231136 TGTGCTTTTGACA-AGAAGGTGTCAATTATGCCATTTAGATAAAATGCTAAGTGCCTTTAAGGCC
1 TGTGCATTTGACAGA-AAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCC
*
231200 TAGC
65 TAGT
* *
231204 TGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTATGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
*
231269 AGC
66 AGT
* *
231272 TGTGCATTTGACAGAAAGATGTCAATTATGCCAGTTAAATGAAAGGCTAAGTGCCTTTGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
231337 AGT
66 AGT
* **
231340 TGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGATTTTGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
*
231405 AGG
66 AGT
231408 TGTGCATTTGACAGAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAG
1 TGTGCATTTGACAG-AAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAG
231470 TAAAAGACTA
Statistics
Matches: 486, Mismatches: 49, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
67 1 0.00
68 439 0.90
69 46 0.09
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (68 bp):
TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
AGT
Done.