Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008825.1 Hibiscus syriacus cultivar Beakdansim tig00111997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130913

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1157--1234
40
2.0
39
97
2
147
43
14
16
25
1.85
4907--4946
20
1.9
20
85
10
53
32
7
32
27
1.85
4995--5077
42
2.0
42
100
0
166
43
13
16
26
1.85
5193--5228
15
2.4
15
90
0
54
50
5
0
44
1.25
11282--11327
24
2.0
23
86
4
65
8
13
21
56
1.63
11350--11374
11
2.3
11
100
0
50
16
36
8
40
1.77
21269--21380
35
3.2
35
82
2
136
32
3
35
28
1.74
27398--27452
23
2.3
25
84
6
78
60
12
16
10
1.60
30203--30232
13
2.4
13
94
5
53
43
0
30
26
1.55
35455--35499
23
2.0
23
90
0
72
60
15
13
11
1.60
39725--39777
23
2.4
22
84
6
79
64
13
13
9
1.50
48772--48819
26
2.0
23
84
12
60
75
8
16
0
1.04
48843--48888
14
3.4
14
79
8
51
78
2
17
2
0.96
60114--60222
49
2.2
49
85
6
148
38
14
17
29
1.89
63856--63906
19
2.6
20
87
3
68
45
5
15
33
1.71
64782--64841
30
2.0
31
83
9
79
51
10
10
28
1.67
65876--65956
24
3.4
24
75
3
74
27
17
22
33
1.96
67517--67552
17
2.1
17
89
0
54
72
0
13
13
1.13
68910--68969
30
2.0
31
86
3
86
53
10
8
28
1.63
69083--69373
150
2.0
146
95
4
530
34
13
18
34
1.90
70126--70182
24
2.4
24
85
5
71
28
21
12
38
1.89
70141--70187
24
2.0
24
91
0
76
25
19
14
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70149--70203
24
2.3
24
83
0
65
30
18
18
32
1.95
72140--72187
19
2.5
20
86
3
62
45
6
12
35
1.67
72554--72584
10
3.1
10
100
0
62
19
51
9
19
1.74
73087--73145
30
2.0
30
83
6
75
52
10
8
28
1.64
75574--75679
49
2.1
49
82
6
133
36
14
19
29
1.91
75685--75791
56
2.0
53
89
8
164
42
8
19
28
1.80
88375--88399
8
3.1
8
100
0
50
76
0
24
0
0.80
88358--88409
16
3.1
16
81
13
52
75
3
21
0
0.97
92665--92704
19
2.0
20
86
13
57
22
10
0
67
1.20
95955--96000
15
2.9
16
81
12
51
58
0
30
10
1.32
102681--102705
6
4.2
6
100
0
50
0
16
0
84
0.63
104876--104926
19
2.6
20
87
3
68
45
7
13
33
1.73
105804--105863
30
2.0
31
86
3
86
53
10
8
28
1.63
106897--106978
24
3.4
24
76
3
76
26
18
21
32
1.97
108990--109041
19
2.6
21
87
6
72
46
5
13
34
1.67
109939--109998
30
2.0
31
86
3
86
53
10
8
28
1.63
111017--111073
24
2.4
24
85
5
71
28
21
12
38
1.89
111032--111078
24
2.0
24
91
0
76
25
19
14
40
1.90
111040--111094
24
2.3
24
83
0
65
32
18
16
32
1.93
113113--113163
19
2.6
20
87
3
68
45
5
13
35
1.68
116672--116778
56
2.0
53
87
8
155
42
7
19
29
1.79

Tables:   1

The End!