genome.fa.s8809.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008809.1 Hibiscus syriacus cultivar Beakdansim tig00111963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55947

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8872--9077	74	2.8	75	84	4	256	24	30	23	22	1.99
14856--14895	21	1.9	21	89	0	62	25	40	25	10	1.86
17532--17655	54	2.3	54	88	0	176	21	30	23	24	1.99
20345--20380	2	18.0	2	100	0	72	50	0	0	50	1.00
23637--23674	19	2.0	19	89	0	58	52	15	15	15	1.75
23765--23817	20	2.7	20	85	5	63	49	24	13	13	1.77
23804--23999	41	4.8	41	88	4	249	37	23	19	19	1.94
23803--23996	20	9.6	20	82	5	194	36	23	19	20	1.95
27426--27526	34	3.0	33	78	4	112	41	22	20	14	1.89
27459--27543	19	4.7	19	74	15	81	42	22	21	14	1.88
27533--27574	19	2.2	19	86	0	57	14	21	23	40	1.90
27540--27585	19	2.4	19	100	0	92	10	15	26	47	1.78
27555--27648	33	2.8	32	87	3	125	12	19	21	46	1.82
27540--27648	19	6.3	17	72	20	68	12	18	22	46	1.82
27755--27791	14	2.6	14	91	0	65	45	21	0	32	1.52
29112--29178	21	3.2	21	68	4	55	19	20	35	23	1.95
29112--29234	42	2.9	41	79	7	113	22	18	36	21	1.95
31067--31120	25	2.1	25	83	10	65	59	16	7	16	1.59
31179--31260	20	4.2	20	80	9	96	46	17	23	13	1.83
31177--31308	19	7.1	19	75	13	123	44	18	23	13	1.85
31315--31392	20	3.8	20	77	9	86	10	19	19	51	1.75
31864--32098	20	11.6	20	77	8	199	19	18	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31865--32098	40	5.8	41	78	9	223	19	18	23	38	1.93
32148--32201	20	2.7	19	75	8	63	16	18	31	33	1.93
35503--35542	2	20.0	2	94	0	71	47	0	2	50	1.14
40784--40856	36	2.1	36	92	2	121	31	5	17	45	1.72
45741--45770	14	2.1	14	93	0	51	50	6	0	43	1.28
45850--46044	7	27.9	7	77	8	146	17	1	31	49	1.57
47666--47696	16	1.9	16	93	0	53	38	16	16	29	1.90
48075--48107	17	1.9	17	100	0	66	27	18	24	30	1.98
48092--48202	35	3.1	35	92	2	168	22	17	27	32	1.96
48130--48182	11	4.6	11	72	9	52	24	18	26	30	1.98
48066--48193	23	5.7	23	65	16	63	23	17	28	30	1.97

Tables:   1

The End!