Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008815.1 Hibiscus syriacus cultivar Beakdansim tig00111977_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95052

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5804--5939
64
2.1
65
85
6
179
27
22
18
30
1.97
11728--11803
23
3.4
22
78
7
91
26
25
22
26
2.00
14087--14120
12
2.7
13
86
9
52
41
11
0
47
1.40
17925--17958
17
1.9
17
88
5
50
58
0
17
23
1.38
22402--23281
467
1.9
467
83
2
1167
32
12
21
33
1.91
27112--27159
20
2.4
20
80
13
62
47
18
12
20
1.81
27145--27188
13
3.4
13
93
0
79
56
20
6
15
1.62
33254--33293
21
1.9
21
84
0
53
25
7
27
40
1.82
40935--40975
19
2.2
19
90
0
64
19
31
26
21
1.97
40942--40988
19
2.5
19
89
0
67
21
27
25
25
1.99
40995--41038
18
2.4
18
96
0
79
20
50
18
11
1.77
42345--42387
13
3.3
13
86
0
68
16
41
25
16
1.88
46318--46399
43
1.9
43
87
0
119
25
14
19
40
1.90
50654--50700
20
2.3
20
81
0
58
48
23
12
14
1.78
51594--51656
32
2.0
30
82
14
74
30
4
14
50
1.63
54205--54260
23
2.4
23
87
0
76
48
5
8
37
1.58
71754--71785
6
5.2
6
96
3
55
68
0
0
31
0.90
75585--75651
22
3.0
22
95
2
116
25
28
26
19
1.99
77346--77390
21
2.1
21
87
0
63
15
24
28
31
1.96
80533--80599
22
3.0
22
95
2
116
25
28
26
19
1.99
82297--82341
21
2.1
21
87
0
63
15
24
28
31
1.96
87100--87162
3
21.3
3
84
9
85
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87089--87163
29
2.8
28
80
17
95
61
0
1
37
1.05
90648--90729
36
2.3
36
87
8
130
19
35
18
26
1.95
92910--92957
22
2.3
21
89
7
71
43
6
12
37
1.68
92916--92957
22
1.9
22
95
0
75
38
7
11
42
1.69
93801--93870
4
17.8
4
76
16
58
75
2
1
20
1.00
93789--93870
34
2.5
33
80
9
87
75
2
1
20
0.98
93825--94006
14
12.8
14
68
23
71
75
1
3
18
1.03
93801--93967
37
4.6
38
69
16
88
74
2
3
19
1.08
93898--94036
24
5.4
27
68
18
93
75
2
6
15
1.10
93840--94037
50
3.9
50
78
14
167
74
2
5
18
1.09

Tables:   1

The End!