genome.fa.s8813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008813.1 Hibiscus syriacus cultivar Beakdansim tig00111975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  252071

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8798--8823	13	2.0	13	100	0	52	0	0	15	84	0.62
12507--12547	17	2.5	17	80	7	50	78	0	9	12	0.98
13401--13425	11	2.3	11	100	0	50	0	0	8	92	0.40
15455--15494	20	1.9	22	85	10	57	40	12	30	17	1.86
16664--16725	27	2.2	28	78	13	74	59	11	17	11	1.60
18002--18047	23	2.0	21	84	12	56	36	17	13	32	1.88
18016--18061	24	2.0	23	82	4	56	41	15	15	28	1.87
25281--25320	19	2.0	20	90	4	64	25	10	0	65	1.24
25614--25647	17	2.0	17	88	11	52	82	5	11	0	0.83
29063--29105	20	2.2	20	87	4	61	32	9	6	51	1.61
29449--29474	13	2.0	13	100	0	52	23	38	0	38	1.55
29678--29732	16	3.4	16	73	26	53	14	23	0	61	1.33
29692--29746	16	3.4	16	76	18	53	18	18	0	63	1.31
34915--34944	13	2.4	13	94	5	53	26	30	0	43	1.55
37672--37700	15	2.0	15	93	6	51	0	20	3	75	0.94
39949--39995	20	2.3	20	96	0	85	17	25	19	38	1.92
46105--46139	14	2.5	14	90	0	52	74	2	14	8	1.17
46314--46415	46	2.1	48	81	15	113	33	1	13	50	1.53
47815--47867	19	2.6	21	88	8	74	45	5	13	35	1.67
56091--56140	18	2.8	17	82	11	55	4	14	6	76	1.13
56865--56917	19	2.6	21	88	8	74	45	5	13	35	1.67
63403--63472	13	6.0	11	70	16	52	2	18	2	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63417--63472	18	3.1	18	82	17	71	0	19	1	78	0.84
68217--68249	17	1.9	17	100	0	66	36	0	24	39	1.56
69013--69048	15	2.5	15	95	4	65	38	11	33	16	1.84
72088--72134	2	23.0	2	95	4	85	48	2	0	48	1.13
73880--73933	19	2.8	20	85	5	74	44	12	9	33	1.75
75412--75516	36	2.9	36	92	1	176	31	36	3	28	1.75
75415--75499	11	7.2	11	74	22	75	32	36	2	28	1.70
75817--75885	33	2.1	33	83	5	86	31	1	36	30	1.67
75867--75968	36	2.9	36	92	1	161	29	3	36	30	1.76
81507--81575	33	2.1	33	83	5	86	31	1	36	30	1.67
81557--81658	36	2.9	36	92	1	161	29	3	36	30	1.76
89695--89743	20	2.4	21	89	3	73	48	14	14	22	1.79
90323--90365	17	2.5	17	76	0	50	27	16	13	41	1.86
90358--90423	17	4.1	16	75	15	57	34	16	9	39	1.80
90372--90396	13	1.9	13	100	0	50	32	16	12	40	1.84
118518--118546	15	2.0	15	93	6	51	0	20	3	75	0.94
118539--118600	27	2.2	28	80	2	72	11	17	11	59	1.60
121123--121164	13	3.4	12	80	12	50	7	14	4	73	1.21
121118--121164	24	1.9	25	87	12	71	6	17	4	72	1.22
121911--121961	19	2.6	20	90	3	77	43	5	13	37	1.69
122819--122844	13	2.0	13	100	0	52	38	0	30	30	1.58
123189--123231	20	2.2	20	87	4	61	51	6	9	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125240--125272	16	2.1	16	100	0	66	42	6	18	33	1.75
129955--129987	16	2.1	16	94	0	57	45	6	15	33	1.70
134377--134407	11	2.8	11	95	0	53	64	9	9	16	1.48
138164--138213	18	2.8	17	82	11	55	6	12	6	76	1.16
146356--146424	33	2.1	33	97	0	129	27	17	17	37	1.92
151237--151310	22	3.3	23	85	9	107	58	14	12	14	1.64
151246--151311	22	2.8	24	90	9	118	59	16	10	13	1.61
151300--151332	14	2.4	14	90	10	50	78	0	21	0	0.75
153038--153062	11	2.3	11	100	0	50	16	36	8	40	1.77
159162--159198	19	1.9	19	88	0	56	40	5	16	37	1.71
170841--170891	19	2.6	20	90	3	77	45	5	11	37	1.65
179929--179971	23	1.9	21	81	13	50	34	13	18	32	1.90
181179--181207	15	2.0	15	93	6	51	0	20	3	75	0.94
181206--181259	25	2.2	25	82	0	63	11	12	14	61	1.58
182577--182662	13	7.2	12	72	22	58	30	3	36	30	1.74
182559--182663	36	2.9	36	94	1	176	29	4	35	30	1.78
194172--194257	13	7.2	12	72	22	58	29	3	37	30	1.74
194154--194258	36	2.9	36	95	1	185	28	4	36	30	1.78
216800--216833	16	2.1	17	89	10	54	11	23	0	64	1.26
219247--219285	19	2.0	20	90	10	62	41	5	12	41	1.65
219257--219298	19	2.2	19	83	8	50	35	9	11	42	1.74
219564--219605	16	2.6	16	96	0	75	28	11	33	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220802--220845	19	2.2	20	92	4	72	65	0	13	20	1.26
221256--221307	19	2.6	21	84	6	72	48	5	13	32	1.66
224681--224747	18	3.8	18	78	9	75	7	14	2	74	1.16
225018--225057	19	2.0	20	90	4	64	65	0	15	20	1.28
230251--230313	18	3.9	16	79	20	69	74	4	17	3	1.12
230253--230313	26	2.4	25	72	10	61	75	3	18	3	1.08
231026--231078	24	2.2	24	86	6	72	37	13	24	24	1.91
231840--231898	29	2.0	30	86	3	84	28	8	10	52	1.64
232772--232823	21	2.6	21	90	6	81	34	13	5	46	1.67
233174--233218	13	3.5	13	84	3	56	35	35	2	26	1.69
234545--234592	15	3.1	14	83	16	60	58	0	25	16	1.38
234541--234594	26	2.1	24	83	16	65	59	0	22	18	1.38
239749--239791	23	1.9	21	81	13	50	32	18	11	37	1.87
245320--245362	23	1.9	21	81	13	50	34	13	18	32	1.90
246502--246531	15	2.1	15	93	6	53	0	20	3	76	0.92
251310--251348	14	2.9	14	96	3	71	23	43	0	33	1.54
251794--251840	6	7.0	7	85	9	55	76	0	21	2	0.89

Tables:   1

The End!