genome.fa.s8820.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008820.1 Hibiscus syriacus cultivar Beakdansim tig00111988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121124

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1472--1514	17	2.5	17	84	0	50	27	39	16	16	1.90
1977--2043	20	3.4	20	81	2	73	38	23	22	14	1.92
2032--2089	14	3.9	14	79	16	71	48	25	17	8	1.75
2016--2106	32	2.8	33	94	3	166	47	23	18	10	1.80
2122--2210	14	5.9	14	76	21	90	8	17	25	47	1.77
2118--2226	32	3.4	32	96	2	193	10	19	24	45	1.81
2169--2268	19	5.5	19	75	12	77	14	21	22	43	1.87
2211--2265	20	2.8	19	86	5	83	18	25	21	34	1.96
4099--4134	14	2.6	14	90	0	54	30	0	22	47	1.52
4252--4317	19	3.7	19	84	15	97	46	18	21	13	1.83
4336--4392	20	2.8	20	94	0	96	21	22	17	38	1.93
4758--4792	14	2.6	14	90	4	54	31	0	22	45	1.53
6034--6092	24	2.5	24	82	0	73	28	16	18	35	1.93
8459--8551	32	2.8	33	96	1	170	43	19	24	12	1.86
8551--8593	20	2.2	20	87	4	61	16	18	23	41	1.89
8579--8612	14	2.4	14	85	0	50	8	23	20	47	1.78
8733--8769	14	2.6	14	91	0	65	45	24	0	29	1.53
10123--10189	21	3.2	21	68	4	55	19	20	35	23	1.95
10123--10245	42	2.9	41	80	7	113	22	17	35	23	1.95
11888--11948	20	3.1	19	72	9	50	44	14	24	16	1.85
11913--12000	33	2.6	33	92	1	140	38	20	27	13	1.90
12010--12075	19	3.5	19	81	6	71	10	16	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12595--12688	20	4.7	20	80	2	89	23	18	24	34	1.96
12616--12750	41	3.3	41	81	4	130	20	21	20	37	1.94
12677--12769	20	4.6	20	78	4	96	18	24	18	38	1.92
12677--12772	41	2.3	41	98	0	183	18	23	17	39	1.92
14753--14797	22	2.0	22	87	8	65	28	0	0	71	0.87
21570--21729	87	1.8	88	87	4	243	35	20	15	28	1.93
22178--22253	25	3.0	25	100	0	152	39	19	11	28	1.87
23521--23656	66	2.1	66	100	0	272	33	11	16	38	1.85
24410--24448	20	2.0	20	89	0	60	2	10	28	58	1.44
29455--29558	42	2.4	41	82	9	111	41	2	0	54	1.21
29500--29568	35	2.0	34	86	8	95	42	1	1	55	1.18
29512--29563	17	3.0	17	75	13	52	40	1	0	57	1.10
29533--29603	27	2.8	26	75	14	67	39	1	4	54	1.28
29542--29604	24	2.5	25	80	14	76	39	1	4	53	1.31
35495--35539	2	22.5	2	90	0	72	48	4	0	46	1.22
35756--35838	28	3.0	28	78	3	87	39	19	20	20	1.92
38296--38452	2	82.5	2	76	14	109	48	3	0	47	1.22
38290--38507	76	2.9	75	80	12	200	47	5	1	45	1.33
38365--38418	9	5.9	9	82	2	63	44	1	1	51	1.22
40392--40440	24	2.0	24	96	0	89	42	14	10	32	1.79
40483--40523	19	2.2	19	100	0	82	39	4	31	24	1.76
40934--41142	74	2.8	73	79	5	206	45	5	14	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40934--41168	74	3.2	74	77	6	192	43	6	14	36	1.70
41253--41434	71	2.6	69	80	5	213	42	11	10	34	1.76
43471--43534	32	2.0	32	96	0	119	37	10	9	42	1.73
44137--44197	32	1.9	32	89	0	95	34	32	0	32	1.58
44468--44554	34	2.5	33	90	7	138	60	0	0	39	0.97
55083--55123	22	1.9	22	85	5	57	41	7	4	46	1.53
60339--60401	2	31.5	2	100	0	126	50	0	49	0	1.00
65537--65568	15	2.1	15	94	0	55	34	0	0	65	0.93
74891--74926	7	5.0	7	96	3	63	58	27	0	13	1.36
76079--76142	29	2.2	30	80	5	76	34	23	4	37	1.76
78061--78096	18	2.0	18	89	10	56	25	11	33	30	1.90
83091--83159	34	2.0	34	100	0	138	28	15	11	43	1.82
85452--85651	54	3.7	54	81	4	242	31	20	18	29	1.96
85455--85651	107	1.8	108	84	1	270	31	20	18	28	1.97
85470--85679	107	2.0	108	79	2	235	30	20	18	30	1.96
85754--85939	45	4.2	45	88	0	275	43	12	21	22	1.86
91935--92489	36	14.7	36	82	10	576	44	4	7	43	1.53
91935--92491	77	7.4	74	85	7	619	44	4	7	43	1.53
92534--92567	11	3.0	12	91	8	54	32	0	0	67	0.91
96050--96078	13	2.1	14	93	6	51	27	6	20	44	1.77
96239--96269	2	15.5	2	100	0	62	48	0	0	51	1.00
99385--99458	24	3.1	24	94	3	123	36	13	9	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104777--104837	18	3.5	17	77	6	68	39	14	6	39	1.72
107337--107396	27	2.1	28	93	6	104	26	16	3	53	1.59
107801--107870	10	6.7	10	70	15	52	31	8	0	60	1.27
111350--111384	17	2.1	17	88	0	52	28	0	0	71	0.86
112832--112892	31	2.0	31	90	0	95	36	8	9	45	1.67
120613--120652	19	2.1	19	95	0	71	42	15	17	25	1.88
120632--120693	34	1.9	31	84	12	81	41	16	19	22	1.89

Tables:   1

The End!