Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008814.1 Hibiscus syriacus cultivar Beakdansim tig00111976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1021170
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 5
Found at i:546840 original size:10 final size:10
Alignment explanation
Indices: 546825--546853 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
546815 GCCTGATCAA
546825 TGGTCAACGC
1 TGGTCAACGC
546835 TGGTCAACGC
1 TGGTCAACGC
546845 TGGTCAACG
1 TGGTCAACG
546854 GTCAACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (10 bp):
TGGTCAACGC
Found at i:548941 original size:23 final size:24
Alignment explanation
Indices: 548912--548974 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 24
548902 AAAATTAGAA
*
548912 ATCATAACAGAATTCAGATCAGA-
1 ATCATAACAGAATCCAGATCAGAT
* *
548935 ATTATAACAGAATCCATATCAGAT
1 ATCATAACAGAATCCAGATCAGAT
*
548959 ATCATAATAGAATCCA
1 ATCATAACAGAATCCA
548975 ATGAAAATCC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 20 0.59
24 14 0.41
ACGTcount: A:0.48, C:0.17, G:0.10, T:0.25
Consensus pattern (24 bp):
ATCATAACAGAATCCAGATCAGAT
Found at i:549728 original size:28 final size:27
Alignment explanation
Indices: 549696--549755 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
549686 AATTCCAGCG
549696 TTTAGAGGTATTTAAGGACATTTTACAC
1 TTTAGAGGTATTT-AGGACATTTTACAC
* * * *
549724 TTTAGGGGTATTTTGGTCTTTTTACAC
1 TTTAGAGGTATTTAGGACATTTTACAC
549751 TTTAG
1 TTTAG
549756 GGGCATTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (27 bp):
TTTAGAGGTATTTAGGACATTTTACAC
Found at i:553263 original size:27 final size:28
Alignment explanation
Indices: 553204--553263 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
553194 AATTCCAAGG
* *
553204 TTTAGAGGTATTTTAGGCCATTTTACAC
1 TTTAGAGGTATTTTAGGCAAATTTACAC
*
553232 TTTAGAGGTATTTT-GGTAAATTTACAC
1 TTTAGAGGTATTTTAGGCAAATTTACAC
553259 TTTAG
1 TTTAG
553264 GGGCATTATC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (28 bp):
TTTAGAGGTATTTTAGGCAAATTTACAC
Found at i:553277 original size:27 final size:26
Alignment explanation
Indices: 553225--553281 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
553215 TTTAGGCCAT
* * *
553225 TTTACACTTTAGAGGTATTTTGGTAAA
1 TTTACACTTTAGAGGCATTATCGT-AA
*
553252 TTTACACTTTAGGGGCATTATCGTAA
1 TTTACACTTTAGAGGCATTATCGTAA
553278 TTTA
1 TTTA
553282 TCCATGGCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.44
Consensus pattern (26 bp):
TTTACACTTTAGAGGCATTATCGTAA
Found at i:557584 original size:33 final size:33
Alignment explanation
Indices: 557537--557604 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
557527 ACCTAGTACA
* *
557537 TATGGTGGGCACGACCTTATGTGTCATACGGAT
1 TATGGTGGACACGACCTTATGTGTCATAAGGAT
*
557570 TATGGTGGATACGACCTTATGTGTCATAAGGAT
1 TATGGTGGACACGACCTTATGTGTCATAAGGAT
557603 TA
1 TA
557605 GCACTACGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (33 bp):
TATGGTGGACACGACCTTATGTGTCATAAGGAT
Found at i:557732 original size:44 final size:44
Alignment explanation
Indices: 557683--557876 Score: 241
Period size: 44 Copynumber: 4.4 Consensus size: 44
557673 TGGTATATGG
* * * *
557683 TTATGGA-ATAATGGCAAGTGTATTGGTAAAGTAAGGTTACTAGC
1 TTATGGATA-AATGGTAAGTATATTGGTAAAATAAGCTTACTAGC
* *
557727 TTATGGATAAATGGTAAGTATATTGGTAAAATTAGTTTACTAGC
1 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACTAGC
*
557771 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACTAGC
* * *
557815 TTATTGATAAATGGTAAGTATATTGGTATAAT-AG-TATACGAGC
1 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCT-TACTAGC
557858 TTATGGTATTAAATGGTAA
1 TTATGG-A-TAAATGGTAA
557877 AATATTGCAC
Statistics
Matches: 135, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.01
43 14 0.10
44 109 0.81
45 11 0.08
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.36
Consensus pattern (44 bp):
TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACTAGC
Found at i:558302 original size:14 final size:14
Alignment explanation
Indices: 558279--558314 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
558269 TGTTCATAGC
*
558279 CACT-TTCATTGTT
1 CACTATTCATTATT
558292 CACTATTCATTATT
1 CACTATTCATTATT
558306 CACTATTCA
1 CACTATTCA
558315 CGGGTACTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 4 0.19
14 17 0.81
ACGTcount: A:0.25, C:0.25, G:0.03, T:0.47
Consensus pattern (14 bp):
CACTATTCATTATT
Found at i:560008 original size:27 final size:28
Alignment explanation
Indices: 559952--560014 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 28
559942 AATTCTAGGG
* *
559952 TTTAGAGGTATTTTAGGCCATTTTATAC
1 TTTAGGGGTATTTTAGGCCATTTTACAC
*
559980 TTTAGGGGTATTTT-GGTCATTTTACAC
1 TTTAGGGGTATTTTAGGCCATTTTACAC
560007 TTTAGGGG
1 TTTAGGGG
560015 AATTATCGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 19 0.59
28 13 0.41
ACGTcount: A:0.21, C:0.10, G:0.24, T:0.46
Consensus pattern (28 bp):
TTTAGGGGTATTTTAGGCCATTTTACAC
Found at i:560618 original size:13 final size:13
Alignment explanation
Indices: 560600--560624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
560590 TTGACTTTTT
560600 GGTCAAAGTCAAC
1 GGTCAAAGTCAAC
560613 GGTCAAAGTCAA
1 GGTCAAAGTCAA
560625 TGCTCGGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (13 bp):
GGTCAAAGTCAAC
Found at i:562870 original size:24 final size:24
Alignment explanation
Indices: 562834--562896 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
562824 AAATCGTAAT
* * * *
562834 AGAATTCAAATCAGATATTAGAAC
1 AGAATCCATATCAGATATAAAAAC
* *
562858 ATAATCCATATCAGATATAAAAAT
1 AGAATCCATATCAGATATAAAAAC
562882 AGAATCCATATCAGA
1 AGAATCCATATCAGA
562897 AATCATAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.25
Consensus pattern (24 bp):
AGAATCCATATCAGATATAAAAAC
Found at i:562909 original size:24 final size:24
Alignment explanation
Indices: 562819--562909 Score: 67
Period size: 24 Copynumber: 3.8 Consensus size: 24
562809 GCAAACAAAA
* * * *
562819 ATCAGAAATCGTAATAGAATTCAA
1 ATCAGAAATCATAAAAGAATCCAT
* * * * *
562843 ATCAGATATTAGAACATAATCCAT
1 ATCAGAAATCATAAAAGAATCCAT
* *
562867 ATCAGATAT-AAAAATAGAATCCAT
1 ATCAGAAATCATAAA-AGAATCCAT
562891 ATCAGAAATCATAAAAGAA
1 ATCAGAAATCATAAAAGAA
562910 ATCAGATAAA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
23 3 0.06
24 45 0.87
25 4 0.08
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.24
Consensus pattern (24 bp):
ATCAGAAATCATAAAAGAATCCAT
Found at i:563676 original size:26 final size:27
Alignment explanation
Indices: 563633--563684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
563623 GGGTTTAGTG
563633 GTATTTTAGGCCATTTTACACTTTAGC
1 GTATTTTAGGCCATTTTACACTTTAGC
*
563660 GTATTTT-GGTCATTTTACACTTTAG
1 GTATTTTAGGCCATTTTACACTTTAG
563685 GGGCATTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.48
Consensus pattern (27 bp):
GTATTTTAGGCCATTTTACACTTTAGC
Found at i:571694 original size:22 final size:22
Alignment explanation
Indices: 571666--571724 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 22
571656 ATTCAACCTA
571666 ACTCAAATCCTCACTAGGATTC
1 ACTCAAATCCTCACTAGGATTC
* *
571688 ACTCAAATCATTACTAGGATTC
1 ACTCAAATCCTCACTAGGATTC
571710 ACTCAAATCACTCAC
1 ACTCAAATC-CTCAC
571725 ATGTGTTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 29 0.91
23 3 0.09
ACGTcount: A:0.36, C:0.31, G:0.07, T:0.27
Consensus pattern (22 bp):
ACTCAAATCCTCACTAGGATTC
Found at i:572046 original size:18 final size:19
Alignment explanation
Indices: 572017--572058 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
572007 ATTAAGCAAC
*
572017 CTTTTTTCCCTTTTTTTTT
1 CTTTTTTCCCTTTATTTTT
*
572036 GTTTTTT-CCTTTATTTTT
1 CTTTTTTCCCTTTATTTTT
572054 CTTTT
1 CTTTT
572059 CAATTTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (19 bp):
CTTTTTTCCCTTTATTTTT
Found at i:572065 original size:25 final size:22
Alignment explanation
Indices: 572037--572107 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 22
572027 TTTTTTTTTG
572037 TTTTTTCCTTTATTTTTCTTTTCAA
1 TTTTTT-CTTT-TTTTT-TTTTCAA
572062 TTTTTTCTTTTTTTTTTTTCGAA
1 TTTTTTCTTTTTTTTTTTTC-AA
*
572085 CTTTCTTCTTTTTCCTTTTTTTC
1 -TTTTTTCTTTTT--TTTTTTTC
572108 TTCGTGGAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
22 5 0.12
23 7 0.17
24 15 0.37
25 6 0.15
26 8 0.20
ACGTcount: A:0.07, C:0.17, G:0.01, T:0.75
Consensus pattern (22 bp):
TTTTTTCTTTTTTTTTTTTCAA
Found at i:576892 original size:20 final size:20
Alignment explanation
Indices: 576866--576915 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
576856 CGTTTCTAGC
*
576866 CGTTGGGGATGTTTTTGAG-
1 CGTTGGGGATGTTTTGGAGT
576885 CTGTTGGGGATGTTTTGGAGT
1 C-GTTGGGGATGTTTTGGAGT
576906 CGTTGGGGAT
1 CGTTGGGGAT
576916 TCAATTTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.10, C:0.06, G:0.44, T:0.40
Consensus pattern (20 bp):
CGTTGGGGATGTTTTGGAGT
Found at i:577079 original size:21 final size:21
Alignment explanation
Indices: 577024--577079 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
577014 GGGCTTGATA
*
577024 GTATCGATACTACTGTTCACG
1 GTATCGATACTATTGTTCACG
* *
577045 GTATCGATAGTATTGTTCATG
1 GTATCGATACTATTGTTCACG
577066 GTATCGATACTATT
1 GTATCGATACTATT
577080 ATAGCAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (21 bp):
GTATCGATACTATTGTTCACG
Found at i:577178 original size:21 final size:21
Alignment explanation
Indices: 577129--577179 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
577119 TGAGCATCGG
***
577129 TACTGTTCATGGTATTGATAA
1 TACTGTTCATGGTAACAATAA
* *
577150 TACAGTTCATGGTAACAATAC
1 TACTGTTCATGGTAACAATAA
577171 TACTGTTCA
1 TACTGTTCA
577180 CACATTATCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (21 bp):
TACTGTTCATGGTAACAATAA
Found at i:577232 original size:19 final size:20
Alignment explanation
Indices: 577171--577240 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
577161 GTAACAATAC
* * * *
577171 TACTGTTCACACATTATCAG
1 TACTATTCATACAATATCGG
*
577191 TACTATTGATACAATATCGG
1 TACTATTCATACAATATCGG
577211 TACTATTCATACAATA-CGG
1 TACTATTCATACAATATCGG
577230 TACTATTCATA
1 TACTATTCATA
577241 AAAAAATTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 14 0.32
20 30 0.68
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TACTATTCATACAATATCGG
Found at i:578661 original size:6 final size:6
Alignment explanation
Indices: 578650--578678 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
578640 ATTTTGAGTT
578650 AGAATA AGAATA AGAATA AGAATA AGAAT
1 AGAATA AGAATA AGAATA AGAATA AGAAT
578679 TTAATTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATA
Found at i:579458 original size:33 final size:34
Alignment explanation
Indices: 579421--579491 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
579411 CCTTTACAAT
579421 TCCCTAGT-TTTTCA-ATGGCTAA-ACTAGAACCAA
1 TCCCTA-TCTTTTCACATGGCTAAGA-TAGAACCAA
*
579454 TCCCTATCTTTTCACTTGGCTAAGATAGAACCAA
1 TCCCTATCTTTTCACATGGCTAAGATAGAACCAA
579488 TCCC
1 TCCC
579492 CTTTTACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
32 1 0.03
33 12 0.35
34 20 0.59
35 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (34 bp):
TCCCTATCTTTTCACATGGCTAAGATAGAACCAA
Found at i:579849 original size:21 final size:20
Alignment explanation
Indices: 579823--579873 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
579813 GGGCTTGATA
*
579823 GTATCGATATCATTGTTCACG
1 GTATCGATAT-ACTGTTCACG
*
579844 GTATCGATAATACTGTTCATG
1 GTATCGAT-ATACTGTTCACG
579865 GTATCGATA
1 GTATCGATA
579874 CTAGTGTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (20 bp):
GTATCGATATACTGTTCACG
Found at i:581518 original size:21 final size:20
Alignment explanation
Indices: 581494--581533 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
581484 ACATAACTCT
581494 TTTTGATTAAATTTTAATATA
1 TTTTGATTAAA-TTTAATATA
*
581515 TTTTTATTAAATTTAATAT
1 TTTTGATTAAATTTAATAT
581534 GTTATTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (20 bp):
TTTTGATTAAATTTAATATA
Found at i:581531 original size:20 final size:22
Alignment explanation
Indices: 581493--581533 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
581483 AACATAACTC
581493 TTTTTGATTAAATTTTAATATA
1 TTTTTGATTAAATTTTAATATA
581515 TTTTT-ATTAAA-TTTAATAT
1 TTTTTGATTAAATTTTAATAT
581534 GTTATTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTTGATTAAATTTTAATATA
Found at i:585112 original size:2 final size:2
Alignment explanation
Indices: 585105--585136 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
585095 TCCCAATTCA
585105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
585137 GTTCATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:585696 original size:139 final size:140
Alignment explanation
Indices: 585499--585757 Score: 353
Period size: 139 Copynumber: 1.9 Consensus size: 140
585489 AATTTGTCAC
* *
585499 TATATAACATTTTTACACCAAAAAATATGAAGAAAAATTTCTATTAGTATAAGTTTTCATAATGA
1 TATATAACATTTTTACACCAAAAAATAGGAAGAAAAAGTTCTATTAGTATAAGTTTTCATAATGA
585564 TTAAAATATATAACAACAAAAATAATTAATTAC-AAA-AAACTTAAATTTTATTAATTACAATAT
66 TTAAAATATATAACAACAAAAATAATTAATTACAAAACAAACTTAAATTTTATTAATTACAATAT
585627 ATTTTGTTAT
131 ATTTTGTTAT
* * * ** *
585637 TATATAACATTTTTGACACTACAAAATAGGGAGAAATGGTTCTGA-TAGTATAATTTTTCATAAT
1 TATATAACATTTTT-ACACCAAAAAATAGGAAGAAAAAGTTCT-ATTAGTATAAGTTTTCATAAT
*** * * *
585701 GATTAAAATATATAAGTTCAAAAATAATTTATTACAAAACAAACTTGATTTTTATTA
64 GATTAAAATATATAACAACAAAAATAATTAATTACAAAACAAACTTAAATTTTATTA
585758 TTTGATTTGA
Statistics
Matches: 103, Mismatches: 14, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
138 14 0.14
139 70 0.68
140 4 0.04
141 15 0.15
ACGTcount: A:0.47, C:0.08, G:0.07, T:0.38
Consensus pattern (140 bp):
TATATAACATTTTTACACCAAAAAATAGGAAGAAAAAGTTCTATTAGTATAAGTTTTCATAATGA
TTAAAATATATAACAACAAAAATAATTAATTACAAAACAAACTTAAATTTTATTAATTACAATAT
ATTTTGTTAT
Found at i:602505 original size:21 final size:21
Alignment explanation
Indices: 602481--602521 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
602471 TCGGTTTTGG
*
602481 AATTTTTCCTGGGATGTAACT
1 AATTTTTCCTGGGATATAACT
*
602502 AATTTTTCCTTGGATATAAC
1 AATTTTTCCTGGGATATAAC
602522 CTTCTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
AATTTTTCCTGGGATATAACT
Found at i:612897 original size:13 final size:13
Alignment explanation
Indices: 612879--612903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
612869 CTAAACATAC
612879 ATCAAAAAAATCA
1 ATCAAAAAAATCA
612892 ATCAAAAAAATC
1 ATCAAAAAAATC
612904 CCAAGATGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (13 bp):
ATCAAAAAAATCA
Found at i:614869 original size:27 final size:27
Alignment explanation
Indices: 614827--614892 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
614817 AATCCTTCTT
* *
614827 CCAACGTTAACCATAACAACATCCAGA
1 CCAACGTCAACTATAACAACATCCAGA
614854 CCAACGTCAACTATAACAACATCCAGA
1 CCAACGTCAACTATAACAACATCCAGA
614881 CCAACGTCAACT
1 CCAACGTCAACT
614893 TTTGGTTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.42, C:0.35, G:0.08, T:0.15
Consensus pattern (27 bp):
CCAACGTCAACTATAACAACATCCAGA
Found at i:618827 original size:29 final size:29
Alignment explanation
Indices: 618794--618890 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
618784 CTGCAGTGTA
*
618794 TTTTTCTGCACAGTTCTAACCAAAGCAGT
1 TTTTTCTGCACAGTTCAAACCAAAGCAGT
* **
618823 TTTTTCTGCACAGTTCGAACC-AAGTCTTT
1 TTTTTCTGCACAGTTCAAACCAAAG-CAGT
* *
618852 TTTTTTTGCA-ATGTTCAAACCAAATCAG-
1 TTTTTCTGCACA-GTTCAAACCAAAGCAGT
618880 TTTTTCTGCAC
1 TTTTTCTGCAC
618891 TGTCCGAACA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
28 13 0.24
29 40 0.73
30 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (29 bp):
TTTTTCTGCACAGTTCAAACCAAAGCAGT
Found at i:619105 original size:13 final size:13
Alignment explanation
Indices: 619089--619122 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
619079 AGAAAAATAA
619089 AAAAATAAATCTG
1 AAAAATAAATCTG
*
619102 AAAAATAAATTTG
1 AAAAATAAATCTG
619115 -AAAATAAA
1 AAAAATAAA
619123 AATAAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.24
Consensus pattern (13 bp):
AAAAATAAATCTG
Found at i:621067 original size:35 final size:37
Alignment explanation
Indices: 620998--621077 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
620988 ATACTATTTC
**
620998 CATCACCATAATCCATTTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATTCACCATTATCACGCCTATAT
*
621035 CATCACCATAGTCCA-TCACCA-TATCACGCCTATAT
1 CATCACCATAATCCATTCACCATTATCACGCCTATAT
621070 CATCACCA
1 CATCACCA
621078 AATTCTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 22 0.55
36 4 0.10
37 14 0.35
ACGTcount: A:0.31, C:0.36, G:0.04, T:0.29
Consensus pattern (37 bp):
CATCACCATAATCCATTCACCATTATCACGCCTATAT
Found at i:621549 original size:14 final size:15
Alignment explanation
Indices: 621515--621561 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
621505 AATTTGGGGT
621515 GCAAAAGAAAGAAAA
1 GCAAAAGAAAGAAAA
*
621530 GAAAAAG-AAGAAAA
1 GCAAAAGAAAGAAAA
*
621544 TCAAAAGCAAAAGAAAA
1 GCAAAAG--AAAGAAAA
621561 G
1 G
621562 TGAAGCAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
15 6 0.24
17 7 0.28
ACGTcount: A:0.72, C:0.06, G:0.19, T:0.02
Consensus pattern (15 bp):
GCAAAAGAAAGAAAA
Found at i:628304 original size:36 final size:35
Alignment explanation
Indices: 628214--628325 Score: 138
Period size: 35 Copynumber: 3.2 Consensus size: 35
628204 TTGGTGGTTA
* * * **
628214 TATAGGCATGA-AATGGTGATAGAAATTGATGATAA
1 TATAGGCGTGACAATGGTGATGGAAA-TGGTGATGT
628249 TATAGGCGTG-CAATGGTGATGGAATATGGTGATGT
1 TATAGGCGTGACAATGGTGATGGAA-ATGGTGATGT
628284 TATAGGCGTGACAATGGTGATGGAAGATGGTGATGT
1 TATAGGCGTGACAATGGTGATGGAA-ATGGTGATGT
628320 TATAGG
1 TATAGG
628326 TAGTATCTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
35 37 0.54
36 31 0.46
ACGTcount: A:0.32, C:0.04, G:0.34, T:0.29
Consensus pattern (35 bp):
TATAGGCGTGACAATGGTGATGGAAATGGTGATGT
Found at i:628703 original size:19 final size:20
Alignment explanation
Indices: 628661--628703 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
628651 GAAACCCCTT
*
628661 TGAAAACACATGATTTTAAA
1 TGAAAACACATAATTTTAAA
*
628681 TGAAAATACATAATTTT-AA
1 TGAAAACACATAATTTTAAA
628700 TGAA
1 TGAA
628704 GATAAATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (20 bp):
TGAAAACACATAATTTTAAA
Found at i:629447 original size:20 final size:21
Alignment explanation
Indices: 629409--629447 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
629399 GATCATCTAG
* *
629409 AAGCTAAGATAACATGTATAT
1 AAGCTAAGATAAAAGGTATAT
629430 AAGCT-AGATAAAAGGTAT
1 AAGCTAAGATAAAAGGTAT
629448 TGGACGTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (21 bp):
AAGCTAAGATAAAAGGTATAT
Found at i:632051 original size:16 final size:17
Alignment explanation
Indices: 632030--632062 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
632020 ACTTTGCAAC
632030 TTTCTTT-ACTTTTCTT
1 TTTCTTTGACTTTTCTT
*
632046 TTTCTTTGATTTTTCTT
1 TTTCTTTGACTTTTCTT
632063 CTTTTTCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTCTTTGACTTTTCTT
Found at i:634009 original size:15 final size:15
Alignment explanation
Indices: 633985--634020 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
633975 TTTGATAACT
*
633985 ATTCTATCCATTTCA
1 ATTCTTTCCATTTCA
634000 ATTCTTTCCATTTCA
1 ATTCTTTCCATTTCA
*
634015 TTTCTT
1 ATTCTT
634021 AATTATTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.25, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTCTTTCCATTTCA
Found at i:634255 original size:6 final size:6
Alignment explanation
Indices: 634220--634262 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
634210 CAAAAGCAAC
* *
634220 AAAAAG AAAAA- AAAGAAG AAAAAC AAAAAG AGAAAG AAAAAG A
1 AAAAAG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG A
634263 CTCCTACAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 3 0.10
6 25 0.81
7 3 0.10
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:641853 original size:35 final size:36
Alignment explanation
Indices: 641814--641894 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 36
641804 ATACGCTTGA
641814 AATGGTGATAGAAAT-TGATGATAATATAGGCGTG-C
1 AATGGTGAT-GAAATATGATGATAATATAGGCGTGAC
* * **
641849 AATGGTGATGGAATATGGTGATGTTATAGGCGTGAC
1 AATGGTGATGAAATATGATGATAATATAGGCGTGAC
641885 AATGGTGATG
1 AATGGTGATG
641895 GAAGATGGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
34 4 0.10
35 25 0.62
36 11 0.28
ACGTcount: A:0.32, C:0.05, G:0.33, T:0.30
Consensus pattern (36 bp):
AATGGTGATGAAATATGATGATAATATAGGCGTGAC
Found at i:641893 original size:36 final size:35
Alignment explanation
Indices: 641838--641914 Score: 136
Period size: 36 Copynumber: 2.2 Consensus size: 35
641828 TTGATGATAA
*
641838 TATAGGCGTGCAATGGTGATGGAATATGGTGATGT
1 TATAGGCGTGCAATGGTGATGGAAGATGGTGATGT
641873 TATAGGCGTGACAATGGTGATGGAAGATGGTGATGT
1 TATAGGCGTG-CAATGGTGATGGAAGATGGTGATGT
641909 TATAGG
1 TATAGG
641915 TAGTATCTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 10 0.25
36 30 0.75
ACGTcount: A:0.27, C:0.05, G:0.38, T:0.30
Consensus pattern (35 bp):
TATAGGCGTGCAATGGTGATGGAAGATGGTGATGT
Found at i:642294 original size:19 final size:21
Alignment explanation
Indices: 642251--642294 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
642241 GAAACCCCTT
*
642251 TGAAAATACATTGATTTTAAA
1 TGAAAATACATTAATTTTAAA
642272 TGAAAATACA-TAATTTT-AA
1 TGAAAATACATTAATTTTAAA
642291 TGAA
1 TGAA
642295 TATAAATGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 6 0.27
21 10 0.45
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (21 bp):
TGAAAATACATTAATTTTAAA
Found at i:643038 original size:20 final size:21
Alignment explanation
Indices: 643000--643038 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
642990 GATCATCTAG
* *
643000 AAGCTAAGATAACATGTATAT
1 AAGCTAAGATAAAAGGTATAT
643021 AAGCT-AGATAAAAGGTAT
1 AAGCTAAGATAAAAGGTAT
643039 TGGATGTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (21 bp):
AAGCTAAGATAAAAGGTATAT
Found at i:651120 original size:17 final size:17
Alignment explanation
Indices: 651098--651134 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
651088 GCAAGGTGGA
651098 ACATGTTTTTAGTTGCC
1 ACATGTTTTTAGTTGCC
651115 ACATGTTTTTAGTTGCC
1 ACATGTTTTTAGTTGCC
651132 ACA
1 ACA
651135 ACTATTTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (17 bp):
ACATGTTTTTAGTTGCC
Found at i:662119 original size:17 final size:17
Alignment explanation
Indices: 662097--662130 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
662087 GACTTAAAAC
662097 AAATGGTTAGGGTATAG
1 AAATGGTTAGGGTATAG
*
662114 AAATGGTTATGGTATAG
1 AAATGGTTAGGGTATAG
662131 GGGTAGGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (17 bp):
AAATGGTTAGGGTATAG
Found at i:662662 original size:15 final size:16
Alignment explanation
Indices: 662642--662674 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
662632 AATATGAAAG
662642 AAGAAAGGAAAT-GAT
1 AAGAAAGGAAATGGAT
662657 AAGAAAGGAAATGGAT
1 AAGAAAGGAAATGGAT
662673 AA
1 AA
662675 AAATGTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.27, T:0.12
Consensus pattern (16 bp):
AAGAAAGGAAATGGAT
Found at i:668921 original size:13 final size:12
Alignment explanation
Indices: 668902--668998 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
668892 TTATTGGCGT
668902 GATATGGTGATG
1 GATATGGTGATG
668914 GAATATGGTGAT-
1 G-ATATGGTGATG
*
668926 GATATAGGCG-T-
1 GATAT-GGTGATG
668937 GATAATGGTGATG
1 GAT-ATGGTGATG
668950 GACTATGGTGAT-
1 GA-TATGGTGATG
*
668962 GATATAGGCG-T-
1 GATAT-GGTGATG
*
668973 GATAATGGAGATG
1 GAT-ATGGTGATG
668986 GATTATGGTGATG
1 GA-TATGGTGATG
668999 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:668957 original size:36 final size:36
Alignment explanation
Indices: 668887--668999 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
668877 AATGGTAGGA
* *
668887 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
668922 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
668958 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
668994 TGATGA
1 TGATGA
669000 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:669386 original size:19 final size:20
Alignment explanation
Indices: 669339--669389 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
669329 GAAACCCCTT
**
669339 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
669359 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
669378 TGAAGATACATG
1 TGAAAATACATG
669390 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:672500 original size:14 final size:15
Alignment explanation
Indices: 672472--672515 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
672462 TTGCTTCACT
*
672472 TTTTCTTTGCTTTTTT
1 TTTTCTTT-CTTTTTC
672488 TTATTC-TTCTTTTTC
1 TT-TTCTTTCTTTTTC
672503 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
672516 GCACTCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 3 0.12
15 15 0.60
16 4 0.16
17 3 0.12
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTTCTTTCTTTTTC
Found at i:672993 original size:13 final size:12
Alignment explanation
Indices: 672974--673070 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
672964 TTATTGGCGT
672974 GATATGGTGATG
1 GATATGGTGATG
672986 GAATATGGTGAT-
1 G-ATATGGTGATG
*
672998 GATATAGGCG-T-
1 GATAT-GGTGATG
673009 GATAATGGTGATG
1 GAT-ATGGTGATG
673022 GACTATGGTGAT-
1 GA-TATGGTGATG
*
673034 GATATAGGCG-T-
1 GATAT-GGTGATG
*
673045 GATAATGGAGATG
1 GAT-ATGGTGATG
673058 GATTATGGTGATG
1 GA-TATGGTGATG
673071 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:673029 original size:36 final size:36
Alignment explanation
Indices: 672959--673071 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
672949 AATGGTAGGA
* *
672959 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
672994 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
673030 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
673066 TGATGA
1 TGATGA
673072 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:673457 original size:19 final size:20
Alignment explanation
Indices: 673410--673460 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
673400 GAAACCCCTT
**
673410 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
673430 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
673449 TGAAGATACATG
1 TGAAAATACATG
673461 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:676569 original size:14 final size:15
Alignment explanation
Indices: 676541--676584 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
676531 TTGCTTCACT
*
676541 TTTTCTTTGCTTTTTT
1 TTTTCTTT-CTTTTTC
676557 TTATTC-TTCTTTTTC
1 TT-TTCTTTCTTTTTC
676572 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
676585 GCACTCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 3 0.12
15 15 0.60
16 4 0.16
17 3 0.12
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTTCTTTCTTTTTC
Found at i:677050 original size:33 final size:34
Alignment explanation
Indices: 676991--677086 Score: 81
Period size: 33 Copynumber: 2.8 Consensus size: 34
676981 TGATGAATGA
* * *
676991 AGGATGAT-TTAATGGTGATGAAATGGTAATGG-T
1 AGGATGATGTTATTGGCG-TGATATGGTAATGGAT
*
677024 AGGATGATGTTATTGGCGTGATATGGTGATGGAAT
1 AGGATGATGTTATTGGCGTGATATGGTAATGG-AT
* *
677059 ATGG-TGATGATATAGGCGTGATAATGGT
1 A-GGATGATGTTATTGGCGTGAT-ATGGT
677087 GATCGACTAT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
33 20 0.38
34 7 0.13
35 18 0.35
36 7 0.13
ACGTcount: A:0.29, C:0.02, G:0.35, T:0.33
Consensus pattern (34 bp):
AGGATGATGTTATTGGCGTGATATGGTAATGGAT
Found at i:677098 original size:36 final size:36
Alignment explanation
Indices: 677028--677140 Score: 156
Period size: 36 Copynumber: 3.2 Consensus size: 36
677018 AATGGTAGGA
* *
677028 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
677063 TGATGATATAGGCGTGATAATGGTGATCGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* * *
677099 TGATGATATAGGTGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
677135 TGATGA
1 TGATGA
677141 AAATAGTATC
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
35 16 0.23
36 53 0.77
ACGTcount: A:0.27, C:0.04, G:0.35, T:0.34
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:677139 original size:13 final size:12
Alignment explanation
Indices: 677045--677140 Score: 65
Period size: 13 Copynumber: 7.9 Consensus size: 12
677035 ATTGGCGTGA
*
677045 TATGGTGATGGAA
1 TATGGTGAT-GAT
677058 TATGGTGATGA-
1 TATGGTGATGAT
*
677069 TATAGGCG-TGAT
1 TAT-GGTGATGAT
* *
677081 AATGGTGATCGAC
1 TATGGTGAT-GAT
677094 TATGGTGATGA-
1 TATGGTGATGAT
677105 TATAGGTG-TGAT
1 TAT-GGTGATGAT
* *
677117 AATGGAGATGGAT
1 TATGGTGAT-GAT
677130 TATGGTGATGA
1 TATGGTGATGA
677141 AAATAGTATC
Statistics
Matches: 66, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
11 18 0.27
12 19 0.29
13 29 0.44
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32
Consensus pattern (12 bp):
TATGGTGATGAT
Found at i:677527 original size:19 final size:20
Alignment explanation
Indices: 677480--677530 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
677470 GAAACCCCTT
**
677480 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
677500 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
677519 TGAAGATACATG
1 TGAAAATACATG
677531 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:680640 original size:14 final size:15
Alignment explanation
Indices: 680612--680655 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
680602 TTGCTTCACT
*
680612 TTTTCTTTGCTTTTTT
1 TTTTCTTT-CTTTTTC
680628 TTATTC-TTCTTTTTC
1 TT-TTCTTTCTTTTTC
680643 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
680656 GCACTCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 3 0.12
15 15 0.60
16 4 0.16
17 3 0.12
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTTCTTTCTTTTTC
Found at i:681117 original size:33 final size:33
Alignment explanation
Indices: 681058--681122 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
681048 TGATGAATGA
*
681058 AGGATGATTTAATGGTGATGAAATGGTAATGGC
1 AGGATGATTTAATGGCGATGAAATGGTAATGGC
* * *
681091 AGGATGATGTTATTGGCG-TGATATGGTGATGG
1 AGGATGAT-TTAATGGCGATGAAATGGTAATGG
681123 AATATGGTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 20 0.74
34 7 0.26
ACGTcount: A:0.28, C:0.03, G:0.37, T:0.32
Consensus pattern (33 bp):
AGGATGATTTAATGGCGATGAAATGGTAATGGC
Found at i:681129 original size:13 final size:12
Alignment explanation
Indices: 681110--681206 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
681100 TTATTGGCGT
681110 GATATGGTGATG
1 GATATGGTGATG
681122 GAATATGGTGAT-
1 G-ATATGGTGATG
*
681134 GATATAGGCG-T-
1 GATAT-GGTGATG
681145 GATAATGGTGATG
1 GAT-ATGGTGATG
681158 GACTATGGTGAT-
1 GA-TATGGTGATG
*
681170 GATATAGGCG-T-
1 GATAT-GGTGATG
*
681181 GATAATGGAGATG
1 GAT-ATGGTGATG
681194 GATTATGGTGATG
1 GA-TATGGTGATG
681207 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:681165 original size:36 final size:36
Alignment explanation
Indices: 681095--681207 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
681085 AATGGCAGGA
* *
681095 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
681130 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
681166 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
681202 TGATGA
1 TGATGA
681208 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:681594 original size:19 final size:20
Alignment explanation
Indices: 681547--681597 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
681537 GAAACCCCTT
**
681547 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
681567 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
681586 TGAAGATACATG
1 TGAAAATACATG
681598 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:685317 original size:36 final size:36
Alignment explanation
Indices: 685247--685359 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
685237 AATGGTAGGA
* * *
685247 TGATGTTATTGGCGTGAT-ATGGTTATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
685282 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
685318 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
685354 TGATGA
1 TGATGA
685360 AAATAGTATC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 16 0.23
36 55 0.77
ACGTcount: A:0.27, C:0.04, G:0.35, T:0.34
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:685749 original size:19 final size:20
Alignment explanation
Indices: 685699--685749 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
685689 GAAACCCCTT
**
685699 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
*
685719 TGAAAATGCATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
685738 TGAAGATACATG
1 TGAAAATACATG
685750 CTCTTGGCCG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:695618 original size:36 final size:36
Alignment explanation
Indices: 695566--695664 Score: 155
Period size: 36 Copynumber: 2.8 Consensus size: 36
695556 GATACTATTT
* *
695566 TCATCGCCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
695602 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
695638 TCATCACCATATTCCATCACCA-TATCA
1 TCATCACCATAATCCATCACCATTATCA
695665 TGTCAATAAC
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
35 5 0.08
36 54 0.92
ACGTcount: A:0.30, C:0.36, G:0.04, T:0.29
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:695621 original size:13 final size:11
Alignment explanation
Indices: 695599--695665 Score: 64
Period size: 13 Copynumber: 5.6 Consensus size: 11
695589 TATCACGCCT
695599 ATATCATCACC
1 ATATCATCACC
695610 ATAGTCCATCACC
1 ATA-T-CATCACC
*
695623 ATTATCA-CGCC
1 A-TATCATCACC
695634 TATATCATCACC
1 -ATATCATCACC
695646 ATATTCCATCACC
1 ATA-T-CATCACC
695659 ATATCAT
1 ATATCAT
695666 GTCAATAACA
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
11 17 0.36
12 9 0.19
13 19 0.40
14 2 0.04
ACGTcount: A:0.33, C:0.34, G:0.03, T:0.30
Consensus pattern (11 bp):
ATATCATCACC
Found at i:696156 original size:14 final size:15
Alignment explanation
Indices: 696122--696168 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
696112 AATTTGGAGT
696122 GCAAAAGAAAGAAAA
1 GCAAAAGAAAGAAAA
*
696137 GAAAAAG-AAGAAAA
1 GCAAAAGAAAGAAAA
*
696151 TCAAAAGCAAAAGAAAA
1 GCAAAAG--AAAGAAAA
696168 G
1 G
696169 TGAAGCAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
15 6 0.24
17 7 0.28
ACGTcount: A:0.72, C:0.06, G:0.19, T:0.02
Consensus pattern (15 bp):
GCAAAAGAAAGAAAA
Found at i:699677 original size:36 final size:36
Alignment explanation
Indices: 699625--699737 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
699615 GATACTATTT
*
699625 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
699661 TCATCACCATAGTCCATCACCATTATCACGTCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
699697 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
699732 ACATCA
1 TCATCA
699738 TCCTACCATT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 16 0.23
36 54 0.77
ACGTcount: A:0.33, C:0.35, G:0.04, T:0.28
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:699771 original size:71 final size:71
Alignment explanation
Indices: 699625--699772 Score: 160
Period size: 71 Copynumber: 2.1 Consensus size: 71
699615 GATACTATTT
* * *
699625 TCATCACCATAATCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCAC
1 TCATCACCATAATCCATCACCATTATCACGCCAATAACATCACCATAG-CCATCACCATTATCAC
* *
699690 GTCTATA
65 ATCTAAA
* *
699697 TCATCACCATATTCCATCACCA-TATCACGCCAATAACATCATCC-TA-CCATTACCATTTCATC
1 TCATCACCATAATCCATCACCATTATCACGCCAATAACATCA-CCATAGCCATCACCA-TT-ATC
699759 ACCAT-TAAA
63 A-CATCTAAA
699768 TCATC
1 TCATC
699773 CTTCATTCAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
69 8 0.12
70 2 0.03
71 31 0.48
72 24 0.37
ACGTcount: A:0.32, C:0.35, G:0.03, T:0.30
Consensus pattern (71 bp):
TCATCACCATAATCCATCACCATTATCACGCCAATAACATCACCATAGCCATCACCATTATCACA
TCTAAA
Found at i:701143 original size:24 final size:25
Alignment explanation
Indices: 701097--701151 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
701087 ATAGTTATGC
*
701097 CACTTGAAGTTCAAAAAGATGTG-T
1 CACTTGAAGTGCAAAAAGATGTGAT
* * *
701121 CACTTGAAGTGCCACAAGTTGTGAT
1 CACTTGAAGTGCAAAAAGATGTGAT
701146 CA-TTGA
1 CACTTGA
701152 GGCTCCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (25 bp):
CACTTGAAGTGCAAAAAGATGTGAT
Found at i:713293 original size:20 final size:21
Alignment explanation
Indices: 713255--713293 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
713245 ATTCCCCTGT
*
713255 GGGGGGAATCGGTTCCCTCAA
1 GGGGGGAATCGATTCCCTCAA
*
713276 GGGGGG-ATCGATTTCCTC
1 GGGGGGAATCGATTCCCTC
713294 CGCAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCTCAA
Found at i:715640 original size:17 final size:17
Alignment explanation
Indices: 715618--715652 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
715608 AATTGGCCTA
*
715618 ATCATTACTCGATTTAC
1 ATCATTACTCAATTTAC
715635 ATCATTACTCAATTTAC
1 ATCATTACTCAATTTAC
715652 A
1 A
715653 ACATAACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (17 bp):
ATCATTACTCAATTTAC
Found at i:723359 original size:90 final size:90
Alignment explanation
Indices: 723213--723384 Score: 274
Period size: 90 Copynumber: 1.9 Consensus size: 90
723203 CCTATGTGCC
* *
723213 TTGCATATGACCAGCCCCCATGTCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGTTCTC
1 TTGCATATGAACAGCCCCCATGTCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGCTCTC
723278 TCCCTATTCGGCCAAGCCATGTGTT
66 TCCCTATTCGGCCAAGCCATGTGTT
* * * *
723303 TTGCATGTGAACAG-CCCCATGTGCCTTGCATGTGGTTTATTTAGGTGCCAAGATGAAGAGCTCT
1 TTGCATATGAACAGCCCCCATGT-CCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGCTCT
723367 CTCCCTATTCGGCCAAGC
65 CTCCCTATTCGGCCAAGC
723385 ATCATTTCCC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
89 8 0.11
90 67 0.89
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (90 bp):
TTGCATATGAACAGCCCCCATGTCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGCTCTC
TCCCTATTCGGCCAAGCCATGTGTT
Found at i:728439 original size:24 final size:23
Alignment explanation
Indices: 728385--728440 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 23
728375 TCTTTTTCTT
728385 TTTTTTTTGAGTGCTTTCAATTTC
1 TTTTTTTTGAGTGCTTTC-ATTTC
*
728409 TTCTTTTTGAGTGCTTTC-TTTC
1 TTTTTTTTGAGTGCTTTCATTTC
728431 TGATTTTTTT
1 T--TTTTTTT
728441 TCTTGCTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.18
24 23 0.82
ACGTcount: A:0.09, C:0.12, G:0.12, T:0.66
Consensus pattern (23 bp):
TTTTTTTTGAGTGCTTTCATTTC
Found at i:737090 original size:24 final size:24
Alignment explanation
Indices: 737053--737099 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
737043 TGGCTTTGCT
*
737053 TTCTTTTTGAAATTCTTTGTTTTC
1 TTCTTTTTGAAATTCTTTCTTTTC
*
737077 TTCTTTTCTG-AATTTTTTCTTTT
1 TTCTTTT-TGAAATTCTTTCTTTT
737100 TTTTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.11, C:0.13, G:0.06, T:0.70
Consensus pattern (24 bp):
TTCTTTTTGAAATTCTTTCTTTTC
Found at i:745429 original size:13 final size:13
Alignment explanation
Indices: 745411--745448 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
745401 CTGCGGAATT
*
745411 GATGTTCTTGATG
1 GATGTTGTTGATG
*
745424 GATGTTGATGATG
1 GATGTTGTTGATG
745437 G-TGTTGTTGATG
1 GATGTTGTTGATG
745449 AAATGGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.45
Consensus pattern (13 bp):
GATGTTGTTGATG
Found at i:750341 original size:13 final size:11
Alignment explanation
Indices: 750300--750384 Score: 75
Period size: 11 Copynumber: 7.2 Consensus size: 11
750290 ACAATCTGTC
750300 CATCACCATTAT
1 CATCACCA-TAT
750312 CA-CACCTATAT
1 CATCACC-ATAT
750323 CATCACCATAGT
1 CATCACCATA-T
750335 CCATCACCATTAT
1 -CATCACCA-TAT
*
750348 CA-CGCCTATAT
1 CATCACC-ATAT
750359 CATCACCATATT
1 CATCACCATA-T
750371 CCATCACCATAT
1 -CATCACCATAT
750383 CA
1 CA
750385 CGCCTATATT
Statistics
Matches: 62, Mismatches: 2, Indels: 19
0.75 0.02 0.23
Matches are distributed among these distances:
11 25 0.40
12 16 0.26
13 19 0.31
14 2 0.03
ACGTcount: A:0.33, C:0.36, G:0.02, T:0.28
Consensus pattern (11 bp):
CATCACCATAT
Found at i:750344 original size:36 final size:36
Alignment explanation
Indices: 750297--750401 Score: 176
Period size: 36 Copynumber: 2.9 Consensus size: 36
750287 GATACAATCT
*
750297 GTCCATCACCATTATCACACCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
750333 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
* *
750369 TTCCATCACCA-TATCACGCCTATATTATCACCA
1 GTCCATCACCATTATCACGCCTATATCATCACCA
750402 ACTTATAAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
35 21 0.32
36 45 0.68
ACGTcount: A:0.31, C:0.36, G:0.04, T:0.29
Consensus pattern (36 bp):
GTCCATCACCATTATCACGCCTATATCATCACCATA
Found at i:753704 original size:13 final size:13
Alignment explanation
Indices: 753686--753747 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 13
753676 AGATACTATT
753686 TCCATCACCATAA
1 TCCATCACCATAA
* *
753699 TCCATCTTCCATTA
1 TCCATC-ACCATAA
753713 T-CA-CACC-TATA
1 TCCATCACCATA-A
*
753724 T-CATCACCATAG
1 TCCATCACCATAA
753736 TCCATCACCATA
1 TCCATCACCATA
753748 TCACGCCTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.15
12 6 0.15
13 20 0.51
14 6 0.15
ACGTcount: A:0.32, C:0.37, G:0.02, T:0.29
Consensus pattern (13 bp):
TCCATCACCATAA
Found at i:753757 original size:35 final size:37
Alignment explanation
Indices: 753688--753767 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
753678 ATACTATTTC
*
753688 CATCACCATAATCCATCTTCCATTATCACACCTATAT
1 CATCACCATAATCCATCTACCATTATCACACCTATAT
* *
753725 CATCACCATAGTCCATC-ACCA-TATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACACCTATAT
753760 CATCACCA
1 CATCACCA
753768 AATTCTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 21 0.52
36 3 0.08
37 16 0.40
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACACCTATAT
Found at i:756671 original size:15 final size:16
Alignment explanation
Indices: 756625--756672 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 16
756615 ATGAAACCCC
756625 TTTGAAAATACATGAT
1 TTTGAAAATACATGAT
*
756641 TTTAAAGAAGATACATGA-
1 TTT---GAAAATACATGAT
756659 TTTGAAAATACATG
1 TTTGAAAATACATG
756673 GTTCTGTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 10 0.37
16 3 0.11
18 3 0.11
19 11 0.41
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (16 bp):
TTTGAAAATACATGAT
Found at i:758443 original size:22 final size:21
Alignment explanation
Indices: 758415--758485 Score: 65
Period size: 20 Copynumber: 3.4 Consensus size: 21
758405 TCAGATGAAT
*
758415 AGTATCGATACCGAGTTAAAG
1 AGTATCGATACCGAGATAAAG
* *
758436 AAGTATCGATACTGAGATATAG
1 -AGTATCGATACCGAGATAAAG
* **
758458 -GTATCGATACCAAGAGGAAG
1 AGTATCGATACCGAGATAAAG
758478 -GTATCGAT
1 AGTATCGAT
758486 CCGTAATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 23 0.56
22 18 0.44
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (21 bp):
AGTATCGATACCGAGATAAAG
Found at i:759008 original size:55 final size:54
Alignment explanation
Indices: 758907--759062 Score: 249
Period size: 55 Copynumber: 2.9 Consensus size: 54
758897 GCAATTTCCT
* *
758907 TATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTGTATGAATTATCG
1 TATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCG
*
758961 TATTGGCACTATGTGTGCAACCCCACGTAATTCATAATGAGTTTATGAATTACCG
1 TATTGGCACTATGTGTGCAA-CCCACGAAATTCATAATGAGTTTATGAATTACCG
* * *
759016 TATTGGCACTATGTGTGTAACCCTCGAAATTCATAATTAGTTTATGA
1 TATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGA
759063 CTAACAGTAT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 44 0.47
55 50 0.53
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (54 bp):
TATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCG
Found at i:759563 original size:2 final size:2
Alignment explanation
Indices: 759556--759605 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
759546 GATGTGTTTA
759556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
759598 AT AT AT AT
1 AT AT AT AT
759606 TGAAGAATGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:765092 original size:54 final size:54
Alignment explanation
Indices: 764972--765351 Score: 503
Period size: 54 Copynumber: 7.0 Consensus size: 54
764962 TATATGTTAC
* *
764972 AATTTCCTTATTGGCACAATGTGTGCAACCCCACGAAATTCATAAT-ATGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAA-CCCACGAAATTCATAATGA-GTTTATG
* * *
765027 AATTTCTGTATTGGCATTATGTGTGCAACCCTCGAAATTCATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATG
*
765081 AATTTCCGTATTGGCACTATGTGTGCAACCCATGAAATTCATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATG
* * *
765135 AATTTTCGTATTGGCAATATGTGTGCAACCTCACGTAATTCATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAACC-CACGAAATTCATAATGAGTTTATG
* * *
765190 AATTACTGTATTGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATG
* * * * * * *
765244 AATTACCATATTTGTACTATGTTTACAACCCCACGTAATTCATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAA-CCCACGAAATTCATAATGAGTTTATG
* * *
765299 AATTAT-CGTATTGGCATTGTGTGTGCAACCCACGAAATTCATGATGAGTTTAT
1 AATT-TCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTAT
765352 AAATGACTGT
Statistics
Matches: 284, Mismatches: 37, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
54 168 0.59
55 116 0.41
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (54 bp):
AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATG
Found at i:765184 original size:109 final size:108
Alignment explanation
Indices: 764972--765351 Score: 505
Period size: 109 Copynumber: 3.5 Consensus size: 108
764962 TATATGTTAC
* *
764972 AATTTCCTTATTGGCACAATGTGTGCAACCCCACGAAATTCATAAT-ATGTTTATGAA-TTTCTG
1 AATTTCCGTATTGGCACTATGTGTGCAA-CCCACGAAATTCATAATGA-GTTTATGAATTTTC-G
* * *
765035 TATTGGCATTATGTGTGCAACCCTCGAAATTCATAATGAGTTTATG
63 TATTGGCAATATGTGTGCAACCCACGTAATTCATAATGAGTTTATG
*
765081 AATTTCCGTATTGGCACTATGTGTGCAACCCATGAAATTCATAATGAGTTTATGAATTTTCGTAT
1 AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTTTCGTAT
765146 TGGCAATATGTGTGCAACCTCACGTAATTCATAATGAGTTTATG
66 TGGCAATATGTGTGCAACC-CACGTAATTCATAATGAGTTTATG
* * * ** *
765190 AATTACTGTATTGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCATAT
1 AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTTTCGTAT
* * * * *
765255 TTGTACTATGTTTACAACCCCACGTAATTCATAATGAGTTTATG
66 TGGCAATATGTGTGCAA-CCCACGTAATTCATAATGAGTTTATG
* * *
765299 AATTAT-CGTATTGGCATTGTGTGTGCAACCCACGAAATTCATGATGAGTTTAT
1 AATT-TCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTAT
765352 AAATGACTGT
Statistics
Matches: 242, Mismatches: 24, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
108 47 0.19
109 193 0.80
110 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (108 bp):
AATTTCCGTATTGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTTTCGTAT
TGGCAATATGTGTGCAACCCACGTAATTCATAATGAGTTTATG
Found at i:765265 original size:163 final size:163
Alignment explanation
Indices: 764980--765370 Score: 554
Period size: 163 Copynumber: 2.4 Consensus size: 163
764970 ACAATTTCCT
* *
764980 TATTGGCACA-ATGTGTGCAACCCCACGAAATTCATAAT-ATGTTTATGAATTTCTGTATTGGCA
1 TATTGGCA-ATATGTGTGCAA-CCCACGAAATTCATAATGA-GTTTATGAATTACTGTATTGACA
* * * * *
765043 TTATGTGTGCAACCCTCGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTATGTGTGCA
63 CTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCATATTGGCACTATGTGTACA
* *
765108 A-CCCATGAAATTCATAATGAGTTTATGAATTTTCG
128 ACCCCACGAAATTCATAATGAGTTTATGAATTATCG
*
765143 TATTGGCAATATGTGTGCAACCTCACGTAATTCATAATGAGTTTATGAATTACTGTATTGACACT
1 TATTGGCAATATGTGTGCAACC-CACGAAATTCATAATGAGTTTATGAATTACTGTATTGACACT
* * *
765208 ATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCATATTTGTACTATGTTTACAAC
65 ATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCATATTGGCACTATGTGTACAAC
*
765273 CCCACGTAATTCATAATGAGTTTATGAATTATCG
130 CCCACGAAATTCATAATGAGTTTATGAATTATCG
* * * * *
765307 TATTGGCATTGTGTGTGCAACCCACGAAATTCATGATGAGTTTATAAATGACTGTATTGACACT
1 TATTGGCAATATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACTGTATTGACACT
765371 TAGGTGCAAA
Statistics
Matches: 204, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
162 3 0.01
163 149 0.73
164 52 0.25
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (163 bp):
TATTGGCAATATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACTGTATTGACACTA
TGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATTACCATATTGGCACTATGTGTACAACC
CCACGAAATTCATAATGAGTTTATGAATTATCG
Found at i:767183 original size:33 final size:33
Alignment explanation
Indices: 767138--767206 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
767128 TATTAAAATC
767138 ATCATATGATTGGTCTTTGGGCATACTCTAACA
1 ATCATATGATTGGTCTTTGGGCATACTCTAACA
* *
767171 ATCATATTATTGGTCTTTGGGCATACTTTAACA
1 ATCATATGATTGGTCTTTGGGCATACTCTAACA
767204 ATC
1 ATC
767207 TCCCACTAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (33 bp):
ATCATATGATTGGTCTTTGGGCATACTCTAACA
Found at i:772268 original size:66 final size:67
Alignment explanation
Indices: 772157--772286 Score: 208
Period size: 66 Copynumber: 2.0 Consensus size: 67
772147 ACGTGCACAC
* * *
772157 ATATGTATAACATGAAAAAAGGTCATAGACATAACGACAAGCATATTA-TTTTTTAACAATATAT
1 ATATATATAACATGAAAAAAGGGCATACACATAACGACAAGCATATTATTTTTTTAACAATATAT
772221 AT
66 AT
**
772223 ATATATATAACATGAAAAAAGGGCATACACATAACGGTAAGCATATTATTTTTTTAACAATATA
1 ATATATATAACATGAAAAAAGGGCATACACATAACGACAAGCATATTATTTTTTTAACAATATA
772287 CGGTAAGCAT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
66 43 0.74
67 15 0.26
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (67 bp):
ATATATATAACATGAAAAAAGGGCATACACATAACGACAAGCATATTATTTTTTTAACAATATAT
AT
Found at i:774255 original size:2 final size:2
Alignment explanation
Indices: 774244--774275 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
774234 TCATAATAAC
774244 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
774276 GAAAATAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:777151 original size:19 final size:19
Alignment explanation
Indices: 777127--777190 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
777117 CTTTGATTTC
777127 CTTTTT-TTTTAATTCTATT
1 CTTTTTCTTTT-ATTCTATT
* *
777146 CTTTTTCTTTTCTTCTTTT
1 CTTTTTCTTTTATTCTATT
*
777165 C-TTTTCTTCTTTTTCT-TT
1 CTTTTTCTT-TTATTCTATT
777183 -TTTTTCTT
1 CTTTTTCTT
777191 CTTTTTGTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 16 0.41
19 19 0.49
20 4 0.10
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (19 bp):
CTTTTTCTTTTATTCTATT
Found at i:777163 original size:8 final size:8
Alignment explanation
Indices: 777150--777212 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
777140 TCTATTCTTT
777150 TTCTTTTC
1 TTCTTTTC
777158 TTC--TT-
1 TTCTTTTC
777163 TTCTTTTC
1 TTCTTTTC
777171 TTCTTTTTC
1 TTC-TTTTC
*
777180 TTTTTTTTC
1 -TTCTTTTC
777189 TTCTTTT-
1 TTCTTTTC
777196 TGTCTTTTC
1 T-TCTTTTC
777205 TTTCTTTT
1 -TTCTTTT
777213 TGTACTCCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
5 3 0.07
6 2 0.04
7 3 0.07
8 18 0.40
9 16 0.36
10 3 0.07
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (8 bp):
TTCTTTTC
Found at i:777166 original size:13 final size:12
Alignment explanation
Indices: 777148--777207 Score: 68
Period size: 13 Copynumber: 4.7 Consensus size: 12
777138 ATTCTATTCT
777148 TTTTCTTTTCTTC
1 TTTTCTTTT-TTC
777161 TTTTCTTTTCTTC
1 TTTTCTTTT-TTC
777174 TTTTTCTTTTTT-
1 -TTTTCTTTTTTC
777186 TTCTTCTTTTTGTC
1 TT-TTCTTTTT-TC
777200 TTTTCTTT
1 TTTTCTTT
777208 CTTTTTGTAC
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.05
12 8 0.19
13 22 0.51
14 11 0.26
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:777169 original size:18 final size:18
Alignment explanation
Indices: 777148--777212 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
777138 ATTCTATTCT
777148 TTTTCTT-TTCTTCTTTTC
1 TTTTCTTCTT-TTCTTTTC
777166 TTTTCTTCTTTTTCTTTT-
1 TTTTCTTC-TTTTCTTTTC
*
777184 TTTTCTTC-TTT-TTGTC
1 TTTTCTTCTTTTCTTTTC
777200 TTTTCTTTCTTTT
1 TTTTC-TTCTTTT
777213 TGTACTCCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
15 3 0.07
16 8 0.20
17 3 0.07
18 18 0.44
19 7 0.17
20 2 0.05
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTCTTCTTTTCTTTTC
Found at i:777212 original size:26 final size:26
Alignment explanation
Indices: 777148--777213 Score: 59
Period size: 27 Copynumber: 2.5 Consensus size: 26
777138 ATTCTATTCT
777148 TTTTCTTTTCTTCTTTTCTT-TTCTTCT-
1 TTTTC-TTTCTT-TTTTCTTCTT-TTCTC
*
777175 TTTTC-TT-TTTTTTCTTCTTTTTGTC
1 TTTTCTTTCTTTTTTCTTC-TTTTCTC
777200 TTTTCTTTCTTTTT
1 TTTTCTTTCTTTTT
777214 GTACTCCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
23 7 0.21
24 5 0.15
25 9 0.27
26 2 0.06
27 10 0.30
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (26 bp):
TTTTCTTTCTTTTTTCTTCTTTTCTC
Found at i:777213 original size:18 final size:17
Alignment explanation
Indices: 777149--777213 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 17
777139 TTCTATTCTT
*
777149 TTTCTTTTCTTCTTTTC
1 TTTCTTTTTTTCTTTTC
*
777166 TTTTCTTCTTTTTCTTTTT
1 -TTTCTT-TTTTTCTTTTC
777185 TTTCTTCTTTTTGTCTTTTC
1 TTTC-T-TTTTT-TCTTTTC
777205 TTTCTTTTT
1 TTTCTTTTT
777214 GTACTCCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 14 0.35
19 15 0.38
20 11 0.28
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTCTTTTTTTCTTTTC
Found at i:778816 original size:23 final size:24
Alignment explanation
Indices: 778772--778817 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
778762 ATATATATAT
*
778772 ATATGAAAATAACTATCTTATAAC
1 ATATGAAAATAACTATCGTATAAC
778796 ATATG-AAAT-ACTATACGTATAA
1 ATATGAAAATAACTAT-CGTATAA
778818 AGTTAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 10 0.50
24 5 0.25
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.33
Consensus pattern (24 bp):
ATATGAAAATAACTATCGTATAAC
Found at i:780324 original size:46 final size:46
Alignment explanation
Indices: 780264--780525 Score: 409
Period size: 46 Copynumber: 5.7 Consensus size: 46
780254 TTATTCATTA
* ** * * *
780264 ATTTCAGTTATGGCATATTTTCATACCTTAATACATTCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
* *
780310 ATTTTAGTTATGGCATCCTTGCATGCCTTAATGCATCCGTTCATGG
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
*
780356 ATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
* *
780402 ATTTTAGTTATGGCATCCTTTCATGCCTTAA-GAATTCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
780447 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
*
780493 ATTTTAGTTATGGCATCGTTTCATGCCTTAATG
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATG
780526 ATAACATAGT
Statistics
Matches: 198, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 43 0.22
46 155 0.78
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (46 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
Found at i:780378 original size:26 final size:26
Alignment explanation
Indices: 780303--780518 Score: 131
Period size: 26 Copynumber: 9.3 Consensus size: 26
780293 AATACATTCG
780303 TTCATGCATTTTAGTTATGGCATCCT
1 TTCATGCATTTTAGTTATGGCATCCT
* * *
780329 TGCATGC--CTTA---AT-GCATCCG
1 TTCATGCATTTTAGTTATGGCATCCT
*
780349 TTCATGGATTTTAGTTATGGCATCCT
1 TTCATGCATTTTAGTTATGGCATCCT
** *
780375 TTCAT--ACCTTA---AT-GCATCCG
1 TTCATGCATTTTAGTTATGGCATCCT
780395 TTCATGCATTTTAGTTATGGCATCCT
1 TTCATGCATTTTAGTTATGGCATCCT
* * * *
780421 TTCATGC--CTTA---A--GAATTCG
1 TTCATGCATTTTAGTTATGGCATCCT
780440 TTCATGCATTTTAGTTATGGCATCCT
1 TTCATGCATTTTAGTTATGGCATCCT
* *
780466 TTCATGC--CTTA---AT-GCATCCG
1 TTCATGCATTTTAGTTATGGCATCCT
*
780486 TTCATGCATTTTAGTTATGGCATCGT
1 TTCATGCATTTTAGTTATGGCATCCT
780512 TTCATGC
1 TTCATGC
780519 CTTAATGATA
Statistics
Matches: 139, Mismatches: 26, Indels: 50
0.65 0.12 0.23
Matches are distributed among these distances:
19 11 0.08
20 35 0.25
21 10 0.07
22 10 0.07
24 14 0.10
25 6 0.04
26 53 0.38
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (26 bp):
TTCATGCATTTTAGTTATGGCATCCT
Found at i:780479 original size:91 final size:92
Alignment explanation
Indices: 780264--780526 Score: 420
Period size: 91 Copynumber: 2.9 Consensus size: 92
780254 TTATTCATTA
* ** * *
780264 ATTTCAGTTATGGCATATTTTCATACCTTAATACATTCGTTCATGCATTTTAGTTATGGCATCCT
1 ATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCT
* * *
780329 TGCATGCCTTAATGCATCCGTTCATGG
66 TTCATGCCTTAATGAATCCGTTCATGC
780356 ATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCT
1 ATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCT
*
780421 TTCATGCCTTAA-GAATTCGTTCATGC
66 TTCATGCCTTAATGAATCCGTTCATGC
* *
780447 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCGT
1 ATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCT
780512 TTCATGCCTTAATGA
66 TTCATGCCTTAATGA
780527 TAACATAGTC
Statistics
Matches: 159, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
91 86 0.54
92 73 0.46
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (92 bp):
ATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCT
TTCATGCCTTAATGAATCCGTTCATGC
Found at i:780482 original size:137 final size:138
Alignment explanation
Indices: 780264--780525 Score: 436
Period size: 137 Copynumber: 1.9 Consensus size: 138
780254 TTATTCATTA
* *
780264 ATTTCAGTTATGGCATATTTTCATACCTTAATACATTCGTTCATGCATTTTAGTTATGGCATCCT
1 ATTTCAGTTATGGCATACTTTCATACCTTAAGACATTCGTTCATGCATTTTAGTTATGGCATCCT
*
780329 TGCATGCCTTAATGCATCCGTTCATGGATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCC
66 TGCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCC
780394 GTTCATGC
131 GTTCATGC
* * *
780402 ATTTTAGTTATGGCATCCTTTCATGCCTTAAGA-ATTCGTTCATGCATTTTAGTTATGGCATCCT
1 ATTTCAGTTATGGCATACTTTCATACCTTAAGACATTCGTTCATGCATTTTAGTTATGGCATCCT
* * *
780466 TTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCGTTTCATGCCTTAATG
66 TGCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATACCTTAATG
780526 ATAACATAGT
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
137 87 0.76
138 28 0.24
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (138 bp):
ATTTCAGTTATGGCATACTTTCATACCTTAAGACATTCGTTCATGCATTTTAGTTATGGCATCCT
TGCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATACCTTAATGCATCC
GTTCATGC
Found at i:780940 original size:41 final size:41
Alignment explanation
Indices: 780883--780973 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
780873 ACTACCCTGG
*
780883 TATCGATACTTCTATACTATGGTACCCATACTCCCTTTCAA
1 TATCGATACTACTATACTATGGTACCCATACTCCCTTTCAA
** * * *
780924 TATCGATACTACTATACTATGGTGTCGATACTTCCTTTCAG
1 TATCGATACTACTATACTATGGTACCCATACTCCCTTTCAA
780965 TATCGATAC
1 TATCGATAC
780974 CATTTTGACA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.37
Consensus pattern (41 bp):
TATCGATACTACTATACTATGGTACCCATACTCCCTTTCAA
Found at i:785679 original size:32 final size:32
Alignment explanation
Indices: 785614--785679 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
785604 AAAACATGTT
* *
785614 TAAAATAATATATATATATATATATATAAAAA
1 TAAAATAATATATATATATAAAAATATAAAAA
785646 TAAAATAATATATAT-TAATAAAAATA-AACAAA
1 TAAAATAATATATATAT-ATAAAAATATAA-AAA
785678 TA
1 TA
785680 TTATTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 3 0.10
32 27 0.90
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (32 bp):
TAAAATAATATATATATATAAAAATATAAAAA
Found at i:785679 original size:78 final size:77
Alignment explanation
Indices: 785597--785741 Score: 181
Period size: 78 Copynumber: 1.9 Consensus size: 77
785587 ATTGGAAAAT
*
785597 AAATATTAAAACATGTT-TAAAA-TAAT-ATAT-ATATATATATATATAAAAATAAAATAATATA
1 AAATATTAAAA-AT-TTATAAAATTAATCAAATAATATATAT-TA-ATAAAAATAAAATAATA-A
*
785658 TATTAATAAAAATAAAC
61 TAATAATAAAAATAAAC
**
785675 AAATATTATTAATTTATAAAATTAATCAAATAATATATATTAATAAAAATAAAATAATAATAATA
1 AAATATTAAAAATTTATAAAATTAATCAAATAATATATATTAATAAAAATAAAATAATAATAATA
785740 AT
66 AT
785742 TTAAAATATT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
76 2 0.03
77 14 0.24
78 30 0.51
79 5 0.08
80 8 0.14
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (77 bp):
AAATATTAAAAATTTATAAAATTAATCAAATAATATATATTAATAAAAATAAAATAATAATAATA
ATAAAAATAAAC
Found at i:785684 original size:23 final size:24
Alignment explanation
Indices: 785615--785741 Score: 116
Period size: 24 Copynumber: 5.0 Consensus size: 24
785605 AAACATGTTT
*
785615 AAAATAATATATATATATATATATATA
1 AAAATAAAATA-ATATATAT-TA-ATA
785642 AAAATAAAATAATATATATTAATA
1 AAAATAAAATAATATATATTAATA
785666 AAAATAAACA-AATAT-TATTAATTTA
1 AAAATAAA-ATAATATATATTAA--TA
785691 TAAAATTAATCAAATAATATATATTAATA
1 -AAAA-T-A--AAATAATATATATTAATA
*
785720 AAAATAAAATAATA-ATAATAAT
1 AAAATAAAATAATATATATTAAT
785742 TTAAAATATT
Statistics
Matches: 88, Mismatches: 2, Indels: 24
0.77 0.02 0.21
Matches are distributed among these distances:
23 13 0.15
24 24 0.27
25 5 0.06
26 13 0.15
27 12 0.14
28 5 0.06
29 3 0.03
30 7 0.08
31 6 0.07
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATAAAATAATATATATTAATA
Found at i:785693 original size:27 final size:26
Alignment explanation
Indices: 785615--785744 Score: 99
Period size: 27 Copynumber: 4.9 Consensus size: 26
785605 AAACATGTTT
* *
785615 AAAATAATAT-ATATATATATATATATA
1 AAAATAAAATAATA-ATATA-ATTTATA
*
785642 AAAATAAAATAAT-ATAT-ATTAATA
1 AAAATAAAATAATAATATAATTTATA
*
785666 AAAATAAACA-AATATTATTAATTTATA
1 AAAATAAA-ATAATAATA-TAATTTATA
* * *
785693 AAATTAATCA-AATAATATATATTAATA
1 AAAATAA-AATAATAATATA-ATTTATA
785720 AAAATAAAATAATAATAATAATTTA
1 AAAATAAAATAATAAT-ATAATTTA
785745 AAATATTAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
24 16 0.20
25 3 0.04
26 8 0.10
27 50 0.61
28 5 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (26 bp):
AAAATAAAATAATAATATAATTTATA
Found at i:785693 original size:51 final size:53
Alignment explanation
Indices: 785614--785744 Score: 158
Period size: 54 Copynumber: 2.4 Consensus size: 53
785604 AAAACATGTT
*
785614 TAAAATAATATATATATATATATATATAAA-AATAAAATAATATATATTAATAAAAA
1 TAAAATAATA-ATA-ATA-ATTTATA-AAATAATAAAATAATATATATTAATAAAAA
* * *
785670 TAAACA-AATATTATTAATTTATAAAATTAATCAAATAATATATATTAATAAAAA
1 TAAA-ATAATAATAATAATTTATAAAA-TAATAAAATAATATATATTAATAAAAA
785724 TAAAATAATAATAATAATTTA
1 TAAAATAATAATAATAATTTA
785745 AAATATTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
52 3 0.05
53 7 0.11
54 44 0.68
55 2 0.03
56 8 0.12
57 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (53 bp):
TAAAATAATAATAATAATTTATAAAATAATAAAATAATATATATTAATAAAAA
Found at i:785715 original size:54 final size:54
Alignment explanation
Indices: 785648--785753 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
785638 TATAAAAATA
* *
785648 AAATAATATATATTAATAAAAATAAACA-AATATTATTAATTTATAAA-ATTAATC
1 AAATAATATATATTAATAAAAATAAA-ATAATAATAATAATTTA-AAATATTAATC
785702 AAATAATATATATTAATAAAAATAAAATAATAATAATAATTTAAAATATTAA
1 AAATAATATATATTAATAAAAATAAAATAATAATAATAATTTAAAATATTAA
785754 ACATATAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (54 bp):
AAATAATATATATTAATAAAAATAAAATAATAATAATAATTTAAAATATTAATC
Found at i:785774 original size:24 final size:24
Alignment explanation
Indices: 785733--785785 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
785723 ATAAAATAAT
*
785733 AATAATAATTTAAAATA-TTAAAC
1 AATAATAATTAAAAATATTTAAAC
785756 ATATAA-AATTAAAATATATTTAAAC
1 A-ATAATAATTAAAA-ATATTTAAAC
785781 AATAA
1 AATAA
785786 CTAAAACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 8 0.31
24 11 0.42
25 7 0.27
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (24 bp):
AATAATAATTAAAAATATTTAAAC
Found at i:785802 original size:37 final size:36
Alignment explanation
Indices: 785759--785828 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
785749 ATTAAACATA
* *
785759 TAAAATT-AAAATATATTTAAACAATAACTAAAACAAT
1 TAAAATTCAAAATATA-GTAAAAAATAA-TAAAACAAT
*
785796 TAAAATTCAAACTATAGTAAAAAATAATAAAAC
1 TAAAATTCAAAATATAGTAAAAAATAATAAAAC
785829 TTGTATCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 6 0.21
37 16 0.55
38 7 0.24
ACGTcount: A:0.63, C:0.09, G:0.01, T:0.27
Consensus pattern (36 bp):
TAAAATTCAAAATATAGTAAAAAATAATAAAACAAT
Found at i:787053 original size:3 final size:3
Alignment explanation
Indices: 787045--787103 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
787035 TAAAATTATT
* * * *
787045 TAA TAA TAA TAA TAA -AA TAA TTA TAA TTA TAA TTA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
787092 TAA AAA TAA TAA
1 TAA TAA TAA TAA
787104 AACCGGGATA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:787344 original size:20 final size:20
Alignment explanation
Indices: 787321--787382 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
787311 TTTGAACAAG
787321 TTCTTCTCATTATGAACTTC
1 TTCTTCTCATTATGAACTTC
* *
787341 TTCTTCGTCA-GATG-A---G
1 TTCTTC-TCATTATGAACTTC
787357 TTCTTCTCATTATGAACTTC
1 TTCTTCTCATTATGAACTTC
787377 TTCTTC
1 TTCTTC
787383 GTCAGATGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
15 3 0.09
16 9 0.28
17 1 0.03
19 1 0.03
20 15 0.47
21 3 0.09
ACGTcount: A:0.18, C:0.24, G:0.10, T:0.48
Consensus pattern (20 bp):
TTCTTCTCATTATGAACTTC
Found at i:787362 original size:19 final size:19
Alignment explanation
Indices: 787338--787399 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
787328 CATTATGAAC
787338 TTCTTCTTCGTCAGATGAG
1 TTCTTCTTCGTCAGATGAG
* * *
787357 TTCTTC-TCAT--TATGAAC
1 TTCTTCTTCGTCAGATG-AG
787374 TTCTTCTTCGTCAGATGAG
1 TTCTTCTTCGTCAGATGAG
787393 TTCTTCT
1 TTCTTCT
787400 CATTATGAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 3 0.09
17 7 0.21
18 6 0.18
19 14 0.42
20 3 0.09
ACGTcount: A:0.16, C:0.23, G:0.15, T:0.47
Consensus pattern (19 bp):
TTCTTCTTCGTCAGATGAG
Found at i:787366 original size:36 final size:36
Alignment explanation
Indices: 787319--787416 Score: 187
Period size: 36 Copynumber: 2.7 Consensus size: 36
787309 AGTTTGAACA
787319 AGTTCTTCTCATTATGAACTTCTTCTTCGTCAGATG
1 AGTTCTTCTCATTATGAACTTCTTCTTCGTCAGATG
787355 AGTTCTTCTCATTATGAACTTCTTCTTCGTCAGATG
1 AGTTCTTCTCATTATGAACTTCTTCTTCGTCAGATG
*
787391 AGTTCTTCTCATTATGAACTCCTTCT
1 AGTTCTTCTCATTATGAACTTCTTCT
787417 GGAAATGTTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 61 1.00
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.45
Consensus pattern (36 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCGTCAGATG
Found at i:787391 original size:20 final size:20
Alignment explanation
Indices: 787332--787391 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 20
787322 TCTTCTCATT
787332 ATGAACTTCTTCTTCGTCAG
1 ATGAACTTCTTCTTCGTCAG
* * *
787352 ATG-AGTTCTTC-TCAT--T
1 ATGAACTTCTTCTTCGTCAG
787368 ATGAACTTCTTCTTCGTCAG
1 ATGAACTTCTTCTTCGTCAG
787388 ATGA
1 ATGA
787392 GTTCTTCTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
16 3 0.10
17 7 0.23
18 6 0.20
19 7 0.23
20 7 0.23
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGAACTTCTTCTTCGTCAG
Found at i:787814 original size:116 final size:115
Alignment explanation
Indices: 787599--788084 Score: 704
Period size: 113 Copynumber: 4.3 Consensus size: 115
787589 GAATCATGCG
*
787599 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTC-T-TCTTCC-TCTTCAGATAAGTTCTTCTCA
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
787661 TTATGAACT-TTCTCTGAAAAAGTTGATCCATCGAGTGATGAATTCAAGCA
66 TTATGAACTCTAC-CTGGAAATGTTGATCCATCGAGTGATGAATTCAAGCA
* *
787711 AAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTCCTTCTTCAGATGAGTTATTCTC
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTC-TCTTCCTTCTTCAGATGAGTTCTTCTC
*
787776 ATTATGAACTCTACCTGGAAATGATGATCCATCGAGTGATGAATTCGAA-CA
65 ATTATGAACTCTACCTGGAAATGTTGATCCATCGAGTGATGAATTC-AAGCA
*
787827 AAAGGTTGAACAATTTCTTCTCATTATGAACTTCTTCTC--CCTTCTTCAGATGCA-TTCTTCTC
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCTTCCTTCTTCAGATG-AGTTCTTCTC
* * * *
787889 ATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATGAATTAAAGCA
65 ATTATGAACTCTACCTGGAAATGTTGATCCATCGAGTGATGAATTCAAGCA
* *
787940 AAACGTTGAACAAGTTCTTCTCATTATGAACTTC--CTCTTCCTACTTCAGATGAGTTCTTCTCA
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * **
788003 TTATGAACTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTGAGCA
66 TTATGAACTCTACCTGGAAATGTTGATCCATCGAGTGATGAATTCAAGCA
788053 AAAGGTTGAACAAGTTCTTCTCATTATGAACT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACT
788085 CTACCTGGCA
Statistics
Matches: 340, Mismatches: 23, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
111 3 0.01
112 36 0.11
113 194 0.57
114 1 0.00
115 8 0.02
116 94 0.28
117 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.36
Consensus pattern (115 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTACCTGGAAATGTTGATCCATCGAGTGATGAATTCAAGCA
Found at i:788079 original size:73 final size:72
Alignment explanation
Indices: 787992--788156 Score: 258
Period size: 73 Copynumber: 2.3 Consensus size: 72
787982 ACTTCAGATG
* * * **
787992 AGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAGTGATAAATTAAAGCAAAAG
788057 GTTGAACA
66 GTTGAA-A
* *
788065 AGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATAAATTAAAGTAAAAG
1 AGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAGTGATAAATTAAAGCAAAAG
788130 GTTGAAA
66 GTTGAAA
788137 AGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACT
788157 TCTTCCTTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 21 0.25
73 64 0.75
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Consensus pattern (72 bp):
AGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAGTGATAAATTAAAGCAAAAG
GTTGAAA
Found at i:788103 original size:186 final size:181
Alignment explanation
Indices: 787881--788219 Score: 570
Period size: 186 Copynumber: 1.8 Consensus size: 181
787871 TTCAGATGCA
*
787881 TTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATGAATTAAAGCAAAACGT
1 TTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATAAATTAAAGCAAAACGT
787946 TGAACAAGTTCTTCTCATTATGAACTTCCTCTTCCTACTTCAGATGAGTTCTTCTCATTATGAAC
66 TGAA-AAGTTCTTCTCATTATGAAC-T--TCTTCCTACTTCAGATGAGTTCTTCTCATTATGAAC
*
788011 TCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTGAACAAG
127 TCTACC-GGAAATGTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTGAACAAG
* *
788067 TTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATAAATTAAAGTAAAAGGT
1 TTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATAAATTAAAGCAAAACGT
* *
788132 TGAAAAGTTCTTCTCATTATGAACTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTT
66 TGAAAAGTTCTTCTCATTATGAACTTCTTCCTACTTCAGATGAGTTCTTCTCATTATGAACTCTA
*
788197 CCGGAAATGTTGATCCATTAAGT
131 CCGGAAATGTTGATCCATCAAGT
788220 AATGGATTCA
Statistics
Matches: 146, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
181 19 0.13
182 40 0.27
184 1 0.01
185 20 0.14
186 66 0.45
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (181 bp):
TTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGAGTGATAAATTAAAGCAAAACGT
TGAAAAGTTCTTCTCATTATGAACTTCTTCCTACTTCAGATGAGTTCTTCTCATTATGAACTCTA
CCGGAAATGTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTGAACAAG
Done.