Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008817.1 Hibiscus syriacus cultivar Beakdansim tig00111983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1047399
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 3 of 4
Found at i:584987 original size:96 final size:99
Alignment explanation
Indices: 584866--585060 Score: 369
Period size: 99 Copynumber: 2.0 Consensus size: 99
584856 ATTTTTAGGA
584866 GTTTGAATCCTAGCAAAATGTTATCCTA-TTTTAGGAG-TTGAAT-CTAAAATTCTATCCTATTT
1 GTTTGAATCCTAGCAAAATGTTATCCTATTTTTAGGAGTTTGAATCCTAAAATTCTATCCTATTT
584928 TTAAGAGTTTGAATCCTAGTAGGACGAAAAGGTG
66 TTAAGAGTTTGAATCCTAGTAGGACGAAAAGGTG
584962 GTTTGAATCCTAGCAAAATGTTATCCTATTTTTAGGAGTTTGAATCCTAAAATTCTATCCTATTT
1 GTTTGAATCCTAGCAAAATGTTATCCTATTTTTAGGAGTTTGAATCCTAAAATTCTATCCTATTT
585027 TTAAGAGTTTGAATCCTAGTAGGACGAAAAGGTG
66 TTAAGAGTTTGAATCCTAGTAGGACGAAAAGGTG
585061 TGTTGACATT
Statistics
Matches: 96, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
96 28 0.29
97 9 0.09
98 6 0.06
99 53 0.55
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (99 bp):
GTTTGAATCCTAGCAAAATGTTATCCTATTTTTAGGAGTTTGAATCCTAAAATTCTATCCTATTT
TTAAGAGTTTGAATCCTAGTAGGACGAAAAGGTG
Found at i:586268 original size:34 final size:36
Alignment explanation
Indices: 586225--586322 Score: 164
Period size: 37 Copynumber: 2.8 Consensus size: 36
586215 ATCCTACTAA
586225 GATTCAAACTCCTAAAAATAGGATAGAA-TTT-TAG
1 GATTCAAACTCCTAAAAATAGGATAGAATTTTCTAG
*
586259 GATTCAAACTCCTAAAAATAGGATAAAATTTTGCTAG
1 GATTCAAACTCCTAAAAATAGGATAGAATTTT-CTAG
586296 GATTCAAACTCCTAAAAATAGGATAGA
1 GATTCAAACTCCTAAAAATAGGATAGA
586323 GTTATACTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
34 27 0.46
35 3 0.05
37 29 0.49
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (36 bp):
GATTCAAACTCCTAAAAATAGGATAGAATTTTCTAG
Found at i:586818 original size:23 final size:23
Alignment explanation
Indices: 586790--586837 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
586780 TTTTTTTTAC
* *
586790 TATATTTTTTATTATTATTA-TTA
1 TATATTCTTTAATATT-TTACTTA
586813 TATATTCTTTAATATTTTACTTA
1 TATATTCTTTAATATTTTACTTA
586836 TA
1 TA
586838 AGTCTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (23 bp):
TATATTCTTTAATATTTTACTTA
Found at i:587002 original size:8 final size:8
Alignment explanation
Indices: 586933--587037 Score: 57
Period size: 9 Copynumber: 12.1 Consensus size: 8
586923 AATATATTAA
586933 TATTATTT
1 TATTATTT
*
586941 GATTATTT
1 TATTATTT
*
586949 TATTTATGT
1 TA-TTATTT
* *
586958 AATATATCT
1 TAT-TATTT
* *
586967 TATAACTT
1 TATTATTT
586975 TATATATTT
1 TAT-TATTT
586984 ATATTATTTT
1 -TATTA-TTT
586994 TATTATTT
1 TATTATTT
* *
587002 TCGTTTTTT
1 T-ATTATTT
587011 TATTCATTAT
1 TATT-ATT-T
*
587021 TATTATAT
1 TATTATTT
587029 TATTATTT
1 TATTATTT
587037 T
1 T
587038 TAAAAAAAAA
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
8 29 0.40
9 32 0.44
10 11 0.15
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.66
Consensus pattern (8 bp):
TATTATTT
Found at i:587230 original size:2 final size:2
Alignment explanation
Indices: 587223--587285 Score: 105
Period size: 2 Copynumber: 33.0 Consensus size: 2
587213 TAATACTTTG
587223 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
587265 -T AT AT AT -T AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
587286 TTATTTTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
1 3 0.05
2 55 0.95
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:587341 original size:16 final size:17
Alignment explanation
Indices: 587307--587357 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
587297 CTTTTCAATA
587307 TTACTATATATATTATTAC
1 TTACTAT-TAT-TTATTAC
587326 TTACTATTATTT-TTAC
1 TTACTATTATTTATTAC
*
587342 TTATTATTTATTTATT
1 TTACTA-TTATTTATT
587358 TTATTTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 9 0.31
17 8 0.28
18 5 0.17
19 7 0.24
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTATTATTTATTAC
Found at i:590384 original size:16 final size:15
Alignment explanation
Indices: 590358--590405 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
590348 AGATCCAATC
590358 AAGAACAAAAAAGAA
1 AAGAACAAAAAAGAA
590373 AAGAAGCAAAAAAGAA
1 AAGAA-CAAAAAAGAA
*
590389 AA-AAAAAACAAAGAA
1 AAGAACAAA-AAAGAA
590404 AA
1 AA
590406 AGAGAAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 3 0.10
15 15 0.50
16 12 0.40
ACGTcount: A:0.81, C:0.06, G:0.12, T:0.00
Consensus pattern (15 bp):
AAGAACAAAAAAGAA
Found at i:590393 original size:8 final size:8
Alignment explanation
Indices: 590364--590412 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
590354 AATCAAGAAC
590364 AAAAAAGA
1 AAAAAAGA
* *
590372 AAAGAAGC
1 AAAAAAGA
590380 AAAAAAGA
1 AAAAAAGA
590388 AAAAAA-A
1 AAAAAAGA
*
590395 AACAAAGA
1 AAAAAAGA
*
590403 AAAAGAGA
1 AAAAAAGA
590411 AA
1 AA
590413 CAAGAACAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
7 6 0.18
8 27 0.82
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:590420 original size:22 final size:21
Alignment explanation
Indices: 590381--590422 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
590371 AAAAGAAGCA
590381 AAAAAGAAAAAAAAAACAAAG
1 AAAAAGAAAAAAAAAACAAAG
* *
590402 AAAAAGAGAAACAAGAACAAA
1 AAAAAGA-AAAAAAAAACAAA
590423 AGGAAAGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.81, C:0.07, G:0.12, T:0.00
Consensus pattern (21 bp):
AAAAAGAAAAAAAAAACAAAG
Found at i:590424 original size:23 final size:23
Alignment explanation
Indices: 590381--590440 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
590371 AAAAGAAGCA
590381 AAAAAGA-AAAAAAAAACAAA-G
1 AAAAAGAGAAAAAAAAACAAAGG
* *
590402 AAAAAGAGAAACAAGAACAAAAGG
1 AAAAAGAGAAAAAAAAAC-AAAGG
*
590426 AAAGAAGAGCAAAAA
1 AAA-AAGAGAAAAAA
590441 TCAAAAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 7 0.23
22 8 0.26
23 3 0.10
24 4 0.13
25 9 0.29
ACGTcount: A:0.77, C:0.07, G:0.17, T:0.00
Consensus pattern (23 bp):
AAAAAGAGAAAAAAAAACAAAGG
Found at i:591110 original size:22 final size:22
Alignment explanation
Indices: 591085--591133 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
591075 CCATCAATCT
* *
591085 TTTGAGCATCCAATGTCAAACC
1 TTTGAGCATCAAATGCCAAACC
591107 TTTGAGCATCAAATGCCAAACC
1 TTTGAGCATCAAATGCCAAACC
591129 TTTGA
1 TTTGA
591134 CCAAACACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (22 bp):
TTTGAGCATCAAATGCCAAACC
Found at i:591565 original size:17 final size:18
Alignment explanation
Indices: 591543--591577 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
591533 TTCAACATCA
*
591543 ATATTG-GGCATTTTTGG
1 ATATTGAGGCATCTTTGG
591560 ATATTGAGGCATCTTTGG
1 ATATTGAGGCATCTTTGG
591578 GGATTCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.43
Consensus pattern (18 bp):
ATATTGAGGCATCTTTGG
Found at i:592094 original size:36 final size:36
Alignment explanation
Indices: 592051--592333 Score: 296
Period size: 36 Copynumber: 8.0 Consensus size: 36
592041 ACTATAAGAG
592051 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
592087 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * *
592123 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAA-CAAA
592160 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * * * *
592196 ------ATAT-TTGA-ATATGTTTTCTTTGAAACAAA
1 TTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAACAAA
** * ** * *
592225 TTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAG
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAA
* *
592262 TTTTGTCTCTCTTGAAACAGTTTCTCTTGAAA-AAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
592297 TTTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAA
1 -TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
592334 ACCTTTGAAT
Statistics
Matches: 203, Mismatches: 31, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
28 2 0.01
29 19 0.09
30 2 0.01
35 3 0.01
36 111 0.55
37 66 0.33
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (36 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:592179 original size:73 final size:71
Alignment explanation
Indices: 592052--592333 Score: 290
Period size: 73 Copynumber: 4.0 Consensus size: 71
592042 CTATAAGAGT
* * *
592052 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGA
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
592117 AACAAA
66 AACAAA
592123 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
1 TTT-GTCTATCTTGAGACAGTTTCCCTTGAAA-AAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
592188 GAAACAAA
64 GAAACAAA
* * * * * ** * **
592196 -----ATAT-TTGA-ATATGTTTTCTTTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTG
1 TTTGTCTATCTTGAGACA-GTTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
592254 GAACTAAGT
65 AAAC-AA-A
* * * * *
592263 TTTGTCTCTCTTGAAACAGTTTCTCTTGAAAAAATTTTTGTCTATCTTGAGACAGTTTCCCTTGA
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
592328 AACAAA
66 AACAAA
592334 ACCTTTGAAT
Statistics
Matches: 168, Mismatches: 31, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
65 32 0.19
66 17 0.10
67 3 0.02
71 3 0.02
72 31 0.18
73 80 0.48
74 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (71 bp):
TTTGTCTATCTTGAGACAGTTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
AACAAA
Found at i:592266 original size:102 final size:104
Alignment explanation
Indices: 592044--592333 Score: 277
Period size: 102 Copynumber: 2.7 Consensus size: 104
592034 CGTTTTCACT
* *
592044 ATAAGAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTT
1 ATAA-AGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA-----TATATCTTGAGACAGTT
* *
592109 TCTCTTGAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAA
60 TCTCTTGAAACAAATTCCGTCTACCTTGAGACAGTTTCCCTTGAA
* *
592154 ATAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA-ATAT-TTGA-ATATGTTT-TCT
1 ATAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATATATCTTGAGACA-GTTTCTC-
* **
592215 TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAA
64 TTGAAACAAATTCCGTCTACCTTGAGACAGTTTCCCTT-GAA
* * * *
592257 CT-AAGTTTTGTCTCTCTTGAAACAGTTTCTCTTGAAA-AAATTTTTGTCTATCTTGAGACAGTT
1 ATAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA------TATATCTTGAGACAGTT
*
592320 TCCCTTGAAACAAA
60 TCTCTTGAAACAAA
592334 ACCTTTGAAT
Statistics
Matches: 151, Mismatches: 16, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
101 7 0.05
102 73 0.48
103 6 0.04
108 3 0.02
109 55 0.36
110 7 0.05
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (104 bp):
ATAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATATATCTTGAGACAGTTTCTCTT
GAAACAAATTCCGTCTACCTTGAGACAGTTTCCCTTGAA
Found at i:592302 original size:138 final size:138
Alignment explanation
Indices: 592077--592396 Score: 399
Period size: 138 Copynumber: 2.3 Consensus size: 138
592067 ACAGTTTCCC
** * *
592077 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTTGAGACA
1 TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTTGAAACA
* *
592142 GTTTCCCTTGAAATAAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATA
66 GTTTCCCTTGAAATAAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTTGAATA
592207 TGTTTTCT
131 TGTTTTCT
* * * * *
592215 TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAAAC
1 TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCGTCTATCTTGAAAC
* * *
592280 AGTTTCTCTTGAAA-AAATTTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACCTTTGAAT
65 AGTTTCCCTTGAAATAAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTTGAAT
* * * *
592344 TTATTTCCC
130 ATGTTTTCT
* * *** * *
592353 CTAAAACAAATTTTTTCTCCCTTGAGACAATTACTCTTGAAACA
1 TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTCTTGAAACA
592397 CAAAATCTTC
Statistics
Matches: 154, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
137 1 0.01
138 123 0.80
139 30 0.19
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.39
Consensus pattern (138 bp):
TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTTGAAACA
GTTTCCCTTGAAATAAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTTGAATA
TGTTTTCT
Found at i:593536 original size:100 final size:101
Alignment explanation
Indices: 593353--594038 Score: 991
Period size: 100 Copynumber: 6.7 Consensus size: 101
593343 CTTGTCAAAC
593353 CCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
1 CCGCTGCTTGTCAACAA-AA-TTT-CAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATT
593418 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
62 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
*
593458 CCGCTGCTTGTCAACAAAATTTC-ATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
1 CCGCTGCTTGTCAACAAAATTTCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
*
593522 TCCAGACAATGCAAGTTCAACTTCACGACGAAGGGA
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
*
593558 CCGCTGCTTGTCAACAGCAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
1 CCGCTGCTTGTCAACA--AAATTT-CAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATT
593623 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
62 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
*
593663 CCGCTGCTTGTCAACAAAATTTC-ATTCAGAGCCAATTTCAACTTCACAACGAATGATATTGGAC
1 CCGCTGCTTGTCAACAAAATTTCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
* *
593727 TCCAGACAATGCAAGTTCAACTTCACGATGAAGGGA
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
** * * *
593763 CCGCTATTTGTCAACAACAACTTCCCAATCCCAGAGCCAATTTCAACTTCACAACGAAAGATATT
1 CCGCTGCTTGTCAACAA-AA-TT-TCAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATT
593828 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
62 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
** *
593868 CCGCTGCTTGTCAACAAAATTTC-ATTCAGATTCAATTTCAACTTCACAACGAAGAATATTGGAC
1 CCGCTGCTTGTCAACAAAATTTCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
* * *
593932 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGA
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
* * ** * *
593968 CGGCTGGTTGTCAACAAATAATTTCCCGGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATAT
1 CCGCTGCTTGTCAAC-AA-AATTT--CAATT-CAGAGCCAATTTCAACTTCACAACGAAGGATAT
594033 TGGACT
61 TGGACT
594039 TGGAACAATG
Statistics
Matches: 530, Mismatches: 35, Indels: 31
0.89 0.06 0.05
Matches are distributed among these distances:
100 256 0.48
101 10 0.02
102 15 0.03
103 12 0.02
104 9 0.02
105 194 0.37
106 34 0.06
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (101 bp):
CCGCTGCTTGTCAACAAAATTTCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
Found at i:593705 original size:205 final size:205
Alignment explanation
Indices: 593353--594038 Score: 1124
Period size: 205 Copynumber: 3.3 Consensus size: 205
593343 CTTGTCAAAC
593353 CCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
1 CCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
593418 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
66 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
*
593483 TCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCAC
131 TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCAC
593548 GACGAAGGGA
196 GACGAAGGGA
*
593558 CCGCTGCTTGTCAACAGCAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
1 CCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
593623 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
66 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
*
593688 TCAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAGACAATGCAAGTTCAACTTCAC
131 TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCAC
*
593753 GATGAAGGGA
196 GACGAAGGGA
** * * *
593763 CCGCTATTTGTCAACAACAACTTCCCAATCCCAGAGCCAATTTCAACTTCACAACGAAAGATATT
1 CCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
593828 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
66 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
** * * **
593893 TCAGATTCAATTTCAACTTCACAACGAAGAATATTGGACTCGAGACAACACAAGTTCAACTTCAC
131 TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCAC
*
593958 AACGAAGGGA
196 GACGAAGGGA
* * * ** * *
593968 CGGCTGGTTGTCAACAA-ATAATTTCCCGGT-TCCAGAGCCAATTTCAACTTCACGACGGAGGAT
1 CCGCTGCTTGTCAACAACA-ACTTT-CCAATCT-CAGAGCCAATTTCAACTTCACAACGAAGGAT
594031 ATTGGACT
63 ATTGGACT
594039 TGGAACAATG
Statistics
Matches: 448, Mismatches: 30, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
204 1 0.00
205 408 0.91
206 39 0.09
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (205 bp):
CCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAAATTTCAT
TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCAC
GACGAAGGGA
Found at i:594625 original size:34 final size:36
Alignment explanation
Indices: 594585--594686 Score: 172
Period size: 34 Copynumber: 2.9 Consensus size: 36
594575 TTTCGTCCTA
594585 CTAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
594620 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
594655 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
594687 GTTATACTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
34 30 0.48
35 3 0.05
37 29 0.47
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:599507 original size:184 final size:188
Alignment explanation
Indices: 599198--599572 Score: 704
Period size: 184 Copynumber: 2.0 Consensus size: 188
599188 ATATAACTCC
599198 AAATTTCGTACCAACAATCAATTTGTCTAGTAGAATGATGTACTAGTTCTCTTAAACAAAATCTG
1 AAATTTCGTACCAACAATCAATTTGTCTAGTAGAATGATGTACTAGTTCTCTTAAACAAAATCTG
599263 GAATTTGAACCCTGATGTTTTAAAAAATAACATTAGAAGAATTAATTCTAATTTTATATCA-TTT
66 GAATTTGAACCCTGATGTTTTAAAAAATAACATTAGAAGAATTAATTCTAATTTTATATCATTTT
599327 ATAA-TTTATTATATTTCTACATTTGTTCAATAAAACTC-A-ATTATCAATTACAAGG
131 ATAATTTTATTATATTTCTACATTTGTTCAATAAAACTCAATATTATCAATTACAAGG
599382 AAATTTCGTACCAACAATCAATTTGTCTAGTAGAATGATGTACTAGTTCTCTTAAACAAAATCTG
1 AAATTTCGTACCAACAATCAATTTGTCTAGTAGAATGATGTACTAGTTCTCTTAAACAAAATCTG
599447 GAATTTGAACCCTGATGTTTTAAAAAATAACATTAGAAGAATTAATTCTAATTTTATATCATTTT
66 GAATTTGAACCCTGATGTTTTAAAAAATAACATTAGAAGAATTAATTCTAATTTTATATCA-TTT
599512 TATAATTTTATTATATTTCTACATTTGTTCAATAAAACTCAATTATTATCAATTACAAGG
130 TATAATTTTATTATATTTCTACATTTGTTCAATAAAACTCAA-TATTATCAATTACAAGG
599572 A
1 A
599573 TGAGTCTAGA
Statistics
Matches: 185, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
184 126 0.68
186 7 0.04
187 34 0.18
188 1 0.01
190 17 0.09
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (188 bp):
AAATTTCGTACCAACAATCAATTTGTCTAGTAGAATGATGTACTAGTTCTCTTAAACAAAATCTG
GAATTTGAACCCTGATGTTTTAAAAAATAACATTAGAAGAATTAATTCTAATTTTATATCATTTT
ATAATTTTATTATATTTCTACATTTGTTCAATAAAACTCAATATTATCAATTACAAGG
Found at i:607744 original size:19 final size:19
Alignment explanation
Indices: 607712--607750 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
607702 TTAGTTCATG
607712 TAAAAATAAATATTTAAATA
1 TAAAAATAAATA-TTAAATA
*
607732 TAAAAA-AATTATTAAATA
1 TAAAAATAAATATTAAATA
607750 T
1 T
607751 TTAATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAAATAAATATTAAATA
Found at i:613653 original size:6 final size:6
Alignment explanation
Indices: 613642--613675 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
613632 ACAATGGTTG
613642 AGGGTC AGGGTC AGGGTC AGGGTC AGGGTC AGGG
1 AGGGTC AGGGTC AGGGTC AGGGTC AGGGTC AGGG
613676 AGAAGAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.15, G:0.53, T:0.15
Consensus pattern (6 bp):
AGGGTC
Found at i:620080 original size:2 final size:2
Alignment explanation
Indices: 620073--620110 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
620063 AGTAATGATA
620073 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
620111 TTCTGATCTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:621460 original size:29 final size:30
Alignment explanation
Indices: 621405--621461 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
621395 GTTTATGGAT
* *
621405 AAATTTATTAAATTATTTTAAATTTAGACC
1 AAATTAATTAAATTATTGTAAATTTAGACC
621435 AAATTAATT-AATTA-TGTAAATCTTAGA
1 AAATTAATTAAATTATTGTAAAT-TTAGA
621462 GATTAAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.25
29 10 0.42
30 8 0.33
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (30 bp):
AAATTAATTAAATTATTGTAAATTTAGACC
Found at i:627848 original size:20 final size:21
Alignment explanation
Indices: 627811--627850 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
627801 ATATATGTAT
627811 TATAAATAACTAAGGAAAAAC
1 TATAAATAACTAAGGAAAAAC
*
627832 TATAAATAA-TTAGGAAAAA
1 TATAAATAACTAAGGAAAAA
627851 TCAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (21 bp):
TATAAATAACTAAGGAAAAAC
Found at i:637142 original size:168 final size:171
Alignment explanation
Indices: 636814--637152 Score: 648
Period size: 168 Copynumber: 2.0 Consensus size: 171
636804 TATTTGAATG
636814 AAAACATATAACTAAGAGTTACCAATTACATCTAATCCAAAAAAAATTATACCTAATTACACCCT
1 AAAACATATAACTAAGAGTTACCAATTACATCTAATCCAAAAAAAATTATACCTAATTACACCCT
636879 AATCTAATTATATGACCATTTTTTAAATGAAATTTAAAATTAACATTTTTTTTTACTATGGAAAC
66 AATCTAATTATATGACCATTTTTTAAATGAAATTTAAAATTAACA-TTTTTTTTACTATGGAAAC
636944 TTTGTTCTCAGCTTTTCAAATGAATTATTTGGTCAAATAATA
130 TTTGTTCTCAGCTTTTCAAATGAATTATTTGGTCAAATAATA
636986 AAAACATATAACTAAGAGTTACCAATTACATCTAATCC-AAAAAAATTATACCTAATTACACCCT
1 AAAACATATAACTAAGAGTTACCAATTACATCTAATCCAAAAAAAATTATACCTAATTACACCCT
637050 AATCTAATTATATGACCA-TTTTTAAATGAAATTTAAAATTAACA-TTTTTTTACTATGGAAACT
66 AATCTAATTATATGACCATTTTTTAAATGAAATTTAAAATTAACATTTTTTTTACTATGGAAACT
637113 TTGTTCTCAGCTTTTCAAATGAATTATTTGGTCAAATAAT
131 TTGTTCTCAGCTTTTCAAATGAATTATTTGGTCAAATAAT
637153 GTTTTTAATC
Statistics
Matches: 167, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
168 59 0.35
170 26 0.16
171 44 0.26
172 38 0.23
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.37
Consensus pattern (171 bp):
AAAACATATAACTAAGAGTTACCAATTACATCTAATCCAAAAAAAATTATACCTAATTACACCCT
AATCTAATTATATGACCATTTTTTAAATGAAATTTAAAATTAACATTTTTTTTACTATGGAAACT
TTGTTCTCAGCTTTTCAAATGAATTATTTGGTCAAATAATA
Found at i:651509 original size:11 final size:11
Alignment explanation
Indices: 651478--651536 Score: 90
Period size: 11 Copynumber: 5.7 Consensus size: 11
651468 GTTGGAAACT
651478 GGTTTTG-ACC
1 GGTTTTGAACC
651488 GG-TTT-AACC
1 GGTTTTGAACC
651497 GGTTTTGAACC
1 GGTTTTGAACC
651508 GGTTTTG-ACC
1 GGTTTTGAACC
651518 GGTTTTGAACC
1 GGTTTTGAACC
651529 GGTTTTGA
1 GGTTTTGA
651537 CCAGTTTGAC
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
9 8 0.18
10 15 0.33
11 22 0.49
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (11 bp):
GGTTTTGAACC
Found at i:651514 original size:30 final size:30
Alignment explanation
Indices: 651478--651550 Score: 105
Period size: 30 Copynumber: 2.4 Consensus size: 30
651468 GTTGGAAACT
651478 GGTTTTGACCGGTTT-AACCGGTTTTGAACC
1 GGTTTTGACCGGTTTGAACCGGTTTTG-ACC
651508 GGTTTTGACCGGTTTTGAACCGGTTTTGACC
1 GGTTTTGACCGG-TTTGAACCGGTTTTGACC
*
651539 AG-TTTGACCGGT
1 GGTTTTGACCGGT
651551 CACTACCCGT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
29 1 0.03
30 21 0.52
31 7 0.17
32 11 0.28
ACGTcount: A:0.15, C:0.19, G:0.29, T:0.37
Consensus pattern (30 bp):
GGTTTTGACCGGTTTGAACCGGTTTTGACC
Found at i:651520 original size:21 final size:20
Alignment explanation
Indices: 651478--651550 Score: 96
Period size: 21 Copynumber: 3.6 Consensus size: 20
651468 GTTGGAAACT
*
651478 GGTTTTGACCGG-TTTAACC
1 GGTTTTGACCGGTTTTGACC
651497 GGTTTTGAACCGGTTTTGACC
1 GGTTTTG-ACCGGTTTTGACC
651518 GGTTTTGAACCGGTTTTGACC
1 GGTTTTG-ACCGGTTTTGACC
*
651539 AG-TTTGACCGGT
1 GGTTTTGACCGGT
651551 CACTACCCGT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.26
20 9 0.18
21 28 0.56
ACGTcount: A:0.15, C:0.19, G:0.29, T:0.37
Consensus pattern (20 bp):
GGTTTTGACCGGTTTTGACC
Found at i:651576 original size:36 final size:36
Alignment explanation
Indices: 651535--651607 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
651525 AACCGGTTTT
* * *
651535 GACCAGTTTGACCGGTCACTACCCGTTTA-CCGACCC
1 GACCAGTTT-ACCCGACACGACCCGTTTACCCGACCC
*
651571 GACCAGTTTACCCGACCCGACCCGTTTACCCGACCC
1 GACCAGTTTACCCGACACGACCCGTTTACCCGACCC
651607 G
1 G
651608 TTGACCGTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 15 0.47
36 17 0.53
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.19
Consensus pattern (36 bp):
GACCAGTTTACCCGACACGACCCGTTTACCCGACCC
Found at i:651585 original size:18 final size:18
Alignment explanation
Indices: 651559--651607 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
651549 GTCACTACCC
651559 GTTTA-CCGACCCGACCA
1 GTTTACCCGACCCGACCA
*
651576 GTTTACCCGACCCGACCC
1 GTTTACCCGACCCGACCA
651594 GTTTACCCGACCCG
1 GTTTACCCGACCCG
651608 TTGACCGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.18, C:0.45, G:0.18, T:0.18
Consensus pattern (18 bp):
GTTTACCCGACCCGACCA
Found at i:651601 original size:13 final size:13
Alignment explanation
Indices: 651585--651609 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
651575 AGTTTACCCG
651585 ACCCGACCCGTTT
1 ACCCGACCCGTTT
651598 ACCCGACCCGTT
1 ACCCGACCCGTT
651610 GACCGTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
ACCCGACCCGTTT
Found at i:651689 original size:29 final size:29
Alignment explanation
Indices: 651628--651694 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
651618 ACCGTTGACC
* ** *
651628 GGTGCTATTCTGGGAATTAATTCAGTTTT
1 GGTGCTATTCTGAGAATTAATTCAGAATG
651657 GGTGCTATTCTGAGAATTAATTC-GAAATG
1 GGTGCTATTCTGAGAATTAATTCAG-AATG
651686 GGTGCTATT
1 GGTGCTATT
651695 TTAGTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 1 0.03
29 32 0.97
ACGTcount: A:0.24, C:0.10, G:0.25, T:0.40
Consensus pattern (29 bp):
GGTGCTATTCTGAGAATTAATTCAGAATG
Found at i:651703 original size:29 final size:28
Alignment explanation
Indices: 651657--651711 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
651647 ATTCAGTTTT
651657 GGTGCTATTCTGAGAATTAATTCGAAATG
1 GGTGCTATTCTGAGAATT-ATTCGAAATG
* *
651686 GGTGCTATT-TTAGTAATTTTTCGAAA
1 GGTGCTATTCTGAG-AATTATTCGAAA
651712 AAAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (28 bp):
GGTGCTATTCTGAGAATTATTCGAAATG
Found at i:660955 original size:10 final size:10
Alignment explanation
Indices: 660913--660964 Score: 72
Period size: 9 Copynumber: 5.3 Consensus size: 10
660903 GTTGGAAACT
660913 GGTTTTGACC
1 GGTTTTGACC
*
660923 GG-TTTAACC
1 GGTTTTGACC
660932 GGTTTTGAACC
1 GGTTTTG-ACC
660943 GGTTTTGACC
1 GGTTTTGACC
660953 GG-TTTGACC
1 GGTTTTGACC
660962 GGT
1 GGT
660965 CACAACCCGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
9 17 0.46
10 10 0.27
11 10 0.27
ACGTcount: A:0.13, C:0.19, G:0.31, T:0.37
Consensus pattern (10 bp):
GGTTTTGACC
Found at i:661004 original size:18 final size:18
Alignment explanation
Indices: 660981--661030 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
660971 CCGTTTACCC
660981 GTTTACCCGACCCGACCA
1 GTTTACCCGACCCGACCA
*
660999 GTTTACCCGACCCGACCC
1 GTTTACCCGACCCGACCA
661017 GTTTACCCGACCCG
1 GTTTACCCGACCCG
661031 TTGACCGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.18, C:0.46, G:0.18, T:0.18
Consensus pattern (18 bp):
GTTTACCCGACCCGACCA
Found at i:661024 original size:13 final size:13
Alignment explanation
Indices: 661008--661032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
660998 AGTTTACCCG
661008 ACCCGACCCGTTT
1 ACCCGACCCGTTT
661021 ACCCGACCCGTT
1 ACCCGACCCGTT
661033 GACCGTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
ACCCGACCCGTTT
Found at i:661112 original size:29 final size:29
Alignment explanation
Indices: 661051--661117 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
661041 ACCGTTGACC
* *** *
661051 GGTGCTATTCTGGGAATTAATTCGGTCTT
1 GGTGCTATTCTGAGAATTAATTCGAAATG
661080 GGTGCTATTCTGAGAATTAATTCGAAATG
1 GGTGCTATTCTGAGAATTAATTCGAAATG
661109 GGTGCTATT
1 GGTGCTATT
661118 TTAAAAAGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.39
Consensus pattern (29 bp):
GGTGCTATTCTGAGAATTAATTCGAAATG
Found at i:661875 original size:10 final size:10
Alignment explanation
Indices: 661833--661884 Score: 72
Period size: 9 Copynumber: 5.3 Consensus size: 10
661823 GTTGGAAACT
661833 GGTTTTGACC
1 GGTTTTGACC
*
661843 GG-TTTAACC
1 GGTTTTGACC
661852 GGTTTTGAACC
1 GGTTTTG-ACC
661863 GGTTTTGACC
1 GGTTTTGACC
661873 GG-TTTGACC
1 GGTTTTGACC
661882 GGT
1 GGT
661885 CACGACCCGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
9 17 0.46
10 10 0.27
11 10 0.27
ACGTcount: A:0.13, C:0.19, G:0.31, T:0.37
Consensus pattern (10 bp):
GGTTTTGACC
Found at i:661924 original size:18 final size:18
Alignment explanation
Indices: 661901--661950 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
661891 CCGTTTACCC
661901 GTTTACCCGACCCGACCA
1 GTTTACCCGACCCGACCA
*
661919 GTTTACCCGACCCGACCC
1 GTTTACCCGACCCGACCA
661937 GTTTACCCGACCCG
1 GTTTACCCGACCCG
661951 TTGACCGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.18, C:0.46, G:0.18, T:0.18
Consensus pattern (18 bp):
GTTTACCCGACCCGACCA
Found at i:661944 original size:13 final size:13
Alignment explanation
Indices: 661928--661952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
661918 AGTTTACCCG
661928 ACCCGACCCGTTT
1 ACCCGACCCGTTT
661941 ACCCGACCCGTT
1 ACCCGACCCGTT
661953 GACCGTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
ACCCGACCCGTTT
Found at i:661989 original size:920 final size:920
Alignment explanation
Indices: 660209--662040 Score: 3628
Period size: 920 Copynumber: 2.0 Consensus size: 920
660199 ATATAATTGT
660209 AATTTGGGGTTTTAATTAAGTTAATTAGTGAAATTTGAGGATTTAATTGGAAGTTTTTAAAACTT
1 AATTTGGGGTTTTAATTAAGTTAATTAGTGAAATTTGAGGATTTAATTGGAAGTTTTTAAAACTT
660274 GTAGCATGTTTTAAAAAGTGGAGGAAATTCAGTGACCAATCACTGAATAATGCCAAGGAGTGTCG
66 GTAGCATGTTTTAAAAAGTGGAGGAAATTCAGTGACCAATCACTGAATAATGCCAAGGAGTGTCG
660339 GCAGATTGTTCTTCTTCTTATATGCGTGCAAATTGATTCTGGTTTCATACCAGAACAATTTGCTA
131 GCAGATTGTTCTTCTTCTTATATGCGTGCAAATTGATTCTGGTTTCATACCAGAACAATTTGCTA
660404 AGTTTTTACCCCCACGCATCTCAACTTTCAACCACGATCCTGACGTCGTCCGACCTCCGATCATT
196 AGTTTTTACCCCCACGCATCTCAACTTTCAACCACGATCCTGACGTCGTCCGACCTCCGATCATT
660469 GTTTTGAAAACACCATCGTGTTCATCATCGAGCGAGGAACAAATCCCTTAGATTAATTGAAGCGA
261 GTTTTGAAAACACCATCGTGTTCATCATCGAGCGAGGAACAAATCCCTTAGATTAATTGAAGCGA
660534 AACGCTGCCAAACGCCGGGAATTTCCAGTCAAAGTCTCGATGTATTTTTTTAGCTAAATCGCCGA
326 AACGCTGCCAAACGCCGGGAATTTCCAGTCAAAGTCTCGATGTATTTTTTTAGCTAAATCGCCGA
660599 GAAAATCTTAAATTCATCGCTGATCGTTGCTCCGTTTACGACACCTCCCGCACCATCGCGTTCCT
391 GAAAATCTTAAATTCATCGCTGATCGTTGCTCCGTTTACGACACCTCCCGCACCATCGCGTTCCT
660664 TGTGCCGTTCCGAGTCCGCCGGTGTCATCCTCGATCTCCGTTGACGGCGGCGCGTGGGGAGGTGG
456 TGTGCCGTTCCGAGTCCGCCGGTGTCATCCTCGATCTCCGTTGACGGCGGCGCGTGGGGAGGTGG
660729 ATCAGTCAAAGATTCGGCCGAGTCGAAATCGAGCTCTCCGCCGTTCAAAAATTTGAACCGATCTT
521 ATCAGTCAAAGATTCGGCCGAGTCGAAATCGAGCTCTCCGCCGTTCAAAAATTTGAACCGATCTT
660794 TGTAAGTATCTCGAAATCGCTCAAAATAATTTTTAGAAATTTTTCCGTGATTTTTAGAGCCCCGG
586 TGTAAGTATCTCGAAATCGCTCAAAATAATTTTTAGAAATTTTTCCGTGATTTTTAGAGCCCCGG
660859 AGGACGTCGCACGCGCCCACACGCGCCGCCGCAGGCGAGTGAACGTTGGAAACTGGTTTTGACCG
651 AGGACGTCGCACGCGCCCACACGCGCCGCCGCAGGCGAGTGAACGTTGGAAACTGGTTTTGACCG
660924 GTTTAACCGGTTTTGAACCGGTTTTGACCGGTTTGACCGGTCACAACCCGTTTACCCGTTTACCC
716 GTTTAACCGGTTTTGAACCGGTTTTGACCGGTTTGACCGGTCACAACCCGTTTACCCGTTTACCC
660989 GACCCGACCAGTTTACCCGACCCGACCCGTTTACCCGACCCGTTGACCGTTGACCGTTGACCGGT
781 GACCCGACCAGTTTACCCGACCCGACCCGTTTACCCGACCCGTTGACCGTTGACCGTTGACCGGT
*
661054 GCTATTCTGGGAATTAATTCGGTCTTGGTGCTATTCTGAGAATTAATTCGAAATGGGTGCTATTT
846 GCTATTCTGGGAATTAATTCGGTCTTGGTGCTATTATGAGAATTAATTCGAAATGGGTGCTATTT
661119 TAAAAAGTGA
911 TAAAAAGTGA
661129 AATTTGGGGTTTTAATTAAGTTAATTAGTGAAATTTGAGGATTTAATTGGAAGTTTTTAAAACTT
1 AATTTGGGGTTTTAATTAAGTTAATTAGTGAAATTTGAGGATTTAATTGGAAGTTTTTAAAACTT
661194 GTAGCATGTTTTAAAAAGTGGAGGAAATTCAGTGACCAATCACTGAATAATGCCAAGGAGTGTCG
66 GTAGCATGTTTTAAAAAGTGGAGGAAATTCAGTGACCAATCACTGAATAATGCCAAGGAGTGTCG
661259 GCAGATTGTTCTTCTTCTTATATGCGTGCAAATTGATTCTGGTTTCATACCAGAACAATTTGCTA
131 GCAGATTGTTCTTCTTCTTATATGCGTGCAAATTGATTCTGGTTTCATACCAGAACAATTTGCTA
*
661324 AGTTTTTATCCCCACGCATCTCAACTTTCAACCACGATCCTGACGTCGTCCGACCTCCGATCATT
196 AGTTTTTACCCCCACGCATCTCAACTTTCAACCACGATCCTGACGTCGTCCGACCTCCGATCATT
661389 GTTTTGAAAACACCATCGTGTTCATCATCGAGCGAGGAACAAATCCCTTAGATTAATTGAAGCGA
261 GTTTTGAAAACACCATCGTGTTCATCATCGAGCGAGGAACAAATCCCTTAGATTAATTGAAGCGA
661454 AACGCTGCCAAACGCCGGGAATTTCCAGTCAAAGTCTCGATGTATTTTTTTAGCTAAATCGCCGA
326 AACGCTGCCAAACGCCGGGAATTTCCAGTCAAAGTCTCGATGTATTTTTTTAGCTAAATCGCCGA
661519 GAAAATCTTAAATTCATCGCTGATCGTTGCTCCGTTTACGACACCTCCCGCACCATCGCGTTCCT
391 GAAAATCTTAAATTCATCGCTGATCGTTGCTCCGTTTACGACACCTCCCGCACCATCGCGTTCCT
661584 TGTGCCGTTCCGAGTCCGCCGGTGTCATCCTCGATCTCCGTTGACGGCGGCGCGTGGGGAGGTGG
456 TGTGCCGTTCCGAGTCCGCCGGTGTCATCCTCGATCTCCGTTGACGGCGGCGCGTGGGGAGGTGG
661649 ATCAGTCAAAGATTCGGCCGAGTCGAAATCGAGCTCTCCGCCGTTCAAAAATTTGAACCGATCTT
521 ATCAGTCAAAGATTCGGCCGAGTCGAAATCGAGCTCTCCGCCGTTCAAAAATTTGAACCGATCTT
661714 TGTAAGTATCTCGAAATCGCTCAAAATAATTTTTAGAAATTTTTCCGTGATTTTTAGAGCCCCGG
586 TGTAAGTATCTCGAAATCGCTCAAAATAATTTTTAGAAATTTTTCCGTGATTTTTAGAGCCCCGG
661779 AGGACGTCGCACGCGCCCACACGCGCCGCCGCAGGCGAGTGAACGTTGGAAACTGGTTTTGACCG
651 AGGACGTCGCACGCGCCCACACGCGCCGCCGCAGGCGAGTGAACGTTGGAAACTGGTTTTGACCG
*
661844 GTTTAACCGGTTTTGAACCGGTTTTGACCGGTTTGACCGGTCACGACCCGTTTACCCGTTTACCC
716 GTTTAACCGGTTTTGAACCGGTTTTGACCGGTTTGACCGGTCACAACCCGTTTACCCGTTTACCC
661909 GACCCGACCAGTTTACCCGACCCGACCCGTTTACCCGACCCGTTGACCGTTGACCGTTGACCGGT
781 GACCCGACCAGTTTACCCGACCCGACCCGTTTACCCGACCCGTTGACCGTTGACCGTTGACCGGT
*
661974 GCTATTCTGGGAATTAATTCGGTTTTGGTGCTATTATGAGAATTAATTCGAAATGGGTGCTATTT
846 GCTATTCTGGGAATTAATTCGGTCTTGGTGCTATTATGAGAATTAATTCGAAATGGGTGCTATTT
662039 TA
911 TA
662041 GTAATTTTTC
Statistics
Matches: 908, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
920 908 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (920 bp):
AATTTGGGGTTTTAATTAAGTTAATTAGTGAAATTTGAGGATTTAATTGGAAGTTTTTAAAACTT
GTAGCATGTTTTAAAAAGTGGAGGAAATTCAGTGACCAATCACTGAATAATGCCAAGGAGTGTCG
GCAGATTGTTCTTCTTCTTATATGCGTGCAAATTGATTCTGGTTTCATACCAGAACAATTTGCTA
AGTTTTTACCCCCACGCATCTCAACTTTCAACCACGATCCTGACGTCGTCCGACCTCCGATCATT
GTTTTGAAAACACCATCGTGTTCATCATCGAGCGAGGAACAAATCCCTTAGATTAATTGAAGCGA
AACGCTGCCAAACGCCGGGAATTTCCAGTCAAAGTCTCGATGTATTTTTTTAGCTAAATCGCCGA
GAAAATCTTAAATTCATCGCTGATCGTTGCTCCGTTTACGACACCTCCCGCACCATCGCGTTCCT
TGTGCCGTTCCGAGTCCGCCGGTGTCATCCTCGATCTCCGTTGACGGCGGCGCGTGGGGAGGTGG
ATCAGTCAAAGATTCGGCCGAGTCGAAATCGAGCTCTCCGCCGTTCAAAAATTTGAACCGATCTT
TGTAAGTATCTCGAAATCGCTCAAAATAATTTTTAGAAATTTTTCCGTGATTTTTAGAGCCCCGG
AGGACGTCGCACGCGCCCACACGCGCCGCCGCAGGCGAGTGAACGTTGGAAACTGGTTTTGACCG
GTTTAACCGGTTTTGAACCGGTTTTGACCGGTTTGACCGGTCACAACCCGTTTACCCGTTTACCC
GACCCGACCAGTTTACCCGACCCGACCCGTTTACCCGACCCGTTGACCGTTGACCGTTGACCGGT
GCTATTCTGGGAATTAATTCGGTCTTGGTGCTATTATGAGAATTAATTCGAAATGGGTGCTATTT
TAAAAAGTGA
Found at i:662032 original size:29 final size:29
Alignment explanation
Indices: 661971--662037 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
661961 ACCGTTGACC
* * *** *
661971 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTATGAGAATTAATTCGAAATG
662000 GGTGCTATTATGAGAATTAATTCGAAATG
1 GGTGCTATTATGAGAATTAATTCGAAATG
662029 GGTGCTATT
1 GGTGCTATT
662038 TTAGTAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.40
Consensus pattern (29 bp):
GGTGCTATTATGAGAATTAATTCGAAATG
Found at i:662046 original size:29 final size:28
Alignment explanation
Indices: 662000--662054 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
661990 ATTCGGTTTT
662000 GGTGCTATTATGAGAATTAATTCGAAATG
1 GGTGCTATTATGAGAATT-ATTCGAAATG
* *
662029 GGTGCTATT-TTAGTAATTTTTCGAAA
1 GGTGCTATTATGAG-AATTATTCGAAA
662055 AAAATAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (28 bp):
GGTGCTATTATGAGAATTATTCGAAATG
Found at i:665486 original size:53 final size:53
Alignment explanation
Indices: 665405--665507 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
665395 CCTCGAAACC
* *
665405 ATATACGAAACATTATTATGTGATGCGTCATGTCAATATAAAATAATTAAATT
1 ATATACGAAACATTATTATGTAACGCGTCATGTCAATATAAAATAATTAAATT
* *
665458 ATATATGACACATTATTATGTAACGCGTCATGTCAATATAAAATAATTAA
1 ATATACGAAACATTATTATGTAACGCGTCATGTCAATATAAAATAATTAA
665508 TTGAAAATCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (53 bp):
ATATACGAAACATTATTATGTAACGCGTCATGTCAATATAAAATAATTAAATT
Found at i:665870 original size:21 final size:21
Alignment explanation
Indices: 665846--665933 Score: 90
Period size: 21 Copynumber: 4.2 Consensus size: 21
665836 GCGTTGCATT
*
665846 TCGCGTTACGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
**
665867 TCGCGTTGCGATAGTCT-ACAGT
1 TCGCGTTGCGATAGT-TGA-AAA
**
665889 TATCGTTGCGATAGTTG-AAA
1 TCGCGTTGCGATAGTTGAAAA
*
665909 TCGCGTTGCGATAGTTGCAAA
1 TCGCGTTGCGATAGTTGAAAA
665930 TCGC
1 TCGC
665934 AATGCGATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
20 16 0.30
21 23 0.43
22 15 0.28
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:665939 original size:21 final size:20
Alignment explanation
Indices: 665895--665941 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
665885 CAGTTATCGT
**
665895 TGCGATAGTTGAAATCGCGT
1 TGCGATAGTTGAAATCGCAA
665915 TGCGATAGTTGCAAATCGCAA
1 TGCGATAGTTG-AAATCGCAA
665936 TGCGAT
1 TGCGAT
665942 TTTCCATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (20 bp):
TGCGATAGTTGAAATCGCAA
Found at i:666093 original size:6 final size:6
Alignment explanation
Indices: 666082--666112 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
666072 GACACGTATT
666082 ACCACG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG A
666113 GACGGACGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:666606 original size:6 final size:6
Alignment explanation
Indices: 666597--666623 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
666587 GTCTGTCTCG
666597 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
666624 AATACGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:666750 original size:22 final size:22
Alignment explanation
Indices: 666723--666775 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
666713 AATTTGGAAA
666723 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
*
666745 ATCGCAACAACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
*
666767 ATAGCAACG
1 ATCGCAACG
666776 CGAAATGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:666991 original size:21 final size:21
Alignment explanation
Indices: 666764--666991 Score: 124
Period size: 21 Copynumber: 11.1 Consensus size: 21
666754 ACAACTGTAG
* *
666764 ACTATAGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
666785 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
666805 ACTATCGCAACGCGAAATG-G
1 ACTATCGCAACGCGAAATGCA
* *** ** *
666825 ACAATCGCGTTGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
* *
666846 ACTATAGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** **
666867 A-AATCGCAACGCGATTTTTA
1 ACTATCGCAACGCGAAATGCA
* *
666887 ACTATCGCAACACGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
666908 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
666928 ACTATCGCAACGCGAAATG-A
1 ACTATCGCAACGCGAAATGCA
** ** *
666948 AAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
666969 ACTATCTCAACGCGAAATGCA
1 ACTATCGCAACGCGAAATGCA
666990 AC
1 AC
666992 GCGAATTTGC
Statistics
Matches: 141, Mismatches: 61, Indels: 10
0.67 0.29 0.05
Matches are distributed among these distances:
20 69 0.49
21 72 0.51
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATGCA
Found at i:667004 original size:41 final size:41
Alignment explanation
Indices: 666764--666987 Score: 358
Period size: 41 Copynumber: 5.5 Consensus size: 41
666754 ACAACTGTAG
*
666764 ACTATAGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
* ***
666805 ACTATCGCAACGCGAAATGGACAATCGCGTTGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
* *
666846 ACTATAGCAACGCGAAATGGAAAATCGCAACGCGATTTTTA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
*
666887 ACTATCGCAACACGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
*
666928 ACTATCGCAACGCGAAATGAAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
*
666969 ACTATCTCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
666988 CAACGCGAAT
Statistics
Matches: 166, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 166 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
Found at i:667842 original size:2 final size:2
Alignment explanation
Indices: 667835--667868 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
667825 TAAAAATAAT
667835 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
667869 TAATAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:667889 original size:24 final size:26
Alignment explanation
Indices: 667838--667918 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 26
667828 AAATAATTAT
* * * *
667838 ATATATATATATATATATATATATATA
1 ATATAAATATATATTTA-ATTTAAATA
*
667865 ATATTAATA-A-ATTTAATTTAAATA
1 ATATAAATATATATTTAATTTAAATA
667889 A-A-AAATATATATTTAATTTAAATA
1 ATATAAATATATATTTAATTTAAATA
667913 TATATA
1 -ATATA
667919 TACACCCGAC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
22 4 0.09
23 2 0.05
24 22 0.51
25 5 0.12
26 2 0.05
27 8 0.19
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATAAATATATATTTAATTTAAATA
Found at i:667904 original size:19 final size:19
Alignment explanation
Indices: 667880--667919 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
667870 AATAAATTTA
667880 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
667899 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
667918 AT
1 AT
667920 ACACCCGACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:667951 original size:23 final size:23
Alignment explanation
Indices: 667924--667985 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
667914 ATATATACAC
* *
667924 CCGACCCGATTCCCGACCCAATA
1 CCGACCCAATACCCGACCCAATA
667947 CCGACCCAATACCCGACCCAATA
1 CCGACCCAATACCCGACCCAATA
*
667970 CCTGGCCCAATACCCG
1 CC-GACCCAATACCCG
667986 TTTAAATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 23 0.66
24 12 0.34
ACGTcount: A:0.27, C:0.48, G:0.13, T:0.11
Consensus pattern (23 bp):
CCGACCCAATACCCGACCCAATA
Found at i:667967 original size:12 final size:12
Alignment explanation
Indices: 667922--667985 Score: 85
Period size: 12 Copynumber: 5.4 Consensus size: 12
667912 ATATATATAC
*
667922 ACCCGACCCGAT
1 ACCCGACCCAAT
*
667934 TCCCGACCCAAT
1 ACCCGACCCAAT
667946 A-CCGACCCAAT
1 ACCCGACCCAAT
667957 ACCCGACCCAAT
1 ACCCGACCCAAT
* *
667969 ACCTGGCCCAAT
1 ACCCGACCCAAT
667981 ACCCG
1 ACCCG
667986 TTTAAATACC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
11 11 0.24
12 34 0.76
ACGTcount: A:0.28, C:0.48, G:0.12, T:0.11
Consensus pattern (12 bp):
ACCCGACCCAAT
Found at i:668505 original size:2 final size:2
Alignment explanation
Indices: 668498--668526 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
668488 TACTGTTTTA
668498 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
668527 CACACGTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:668987 original size:22 final size:21
Alignment explanation
Indices: 668941--668988 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
668931 TTAATTCAAT
*
668941 TTTAAATAAATAAAAAATTAC
1 TTTAAATAAATAAAAAATTAA
*
668962 TTTATAATCAAAT-AAATATTAA
1 TTTA-AAT-AAATAAAAAATTAA
668984 TTTAA
1 TTTAA
668989 TTGAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 5 0.22
22 14 0.61
23 4 0.17
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTAAATAAATAAAAAATTAA
Found at i:671745 original size:21 final size:21
Alignment explanation
Indices: 671721--671804 Score: 114
Period size: 21 Copynumber: 4.0 Consensus size: 21
671711 CTTTGGTGGT
* *
671721 ATGGGCGGCATGGGTGACATG
1 ATGGGCGGAATGGGTGGCATG
671742 ATGGGCGGAATGGGTGGCATG
1 ATGGGCGGAATGGGTGGCATG
* *
671763 ATGGGTGGAATGGGCGGCATG
1 ATGGGCGGAATGGGTGGCATG
* *
671784 ATGGGTGGAATGGGCGGCATG
1 ATGGGCGGAATGGGTGGCATG
671805 GGTGACATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.19, C:0.11, G:0.51, T:0.19
Consensus pattern (21 bp):
ATGGGCGGAATGGGTGGCATG
Found at i:671768 original size:12 final size:12
Alignment explanation
Indices: 671730--671791 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
671720 TATGGGCGGC
*
671730 ATGGGTGACATG
1 ATGGGTGGCATG
*
671742 ATGGGCGG-A--
1 ATGGGTGGCATG
671751 ATGGGTGGCATG
1 ATGGGTGGCATG
671763 ATGGGTGG-A--
1 ATGGGTGGCATG
*
671772 ATGGGCGGCATG
1 ATGGGTGGCATG
671784 ATGGGTGG
1 ATGGGTGG
671792 AATGGGCGGC
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
9 14 0.36
10 2 0.05
11 2 0.05
12 21 0.54
ACGTcount: A:0.19, C:0.08, G:0.52, T:0.21
Consensus pattern (12 bp):
ATGGGTGGCATG
Found at i:671776 original size:30 final size:30
Alignment explanation
Indices: 671742--671882 Score: 94
Period size: 30 Copynumber: 4.7 Consensus size: 30
671732 GGGTGACATG
*
671742 ATGGGCGGAATGGGTGGCATGATGGGTGGA
1 ATGGGCGGAATGGGTGGCATGATGGGCGGA
*
671772 ATGGGCGGCATGATGGGTGG-A--ATGGGCGGC
1 ATGGGCGG-A--ATGGGTGGCATGATGGGCGGA
* * * *
671802 ATGGG-TGACAT-GATGGGAGGGATGGGCGGA
1 ATGGGCGGA-ATGGGTGGCA-TGATGGGCGGA
* * * *
671832 ATGGGCGGCATGGGTGACATGATGGGAGGG
1 ATGGGCGGAATGGGTGGCATGATGGGCGGA
* *
671862 ATGAGCGGAATGGGCGGCATG
1 ATGGGCGGAATGGGTGGCATG
671883 GGTGACATGA
Statistics
Matches: 84, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
26 4 0.05
27 3 0.04
28 1 0.01
29 1 0.01
30 60 0.71
31 6 0.07
32 1 0.01
33 8 0.10
ACGTcount: A:0.21, C:0.10, G:0.52, T:0.17
Consensus pattern (30 bp):
ATGGGCGGAATGGGTGGCATGATGGGCGGA
Found at i:671826 original size:39 final size:39
Alignment explanation
Indices: 671783--671913 Score: 235
Period size: 39 Copynumber: 3.4 Consensus size: 39
671773 TGGGCGGCAT
*
671783 GATGGGTGGAATGGGCGGCATGGGTGACATGATGGGAGG
1 GATGGGCGGAATGGGCGGCATGGGTGACATGATGGGAGG
671822 GATGGGCGGAATGGGCGGCATGGGTGACATGATGGGAGG
1 GATGGGCGGAATGGGCGGCATGGGTGACATGATGGGAGG
*
671861 GATGAGCGGAATGGGCGGCATGGGTGACATGATGGGAGG
1 GATGGGCGGAATGGGCGGCATGGGTGACATGATGGGAGG
*
671900 GATGGGCGGCATGG
1 GATGGGCGGAATGG
671914 ATGAGTTTGA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.21, C:0.10, G:0.53, T:0.16
Consensus pattern (39 bp):
GATGGGCGGAATGGGCGGCATGGGTGACATGATGGGAGG
Found at i:686199 original size:18 final size:17
Alignment explanation
Indices: 686167--686200 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
686157 CATAACTATT
*
686167 TTAAATATATTAAATAA
1 TTAAATATATAAAATAA
686184 TTAAATTATATAAAATA
1 TTAAA-TATATAAAATA
686201 TATAGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAATATATAAAATAA
Found at i:688702 original size:2 final size:2
Alignment explanation
Indices: 688691--688724 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
688681 AATTTATTAT
688691 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
688725 TAAAATCTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:691555 original size:25 final size:26
Alignment explanation
Indices: 691497--691560 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
691487 TATAAATGTG
* *
691497 AAATGAATTAAATATAAATATTTAAT
1 AAATAAATTAAATATAAATATATAAT
*
691523 AAATAAA-TAAATATAAATATAATATT
1 AAATAAATTAAATATAAATAT-ATAAT
691549 AAA-AAATTAAAT
1 AAATAAATTAAAT
691561 GAGCACATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 16 0.48
26 17 0.52
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (26 bp):
AAATAAATTAAATATAAATATATAAT
Found at i:691560 original size:30 final size:30
Alignment explanation
Indices: 691497--691611 Score: 81
Period size: 30 Copynumber: 3.6 Consensus size: 30
691487 TATAAATGTG
* *
691497 AAATGAATTAAATATAAATATTTAATAAAT
1 AAATAAATTAAATATAAATATTTAAAAAAT
691527 AAATAAATATAAATAT-AATA-TTAAAAAATT
1 AAATAAAT-TAAATATAAATATTTAAAAAA-T
* * *
691557 AAATGAGCACATATCAAACATAAATACTTTTAAATAT
1 AAAT-A--A-AT-T-AAATATAAATA-TTTAAAAAAT
691594 AAATAAATATAAATATAA
1 AAATAAAT-TAAATATAA
691612 CCTTATTTTG
Statistics
Matches: 69, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
29 7 0.10
30 16 0.23
31 8 0.12
32 7 0.10
33 5 0.07
34 5 0.07
35 5 0.07
36 5 0.07
37 5 0.07
38 6 0.09
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (30 bp):
AAATAAATTAAATATAAATATTTAAAAAAT
Found at i:699796 original size:174 final size:175
Alignment explanation
Indices: 699506--699855 Score: 693
Period size: 174 Copynumber: 2.0 Consensus size: 175
699496 ACTTATGCGC
699506 TTAAATTCAACTGTGGCATTGGAAGTGGAGTCTTTAGTGATGTGATGTTTGCTATATACCCTGCA
1 TTAAATTCAACTGTGGCATTGGAAGTGGAGTCTTTAGTGATGTGATGTTTGCTATATACCCTGCA
699571 AAATATCAAAACTTAATCTACCCCAAATTACGCATCACTGCATGCTTTTCTCATTCAACCAATAC
66 AAATATCAAAACTTAATCTACCCCAAATTACGCATCACTGCATGCTTTTCTCATTCAACCAATAC
699636 CATACTTTTCATCTAAATCGAAACAACCATTGAAACAACA-CGTT
131 CATACTTTTCATCTAAATCGAAACAACCATTGAAACAACACCGTT
699680 TTAAATTCAACTGTGGCATTGGAAGTGGAGTCTTTAGTGATGTGATGTTTGCTATATACCCTGCA
1 TTAAATTCAACTGTGGCATTGGAAGTGGAGTCTTTAGTGATGTGATGTTTGCTATATACCCTGCA
699745 AAATATCAAAACTTAATCTACCCCAAATTACGCATCACTGCATGCTTTTCTCATTCAACCAATAC
66 AAATATCAAAACTTAATCTACCCCAAATTACGCATCACTGCATGCTTTTCTCATTCAACCAATAC
699810 CATACTTTTCATCTAAATCGAAACAACCATTGAAACAACACCGTT
131 CATACTTTTCATCTAAATCGAAACAACCATTGAAACAACACCGTT
699855 T
1 T
699856 CACCCCTTTT
Statistics
Matches: 175, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
174 170 0.97
175 5 0.03
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.32
Consensus pattern (175 bp):
TTAAATTCAACTGTGGCATTGGAAGTGGAGTCTTTAGTGATGTGATGTTTGCTATATACCCTGCA
AAATATCAAAACTTAATCTACCCCAAATTACGCATCACTGCATGCTTTTCTCATTCAACCAATAC
CATACTTTTCATCTAAATCGAAACAACCATTGAAACAACACCGTT
Found at i:700670 original size:10 final size:10
Alignment explanation
Indices: 700652--700683 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
700642 AGTAATGATA
700652 TATGTATTTC
1 TATGTATTTC
*
700662 TATGAATTTC
1 TATGTATTTC
700672 TATGTATTTC
1 TATGTATTTC
700682 TA
1 TA
700684 AGATTTAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.56
Consensus pattern (10 bp):
TATGTATTTC
Found at i:700753 original size:60 final size:60
Alignment explanation
Indices: 700685--701308 Score: 442
Period size: 60 Copynumber: 10.2 Consensus size: 60
700675 GTATTTCTAA
*
700685 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATAGTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
*
700745 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATATTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
* * * * *
700805 GATTTAATAATGATTAGTAATAATGAAATTATTATTACTTTTTAATGATTTGATAATAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
* *
700865 GA-TTAGTAATGATTAGTAATAAT-AATTTATTATTAATATTTAATGATTTGATATTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
* * * ** * * * *
700923 GATTTAGTAATGATTTGATAGTAATG-ATTTACGACTTGAACAATGAATAATGTTGGTTAAT-TA
1 GATTTAGTAATGATTAG-TAATAATGAAATTATTA-TT-AA-TAT--TTAATGAT--TTAATATT
700986 ACCAT
58 A--AT
* * * * * * *
700991 -ATTTCGTTACATAAAAATTA-TAATAATG-ATTTAGTAATGATTAGTA-ATAATGAAATTATTA
1 GATTTAG-TA-AT---GATTAGTAATAATGAAATTA-T--T-ATTAATATTTAATG-ATTTAATA
701052 TTAAT
56 TTAAT
* * * * * * ** * *
701057 -ATTTAATGATTTGA-TATTAATAATTTAGTAATGATTAGTAATAATGAAATTATTATTCATATT
1 GATTTAGT-A-ATGATTAGTAATAA--T-GAAATTATTATTAAT-ATTTAATGA-T-TTAATA-T
701120 TAAT
57 TAAT
* *
701124 GATTTGATAGTAATGATTAGTAATAATGAAA-TATTATT-ATATTTAAGGATTT--GATTAAT
1 GA-TT--TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
*
701183 GATTTAGT-A--ATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTAATAATT-AT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAAT-ATTAAT
* * *
701240 -AATTAGTAATGATTGGTAATAAT-AATTTATTATTAATATTTAATGATTTAATATTAAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
701298 GATTTAGTAAT
1 GATTTAGTAAT
701309 AATTTGATAG
Statistics
Matches: 449, Mismatches: 66, Indels: 99
0.73 0.11 0.16
Matches are distributed among these distances:
53 16 0.04
54 7 0.02
55 13 0.03
56 10 0.02
57 6 0.01
58 67 0.15
59 60 0.13
60 129 0.29
61 2 0.00
62 6 0.01
63 14 0.03
64 8 0.02
65 13 0.03
66 21 0.05
67 24 0.05
68 14 0.03
69 7 0.02
70 21 0.05
71 4 0.01
72 4 0.01
73 2 0.00
74 1 0.00
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.46
Consensus pattern (60 bp):
GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATATTAAT
Found at i:700913 original size:21 final size:22
Alignment explanation
Indices: 700884--700953 Score: 63
Period size: 25 Copynumber: 3.1 Consensus size: 22
700874 TGATTAGTAA
700884 TAATAATTT-ATTATTAAT-ATT
1 TAATAATTTGA-TATTAATGATT
*
700905 TAATGATTTGATATTAATGATTT
1 TAATAATTTGATATTAATGA-TT
* *
700928 AGTAATGATTTGATAGTAATGATT
1 --TAATAATTTGATATTAATGATT
700952 TA
1 TA
700954 CGACTTGAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
21 15 0.36
22 4 0.10
23 2 0.05
24 2 0.05
25 19 0.45
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (22 bp):
TAATAATTTGATATTAATGATT
Found at i:700921 original size:14 final size:14
Alignment explanation
Indices: 700905--700952 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
700895 TATTAATATT
*
700905 TAATGATTTGATAT
1 TAATGATTTGATAG
700919 TAATGA-TT--TAG
1 TAATGATTTGATAG
700930 TAATGATTTGATAG
1 TAATGATTTGATAG
700944 TAATGATTT
1 TAATGATTT
700953 ACGACTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 8 0.27
12 2 0.07
13 2 0.07
14 18 0.60
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (14 bp):
TAATGATTTGATAG
Found at i:701054 original size:21 final size:21
Alignment explanation
Indices: 701027--701109 Score: 57
Period size: 21 Copynumber: 4.1 Consensus size: 21
701017 TGATTTAGTA
701027 ATGATTAGTAATAATGAAATT
1 ATGATTAGTAATAATGAAATT
* * *
701048 ATTATTAATATTTAATG--ATT
1 ATGATTAGTA-ATAATGAAATT
* ** * *
701068 -TGA-TATTAATAATTTAGTA
1 ATGATTAGTAATAATGAAATT
701087 ATGATTAGTAATAATGAAATT
1 ATGATTAGTAATAATGAAATT
701108 AT
1 AT
701110 TATTCATATT
Statistics
Matches: 43, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
17 4 0.09
18 4 0.09
19 3 0.07
20 6 0.14
21 21 0.49
22 5 0.12
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (21 bp):
ATGATTAGTAATAATGAAATT
Found at i:701224 original size:102 final size:107
Alignment explanation
Indices: 700800--701249 Score: 332
Period size: 102 Copynumber: 4.3 Consensus size: 107
700790 TGATTTGATA
* * *
700800 TTAATGATTT-A-A-TAATGATTAGTAATAATGAAATTATTATTACTTTTTAATGATTTG-A-TA
1 TTAATGATTTAATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAGGATTTGAATTA
*
700860 ATAATGATTAGTAATGATTAGTAATAAT-AATTTATTATTAATAT
66 ATAAT--TTAGTAA-GATTAGTAATAATGAAATTATTATTAATAT
* * * * * * *
700904 TTAATGATTTGATATTAATGATT--TAGTAATG-ATTTGA-TAGTAATGATTT-ACGACTTGAAC
1 TTAATGATTTAATAGTAATGATTAGTAATAATGAAATT-ATTATTAAT-ATTTAAGGATTTG---
* * * *** * * * **
700964 AATGAATAATGTTGGTTA-ATTAACCATATTTCGTTACATAAAAATT-ATA-
61 AATTAATAAT-TTAGTAAGATTAGTAATA-AT-G--AAATTATTATTAATAT
* *
701013 ATAATGA-TT--TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATATT
1 TTAATGATTTAATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAGGATTTGA-ATT
*
701075 AATAATTTAGTAATGATTAGTAATAATGAAATTATTATTCATAT
65 AATAATTTAGTAA-GATTAGTAATAATGAAATTATTATTAATAT
*
701119 TTAATGATTTGATAGTAATGATTAGTAATAATGAAA-TATTATT-ATATTTAAGGATTTG-ATTA
1 TTAATGATTTAATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAGGATTTGAATTA
* *
701181 ATGATTTAGT-A-ATTAGTAATAATGAAATTATTATTAATTT
66 ATAATTTAGTAAGATTAGTAATAATGAAATTATTATTAATAT
* * *
701221 TTAATGATTTAATAATTATAATTAGTAAT
1 TTAATGATTTAATAGTAATGATTAGTAAT
701250 GATTGGTAAT
Statistics
Matches: 271, Mismatches: 47, Indels: 58
0.72 0.12 0.15
Matches are distributed among these distances:
102 52 0.19
104 32 0.12
105 28 0.10
106 31 0.11
107 34 0.13
108 34 0.13
109 51 0.19
110 3 0.01
111 6 0.02
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (107 bp):
TTAATGATTTAATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAGGATTTGAATTA
ATAATTTAGTAAGATTAGTAATAATGAAATTATTATTAATAT
Found at i:701288 original size:21 final size:22
Alignment explanation
Indices: 701221--701308 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 22
701211 TTATTAATTT
701221 TTAATGATTTAATAATTATAATTA
1 TTAATGATTTAATAATT-TAA-TA
* *
701245 GTAATGATTGGTAATAATAATTTATTA
1 TTAATGA-T--T--TAATAATTTAATA
*
701272 TTAAT-ATTTAATGATTTAATA
1 TTAATGATTTAATAATTTAATA
*
701293 TTAATGATTTAGTAAT
1 TTAATGATTTAATAAT
701309 AATTTGATAG
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
21 16 0.31
22 8 0.16
23 1 0.02
24 6 0.12
25 2 0.04
26 1 0.02
27 7 0.14
28 2 0.04
29 8 0.16
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (22 bp):
TTAATGATTTAATAATTTAATA
Found at i:701296 original size:14 final size:15
Alignment explanation
Indices: 701272--701303 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
701262 TAATTTATTA
701272 TTAATATTTAATGAT
1 TTAATATTTAATGAT
701287 TTAATA-TTAATGAT
1 TTAATATTTAATGAT
701301 TTA
1 TTA
701304 GTAATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (15 bp):
TTAATATTTAATGAT
Found at i:701494 original size:60 final size:60
Alignment explanation
Indices: 701397--701536 Score: 246
Period size: 60 Copynumber: 2.4 Consensus size: 60
701387 TAATGAAATT
701397 ATAATAATGATTTAGTAATGATTAGCAATAATGAAATTATTATTAATATTTAATAATTTG
1 ATAATAATGATTTAGTAATGATTAGCAATAATGAAATTATTATTAATATTTAATAATTTG
* * *
701457 ATATTAATGATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTG
1 ATAATAATGATTTAGTAATGATTAGCAATAATGAAATTATTATTAATATTTAATAATTTG
701517 ATAATAATGA-TTAGTAATGA
1 ATAATAATGATTTAGTAATGA
701537 AATTATTATT
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
59 10 0.13
60 66 0.87
ACGTcount: A:0.44, C:0.01, G:0.11, T:0.44
Consensus pattern (60 bp):
ATAATAATGATTTAGTAATGATTAGCAATAATGAAATTATTATTAATATTTAATAATTTG
Found at i:701530 original size:49 final size:49
Alignment explanation
Indices: 701472--701583 Score: 180
Period size: 46 Copynumber: 2.4 Consensus size: 49
701462 AATGATTTAG
701472 TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAA
1 TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAA
*
701521 TAATGATTAG---TAATGAAATTATTATTAATATTTAATGATTTGATAT
1 TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAA
701567 TAATGATT--TAATAATGA
1 TAATGATTAGTAATAATGA
701584 TTAGTAATAA
Statistics
Matches: 59, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
46 43 0.73
47 6 0.10
49 10 0.17
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.46
Consensus pattern (49 bp):
TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAA
Found at i:701570 original size:60 final size:59
Alignment explanation
Indices: 701506--701684 Score: 212
Period size: 60 Copynumber: 3.1 Consensus size: 59
701496 TTATTAATAT
701506 TTAATGATTTGATAATAATGATTAGTAATGAAATTATTATTAATATTTAATGATTTGATA
1 TTAATGATTT-ATAATAATGATTAGTAATGAAATTATTATTAATATTTAATGATTTGATA
*
701566 TTAATGA-TT-TAATAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATA
1 TTAATGATTTATAATAATGATTAG---TAATGAAATTATTATTAATATTTAATGATTTGATA
* * *
701626 GTAATG--TT-TAATAATGATTAGTAATAATAATTTATTATTAA-A--TAATGATTTGTTA
1 TTAATGATTTATAATAATGATTAGTAATGA-AA-TTATTATTAATATTTAATGATTTGATA
701681 TTAA
1 TTAA
701685 ATAATTTTCG
Statistics
Matches: 108, Mismatches: 6, Indels: 15
0.84 0.05 0.12
Matches are distributed among these distances:
55 15 0.14
56 5 0.05
57 15 0.14
58 10 0.09
59 17 0.16
60 46 0.43
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (59 bp):
TTAATGATTTATAATAATGATTAGTAATGAAATTATTATTAATATTTAATGATTTGATA
Found at i:701671 original size:18 final size:18
Alignment explanation
Indices: 701648--701689 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
701638 AATGATTAGT
701648 AATAATAATTTATTATTA
1 AATAATAATTTATTATTA
* *
701666 AATAATGATTTGTTATTA
1 AATAATAATTTATTATTA
701684 AATAAT
1 AATAAT
701690 TTTCGTTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (18 bp):
AATAATAATTTATTATTA
Found at i:703860 original size:15 final size:14
Alignment explanation
Indices: 703837--703867 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
703827 TACAACACTA
703837 AACTTTAATATAAT
1 AACTTTAATATAAT
703851 AACTTATAATATAAT
1 AACTT-TAATATAAT
703866 AA
1 AA
703868 ACTAACAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AACTTTAATATAAT
Found at i:704214 original size:21 final size:22
Alignment explanation
Indices: 704190--704230 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
704180 TTTATGTATA
*
704190 ATATAA-CTTAAACTAACAATC
1 ATATAACCCTAAACTAACAATC
704211 ATATAACCCTAAACTAACAA
1 ATATAACCCTAAACTAACAA
704231 ACTAATTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (22 bp):
ATATAACCCTAAACTAACAATC
Found at i:704421 original size:26 final size:26
Alignment explanation
Indices: 704392--704459 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
704382 GGCTGTAGTT
*
704392 TCTTCTCCCTTTCTTCTGCTGCAATC
1 TCTTCTCCCTTTCTTCAGCTGCAATC
704418 TCTTCTCCCTTTCTTCAGCTGCAATC
1 TCTTCTCCCTTTCTTCAGCTGCAATC
704444 TCTTCTCCCCTTTCTT
1 TCTTCT-CCCTTTCTT
704460 TCTTTTATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 31 0.77
27 9 0.22
ACGTcount: A:0.07, C:0.40, G:0.06, T:0.47
Consensus pattern (26 bp):
TCTTCTCCCTTTCTTCAGCTGCAATC
Found at i:713997 original size:33 final size:33
Alignment explanation
Indices: 713955--714029 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 33
713945 CCGAGGCCAT
* *
713955 CCGAACGAGCTATGCGAGGGCATCCAAGGGCAA
1 CCGAGCGAGCTATGCGAGGGAATCCAAGGGCAA
* *
713988 CCGAGCGAGCTTTGCGAGGGAATCCGAGGGCAA
1 CCGAGCGAGCTATGCGAGGGAATCCAAGGGCAA
714021 CCGAGCGAG
1 CCGAGCGAG
714030 GGTAGGTCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.27, C:0.27, G:0.37, T:0.09
Consensus pattern (33 bp):
CCGAGCGAGCTATGCGAGGGAATCCAAGGGCAA
Found at i:714066 original size:29 final size:29
Alignment explanation
Indices: 714033--714090 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
714023 GAGCGAGGGT
714033 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
*
714062 AGGTCGCCCGGGGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
714091 TCGCTCGGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.19, C:0.31, G:0.36, T:0.14
Consensus pattern (29 bp):
AGGTCGCCCGGAGTGCATGGCGACCTACA
Found at i:714147 original size:33 final size:32
Alignment explanation
Indices: 714091--714181 Score: 112
Period size: 33 Copynumber: 2.8 Consensus size: 32
714081 GCGACCTACA
* *
714091 TCGCTCGGTAGCC-CGGATTCCCTCGCATAGC
1 TCGCTCGGTTGCCTCGGATGCCCTCGCATAGC
*
714122 TCGCTCGGTTGCCCTCGGATGCCCTCACATAGC
1 TCGCTCGGTTG-CCTCGGATGCCCTCGCATAGC
* *
714155 TCGTTCGGTTGGCCTCGGATGCTCTCG
1 TCGCTCGGTT-GCCTCGGATGCCCTCG
714182 GATGCTTTCG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
31 10 0.20
32 2 0.04
33 38 0.75
34 1 0.02
ACGTcount: A:0.10, C:0.36, G:0.27, T:0.26
Consensus pattern (32 bp):
TCGCTCGGTTGCCTCGGATGCCCTCGCATAGC
Found at i:719346 original size:31 final size:31
Alignment explanation
Indices: 719307--719375 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
719297 AGAAAGGAAG
719307 AAAAAATATTTAGTAAAATTATATAATAGTA
1 AAAAAATATTTAGTAAAATTATATAATAGTA
*
719338 AGAAAATATTTAGTAAAATTATATAATAGTA
1 AAAAAATATTTAGTAAAATTATATAATAGTA
719369 AAAAAAT
1 AAAAAAT
719376 TCAAAATAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (31 bp):
AAAAAATATTTAGTAAAATTATATAATAGTA
Found at i:719353 original size:15 final size:14
Alignment explanation
Indices: 719307--719355 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
719297 AGAAAGGAAG
719307 AAAAAATATTTAGT
1 AAAAAATATTTAGT
* *
719321 AAAATTATATAATAGT
1 AAAA-AATAT-TTAGT
719337 AAGAAAATATTTAGT
1 AA-AAAATATTTAGT
719352 AAAA
1 AAAA
719356 TTATATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 6 0.21
15 10 0.36
16 10 0.36
17 2 0.07
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (14 bp):
AAAAAATATTTAGT
Found at i:719361 original size:15 final size:16
Alignment explanation
Indices: 719317--719371 Score: 69
Period size: 16 Copynumber: 3.5 Consensus size: 16
719307 AAAAAATATT
719317 TAGTAAAATTATATAA
1 TAGTAAAATTATATAA
* *
719333 TAGTAAGAA-AATAT-T
1 TAGTAA-AATTATATAA
719348 TAGTAAAATTATATAA
1 TAGTAAAATTATATAA
719364 TAGTAAAA
1 TAGTAAAA
719372 AAATTCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 2 0.06
15 10 0.31
16 18 0.56
17 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
TAGTAAAATTATATAA
Found at i:719476 original size:17 final size:18
Alignment explanation
Indices: 719454--719496 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
719444 TTGATTTCCA
*
719454 AATTTTAAAATTATTT-T
1 AATTTTAAAATAATTTAT
719471 AATTTTAAAATAATTTAAT
1 AATTTTAAAATAATTT-AT
719490 AATTTTA
1 AATTTTA
719497 CAGGTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.65
19 8 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTTTAAAATAATTTAT
Found at i:720096 original size:25 final size:23
Alignment explanation
Indices: 720068--720124 Score: 60
Period size: 25 Copynumber: 2.4 Consensus size: 23
720058 CGGATTTGTA
* *
720068 ATATTTTATTATAAATCTATTTATT
1 ATATTTTAATATAAAT-T-TTAATT
**
720093 ATATAATAATATAAATTTTAATT
1 ATATTTTAATATAAATTTTAATT
720116 ATATTTTAA
1 ATATTTTAA
720125 AAATAAACCG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 12 0.46
24 1 0.04
25 13 0.50
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
ATATTTTAATATAAATTTTAATT
Found at i:723574 original size:22 final size:23
Alignment explanation
Indices: 723529--723580 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
723519 GACCTCAAAT
723529 ACTGCACCATACCTTTAAAAAAA
1 ACTGCACCATACCTTTAAAAAAA
723552 ACTGCACCATACCTTT-AAAAAA
1 ACTGCACCATACCTTTAAAAAAA
723574 ACTGCAC
1 ACTGCAC
723581 ATGAATTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 13 0.45
23 16 0.55
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.21
Consensus pattern (23 bp):
ACTGCACCATACCTTTAAAAAAA
Found at i:732186 original size:140 final size:140
Alignment explanation
Indices: 731934--732219 Score: 518
Period size: 140 Copynumber: 2.0 Consensus size: 140
731924 CCATTGATAG
*
731934 GTCTAATCATGATTGATATGACAAAGACCACTTTGGTCTTATATGGATATAGTTGATGGACGAGA
1 GTCTAATCATGATTGATATGACAAAGACCACTTTGGTCTTATATGGATATAGTTGATGGACAAGA
*
731999 TTGTTATAGAATACCTATTGTATGATAACAAATTTTGAGCTCATAAGGTTATACATTTATCAGGA
66 TTGTTATAGAATACCTATTGCATGATAACAAATTTTGAGCTCATAAGGTTATACATTTATCAGGA
732064 AACATATGTT
131 AACATATGTT
* * *
732074 GTCTAGTCATGATTGATATGACAAAGGCTACTTTGGTCTTATATGGATATAGTTGATGGACAAGA
1 GTCTAATCATGATTGATATGACAAAGACCACTTTGGTCTTATATGGATATAGTTGATGGACAAGA
732139 TTGTTATAGAATACCTATTGCATGATAACAAATTTTGAGCTCATAAGGTTATACATTTATCAGGA
66 TTGTTATAGAATACCTATTGCATGATAACAAATTTTGAGCTCATAAGGTTATACATTTATCAGGA
732204 AACATATGTT
131 AACATATGTT
*
732214 GCCTAA
1 GTCTAA
732220 GTTGGAGATT
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 139 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (140 bp):
GTCTAATCATGATTGATATGACAAAGACCACTTTGGTCTTATATGGATATAGTTGATGGACAAGA
TTGTTATAGAATACCTATTGCATGATAACAAATTTTGAGCTCATAAGGTTATACATTTATCAGGA
AACATATGTT
Found at i:737313 original size:20 final size:21
Alignment explanation
Indices: 737280--737320 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
737270 TATCATTGAA
737280 AAAATACAAAAAAATAGTAAG
1 AAAATACAAAAAAATAGTAAG
737301 AAAATAC-AAAAAATAGTAAG
1 AAAATACAAAAAAATAGTAAG
737321 TAGAGATGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATACAAAAAAATAGTAAG
Found at i:737495 original size:18 final size:19
Alignment explanation
Indices: 737472--737545 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 19
737462 AACCAAACTC
737472 AAAATAATATATTTATT-A
1 AAAATAATATATTTATTGA
*
737490 AAAATATATTATTTTTATTGA
1 AAAATA-A-TATATTTATTGA
* *
737511 ATAAAAAATAAAGATTTAATTGA
1 A-AAATAAT--ATATTT-ATTGA
737534 AAAATAATATAT
1 AAAATAATATAT
737546 AGAGAAACAT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
18 6 0.14
19 1 0.02
20 13 0.30
21 3 0.07
22 14 0.33
23 6 0.14
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (19 bp):
AAAATAATATATTTATTGA
Found at i:740737 original size:26 final size:26
Alignment explanation
Indices: 740708--740760 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
740698 ATTTTTTCTA
* *
740708 ATATTTTTTATTGAA-TAAAAAATATT
1 ATATTTTTGATTCAACT-AAAAATATT
740734 ATATTTTTGATTCAACTAAAAATATT
1 ATATTTTTGATTCAACTAAAAATATT
740760 A
1 A
740761 AAAGATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (26 bp):
ATATTTTTGATTCAACTAAAAATATT
Found at i:741847 original size:3 final size:3
Alignment explanation
Indices: 741841--741883 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
741831 AACAAACAAT
741841 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
741884 AAGTTTTCAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:749304 original size:23 final size:23
Alignment explanation
Indices: 749278--749366 Score: 63
Period size: 23 Copynumber: 3.8 Consensus size: 23
749268 ACCCTTGCTT
749278 GCTCGCTCGGATGCCCTCGCATA
1 GCTCGCTCGGATGCCCTCGCATA
* * * * *
749301 GCTCGTTCGGCTGGCCTCG-GTCG
1 GCTCGCTCGGATGCCCTCGCAT-A
* * *
749324 GATGGCCTCGGATGCTCTCGCATA
1 GCTCG-CTCGGATGCCCTCGCATA
* *
749348 GCTCGGTCGGATGGCCTCG
1 GCTCGCTCGGATGCCCTCG
749367 GATGCCCAGC
Statistics
Matches: 45, Mismatches: 18, Indels: 6
0.65 0.26 0.09
Matches are distributed among these distances:
22 1 0.02
23 30 0.67
24 13 0.29
25 1 0.02
ACGTcount: A:0.09, C:0.34, G:0.34, T:0.24
Consensus pattern (23 bp):
GCTCGCTCGGATGCCCTCGCATA
Found at i:749447 original size:29 final size:29
Alignment explanation
Indices: 749410--749467 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
749400 GCAATCTCTC
* *
749410 GTAGCTCGCCGGGAAGACATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGACGACCTA
* *
749439 GTAGGTCGCCCGGAAGGCATGACGACCTA
1 GTAGCTCGCCCGGAAGACATGACGACCTA
749468 CGACCAACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.34, T:0.14
Consensus pattern (29 bp):
GTAGCTCGCCCGGAAGACATGACGACCTA
Found at i:760643 original size:9 final size:8
Alignment explanation
Indices: 760625--760692 Score: 52
Period size: 8 Copynumber: 8.5 Consensus size: 8
760615 TAATTATAAT
760625 ATTTTT-A
1 ATTTTTCA
760632 ATTTATTCA
1 ATTT-TTCA
*
760641 ATTTTTCT
1 ATTTTTCA
760649 A-TTTT-A
1 ATTTTTCA
*
760655 ATATTTTTA
1 AT-TTTTCA
760664 ATTTATTCA
1 ATTT-TTCA
*
760673 ATTTTTCT
1 ATTTTTCA
*
760681 ATTTTTTA
1 ATTTTTCA
760689 ATTT
1 ATTT
760693 CTATTTTCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
6 1 0.02
7 8 0.16
8 25 0.51
9 15 0.31
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (8 bp):
ATTTTTCA
Found at i:760644 original size:16 final size:16
Alignment explanation
Indices: 760625--760678 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
760615 TAATTATAAT
760625 ATTTTTAATTTATTCA
1 ATTTTTAATTTATTCA
* *
760641 ATTTTT-CTATT-TTAA
1 ATTTTTAAT-TTATTCA
760656 TATTTTTAATTTATTCA
1 -ATTTTTAATTTATTCA
760673 ATTTTT
1 ATTTTT
760679 CTATTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
15 4 0.13
16 22 0.73
17 4 0.13
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTTTAATTTATTCA
Found at i:760658 original size:32 final size:32
Alignment explanation
Indices: 760621--760685 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
760611 AATTTAATTA
760621 TAATATTTTTAATTTATTCAATTTTTCTATTT
1 TAATATTTTTAATTTATTCAATTTTTCTATTT
760653 TAATATTTTTAATTTATTCAATTTTTCTATTT
1 TAATATTTTTAATTTATTCAATTTTTCTATTT
760685 T
1 T
760686 TTAATTTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (32 bp):
TAATATTTTTAATTTATTCAATTTTTCTATTT
Found at i:763334 original size:18 final size:18
Alignment explanation
Indices: 763294--763336 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
763284 CCTTTTGTTG
*
763294 ATAAATTCTTTTTTCCAA
1 ATAAATTCTTGTTTCCAA
*
763312 GTAAATTCGTTGTTT-CAA
1 ATAAATTC-TTGTTTCCAA
763330 ATAAATT
1 ATAAATT
763337 TTGAATGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (18 bp):
ATAAATTCTTGTTTCCAA
Found at i:765686 original size:96 final size:96
Alignment explanation
Indices: 765485--765759 Score: 460
Period size: 96 Copynumber: 2.8 Consensus size: 96
765475 GGGGGGGAGA
* *
765485 ATGTGTTGGAGAATGCTTTCCCTCCTATGCTATGTAAATATACATGAATTAGACTTTCAAAATTA
1 ATGTGTTGAAGAATGCTTTCCCTCCTATGCTATGTAAAAATACATGAATT--ACTTTCAAAATTA
* * *
765550 TGTACAAGAAAAGTTACAGGGAGGGAGGGAAGG
64 TGTACAAGGAAAGTTACAGGGAGGAAAGGAAGG
* *
765583 ATGTGTTGAAGAATGCTTTCCCTCCAATGCTATGTAAAAATACATGAATTACTTTCAAATTTATG
1 ATGTGTTGAAGAATGCTTTCCCTCCTATGCTATGTAAAAATACATGAATTACTTTCAAAATTATG
*
765648 TACAAGGAAAGTTACAGGGAGGAAATGAAGG
66 TACAAGGAAAGTTACAGGGAGGAAAGGAAGG
765679 ATGTGTTGAAGAATGCTTTCCCTCCTATGCTATGTAAAAATACATGAATTACTTTCAAAATTATG
1 ATGTGTTGAAGAATGCTTTCCCTCCTATGCTATGTAAAAATACATGAATTACTTTCAAAATTATG
765744 TACAAGGAAAGTTACA
66 TACAAGGAAAGTTACA
765760 CTTACAAAAT
Statistics
Matches: 167, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
96 120 0.72
98 47 0.28
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (96 bp):
ATGTGTTGAAGAATGCTTTCCCTCCTATGCTATGTAAAAATACATGAATTACTTTCAAAATTATG
TACAAGGAAAGTTACAGGGAGGAAAGGAAGG
Found at i:773190 original size:18 final size:18
Alignment explanation
Indices: 773167--773219 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
773157 ATATCATAAA
773167 ATATTTAAATTATAGTTC
1 ATATTTAAATTATAGTTC
*
773185 ATATTTAATAATTAAAGTTC
1 ATATTT-A-AATTATAGTTC
*
773205 ATATATAAAGTTATA
1 ATATTTAAA-TTATA
773220 AACTGACAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 8 0.28
19 6 0.21
20 15 0.52
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (18 bp):
ATATTTAAATTATAGTTC
Found at i:774993 original size:24 final size:23
Alignment explanation
Indices: 774956--775001 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
774946 TACTTGATAC
774956 TAAATAGGATTTTTATAATATTTT
1 TAAATAGGATTTTTATAA-ATTTT
*
774980 TAAATA-GATTTTTTTTAAATTT
1 TAAATAGGA-TTTTTATAAATTT
775002 ATAATTTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (23 bp):
TAAATAGGATTTTTATAAATTTT
Found at i:775547 original size:17 final size:17
Alignment explanation
Indices: 775503--775563 Score: 77
Period size: 17 Copynumber: 3.6 Consensus size: 17
775493 TTTTAAATAT
*
775503 TTTTATTAAATATTTTA
1 TTTTATTAAATATTATA
* **
775520 TTGTAAAAAATATTATA
1 TTTTATTAAATATTATA
*
775537 TTTTATTAAATATAATA
1 TTTTATTAAATATTATA
775554 TTTTATTAAA
1 TTTTATTAAA
775564 CGTGTTTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
TTTTATTAAATATTATA
Found at i:775605 original size:23 final size:23
Alignment explanation
Indices: 775513--775623 Score: 68
Period size: 23 Copynumber: 4.7 Consensus size: 23
775503 TTTTATTAAA
* *
775513 TATTTTATTGTAAA-A-AATATTA
1 TATTTTATT-TAAATATTATATTT
*
775535 TATTTTA-TTAAATATAATATTT
1 TATTTTATTTAAATATTATATTT
** * *
775557 TATTAAACGTGTTTAATAATTTTATTT
1 TATTTTA--T-TTAAAT-ATTATATTT
775584 TATTATT-TTTAAATATTATATTT
1 TATT-TTATTTAAATATTATATTT
*
775607 TATTTTATTTTAATATT
1 TATTTTATTTAAATATT
775624 TTTAAATATA
Statistics
Matches: 69, Mismatches: 11, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
20 4 0.06
21 2 0.03
22 20 0.29
23 21 0.30
24 5 0.07
25 1 0.01
26 5 0.07
27 11 0.16
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (23 bp):
TATTTTATTTAAATATTATATTT
Found at i:775612 original size:33 final size:31
Alignment explanation
Indices: 775573--775646 Score: 112
Period size: 33 Copynumber: 2.3 Consensus size: 31
775563 ACGTGTTTAA
*
775573 TAATTTTATTTTATTATTTTTAAATATTATATT
1 TAATTTTATTTTAATATTTTTAAATA-TAT-TT
*
775606 TTATTTTATTTTAATATTTTTAAATATATTT
1 TAATTTTATTTTAATATTTTTAAATATATTT
775637 TAATTTTATT
1 TAATTTTATT
775647 AATGATTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 11 0.29
32 3 0.08
33 24 0.63
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (31 bp):
TAATTTTATTTTAATATTTTTAAATATATTT
Found at i:775685 original size:24 final size:25
Alignment explanation
Indices: 775656--775709 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
775646 TAATGATTAT
*
775656 ATTATATTATATTGT-TTTTAT-ATA
1 ATTATAATATATT-TATTTTATAATA
*
775680 ATTATAATATATTTATTTTTTAATA
1 ATTATAATATATTTATTTTATAATA
775705 ATTAT
1 ATTAT
775710 TTGTGATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.04
24 17 0.65
25 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTATAATATATTTATTTTATAATA
Found at i:775685 original size:29 final size:25
Alignment explanation
Indices: 775568--775709 Score: 92
Period size: 29 Copynumber: 5.5 Consensus size: 25
775558 ATTAAACGTG
* * *
775568 TTTAATAATTTTATTTTA-TTATTT
1 TTTAATAATTATAATATATTTATTT
* * * *
775592 TTAAAT-ATTATATTTTATTT-TAT
1 TTTAATAATTATAATATATTTATTT
* *
775615 TTTAATATTTTTAAATATATTTTAATTT
1 TTTAATAATTAT-AATATA-TTT-ATTT
* *
775643 TATTAATGATTATATTATATTATATTGTT
1 T-TTAATAATTATAATATATT-TA-T-TT
775672 TTTATATAATTATAATATATTTATTT
1 TTTA-ATAATTATAATATATTTATTT
775698 TTTAATAATTAT
1 TTTAATAATTAT
775710 TTGTGATACT
Statistics
Matches: 92, Mismatches: 15, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
23 17 0.18
24 10 0.11
25 12 0.13
26 9 0.10
27 4 0.04
28 15 0.16
29 25 0.27
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.63
Consensus pattern (25 bp):
TTTAATAATTATAATATATTTATTT
Found at i:777183 original size:21 final size:20
Alignment explanation
Indices: 777144--777183 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
777134 CTGATCTTCT
*
777144 ATAAATTTTATCTTTTGTAC
1 ATAAATTTTATCTTGTGTAC
*
777164 ATAAAGTTTTATGTTGTGTA
1 ATAAA-TTTTATCTTGTGTA
777184 TGTATTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (20 bp):
ATAAATTTTATCTTGTGTAC
Found at i:777886 original size:2 final size:2
Alignment explanation
Indices: 777879--777926 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
777869 TATATTTCTT
777879 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
777921 TA TA TA
1 TA TA TA
777927 ATTGAGAGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:779895 original size:183 final size:182
Alignment explanation
Indices: 779580--779964 Score: 609
Period size: 183 Copynumber: 2.1 Consensus size: 182
779570 AACCGAAATT
* *
779580 AAATTTTAAATATATTATATATAACATATGAGCTCAACCCAAATAATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAAAATATGAGCTCAACCCAAATAATTTAAAACCCAATTAATAA
*
779645 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAAGTATATAAATTTTT
66 TTTAAGATCAAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAAGTATATAAATTTTT
*
779710 TATTTTATAATTATATATTATTTAAATTAATTGTAAACTGTTTTTT-AATTAAA
131 TATTTTATAATTATATATTATTTAAATTAATTATAAACT-TTTTTTGAATT-AA
*
779763 AAATATTAAATATATTATATATAAAATATGGGCT-AAGCCCAAACT-ATTTAAAACCCAATTAAT
1 AAATATTAAATATATTATATATAAAATATGAGCTCAA-CCCAAA-TAATTTAAAACCCAATTAAT
* *
779826 AATTTAAGATCAAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTTATCTAAA-T
64 AATTTAAGATCAAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAA-GTATATAAATT
779890 TTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAA
128 TTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAA
* *
779945 AAATATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
779965 AATTAGAAAA
Statistics
Matches: 189, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
181 8 0.04
182 20 0.11
183 153 0.81
184 8 0.04
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (182 bp):
AAATATTAAATATATTATATATAAAATATGAGCTCAACCCAAATAATTTAAAACCCAATTAATAA
TTTAAGATCAAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAAGTATATAAATTTTT
TATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAA
Found at i:783654 original size:27 final size:27
Alignment explanation
Indices: 783616--783669 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
783606 CGACTCTTCA
*
783616 ACTTATCAGATATTTTATTAGTAACAT
1 ACTTATCAGATATGTTATTAGTAACAT
783643 ACTTATCAGATATGTTATTAGTAACAT
1 ACTTATCAGATATGTTATTAGTAACAT
783670 GGATCTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (27 bp):
ACTTATCAGATATGTTATTAGTAACAT
Found at i:787724 original size:23 final size:23
Alignment explanation
Indices: 787698--787745 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
787688 ATAAAGTACA
*
787698 ATAACATACTAGGTAACGCTTAT
1 ATAACATAATAGGTAACGCTTAT
** *
787721 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAACGCTTAT
787744 AT
1 AT
787746 TTACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAACGCTTAT
Found at i:788190 original size:23 final size:23
Alignment explanation
Indices: 788163--788235 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
788153 ATACTTTACA
* *
788163 ATATAAGCACTACCTATTATATT
1 ATATAAGCGCTACCTATTACATT
*
788186 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
788209 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
788232 ATAT
1 ATAT
788236 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:788547 original size:229 final size:229
Alignment explanation
Indices: 788262--788748 Score: 807
Period size: 229 Copynumber: 2.1 Consensus size: 229
788252 GAAAGTGTCC
* *
788262 ATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTT
1 ATAC-TTTTATAAAAATGATAGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTT
* * *
788327 AATAGTTTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACGCAAAAAATTATT
65 AATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAAAAATTATT
*
788392 TGATT-ATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAATATA
130 TGATTGATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATA
* *
788456 ATAATAAATATGTTTTCCATAGTGAAATAAATATGG
195 ATAATAAATATATTTT-CACAGTGAAATAAATATGG
*
788492 ATACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTA
1 ATACTTTTATAAAAATGATAGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTA
* *
788557 ATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTACACATAAAATTATTT
66 ATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAAAAATTATTT
*
788622 GATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAA
131 GATTGATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAA
*
788687 TAATAAATATATTTTCACAGTGAAATAAGTATGG
196 TAATAAATATATTTTCACAGTGAAATAAATATGG
* *
788721 ACACTTTTATAAAAAGGATAGATA-TTTT
1 ATACTTTTATAAAAATGATAGATACTTTT
788749 ACAATATAAC
Statistics
Matches: 240, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
228 4 0.02
229 160 0.67
230 76 0.32
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (229 bp):
ATACTTTTATAAAAATGATAGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTA
ATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAAAAATTATTT
GATTGATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAA
TAATAAATATATTTTCACAGTGAAATAAATATGG
Found at i:788879 original size:17 final size:17
Alignment explanation
Indices: 788857--788892 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
788847 GGATATATAC
788857 TTACCGATAACCAAAGT
1 TTACCGATAACCAAAGT
* *
788874 TTACCGGTTACCAAAGT
1 TTACCGATAACCAAAGT
788891 TT
1 TT
788893 TTAATAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (17 bp):
TTACCGATAACCAAAGT
Found at i:800100 original size:167 final size:169
Alignment explanation
Indices: 799824--800171 Score: 659
Period size: 167 Copynumber: 2.1 Consensus size: 169
799814 AATTTAAAGC
799824 CTGTGAAGGTAAAATTCATTGAAGACTAGCCCACAGGCACTGCATACAATTTTATAGCGACCCAC
1 CTGTGAAGGTAAAATTCATTGAAGACTAGCCCACAGGCACTGCATACAATTTTATAGCGACCCAC
799889 AATTCATTTTATACCTCAAGGTTAATTAATTGGGTTATTATTTGAAATATATAAATTGTTTTAT-
66 AATTCATTTTATACCTCAAGGTTAATTAATTGGGTTATTATTTGAAATATATAAATTGTTTTATA
799953 AATAATA-TTATATGATATTTAATTTTTTAAGTATATTT
131 AATAATATTTATATGATATTTAATTTTTTAAGTATATTT
799991 CTGTGAAGGTAAAATTCATTGAAGACTAGCCCACAGGCACTGCATACAATTTTATAGCGACCCAC
1 CTGTGAAGGTAAAATTCATTGAAGACTAGCCCACAGGCACTGCATACAATTTTATAGCGACCCAC
800056 AATTCATTTTATACCTCAAGGTTAATTAATTGGGTTATTATTTGAAATATATAAATTGTTTTATA
66 AATTCATTTTATACCTCAAGGTTAATTAATTGGGTTATTATTTGAAATATATAAATTGTTTTATA
800121 AATAATATTTATATGATATTTAATTTTTTAAGTATATTT
131 AATAATATTTATATGATATTTAATTTTTTAAGTATATTT
*
800160 AT-TGAA-GTAAAA
1 CTGTGAAGGTAAAA
800172 AATATATGGT
Statistics
Matches: 178, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
167 135 0.76
168 11 0.06
169 32 0.18
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (169 bp):
CTGTGAAGGTAAAATTCATTGAAGACTAGCCCACAGGCACTGCATACAATTTTATAGCGACCCAC
AATTCATTTTATACCTCAAGGTTAATTAATTGGGTTATTATTTGAAATATATAAATTGTTTTATA
AATAATATTTATATGATATTTAATTTTTTAAGTATATTT
Done.