Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000882.1 Hibiscus syriacus cultivar Beakdansim tig00001715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96027

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10253--10299
26
1.9
26
83
12
64
53
8
0
38
1.32
20227--20278
21
2.6
21
90
6
81
32
13
7
46
1.72
20991--21051
21
2.9
21
74
16
63
75
3
18
3
1.08
20989--21054
14
4.6
14
71
19
55
75
3
18
3
1.06
24337--24388
21
2.6
21
90
6
81
32
13
7
46
1.72
28134--28199
16
3.9
17
72
9
55
56
0
0
43
0.99
28134--28189
16
3.4
16
77
2
58
57
0
0
42
0.99
28130--28222
32
2.8
32
75
10
89
55
0
0
44
0.99
28143--28223
31
2.4
34
80
17
89
56
0
0
43
0.99
31587--31674
30
2.9
29
78
11
88
63
2
1
32
1.14
32547--32580
17
1.9
17
88
5
50
0
17
5
76
0.98
33042--33074
3
11.0
3
100
0
66
33
0
0
66
0.92
33233--34217
112
8.4
124
82
8
632
27
18
14
38
1.90
33569--34204
112
5.7
112
83
2
855
29
19
14
37
1.91
33569--34227
113
5.9
113
83
3
846
28
19
14
37
1.91
33568--34240
225
3.0
225
96
0
1238
28
19
15
37
1.91
34929--35265
114
3.0
113
91
2
523
31
18
13
35
1.90
35558--35606
16
2.8
17
78
12
55
46
6
10
36
1.63
35959--36013
13
4.4
13
79
6
60
5
10
0
83
0.79
35959--36014
16
3.5
15
77
17
60
5
12
0
82
0.83
43348--43379
15
2.1
15
94
0
55
46
6
18
28
1.73
47375--47453
30
2.8
29
77
11
83
63
1
1
34
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47417--47480
21
3.1
21
79
2
58
68
3
0
28
1.04
48473--48563
9
9.9
10
80
10
63
52
0
0
47
1.00
49286--49321
2
18.0
2
88
0
54
50
5
0
44
1.25
57808--57849
6
7.0
6
83
0
57
19
21
30
28
1.97
57808--57849
18
2.3
18
95
0
75
19
21
30
28
1.97
95727--95803
31
2.5
31
80
6
84
18
25
27
28
1.98

Tables:   1

The End!