genome.fa.s8816.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008816.1 Hibiscus syriacus cultivar Beakdansim tig00111981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92171

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3214--3280	28	2.6	26	83	9	84	34	11	5	47	1.65
4510--4544	2	18.0	2	88	5	54	45	0	0	54	0.99
5866--5927	3	21.0	3	86	3	81	64	0	0	35	0.94
6189--6762	123	4.7	122	89	3	839	25	19	14	40	1.90
6801--6927	36	3.5	36	76	2	128	40	11	18	30	1.85
7623--7679	22	2.6	22	91	0	87	35	14	15	35	1.88
7902--8320	204	2.0	208	85	5	562	32	19	13	33	1.91
8247--8572	54	6.1	53	81	7	354	27	22	12	37	1.90
8252--8572	108	3.0	107	88	5	459	27	22	12	37	1.90
12250--12292	2	21.5	2	100	0	86	48	0	0	51	1.00
13903--13980	36	2.2	36	88	0	111	57	8	14	19	1.63
13945--13984	14	2.9	14	80	0	53	62	10	12	15	1.54
13945--14046	28	3.7	28	69	12	77	57	10	13	17	1.64
14016--14053	14	2.6	15	87	4	51	60	7	15	15	1.57
17526--17602	30	2.6	28	78	15	75	66	5	3	24	1.30
18703--18758	3	19.0	3	85	3	69	60	0	1	37	1.07
18688--18753	15	4.6	15	77	7	66	57	0	1	40	1.08
19696--19747	20	2.6	20	90	0	86	38	25	13	23	1.91
19803--20151	20	17.5	20	84	4	418	35	26	18	19	1.95
23329--23665	19	19.5	19	77	19	373	46	18	20	14	1.84
23357--23633	52	5.2	52	92	5	386	46	17	21	14	1.83
23396--23633	70	3.4	71	84	12	355	46	17	21	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23329--23664	89	3.9	88	86	9	386	46	18	20	14	1.84
23669--23769	19	5.6	19	84	13	142	14	23	17	43	1.87
23875--23911	14	2.6	14	91	0	65	45	21	0	32	1.52
25303--25363	21	3.0	20	73	7	68	19	16	37	26	1.93
25822--25886	18	3.4	19	87	4	87	44	27	15	12	1.82
25877--25933	14	3.7	14	77	20	60	45	22	21	10	1.82
25822--25955	19	7.6	19	74	18	110	45	23	18	11	1.83
25859--25950	33	2.8	33	91	1	150	46	21	19	11	1.82
25951--26079	19	7.3	19	75	17	125	8	17	28	45	1.77
25951--26042	33	2.8	33	93	3	150	7	18	28	45	1.76
26123--26680	92	6.1	93	98	1	1063	46	18	12	21	1.83
28387--28476	14	5.7	14	74	23	81	42	23	25	8	1.83
28379--28493	33	3.5	33	95	0	212	45	20	24	9	1.81
28386--28498	19	6.8	18	72	23	88	43	22	24	9	1.83
28494--28562	31	2.2	33	89	5	106	8	21	26	43	1.81
28682--28752	33	2.2	33	92	0	115	47	18	22	11	1.80
28932--28986	22	2.5	22	81	0	74	20	16	40	23	1.91
29131--29323	20	9.6	20	82	5	219	19	19	25	35	1.95
29131--29323	60	3.2	60	83	0	251	19	19	25	35	1.95
29291--29388	21	4.8	20	73	6	79	22	19	21	36	1.95
29291--29384	42	2.3	41	76	9	93	23	20	22	34	1.97
29379--29428	20	2.5	20	96	0	91	22	14	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29756--29885	62	2.1	62	88	7	201	43	0	2	54	1.13
30405--30464	31	1.9	31	93	0	102	43	10	6	40	1.64
32295--32319	6	4.2	6	100	0	50	20	16	64	0	1.30
32485--32530	12	3.9	12	94	2	76	30	50	8	10	1.68
37003--37030	14	2.0	14	100	0	56	42	0	7	50	1.30
39805--39839	18	1.9	18	94	0	61	62	0	0	37	0.95
40386--40450	34	1.9	34	87	6	96	35	10	20	33	1.87
50946--50984	21	1.9	20	84	5	51	53	2	0	43	1.14
53474--53528	2	28.0	2	96	3	103	49	0	0	50	1.00
65408--65456	2	24.5	2	100	0	98	51	0	0	48	1.00
65543--65575	16	2.0	17	88	5	50	42	18	9	30	1.81
73581--73841	137	1.9	137	91	1	425	40	23	13	21	1.89
78156--78199	2	22.0	2	100	0	88	50	0	0	50	1.00

Tables:   1

The End!