genome.fa.s8819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008819.1 Hibiscus syriacus cultivar Beakdansim tig00111986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42741

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6620--6663	20	2.1	21	87	4	63	59	2	2	36	1.23
7539--7586	22	2.4	19	77	16	51	0	22	8	68	1.16
8066--8166	3	33.7	3	87	0	148	61	0	3	34	1.15
8066--8165	27	3.7	27	95	0	173	61	0	4	35	1.15
9638--9685	18	2.6	19	83	12	73	10	18	0	70	1.15
9649--9681	9	3.8	9	88	8	50	12	15	0	72	1.12
9638--9688	17	2.8	17	80	19	59	11	19	0	68	1.20
10149--10186	20	1.9	20	94	0	67	36	7	23	31	1.84
10219--10274	21	2.7	21	97	0	103	26	10	30	32	1.90
16305--16337	16	2.1	16	94	0	57	39	27	0	33	1.57
18932--18964	16	2.1	16	94	0	57	39	27	0	33	1.57
19824--19916	21	4.6	20	77	4	96	38	18	23	19	1.93
19821--19916	41	2.3	41	94	0	165	39	17	22	19	1.92
19843--19977	41	3.3	41	82	6	132	37	20	20	20	1.94
19905--19999	20	4.7	20	80	2	91	34	24	17	23	1.96
20187--20230	22	2.0	22	95	0	79	20	45	15	18	1.85
20494--20531	20	1.9	20	88	0	58	13	15	21	50	1.78
21845--21889	18	2.5	18	88	0	63	26	40	15	17	1.90
22362--22428	20	3.4	20	81	2	73	38	23	22	14	1.92
22417--22474	14	3.9	14	79	16	71	48	25	17	8	1.75
22401--22491	32	2.8	33	94	3	166	47	23	18	10	1.80
22503--22613	32	3.4	32	97	1	204	9	18	24	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22503--22654	14	8.9	18	72	18	112	11	20	23	44	1.85
22598--22652	20	2.8	19	86	5	83	18	25	21	34	1.96
24516--24551	14	2.6	14	90	0	54	30	0	22	47	1.52
24668--24735	19	3.8	19	85	14	101	47	17	22	13	1.82
24754--24810	20	2.8	20	94	0	96	21	22	17	38	1.93
25175--25210	14	2.6	14	90	0	54	30	0	22	47	1.52
28866--28963	19	5.7	19	69	22	90	43	19	24	12	1.85
28866--28959	33	2.8	33	98	0	179	43	19	24	12	1.85
28959--29001	20	2.2	20	87	4	61	16	18	23	41	1.89
28987--29020	14	2.4	14	85	0	50	8	23	20	47	1.78
29142--29177	13	2.6	14	86	8	56	47	25	0	27	1.52
30527--30593	21	3.2	21	68	4	55	19	20	35	23	1.95
30527--30649	42	2.9	41	80	7	113	22	17	35	23	1.95
32289--32349	20	3.1	19	72	9	50	44	14	24	16	1.85
32314--32401	33	2.6	33	92	1	140	38	20	27	13	1.90
32411--32477	19	3.5	19	82	8	73	10	16	23	49	1.77
33000--33093	20	4.7	20	80	2	89	23	18	24	34	1.96
33021--33155	41	3.3	41	81	4	130	20	21	20	37	1.94
33082--33174	20	4.6	20	78	4	96	18	24	18	38	1.92
33082--33177	41	2.3	41	98	0	183	18	23	17	39	1.92
35142--35182	22	2.0	20	86	13	57	26	0	0	73	0.84
42477--42549	25	2.9	25	100	0	146	39	20	12	27	1.88

Tables:   1

The End!