genome.fa.s8805.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008805.1 Hibiscus syriacus cultivar Beakdansim tig00111958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49055

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4288--4331	19	2.2	20	96	4	81	27	36	13	22	1.92
4352--4403	19	2.7	20	78	3	61	26	28	15	28	1.96
6454--6498	19	2.4	19	85	3	56	26	28	13	31	1.94
6462--6501	19	2.1	19	90	0	62	22	27	12	37	1.90
9772--9915	69	2.1	69	82	2	173	30	25	19	24	1.98
15012--15153	64	2.2	63	83	7	171	70	1	6	21	1.17
15070--15176	15	6.8	16	69	15	53	74	2	5	16	1.12
15141--15174	5	6.8	5	93	0	50	82	5	0	11	0.83
15182--15211	15	1.9	16	93	6	53	76	3	6	13	1.11
15281--15323	18	2.4	18	92	0	68	72	0	6	20	1.08
15917--15945	12	2.3	13	94	5	51	58	3	0	37	1.15
16768--16994	123	1.8	123	84	1	312	23	16	20	38	1.92
22472--22529	26	2.3	24	77	8	62	65	1	6	25	1.27
22604--22676	37	2.0	37	86	5	103	73	2	10	12	1.19
22644--22673	15	1.9	16	93	6	53	80	3	6	10	1.01
22743--22785	18	2.4	18	92	0	68	72	0	6	20	1.08
25509--25601	28	3.4	28	68	26	81	27	17	26	27	1.97
25528--25824	27	10.8	28	66	20	119	25	22	25	26	2.00
25585--25824	112	2.2	109	88	3	356	25	22	26	25	2.00
25528--25827	54	5.5	54	82	5	334	25	22	25	26	2.00
25939--26101	81	2.0	81	92	0	272	31	18	29	20	1.96
33401--33425	12	2.1	12	100	0	50	40	32	12	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34109--34170	3	20.7	3	100	0	124	33	0	0	66	0.92
35791--35883	21	4.6	20	78	4	96	40	18	23	17	1.90
35791--35883	41	2.3	41	98	0	177	40	18	23	17	1.90
35894--35966	20	3.7	20	92	0	119	26	28	19	26	1.98
36154--36197	22	2.0	22	95	0	79	20	45	15	18	1.85
36441--36504	20	3.2	20	84	0	83	14	18	21	45	1.85
37823--37867	18	2.5	18	88	0	72	26	44	15	13	1.83
38350--38391	20	2.1	20	86	0	57	35	26	21	16	1.94
38361--38405	20	2.3	20	80	3	56	40	20	22	17	1.92
38405--38462	14	3.9	14	79	16	62	48	22	17	12	1.80
38393--38479	32	2.7	33	92	3	149	48	20	18	12	1.80
38496--38553	14	3.9	14	77	16	62	10	15	25	48	1.77
38491--38569	32	2.4	33	91	2	124	11	16	24	48	1.79
38563--38609	20	2.3	20	92	0	76	14	23	25	36	1.93
40631--40686	19	2.9	19	97	0	103	50	14	21	14	1.78
40669--40695	14	1.9	14	100	0	54	48	14	22	14	1.81
40717--40754	20	1.9	20	94	0	67	15	21	23	39	1.92
41758--41811	24	2.2	24	90	0	81	24	16	20	38	1.92
41986--42022	12	3.1	12	96	0	65	70	0	27	2	1.01
44312--44436	33	3.8	33	81	4	171	44	19	21	15	1.87
44312--44443	66	2.0	66	92	0	219	43	18	21	16	1.88
44436--44525	33	2.7	33	92	0	144	13	22	22	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44440--44525	14	5.1	18	66	25	62	12	22	20	44	1.85
44632--44668	14	2.6	14	91	0	65	45	24	0	29	1.53
46012--46078	21	3.2	21	68	4	55	19	20	35	23	1.95
46051--46129	41	1.9	41	84	0	104	22	17	37	21	1.94
48055--48142	33	2.6	33	92	5	142	37	21	27	13	1.91
48125--48194	19	3.7	19	94	0	122	47	21	20	11	1.81
48055--48188	33	3.9	33	85	8	126	41	21	23	12	1.88
48190--48256	19	3.5	19	83	2	89	8	16	23	50	1.73
48765--48836	20	3.6	20	90	0	108	25	20	27	26	1.99
48905--48958	21	2.6	21	100	0	108	29	33	16	20	1.95

Tables:   1

The End!