genome.fa.s8808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008808.1 Hibiscus syriacus cultivar Beakdansim tig00111962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111006

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11361--11392	15	2.1	16	94	5	57	43	18	0	37	1.51
13597--13646	21	2.4	21	79	0	64	20	18	40	22	1.92
13578--13657	20	3.9	21	70	12	58	16	23	35	25	1.95
21447--21507	20	2.9	21	85	7	70	16	26	32	24	1.96
25269--25308	21	1.9	21	85	10	55	35	10	2	52	1.48
27721--28033	75	4.2	75	82	2	342	42	8	13	36	1.74
28127--28406	155	1.8	156	87	2	420	42	11	10	36	1.75
28388--28423	17	2.1	17	100	0	72	47	11	5	36	1.63
28595--28893	108	2.8	108	82	1	339	35	9	13	42	1.76
28846--29289	218	2.0	218	84	4	567	31	13	12	42	1.82
30027--30067	10	4.1	10	83	0	55	29	29	0	41	1.56
30109--30149	18	2.3	18	91	4	66	29	4	2	63	1.28
33909--33938	15	2.0	15	93	0	51	23	20	50	6	1.71
34559--34587	2	14.5	2	100	0	58	0	48	0	51	1.00
34991--35229	126	1.9	126	96	0	442	28	7	21	41	1.80
38870--38900	16	1.9	16	93	0	53	0	22	3	74	0.96
38896--38948	26	2.0	28	85	7	74	0	24	15	60	1.35
39357--39449	3	31.0	3	93	0	159	64	1	2	32	1.12
39779--39919	40	3.6	39	90	2	214	19	21	9	49	1.76
39858--40497	116	5.6	114	87	5	862	28	20	13	38	1.90
39858--40519	233	2.9	229	89	2	992	29	19	12	37	1.90
41226--41576	84	4.2	84	95	0	621	33	21	14	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42598--42651	10	5.8	10	79	16	71	0	12	0	87	0.56
42597--42648	16	3.3	16	86	7	72	0	13	0	86	0.57
42597--42651	26	2.1	26	96	0	101	0	14	0	85	0.60
54929--55004	26	2.8	29	76	15	90	0	22	11	65	1.25
55411--55492	3	27.7	3	92	2	139	64	0	2	32	1.07
62505--62542	19	2.0	19	100	0	76	21	15	15	47	1.82
62637--62739	30	3.4	30	94	0	179	31	24	18	26	1.98
62637--62766	30	4.3	30	90	1	98	33	24	17	24	1.97
62637--62764	60	2.1	61	86	1	177	32	25	17	24	1.97
62725--62817	31	3.0	31	79	3	98	34	21	17	26	1.95
62992--63020	4	7.2	4	100	0	58	48	24	0	27	1.51
63362--63408	2	24.0	2	95	4	87	51	0	0	48	1.00
68817--68857	22	1.9	21	85	5	55	36	9	12	41	1.76
69003--69188	60	3.1	60	88	0	266	31	17	22	29	1.96
69254--69296	20	2.2	20	86	0	59	23	4	16	55	1.59
69293--69404	44	2.5	44	89	2	163	40	5	23	31	1.77
74574--74599	13	2.0	13	100	0	52	23	15	15	46	1.83
76540--76633	29	3.2	29	77	16	104	26	20	15	37	1.93
76546--76640	31	3.2	31	75	17	110	22	22	17	37	1.94
76535--76658	58	2.1	58	87	0	176	25	22	16	36	1.94
76829--76866	5	7.6	5	87	0	58	73	2	0	23	0.95
76829--76872	15	2.9	15	82	3	61	70	2	0	27	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76899--76960	28	2.2	28	82	8	72	45	1	1	51	1.20
85894--85934	20	2.0	20	100	0	82	39	21	4	34	1.75
101111--101316	74	2.8	75	84	4	256	24	30	23	22	1.99
109780--109903	54	2.3	54	88	0	176	21	30	23	24	1.99

Tables:   1

The End!