Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008818.1 Hibiscus syriacus cultivar Beakdansim tig00111984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79115

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4295--4376
3
28.0
3
95
4
150
34
0
0
65
0.93
4295--4374
35
2.3
35
100
0
160
33
0
0
66
0.92
9244--9293
27
1.9
26
88
8
75
26
4
16
54
1.59
9797--9890
41
2.3
41
92
0
152
26
11
11
50
1.73
10046--10104
31
2.0
31
83
6
77
52
5
8
33
1.54
10124--10176
25
2.1
26
82
3
63
64
0
1
33
1.05
23188--23228
16
2.6
16
88
3
57
29
9
12
48
1.72
23979--24036
21
2.8
21
78
0
71
51
0
0
48
1.00
24181--24228
22
2.1
22
81
14
53
37
0
4
58
1.18
30918--30942
6
4.2
6
100
0
50
36
48
16
0
1.46
31637--31690
21
2.6
21
93
0
90
29
29
22
18
1.97
43087--43116
16
1.9
15
93
6
51
53
26
0
20
1.46
48117--48204
19
4.6
19
98
0
158
17
37
29
15
1.91
52865--52914
19
2.6
19
96
0
91
16
38
30
16
1.90
52889--52922
14
2.4
14
90
0
50
17
38
29
14
1.90
52859--52913
19
2.5
24
66
27
66
12
38
32
16
1.86
58681--58754
31
2.4
31
81
4
78
25
13
18
41
1.87
62988--63029
20
2.0
22
86
9
61
57
2
2
38
1.25
64352--64435
3
28.0
3
92
0
141
64
1
2
32
1.14
64750--65163
114
3.6
114
96
0
740
29
19
12
38
1.88
65847--66315
83
5.7
83
94
1
798
36
22
13
27
1.91
65842--66315
165
2.9
165
94
0
815
37
22
13
27
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66896--66920
11
2.3
11
100
0
50
0
0
8
92
0.40
67343--67412
7
9.7
7
81
15
81
0
18
0
81
0.69

Tables:   1

The End!