Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008826.1 Hibiscus syriacus cultivar Beakdansim tig00112000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3884024
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 18
Found at i:3229481 original size:21 final size:21
Alignment explanation
Indices: 3229455--3229533 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
3229445 TTTAAGGCAC
3229455 AAGGGATCGATCCTTTTACCA
1 AAGGGATCGATCCTTTTACCA
* **
3229476 AAGGGATCGATCATTTT-TTA
1 AAGGGATCGATCCTTTTACCA
*** * *
3229496 AAGATTTCGATCGTTATACCA
1 AAGGGATCGATCCTTTTACCA
*
3229517 AAGGGTTCGATCCTTTT
1 AAGGGATCGATCCTTTT
3229534 TTGGGAAGGG
Statistics
Matches: 43, Mismatches: 14, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
20 13 0.30
21 30 0.70
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (21 bp):
AAGGGATCGATCCTTTTACCA
Found at i:3236474 original size:15 final size:15
Alignment explanation
Indices: 3236457--3236486 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
3236447 TATATATAGT
3236457 AAAATATTAAATATTA
1 AAAATA-TAAATATTA
3236473 AAAATATAAATATT
1 AAAATATAAATATT
3236487 TTAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAATATAAATATTA
Found at i:3236492 original size:16 final size:16
Alignment explanation
Indices: 3236456--3236493 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
3236446 TTATATATAG
3236456 TAAAATATTAAATATT
1 TAAAATATTAAATATT
*
3236472 AAAAATA-TAAATATTT
1 TAAAATATTAAATA-TT
3236488 TAAAAT
1 TAAAAT
3236494 TCTCAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAATATTAAATATT
Found at i:3239060 original size:21 final size:21
Alignment explanation
Indices: 3239005--3239063 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
3238995 TGATATTATC
3239005 CTAACAAATATTTCTTCTCTGCT
1 CTAA-AAAT-TTTCTTCTCTGCT
* * *
3239028 CTCAAAGTTTTCTTCTCTTCT
1 CTAAAAATTTTCTTCTCTGCT
3239049 -TAAAAATGTTTCTTC
1 CTAAAAAT-TTTCTTC
3239064 AAAGTTTTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 5 0.17
21 19 0.63
22 3 0.10
23 3 0.10
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.47
Consensus pattern (21 bp):
CTAAAAATTTTCTTCTCTGCT
Found at i:3239653 original size:21 final size:21
Alignment explanation
Indices: 3239627--3239676 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 21
3239617 AAAGATATTA
*
3239627 AAATAATAAAAGCGATTAAA-T
1 AAATAATAAAA-CAATTAAAGT
3239648 AAAT-A-AAAACAATTAAAGT
1 AAATAATAAAACAATTAAAGT
3239667 AAA-AATAAAA
1 AAATAATAAAA
3239677 AGATGAAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 7 0.28
19 9 0.36
20 5 0.20
21 4 0.16
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.20
Consensus pattern (21 bp):
AAATAATAAAACAATTAAAGT
Found at i:3239662 original size:18 final size:18
Alignment explanation
Indices: 3239627--3239669 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
3239617 AAAGATATTA
* *
3239627 AAAT-AATAAAAGCGATT
1 AAATAAATAAAAACAATT
3239644 AAATAAATAAAAACAATT
1 AAATAAATAAAAACAATT
3239662 AAAGTAAA
1 AAA-TAAA
3239670 AATAAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 4 0.18
18 14 0.64
19 4 0.18
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (18 bp):
AAATAAATAAAAACAATT
Found at i:3244250 original size:7 final size:6
Alignment explanation
Indices: 3244232--3244273 Score: 66
Period size: 6 Copynumber: 6.7 Consensus size: 6
3244222 TGCTTGATTG
3244232 AATAAA AATAAA AAGTAAA AATAAA AAGTAAA AATAAA AATA
1 AATAAA AATAAA AA-TAAA AATAAA AA-TAAA AATAAA AATA
3244274 TAACGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 22 0.65
7 12 0.35
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:3244252 original size:13 final size:13
Alignment explanation
Indices: 3244234--3244271 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
3244224 CTTGATTGAA
3244234 TAAAAATAAAAAG
1 TAAAAATAAAAAG
3244247 TAAAAATAAAAAG
1 TAAAAATAAAAAG
3244260 TAAAAATAAAAA
1 TAAAAATAAAAA
3244272 TATAACGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAG
Found at i:3244256 original size:19 final size:19
Alignment explanation
Indices: 3244232--3244273 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
3244222 TGCTTGATTG
3244232 AATAAAAATAAAAAGTAAA
1 AATAAAAATAAAAAGTAAA
3244251 AATAAAAAGTAAAAA-TAAA
1 AATAAAAA-TAAAAAGTAAA
3244270 AATA
1 AATA
3244274 TAACGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (19 bp):
AATAAAAATAAAAAGTAAA
Found at i:3244283 original size:19 final size:20
Alignment explanation
Indices: 3244232--3244284 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 20
3244222 TGCTTGATTG
*
3244232 AATAAAAA-TAAAAAGTAAA
1 AATAAAAAGGAAAAAGTAAA
*
3244251 AATAAAAAGTAAAAA-TAAA
1 AATAAAAAGGAAAAAGTAAA
* *
3244270 AATATAACGGAAAAA
1 AATAAAAAGGAAAAA
3244285 CAATGGGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 24 0.80
20 6 0.20
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (20 bp):
AATAAAAAGGAAAAAGTAAA
Found at i:3249787 original size:18 final size:18
Alignment explanation
Indices: 3249752--3249794 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
3249742 AAAGATATTA
**
3249752 AAAT-AATAAAAGTGATT
1 AAATAAATAAAAGCAATT
3249769 AAATAAATAAAAGCAATT
1 AAATAAATAAAAGCAATT
3249787 AAAGTAAA
1 AAA-TAAA
3249795 AATAAGAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 4 0.18
18 14 0.64
19 4 0.18
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.23
Consensus pattern (18 bp):
AAATAAATAAAAGCAATT
Found at i:3252058 original size:14 final size:15
Alignment explanation
Indices: 3252032--3252061 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
3252022 GCCACTCTAC
3252032 TTTTGGTTTTTTCTG
1 TTTTGGTTTTTTCTG
3252047 TTTTGG-TTTTTCTG
1 TTTTGGTTTTTTCTG
3252061 T
1 T
3252062 GTGCACGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.00, C:0.07, G:0.20, T:0.73
Consensus pattern (15 bp):
TTTTGGTTTTTTCTG
Found at i:3253257 original size:18 final size:19
Alignment explanation
Indices: 3253222--3253258 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
3253212 CACGGAATGT
3253222 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
3253242 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
3253259 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:3254485 original size:18 final size:19
Alignment explanation
Indices: 3254462--3254504 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
3254452 CAGTAATCCT
3254462 ATTCC-CTGGTAATCTTAC
1 ATTCCACTGGTAATCTTAC
3254480 ATTCCCACTGGTAATCTTAC
1 ATT-CCACTGGTAATCTTAC
3254500 ATTCC
1 ATTCC
3254505 GTGAACCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.13
19 4 0.17
20 16 0.70
ACGTcount: A:0.23, C:0.30, G:0.09, T:0.37
Consensus pattern (19 bp):
ATTCCACTGGTAATCTTAC
Found at i:3254492 original size:20 final size:20
Alignment explanation
Indices: 3254467--3254504 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
3254457 ATCCTATTCC
3254467 CTGGTAATCTTACATTCCCA
1 CTGGTAATCTTACATTCCCA
3254487 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
3254505 GTGAACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.37
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:3255375 original size:245 final size:243
Alignment explanation
Indices: 3254899--3255382 Score: 697
Period size: 245 Copynumber: 2.0 Consensus size: 243
3254889 ATTTTTAGCA
* * *
3254899 AAAATTTTACTATTTTTTTCAATTTAGTCTATCAATTTTATATTTTATTCAATTTGATCTTTCAA
1 AAAATTTTACTACTTTTTTCAATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTCAA
** *
3254964 CTGTATTTTTTTACAAATTAATTATTCTTGTCAATTCTTTGACTCATTTATACTCTCATCAATAC
66 CTGTATTTTTTTACAAATTAATTATTCTCATCAATTCTTTGACTCATTTATACTCTAATCAATAC
*
3255029 TTTATCATCAAAATATTCTTTTTAAAAAAATGAAATTATAAATATATTTTATAATTTTAGATAAC
131 TTTATCATCAAAATA-TCTTTTTAAAAAAATAAAATTATAAATATATTTTATAATTTTAGATAAC
* * *
3255094 ATTTGAATTATTAAATAACATTACAATGTGAAAAGGAATATAAAGAAAT
195 ATTTGAATTATTAAAGAACATCACAATATGAAAAGGAATATAAAGAAAT
**
3255143 AAAATTTTACT-CTTTTTT-AATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTTGA
1 AAAATTTTACTACTTTTTTCAATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTCAA
* * * *
3255206 CTGTACTTTTTTTTTTATAAATTCATTCTTCTCATCAATTCTTTGACTCCTTTATACTCTAATCA
66 CTGTA----TTTTTTTACAAATTAATTATTCTCATCAATTCTTTGACTCATTTATACTCTAATCA
* *
3255271 ATATTTTATCATCAAAATA-CTTTTTCAACAAAATAAAATTATAAATATATTTTATAATTTTAGA
127 ATACTTTATCATCAAAATATCTTTTT-AAAAAAATAAAATTATAAATATATTTTATAATTTTAGA
* *
3255335 TAACATTTG-ATTAATTGAAGAACATCATAATATGAAAAGGAATATAAA
191 TAACATTTGAATT-ATTAAAGAACATCACAATATGAAAAGGAATATAAA
3255383 AAAAAATATG
Statistics
Matches: 214, Mismatches: 20, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
242 46 0.21
243 6 0.03
244 20 0.09
245 75 0.35
246 67 0.31
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (243 bp):
AAAATTTTACTACTTTTTTCAATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTCAA
CTGTATTTTTTTACAAATTAATTATTCTCATCAATTCTTTGACTCATTTATACTCTAATCAATAC
TTTATCATCAAAATATCTTTTTAAAAAAATAAAATTATAAATATATTTTATAATTTTAGATAACA
TTTGAATTATTAAAGAACATCACAATATGAAAAGGAATATAAAGAAAT
Found at i:3256207 original size:153 final size:153
Alignment explanation
Indices: 3256016--3256473 Score: 862
Period size: 153 Copynumber: 3.0 Consensus size: 153
3256006 GAGGCATGGC
3256016 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
1 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
* *
3256081 TAAGCAAGAAAGCAAGGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
66 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
3256146 ATGCATATGGAGTGGGGATTGGA
131 ATGCATATGGAGTGGGGATTGGA
*
3256169 GTGTTCCACCACTTCTTTGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
1 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
*
3256234 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAAGAATTAGTACGTAGCCATGACAGC
66 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
3256299 ATGCATATGGAGTGGGGATTGGA
131 ATGCATATGGAGTGGGGATTGGA
*
3256322 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGCGCATGTAGCCGACG
1 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
*
3256387 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACATC
66 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
3256452 ATGCATATGGAGTGGGGATTGG
131 ATGCATATGGAGTGGGGATTGG
3256474 GATGGACATG
Statistics
Matches: 297, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 297 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (153 bp):
GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
ATGCATATGGAGTGGGGATTGGA
Found at i:3257051 original size:4 final size:4
Alignment explanation
Indices: 3257044--3257213 Score: 331
Period size: 4 Copynumber: 42.5 Consensus size: 4
3257034 TTACTTGATT
3257044 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3257092 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3257140 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TATA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3257188 TGTA TGTA TGTA TGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TG
3257214 CATACATACA
Statistics
Matches: 164, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
4 164 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:3257221 original size:4 final size:4
Alignment explanation
Indices: 3257214--3257847 Score: 895
Period size: 4 Copynumber: 162.5 Consensus size: 4
3257204 TGTATGTATG
* * * * *
3257214 CATA CATA CATA TACA CATA CAAA CACA CATA CATA CACA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * *
3257262 CACA CATA CAAA CACA CACA CATA CATC CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * *
3257310 CATA CATA CATG CATG CATG CATG CATG CATG CATG CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3257358 CATA CA-A CATA CATA TATA CATA CACA CATA CATA CATA -ATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * * *
3257404 CATA CACA AATG CATA CACA CATA CACA CACA CATA CACA CACA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3257452 CACA CACA CATA CATA CATA CATA CATA C--A CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257498 CATA CAT- -ATA CATA CATA CATA CATA CAT- -ATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257542 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257590 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257638 CATA CATA CATA CATA CATA CATA CATA -ATA CATA CATA CATA C--A
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257683 CATA CATA CATA CATA CAT- -ATA CATA CATA CATA -ATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257728 CATA CATA CATA -ATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257775 CATA CATA CA-A CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3257822 CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CA
3257848 GTATGCTTGT
Statistics
Matches: 578, Mismatches: 36, Indels: 32
0.89 0.06 0.05
Matches are distributed among these distances:
2 10 0.02
3 18 0.03
4 550 0.95
ACGTcount: A:0.50, C:0.27, G:0.01, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:3257432 original size:2 final size:2
Alignment explanation
Indices: 3257419--3257461 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
3257409 ACAAATGCAT
* * *
3257419 AC AC AC AT AC AC AC AC AC AT AC AC AC AC AC AT AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
3257461 A
1 A
3257462 TACATACATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.42, G:0.00, T:0.07
Consensus pattern (2 bp):
AC
Found at i:3257862 original size:4 final size:4
Alignment explanation
Indices: 3257855--3261209 Score: 4195
Period size: 4 Copynumber: 841.2 Consensus size: 4
3257845 ACAGTATGCT
* * * *
3257855 TGTA TGTA TGCA TGTA TGTA TGCA TGCA TGCA TGTA TGCT- TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-TA TGTA TGTA
3257903 TGT- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3257950 TGTA TGTA TGTA TGTA TGTA TGTA TGTAA TGTA TATA TGTA --TA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT-A TGTA TGTA TGTA TGTA TGTA
*
3257997 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
3258045 TGTA TGCA TGTA TGTA TGTA TTGTA TGTA TGCA TGCATA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA -TGTA TGTA TGTA TG--TA TGTA TGTA TGTA
3258096 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258144 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3258192 TGTA TGTA TGTA TGCA TGTA TGTA TGTA TGCA TGTA TGTA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258240 TGTA TGCT- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TG-TA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258288 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
3258336 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
3258384 TGTA TGCA TGTA TGTA TCTA TGTA TGCA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3258432 TGTA TGTA TGTA TGCA TGTA TGCA TGTA TGTA TGCA TGTA TGTA TCTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258480 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258528 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258576 TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258623 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258671 TGTA TGTA TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258717 TGTA TG-A TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258764 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258812 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258860 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258908 TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3258955 TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA T-TA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3259000 TGCA TGTA TGCA TGTA TGCA TGTA TGTA TGTA TGCA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * * * *
3259048 TGTA TGCA TGCA TGCA TGTA TGCA TGTA TGCA TGCA TGCA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259096 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-TA TGTA TGTA TGTA TGTA
3259145 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259193 TGTA TGTA TGTA TGTA TG-- TGTA TGTA -GTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259238 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259286 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259334 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259382 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259430 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259478 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259526 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259574 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259622 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3259670 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * *
3259718 TGTA TATA TGTA TGTG TGTA TGTA TGTG TGTG TGTA TGTG TGAA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3259766 TTTG TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGTA TGTG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3259814 TGTA TGTA TGTA TGTA TG-- TGTG TGTA TGTG TGTA TGTA TGTG TGTG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3259860 TGTA TGTG TGTA TGCA TTTG TGTA TGTA TGTA TGTA TGTA TGT- TCGGGTCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T---GT-A
* * * * * * * * * *
3259911 -G-A TGAA AG-G TGTA TATT TTTC GGCT- TG-A -GTT TGGGTCA GGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TG-TA TGTA TGTA T--GT-A TGTA
* * * * * * * * ***
3259953 GAGGA TTTA T-AA T-TT TCGGA TCGGGA TG-A -GTA -GACCA AAAA T-TCA
1 -TGTA TGTA TGTA TGTA T-GTA T--GTA TGTA TGTA TG--TA TGTA TGT-A
**** *** ** *** * * * * * * *
3259998 ACCC CCAA CTCAA CCCA TGCCCA TCCCTA AGTG GGGA TAATCA TG-A CT-TGA
1 TGTA TGTA -TGTA TGTA TG--TA T--GTA TGTA TGTA T-GT-A TGTA -TGT-A
* * * * ** **
3260049 -GT- TGAA TTGAA TTTA TAGT- TG-A TTTAAA CT-TA CCTA ACTA T-TA
1 TGTA TGTA -TGTA TGTA T-GTA TGTA TGT--A -TGTA TGTA TGTA TGTA
* * * * ** * * *
3260092 TAT- TAG-A TTTA -G-A AG-A TCTTA TCCCA CTTGAAA TATAA TTTAAA
1 TGTA T-GTA TGTA TGTA TGTA T-GTA T-GTA --TG-TA TGT-A TGT--A
* ** *** * *
3260136 CTTTAA AATA AAAA T-T- TTTA CT-TA CTTGATT TGTA TGTA TGTA TGTA
1 -TGT-A TGTA TGTA TGTA TGTA -TGTA --TG-TA TGTA TGTA TGTA TGTA
3260183 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3260231 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA --TA TATA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3260277 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TATA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3260325 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3260373 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3260421 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3260469 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TATA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3260517 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
3260565 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * * *
3260613 TGTG TGTG TGTA TGTG TGTA TGTA TGTG TGTG TATG TGTA TGCA T-T-
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3260659 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTG TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * *
3260707 TATA TGTA TGT- TGTA TGTA TGTA TGTA TGCA TGCA TGCA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
3260754 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGGA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * *
3260802 TGTG TGTG TGTT TGTA TGTG TGTA TGTA TGTG TGTA TGTA TGT- GGT-
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * *
3260848 TGTA TGTG TATA TGTA TGTG TGTA TTTA TGTG TGTA TGTA TATG TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
3260896 TGTA TGTG TGTA TGTA TGTG TGTA TGTG TGTA TGTA TGTA TGTG TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * *
3260944 TGTA TGTG TGTA TG-- TGTG TGTA TGTG TGTA TGTA TG-- TGTG TGTT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * *
3260988 TGTG TTTA TGCA TTTG TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
3261036 TGTA TGTA TGTA TGTG TGTA TGTA TATA TGTA TGT- TGTA TGTA TGTG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * *
3261083 TGTA TATA TGTA TATA TATA TGTA TGTA TGTG TGTA TGTG TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * *
3261131 TGTA TGTA TGTG TGTA TGTG TGTA TGTA TG-- TGTG TGTA TGTG TATG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
3261177 TGTG TGTA TGTA TGTA TGTA TATA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
3261210 AATAATTTTT
Statistics
Matches: 2988, Mismatches: 260, Indels: 206
0.87 0.08 0.06
Matches are distributed among these distances:
2 24 0.01
3 51 0.02
4 2840 0.95
5 43 0.01
6 23 0.01
7 7 0.00
ACGTcount: A:0.24, C:0.03, G:0.25, T:0.48
Consensus pattern (4 bp):
TGTA
Found at i:3260628 original size:6 final size:6
Alignment explanation
Indices: 3260609--3260654 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
3260599 TATGTATGTA
* * *
3260609 TGTATG TGTGTG TGTATG TGTGTA TGTATG TG--TG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
3260655 CATTTGTATG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
4 4 0.12
6 28 0.88
ACGTcount: A:0.13, C:0.00, G:0.37, T:0.50
Consensus pattern (6 bp):
TGTATG
Found at i:3266868 original size:19 final size:19
Alignment explanation
Indices: 3266844--3266944 Score: 103
Period size: 19 Copynumber: 5.3 Consensus size: 19
3266834 TGCATTGGGC
*
3266844 TATGAATTTGAAAATAAGT
1 TATGAATCTGAAAATAAGT
* *
3266863 TATGAATCTGACAATAAGC
1 TATGAATCTGAAAATAAGT
* *
3266882 TATGAGTCTAAAAATAAGT
1 TATGAATCTGAAAATAAGT
* *
3266901 TATGAATCTGGAAATAAAT
1 TATGAATCTGAAAATAAGT
* * * *
3266920 TCTGATTCAGAAAATAAAT
1 TATGAATCTGAAAATAAGT
3266939 TATGAA
1 TATGAA
3266945 ATGTTAAAGT
Statistics
Matches: 65, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 65 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.32
Consensus pattern (19 bp):
TATGAATCTGAAAATAAGT
Found at i:3267341 original size:15 final size:15
Alignment explanation
Indices: 3267321--3267351 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
3267311 ATGCCTCACT
3267321 AAGTAAATACTTAGC
1 AAGTAAATACTTAGC
3267336 AAGTAAATACTTAGC
1 AAGTAAATACTTAGC
3267351 A
1 A
3267352 TGTGATGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (15 bp):
AAGTAAATACTTAGC
Found at i:3275435 original size:20 final size:19
Alignment explanation
Indices: 3275398--3275458 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 19
3275388 GTATCGATCC
*
3275398 AAAATGAT-ATACCAGGTAA
1 AAAATGATAAAACC-GGTAA
3275417 AAATATGATAAAACCGGTAA
1 AAA-ATGATAAAACCGGTAA
3275437 CAAAATGATAAAACCGGTAA
1 -AAAATGATAAAACCGGTAA
3275457 AA
1 AA
3275459 CGTTACCGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
19 5 0.13
20 26 0.68
21 7 0.18
ACGTcount: A:0.56, C:0.11, G:0.15, T:0.18
Consensus pattern (19 bp):
AAAATGATAAAACCGGTAA
Found at i:3275536 original size:181 final size:182
Alignment explanation
Indices: 3275200--3275672 Score: 671
Period size: 181 Copynumber: 2.6 Consensus size: 182
3275190 GATCCAAATT
* * * * ** *
3275200 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAATCGGTATTGATATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * *
3275265 AAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTC-AGTATTTTAATATAAGGATCGACACTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGA-TACTTTAATATAAGGATCGACACTT
* * *
3275329 CGTGAATTTAAAAGAGAATCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
130 CGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
3275382 AAAAATGTATCGATCCAAAATGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
3275447 AAACCGGTAAAACGTTACCGGATATATTAAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
** *
3275511 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
3275563 AAAAATATATCGATCCACAACGATATAACATGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
3275628 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTT
3275673 CATAAGTACG
Statistics
Matches: 259, Mismatches: 31, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
181 165 0.64
182 93 0.36
183 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:3275641 original size:17 final size:19
Alignment explanation
Indices: 3275602--3275644 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
3275592 ATGTAAAAAT
3275602 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
3275622 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
3275639 ATGATA
1 ATGATA
3275645 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:3277884 original size:21 final size:21
Alignment explanation
Indices: 3277858--3277922 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
3277848 AAGACAATCA
* *
3277858 AGAGTCAAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
3277879 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
3277900 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
3277921 AG
1 AG
3277923 GCATAAGGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.43, C:0.11, G:0.29, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:3277998 original size:33 final size:33
Alignment explanation
Indices: 3277956--3278021 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
3277946 AAATCGATGG
*
3277956 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
3277989 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
3278022 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:3280307 original size:200 final size:200
Alignment explanation
Indices: 3279959--3280902 Score: 1457
Period size: 200 Copynumber: 4.8 Consensus size: 200
3279949 AATTTACAAT
3279959 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
3280024 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTGCAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
3280089 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
3280154 AATGA
196 AATGA
3280159 AT-GACAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACA
1 ATGGA-AAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACA
* **
3280223 TCAAAACCCAAAAGTATAATGTAATATATAATTTTTCAATCTAACCGGTACAAGTATACCGGTTT
65 TCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTT
*
3280288 TATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCT
130 TATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
3280353 GAATGA
195 GAATGA
*
3280359 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTATCGATCCCATAAACAT
1 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
3280424 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
3280489 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTACAG
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
3280554 AATGA
196 AATGA
* * *
3280559 ATGGAAAACAGGGTGCAACAATAAAGTGTCGATCC-----CAAAAA----C-AT--C--GAA-A-
1 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
** *
3280608 C----CCATA-AGTATAATGTAATAGGTAAGTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
3280668 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTTAGTTTGTGTCGATATTTTTGGTCCA
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACAC-TTTTGTAGTTTGTGTCGATATTTTTGGTCCA
3280733 GAATGA
195 GAATGA
* * * *
3280739 ATGGCAAATAGGGTGCAACAATAAAGTGTTGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
3280804 CGAAACCCATAAGTATAATGTAATAGGCAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * *
3280869 ATGAGAGAATTGGTATAAA-ATATGTATCGACACT
131 ATGAGAGAATAGGTCTAAATA-ATGTGTCGACACT
3280903 GTTTAATGTT
Statistics
Matches: 683, Mismatches: 36, Indels: 50
0.89 0.05 0.07
Matches are distributed among these distances:
179 84 0.12
180 70 0.10
184 1 0.00
185 6 0.01
186 2 0.00
188 1 0.00
189 1 0.00
190 4 0.01
191 1 0.00
192 1 0.00
194 2 0.00
195 6 0.01
196 1 0.00
199 2 0.00
200 419 0.61
201 82 0.12
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (200 bp):
ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:3280640 original size:179 final size:180
Alignment explanation
Indices: 3280402--3280773 Score: 638
Period size: 179 Copynumber: 2.1 Consensus size: 180
3280392 CCATATATAA
* * * *
3280402 AAAGTATCGATCCCATAAACATCGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCAAAAGTATAATGTAATAGGTAAGTTTTCAATCTAA
3280467 CCGGTACAAGTATACCAGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACAC-TTTTGTAGT
66 CCGGTACAAGTATACCAGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTGTAGT
3280531 TTGTGTCGATATTTTTGGTACAGAATGAATGGAAAACAGGGTGCAACAAT
131 TTGTGTCGATATTTTTGGTACAGAATGAATGGAAAACAGGGTGCAACAAT
*
3280581 AAAGTGTCGATCCCAAAAACATCGAAACCCATAAGTATAATGTAATAGGTAAGTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCAAAAGTATAATGTAATAGGTAAGTTTTCAATCTAA
* *
3280646 CCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTTAGT
66 CCGGTACAAGTATACCAGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTGTAGT
* * *
3280711 TTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAATAGGGTGCAACAAT
131 TTGTGTCGATATTTTTGGTACAGAATGAATGGAAAACAGGGTGCAACAAT
*
3280761 AAAGTGTTGATCC
1 AAAGTGTCGATCC
3280774 ATATATAAAA
Statistics
Matches: 181, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
179 114 0.63
180 67 0.37
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (180 bp):
AAAGTGTCGATCCCAAAAACATCGAAACCCAAAAGTATAATGTAATAGGTAAGTTTTCAATCTAA
CCGGTACAAGTATACCAGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTGTAGT
TTGTGTCGATATTTTTGGTACAGAATGAATGGAAAACAGGGTGCAACAAT
Found at i:3282407 original size:6 final size:6
Alignment explanation
Indices: 3282396--3282471 Score: 89
Period size: 6 Copynumber: 12.7 Consensus size: 6
3282386 CAAGCGGTCA
* * *
3282396 ATGAAG ATGAAG CTGAAG ATGAAG ATGACG ATGAAG ATGAAG ATGACG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * *
3282444 ATGATG ATGATG ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGA
3282472 TGATCCAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.41, C:0.04, G:0.33, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:3282475 original size:18 final size:18
Alignment explanation
Indices: 3282396--3282471 Score: 98
Period size: 18 Copynumber: 4.2 Consensus size: 18
3282386 CAAGCGGTCA
* * *
3282396 ATGAAGATGAAGCTGAAG
1 ATGAAGATGACGATGATG
*
3282414 ATGAAGATGACGATGAAG
1 ATGAAGATGACGATGATG
3282432 ATGAAGATGACGATGATG
1 ATGAAGATGACGATGATG
* *
3282450 ATGATGATGATGATGATG
1 ATGAAGATGACGATGATG
3282468 ATGA
1 ATGA
3282472 TGATCCAAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.41, C:0.04, G:0.33, T:0.22
Consensus pattern (18 bp):
ATGAAGATGACGATGATG
Found at i:3284028 original size:183 final size:183
Alignment explanation
Indices: 3283685--3285539 Score: 3417
Period size: 183 Copynumber: 10.1 Consensus size: 183
3283675 TAAAGTTTTC
* * *
3283685 ACACTTTTTAATATGGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTTT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
3283750 CAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAA
66 CAAAAAGTGTCGACATT---TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAA
3283813 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
3283869 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
3283934 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
3283999 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
3284052 ACACTTTTTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
3284117 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
3284182 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
3284235 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
3284300 CAAAGAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
3284365 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
3284418 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTAGAAGAAAAATGTGTTGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
3284483 CAAAAAGTGTCGACATTTACACATCGAAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
3284548 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
3284601 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
3284666 CAAAAAGTGTCAACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
3284731 AACCAGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
3284784 ACACTTTTTAATATTGTGTCGCTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
3284849 CAAAAAATGTCGACATTTACACGTCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
3284914 AACCGGTATAAATATACCGATTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
3284967 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTTGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
3285032 CAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGGTAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
3285097 AACTGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
3285150 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATATGTCGATACCTAGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
3285215 CAAAAAGTGTTGATATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
3285280 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
3285333 ACACTTTTTAATATTGTGTCGCTACTTTATGTCTAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
3285398 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
3285463 AACCGGTATAAATATACCGGTTTTATGAGTGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
3285516 ACAATTTTTAATATTGTGTCGGTA
1 ACACTTTTTAATATTGTGTCGGTA
3285540 ATTTTAAGTA
Statistics
Matches: 1621, Mismatches: 48, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
183 1544 0.95
184 74 0.05
186 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:3288036 original size:25 final size:25
Alignment explanation
Indices: 3288000--3288064 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
3287990 TTATCATTAA
*
3288000 ATTTAGGAATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
3288025 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
3288050 ATTTAGGTATGTACA
1 ATTTAGGTATGTACA
3288065 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:3288391 original size:22 final size:21
Alignment explanation
Indices: 3288348--3288391 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
3288338 ATTACATAAC
*
3288348 TTTAAAAAAGTATCGATCCTT
1 TTTAAAAAAGTATCGAACCTT
3288369 TTTATAAAAAGTAT-GAACACTT
1 TTTA-AAAAAGTATCGAAC-CTT
3288391 T
1 T
3288392 CAATATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (21 bp):
TTTAAAAAAGTATCGAACCTT
Found at i:3288440 original size:23 final size:23
Alignment explanation
Indices: 3288409--3288481 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
3288399 ATAGGTAAAA
*
3288409 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
3288432 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3288455 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3288478 ATAT
1 ATAT
3288482 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3288929 original size:23 final size:23
Alignment explanation
Indices: 3288898--3288970 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3288888 ATAGGTAAAA
*
3288898 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
3288921 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3288944 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3288967 ATAT
1 ATAT
3288971 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3288995 original size:46 final size:45
Alignment explanation
Indices: 3288898--3288995 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
3288888 ATAGGTAAAA
* * *
3288898 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATAGCTATCATTT
* *
3288944 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCATTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TAGCTATCATTT
*
3288990 TTATAA
1 ATATAA
3288996 AAATGTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATAGCTATCATTT
Found at i:3289079 original size:489 final size:489
Alignment explanation
Indices: 3288064--3291327 Score: 6044
Period size: 491 Copynumber: 6.7 Consensus size: 489
3288054 AGGTATGTAC
3288064 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
3288129 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
3288194 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
3288259 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
*
3288324 AAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
*
3288388 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
*
3288453 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
* *
3288518 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTATTTCACTGTGGAAAATATTAATTTAAGGTT
3288552 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
3288617 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
3288682 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
3288747 A-TTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATT-AAA
*
3288811 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATAGATCCTTTTTATAAAAAGTATGGAC
260 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
* *
3288876 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCG
325 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCG
*
3288941 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTA-TCATTTTTATAAAAATGTCCA
390 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTC-TTTTTATAAAAGTGTCCA
* *
3289005 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
454 TACTTATTTCACTGTGGAAAATATTAATTTAAGGTT
3289041 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
3289106 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
3289171 TTTGGTTAATATTATTAAATTTAAATTCTAAAAATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
3289236 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
3289301 AAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCCTTTTTAT-AAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
3289364 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
3289429 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
3289494 CTTATTTCACTGTGGAAAATATTAATTTAAGGTT
456 CTTATTTCACTGTGGAAAATATTAATTTAAGGTT
*
3289528 ATCATTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
3289593 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
3289658 TTTGGTTAATATTGTTAAATTTAAATTCTAAAAATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
3289723 ATTTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAA
196 A-TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATT-AA
3289788 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
259 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
3289853 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGC
324 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGC
3289918 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCA
389 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCA
3289983 TACTTATTTCACTGTGGAAAATATTAATTTAAGGTT
454 TACTTATTTCACTGTGGAAAATATTAATTTAAGGTT
3290019 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
3290084 GTTACG--ATATA-TATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
3290146 TTTGGTTAATATTGTTAAATTTAAATTCTAAA-ATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
3290210 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
3290275 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
3290340 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
3290405 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
3290470 CTTATTTCACTGTGGAAAATATTAATTTAAGGTT
456 CTTATTTCACTGTGGAAAATATTAATTTAAGGTT
3290504 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTTA
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTA
3290569 CGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTAT
65 CGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTAT
3290634 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
130 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
3290699 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATT-AA
*
3290764 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTGTTTATAAAAAGTATGGA
259 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
*
3290829 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATATGTAGC
324 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGC
*
3290894 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
389 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCA
3290959 TACTTATTTCACTGTGGAAAATATTAATTTAAGGTT
454 TACTTATTTCACTGTGGAAAATATTAATTTAAGGTT
* * ** *
3290995 ATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATTTAATGATTTATTTTTTTA
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTA
* * * *
3291060 TGTTACGGTATATATTATCATTAAATTAAAAAAAATAAACATATATATTACATATTTATTATTAT
65 CGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTAT
3291125 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
130 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
*
3291190 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAA
* * **
3291254 AAAATTGAAACATAAATTACATAAATTTAAAAAAAGTATCGATCTTTTTTATAAGAAAGTATAAA
260 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAA-AAAGTATGGA
3291319 CACTTTCAA
324 CACTTTCAA
3291328 CATATTATAA
Statistics
Matches: 2721, Mismatches: 39, Indels: 30
0.98 0.01 0.01
Matches are distributed among these distances:
485 290 0.11
486 74 0.03
487 454 0.17
488 397 0.15
489 591 0.22
490 191 0.07
491 724 0.27
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (489 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
CTTATTTCACTGTGGAAAATATTAATTTAAGGTT
Found at i:3289416 original size:23 final size:23
Alignment explanation
Indices: 3289385--3289457 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3289375 ATAGGTAAAA
* *
3289385 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
*
3289408 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3289431 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3289454 ATAT
1 ATAT
3289458 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3289907 original size:23 final size:23
Alignment explanation
Indices: 3289876--3289948 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3289866 ATAGGTAAAA
* *
3289876 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
*
3289899 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3289922 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3289945 ATAT
1 ATAT
3289949 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3290333 original size:976 final size:978
Alignment explanation
Indices: 3288064--3291327 Score: 6076
Period size: 976 Copynumber: 3.3 Consensus size: 978
3288054 AGGTATGTAC
3288064 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
3288129 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
3288194 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
3288259 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
3288324 AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAC
261 AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAC
*
3288389 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
326 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTT
*
3288454 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
391 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATAC
* *
3288519 TTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTA
456 TTATTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTA
3288584 GTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAC
521 GTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAC
3288649 AATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAA
586 AATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAA
3288714 TATTATTTTATAAAATATCAAAACAATCAAATAA-TTTTTGTGCAAATGAAATTATTAAATTAAT
651 TATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAAT
*
3288778 ATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAA
716 ATTGTAGGTGGAAGACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAA
*
3288843 AAAGTATAGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
781 AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
* *
3288908 ATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTG
846 ATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
* * *
3288973 TAAAGTATCTA-TCATTTTTATAAAAATGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAA
911 TAAAGTATCTATTC-TTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTAA
3289037 GGTT
975 GGTT
3289041 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
3289106 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
3289171 TTTGGTTAATATTATTAAATTTAAATTCTAAAAATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
3289236 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
3289301 AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCCTTTTTAT-AAAAGTATGGACAC
261 AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAC
3289365 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTT
326 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTT
3289430 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATAC
391 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATAC
*
3289495 TTATTTCACTGTGGAAAATATTAATTTAAGGTTATCATTTGAGTGAGTTTTAAGATATTAATTTA
456 TTATTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTA
3289560 GTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAC
521 GTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAC
3289625 AATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAA
586 AATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAA
*
3289690 AATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTTGTGCAAATGAAATTATTAAATTAA
651 TATTATTTTATAAAATATCAAAACAATCAAATAA-TTTTTTGTGCAAATGAAATTATTAAATTAA
3289755 TATTGTAGGTGGAAGACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAA
715 TATTGTAGGTGGAAGACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAA
3289820 AAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
780 AAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
3289885 AATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
845 AATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
3289950 GTAAAGTATCTATTCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTAA
910 GTAAAGTATCTATTCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTAA
3290015 GGTT
975 GGTT
3290019 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
3290084 GTTAC-G-ATATA-TATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
3290146 TTTGGTTAATATTGTTAAATTTAAATTCTAAA-ATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
3290210 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAGACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
3290275 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACA
3290340 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
325 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
3290405 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
390 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATA
3290470 CTTATTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
455 CTTATTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
3290535 AGTAATTATAGGCGTCTAATGATTTATTTTTTTACGTTACGATATATATTATTATTAAATTAAAA
520 AGTAATTATAGGCGTCTAATGATTTA-TTTTTTACGTTACGATATATATTATTATTAAATTAAAA
3290600 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
584 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
3290665 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
649 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
3290730 ATATTGTAGGTGGAAGACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAA
714 ATATTGTAGGTGGAAGACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAA
*
3290795 AAAAAGTATCGATCCTGTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
779 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
*
3290860 TAATAGGTAGCACTTATATAATGTAATATGTAGCGTTTATATAATGTAATAGGTAGTGCTTATAT
844 TAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATAT
*
3290925 TGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTA
909 TGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTA
3290990 AGGTT
974 AGGTT
* * ** *
3290995 ATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATTTAATGATTTATTTTTTTA
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTA
* * *
3291060 TGTTACGGTATATATTATCATTAAATTAAAAAAAATAAACATATATATTACATATTTATTATTAT
65 CGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTAT
3291125 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
130 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
3291190 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
* * *
3291254 AAAATTGAAACATAAATTACATAAATTTAAAAAAAGTATCGATCTTTTTTATAAGAAAGTATAAA
260 AAAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCCTTTTTATAA-AAAGTATGAA
3291319 CACTTTCAA
323 CACTTTCAA
3291328 CATATTATAA
Statistics
Matches: 2234, Mismatches: 41, Indels: 20
0.97 0.02 0.01
Matches are distributed among these distances:
974 124 0.06
975 105 0.05
976 947 0.42
977 453 0.20
978 354 0.16
979 7 0.00
980 135 0.06
981 109 0.05
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (978 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAC
TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTT
TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATAC
TTATTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTA
GTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAC
AATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAA
TATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAAT
ATTGTAGGTGGAAGACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAA
AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
ATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
TAAAGTATCTATTCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTAAG
GTT
Found at i:3290392 original size:23 final size:23
Alignment explanation
Indices: 3290361--3290433 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
3290351 ATAGGTAAAA
* *
3290361 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
*
3290384 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3290407 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3290430 ATAT
1 ATAT
3290434 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3290883 original size:23 final size:23
Alignment explanation
Indices: 3290852--3290924 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
3290842 ATAGGTAAAA
* *
3290852 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
* *
3290875 ATATAATGTAATATGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
3290898 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
3290921 ATAT
1 ATAT
3290925 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:3313449 original size:19 final size:19
Alignment explanation
Indices: 3313425--3313496 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 19
3313415 AGAAAATTTG
3313425 GTATCGATACCCAGGGGGA
1 GTATCGATACCCAGGGGGA
* *
3313444 GTATCGATACCATAGGAGATGA
1 GTATCGATACC-CAGG-G-GGA
*
3313466 GTACCGATACCCAAGGGGGA
1 GTATCGATACCC-AGGGGGA
*
3313486 GTATCGGTACC
1 GTATCGATACC
3313497 GTCTTGAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
19 11 0.26
20 14 0.33
21 2 0.05
22 15 0.36
ACGTcount: A:0.29, C:0.21, G:0.32, T:0.18
Consensus pattern (19 bp):
GTATCGATACCCAGGGGGA
Found at i:3316912 original size:13 final size:13
Alignment explanation
Indices: 3316894--3316918 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3316884 ATTTTAATAA
3316894 TTAAATAATATAT
1 TTAAATAATATAT
3316907 TTAAATAATATA
1 TTAAATAATATA
3316919 AAATACAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAATAATATAT
Found at i:3320780 original size:24 final size:24
Alignment explanation
Indices: 3320753--3320802 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
3320743 TGGTGGTTGA
3320753 TTTAATGGTTGT-TTGAACTTTATT
1 TTTAATGG-TGTATTGAACTTTATT
* *
3320777 TTTAATGGTGTATTTAAGTTTATT
1 TTTAATGGTGTATTGAACTTTATT
3320801 TT
1 TT
3320803 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (24 bp):
TTTAATGGTGTATTGAACTTTATT
Found at i:3327696 original size:19 final size:21
Alignment explanation
Indices: 3327659--3327701 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
3327649 TAACTTTTTA
*
3327659 TTTTCTCTTTCTTTATTAA-T
1 TTTTCTCTTTCATTATTAACT
3327679 TTTTCTCTTTCATT-TTAACT
1 TTTTCTCTTTCATTATTAACT
3327699 TTT
1 TTT
3327702 ACTTTTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTCTCTTTCATTATTAACT
Found at i:3330183 original size:24 final size:24
Alignment explanation
Indices: 3330156--3330205 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
3330146 TGGTGGTTGA
3330156 TTTAATGGTTGT-TTGAACTTTATT
1 TTTAATGG-TGTATTGAACTTTATT
* *
3330180 TTTAATGGTGTATTTAAGTTTATT
1 TTTAATGGTGTATTGAACTTTATT
3330204 TT
1 TT
3330206 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (24 bp):
TTTAATGGTGTATTGAACTTTATT
Found at i:3335422 original size:21 final size:23
Alignment explanation
Indices: 3335387--3335429 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
3335377 AACGGAGTCG
3335387 AGAGCAAATATTTCAG-CCAAAA
1 AGAGCAAATATTTCAGACCAAAA
*
3335409 AGAGCCAAT-TTTCAGACCAAA
1 AGAGCAAATATTTCAGACCAAA
3335430 TTCTAACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.47, C:0.21, G:0.14, T:0.19
Consensus pattern (23 bp):
AGAGCAAATATTTCAGACCAAAA
Found at i:3335974 original size:21 final size:23
Alignment explanation
Indices: 3335939--3335981 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
3335929 AACGGAGTCG
3335939 AGAGCAAATATTTCAG-CCAAAA
1 AGAGCAAATATTTCAGACCAAAA
*
3335961 AGAGCCAAT-TTTCAGACCAAA
1 AGAGCAAATATTTCAGACCAAA
3335982 TTCTAACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.47, C:0.21, G:0.14, T:0.19
Consensus pattern (23 bp):
AGAGCAAATATTTCAGACCAAAA
Found at i:3336007 original size:552 final size:553
Alignment explanation
Indices: 3334964--3336072 Score: 2193
Period size: 552 Copynumber: 2.0 Consensus size: 553
3334954 CTTTTTCAAT
3334964 TGGACAGAAAGTTCTTTTGTTTAATTCAAAGTTCAAAATTTTTGTAGAAAACCTTAAGTCGAAAT
1 TGGACAGAAAGTTCTTTTGTTTAATTCAAAGTTCAAAATTTTTGTAGAAAACCTTAAGTCGAAAT
3335029 GGCTAGGACCCTTGATAGTGATTGATGTTTTTCTTCATTAACCTGTAGAAGTAGAAGATAATTTC
66 GGCTAGGACCCTTGATAGTGATTGATGTTTTTCTTCATTAACCTGTAGAAGTAGAAGATAATTTC
3335094 GGTGCTTGATTGAAAGTAAATGGACAAAGACTTAAACCTTTTTATGAGAATGCATCAGTTAAATT
131 GGTGCTTGATTGAAAGTAAATGGACAAAGACTTAAACCTTTTTATGAGAATGCATCAGTTAAATT
3335159 AATTGAAGAAATTCATTTGGAGAAACTGAGAGCTTAAAAAAAGGTCGTCGAGCTTAAAAGACGTT
196 AATTGAAGAAATTCATTTGGAGAAACTGAGAGCTTAAAAAAAGGTCGTCGAGCTTAAAAGACGTT
3335224 AAACAAAGTACTTGTGGGAGCCAACCCATTATTTATTATATTTCTTTAATTTTCTTGCGATTTAA
261 AAACAAAGTACTTGTGGGAGCCAACCCATTATTTATTATATTTCTTTAATTTTCTTGCGATTTAA
3335289 ACTTTGTTCTTTAGGTTTATTCATTGTTTCACTTATACTAATTTTTTGTTTTTATTTTCAGGTAC
326 ACTTTGTTCTTTAGGTTTATTCATTGTTTCACTTATACTAATTTTTTGTTTTTATTTTCAGGTAC
3335354 GTGATGCATTTTATTGAACTTAGAACGGAGTCGAGAGCAAATATTTCAGCCAAAAAGAGCCAATT
391 GTGATGCATTTTATTGAACTTAGAACGGAGTCGAGAGCAAATATTTCAGCCAAAAAGAGCCAATT
3335419 TTCAGACCAAATTCTAACAACAGTCGTGCAACTTTACTTACAGCATTAAA-GTGTCGTTTAACAA
456 TTCAGACCAAATTCTAACAACAGTCGTGCAACTTTACTTACAGCATTAAAGGTGTCGTTTAACAA
3335483 AACGGCTCATGTTAGTACACCTCCAAATAAGAG
521 AACGGCTCATGTTAGTACACCTCCAAATAAGAG
3335516 TGGACAGAAAGTTCTTTTGTTTAATTCAAAGTTCAAAATTTTTGTAGAAAACCTTAAGTCGAAAT
1 TGGACAGAAAGTTCTTTTGTTTAATTCAAAGTTCAAAATTTTTGTAGAAAACCTTAAGTCGAAAT
3335581 GGCTAGGACCCTTGATAGTGATTGATGTTTTTCTTCATTAACCTGTAGAAGTAGAAGATAATTTC
66 GGCTAGGACCCTTGATAGTGATTGATGTTTTTCTTCATTAACCTGTAGAAGTAGAAGATAATTTC
3335646 GGTGCTTGATTGAAAGTAAATGGACAAAGACTTAAACCTTTTTATGAGAATGCATCAGTTAAATT
131 GGTGCTTGATTGAAAGTAAATGGACAAAGACTTAAACCTTTTTATGAGAATGCATCAGTTAAATT
3335711 AATTGAAGAAATTCATTTGGAGAAACTGAGAGCTTAAAAAAAGGTCGTCGAGCTTAAAAGACGTT
196 AATTGAAGAAATTCATTTGGAGAAACTGAGAGCTTAAAAAAAGGTCGTCGAGCTTAAAAGACGTT
3335776 AAACAAAGTACTTGTGGGAGCCAACCCATTATTTATTATATTTCTTTAATTTTCTTGCGATTTAA
261 AAACAAAGTACTTGTGGGAGCCAACCCATTATTTATTATATTTCTTTAATTTTCTTGCGATTTAA
*
3335841 ACTTTGTTCTTTAGTTTTATTCATTGTTTCACTTATACTAATTTTTTGTTTTTATTTTCAGGTAC
326 ACTTTGTTCTTTAGGTTTATTCATTGTTTCACTTATACTAATTTTTTGTTTTTATTTTCAGGTAC
3335906 GTGATGCATTTTATTGAACTTAGAACGGAGTCGAGAGCAAATATTTCAGCCAAAAAGAGCCAATT
391 GTGATGCATTTTATTGAACTTAGAACGGAGTCGAGAGCAAATATTTCAGCCAAAAAGAGCCAATT
3335971 TTCAGACCAAATTCTAACAACAGTCGTGCAACTTTACTTACAGCATTAAAGTGTGTCGTTTAACA
456 TTCAGACCAAATTCTAACAACAGTCGTGCAACTTTACTTACAGCATTAAAG-GTGTCGTTTAACA
3336036 AAACGGCTCATGTTAGTACACCTCCAAATAAGAG
520 AAACGGCTCATGTTAGTACACCTCCAAATAAGAG
3336070 TGG
1 TGG
3336073 CGCATGTTAG
Statistics
Matches: 554, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
552 504 0.91
554 50 0.09
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (553 bp):
TGGACAGAAAGTTCTTTTGTTTAATTCAAAGTTCAAAATTTTTGTAGAAAACCTTAAGTCGAAAT
GGCTAGGACCCTTGATAGTGATTGATGTTTTTCTTCATTAACCTGTAGAAGTAGAAGATAATTTC
GGTGCTTGATTGAAAGTAAATGGACAAAGACTTAAACCTTTTTATGAGAATGCATCAGTTAAATT
AATTGAAGAAATTCATTTGGAGAAACTGAGAGCTTAAAAAAAGGTCGTCGAGCTTAAAAGACGTT
AAACAAAGTACTTGTGGGAGCCAACCCATTATTTATTATATTTCTTTAATTTTCTTGCGATTTAA
ACTTTGTTCTTTAGGTTTATTCATTGTTTCACTTATACTAATTTTTTGTTTTTATTTTCAGGTAC
GTGATGCATTTTATTGAACTTAGAACGGAGTCGAGAGCAAATATTTCAGCCAAAAAGAGCCAATT
TTCAGACCAAATTCTAACAACAGTCGTGCAACTTTACTTACAGCATTAAAGGTGTCGTTTAACAA
AACGGCTCATGTTAGTACACCTCCAAATAAGAG
Found at i:3336338 original size:13 final size:13
Alignment explanation
Indices: 3336320--3336345 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3336310 CATAGTTGAA
3336320 CAGTCTTCATATG
1 CAGTCTTCATATG
3336333 CAGTCTTCATATG
1 CAGTCTTCATATG
3336346 TGCGTCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:3345584 original size:20 final size:19
Alignment explanation
Indices: 3345545--3345593 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
3345535 CTCTTAAACT
**
3345545 TTAAAATTCAATCATCCAC
1 TTAAAATTCAAGAATCCAC
3345564 TTAAAATTCAAGAATCTCAC
1 TTAAAATTCAAGAATC-CAC
*
3345584 -TCAAATTCAA
1 TTAAAATTCAA
3345594 ACGTGATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 23 0.88
20 3 0.12
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (19 bp):
TTAAAATTCAAGAATCCAC
Found at i:3354414 original size:14 final size:14
Alignment explanation
Indices: 3354395--3354450 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
3354385 CGTTCGTGAA
3354395 CGTTCGATTATGTT
1 CGTTCGATTATGTT
*
3354409 CGTTCGGTTATG-T
1 CGTTCGATTATGTT
*
3354422 --TT-GTTTATGTT
1 CGTTCGATTATGTT
3354433 CGTTCGATTATGTT
1 CGTTCGATTATGTT
3354447 CGTT
1 CGTT
3354451 TATGTTCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.09
13 3 0.09
14 23 0.66
ACGTcount: A:0.11, C:0.12, G:0.23, T:0.54
Consensus pattern (14 bp):
CGTTCGATTATGTT
Found at i:3354429 original size:24 final size:24
Alignment explanation
Indices: 3354402--3354471 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
3354392 GAACGTTCGA
*
3354402 TTATGTTCGTTCGGTTATGTTTGT
1 TTATGTTCGTTCGATTATGTTTGT
*
3354426 TTATGTTCGTTCGATTATGTTCGT
1 TTATGTTCGTTCGATTATGTTTGT
*
3354450 TTATGTTCATTC-ATTTATGTTT
1 TTATGTTCGTTCGA-TTATGTTT
3354472 AACTCAATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.13, C:0.10, G:0.19, T:0.59
Consensus pattern (24 bp):
TTATGTTCGTTCGATTATGTTTGT
Found at i:3355210 original size:10 final size:10
Alignment explanation
Indices: 3355195--3355269 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
3355185 GGGTCTCCAA
3355195 CGTTTATGTT
1 CGTTTATGTT
3355205 CGTTTATGTT
1 CGTTTATGTT
3355215 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
3355226 ATGTTCGTGTT
1 -CGTTTATGTT
3355237 CGTTTATGTT
1 CGTTTATGTT
3355247 C----ATGTT
1 CGTTTATGTT
3355253 CGTTTATGTT
1 CGTTTATGTT
3355263 CGTTTAT
1 CGTTTAT
3355270 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.11, C:0.12, G:0.20, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:3355226 original size:16 final size:16
Alignment explanation
Indices: 3355201--3355265 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
3355191 CCAACGTTTA
3355201 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
3355217 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
*
3355233 TGTTCGTTTATGTTCA
1 TGTTCGTTTATGTTCG
3355249 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
3355265 T
1 T
3355266 TTATTTATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.09, C:0.12, G:0.22, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:3355233 original size:26 final size:24
Alignment explanation
Indices: 3355197--3355273 Score: 90
Period size: 26 Copynumber: 3.2 Consensus size: 24
3355187 GTCTCCAACG
3355197 TTTATGTTCGTTTATGTTCGTGTTCA
1 TTTATGTTCGTTTATGTTCGT-TT-A
3355223 TTTATGTTCG----TGTTCGTTTA
1 TTTATGTTCGTTTATGTTCGTTTA
3355243 TGTTCATGTTCGTTTATGTTCGTTTA
1 T-TT-ATGTTCGTTTATGTTCGTTTA
3355269 TTTAT
1 TTTAT
3355274 TAAATGAACG
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
20 2 0.04
21 4 0.09
22 14 0.31
24 2 0.04
25 2 0.04
26 21 0.47
ACGTcount: A:0.12, C:0.10, G:0.18, T:0.60
Consensus pattern (24 bp):
TTTATGTTCGTTTATGTTCGTTTA
Found at i:3355356 original size:16 final size:16
Alignment explanation
Indices: 3355335--3355367 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
3355325 AAAAAAAATT
3355335 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
3355351 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
3355367 T
1 T
3355368 CTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:3355641 original size:41 final size:39
Alignment explanation
Indices: 3355557--3355954 Score: 301
Period size: 41 Copynumber: 10.4 Consensus size: 39
3355547 ATGGTTTTCG
3355557 AAAATATATATAT--TATATAGTTTTAAAAAT-ATTTT--
1 AAAATATATATATAATATATAGTTTT-AAAATCATTTTGA
* **
3355592 TAAA-ATATATATAATATATAGTTCGAAAAT-ATTTTGA
1 AAAATATATATATAATATATAGTTTTAAAATCATTTTGA
* * *
3355629 AAACATTTATATATTATATA-ATTTTTTAAAAGTCATTTTGA
1 AAA-ATATATATATAATATATA-GTTTTAAAA-TCATTTTGA
* *
3355670 AAACAT-TCATATATTATATA-ATTTTTTAAAAGTCATTTTGA
1 AAA-ATAT-ATATATAATATATA-GTTTTAAAA-TCATTTTGA
*
3355711 AAAA-ATATATATAAAATATAGTTTTTAAAA-CATTTTG-
1 AAAATATATATATAATATATAG-TTTTAAAATCATTTTGA
3355748 AAAAT-TATATATAATATATAGTTTTGAAAA-CATTTTGA
1 AAAATATATATATAATATATAGTTTT-AAAATCATTTTGA
* * *
3355786 AAACATTTATATATTATATA-ATTTTTAAAAATCATTTTG-
1 AAA-ATATATATATAATATATAGTTTT-AAAATCATTTTGA
3355825 AAAATATATATATAATATATAGTTTTTTTTAAAA-CATTTTG-
1 AAAATATATATATAATATATAG----TTTTAAAATCATTTTGA
3355866 -AAA-AT-TATATAATATATAGTTTTGAAAAT-ATTTT--
1 AAAATATATATATAATATATAGTTTT-AAAATCATTTTGA
3355900 AAAATATATATATAATATATTA-TTTTGAAAAT-ATTTTTGA
1 AAAATATATATATAATATA-TAGTTTT-AAAATCA-TTTTGA
*
3355940 AATATATATTATATA
1 AAAATATA-TATATA
3355955 GTTTTAAAAC
Statistics
Matches: 309, Mismatches: 20, Indels: 62
0.79 0.05 0.16
Matches are distributed among these distances:
34 12 0.04
35 25 0.08
36 15 0.05
37 54 0.17
38 46 0.15
39 45 0.15
40 42 0.14
41 62 0.20
42 4 0.01
43 4 0.01
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (39 bp):
AAAATATATATATAATATATAGTTTTAAAATCATTTTGA
Found at i:3355783 original size:11 final size:11
Alignment explanation
Indices: 3355769--3355793 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3355759 TAATATATAG
3355769 TTTTGAAAACA
1 TTTTGAAAACA
3355780 TTTTGAAAACA
1 TTTTGAAAACA
3355791 TTT
1 TTT
3355794 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:3355875 original size:116 final size:113
Alignment explanation
Indices: 3355563--3355954 Score: 438
Period size: 116 Copynumber: 3.4 Consensus size: 113
3355553 TTCGAAAATA
* * ** *
3355563 TATATATTATAT-AGTTTTAAAAATATTTT-TAAA-ATATATATAATATATAG-TTCGAAAATAT
1 TATATATTATATAATTTTTAAAAATATTTTGAAAATATATATATAATATATAGTTTTTAAAACAT
* * *
3355624 TTTGAAAACATTTATATATTATATAATTTTTTAAAAGTCATTTTGAAAACATT
66 TTTG-AAA-ATTTATATAATATAT-AGTTTTGAAAA--CATTTTGAAAACATT
* * * *
3355677 CATATATTATATAATTTTTTAAAAGTCATTTTGAAAAAATATATATAAAATATAGTTTTTAAAAC
1 TATATATTATATAA-TTTTTAAAAAT-ATTTTGAAAATATATATATAATATATAGTTTTTAAAAC
3355742 ATTTTGAAAATTATATATAATATATAGTTTTGAAAACATTTTGAAAACATT
64 ATTTTGAAAATT-TATATAATATATAGTTTTGAAAACATTTTGAAAACATT
3355793 TATATATTATATAATTTTTAAAAATCATTTTGAAAATATATATATAATATATAGTTTTTTTTAAA
1 TATATATTATATAATTTTTAAAAAT-ATTTTGAAAATATATATATAATATATAG---TTTTTAAA
* * *
3355858 ACATTTTGAAAA-TTATATAATATATAGTTTTGAAAATATTTT-AAAATATA
62 ACATTTTGAAAATTTATATAATATATAGTTTTGAAAACATTTTGAAAACATT
* * *
3355908 TATATAATATATTA-TTTTGAAAATATTTTTGAAATATATATTATATA
1 TATATATTATATAATTTTTAAAAATA-TTTTGAAA-ATATA-TATATA
3355955 GTTTTAAAAC
Statistics
Matches: 244, Mismatches: 21, Indels: 24
0.84 0.07 0.08
Matches are distributed among these distances:
113 1 0.00
114 28 0.11
115 61 0.25
116 71 0.29
117 6 0.02
118 35 0.14
119 30 0.12
120 12 0.05
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (113 bp):
TATATATTATATAATTTTTAAAAATATTTTGAAAATATATATATAATATATAGTTTTTAAAACAT
TTTGAAAATTTATATAATATATAGTTTTGAAAACATTTTGAAAACATT
Found at i:3355906 original size:24 final size:24
Alignment explanation
Indices: 3355861--3355907 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
3355851 TTTTAAAACA
*
3355861 TTTTGAAAATTATATAATATATAG
1 TTTTGAAAATTATATAAAATATAG
*
3355885 TTTTGAAAA-TATTTTAAAATATA
1 TTTTGAAAATTA-TATAAAATATA
3355908 TATATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (24 bp):
TTTTGAAAATTATATAAAATATAG
Found at i:3355934 original size:11 final size:12
Alignment explanation
Indices: 3355879--3355946 Score: 52
Period size: 12 Copynumber: 5.5 Consensus size: 12
3355869 ATTATATAAT
3355879 ATATAGTTTTGAA
1 ATATA-TTTTGAA
*
3355892 A-ATATTTTAAA
1 ATATATTTTGAA
*
3355903 ATATATATAT-AA
1 ATATAT-TTTGAA
3355915 TATATTATTTTGAA
1 -ATA-TATTTTGAA
3355929 A-ATATTTTTGAA
1 ATATA-TTTTGAA
3355941 ATATAT
1 ATATAT
3355947 ATTATATAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
11 9 0.20
12 19 0.42
13 12 0.27
14 5 0.11
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (12 bp):
ATATATTTTGAA
Found at i:3355978 original size:71 final size:75
Alignment explanation
Indices: 3355515--3355970 Score: 293
Period size: 78 Copynumber: 6.0 Consensus size: 75
3355505 TTTATTATAT
* * ** *
3355515 ATATATATATAGTAATATAGTTTTTTTCGAAAATGGTTTTCGAAAATATATATATTATATAGTTT
1 ATATATATATAAT-ATATAGTTATTTT-GAAAA-CATTTT-GAAAAT-TATATAATATATAGTTT
*
3355580 T-AAAAATATTTTTAA
61 TGAAAAA-ATTTTAAA
* * * *
3355595 A-ATATATATAATATATAG----TTCGAAAATATTTTGAAAACATTTATATATTATATAATTTTT
1 ATATATATATAATATATAGTTATTTTGAAAACATTTTG-AAA-A-TTATATAATATAT-AGTTTT
* *
3355655 TAAAAGTCATTTTGAAA
62 GAAAA--AATTTT-AAA
* * * *
3355672 ACAT-TCATATATTATATAATT-TTTT-AAAAGTCATTTTGAAAAAATATATATAAAATATAGTT
1 ATATAT-ATATAATATATAGTTATTTTGAAAA--CATTTTG--AAAAT-TATATAATATATAGTT
* *
3355734 TTTAAAACATTTTGAAA
60 TTGAAAAAATTTT-AAA
* * *
3355751 AT-TATATATAATATATAG---TTTTGAAAACATTTTGAAAACATTTATATATTATATAATTTTT
1 ATATATATATAATATATAGTTATTTTGAAAACATTTTG-AAA-A-TTATATAATATATAGTTTTG
3355812 AAAAATCATTTTGAAA
63 AAAAA--ATTTT-AAA
* *
3355828 ATATATATATAATATATAGTTTTTTTTAAAACATTTTGAAAATTATATAATATATAGTTTTGAAA
1 ATATATATATAATATATAGTTATTTTGAAAACATTTTGAAAATTATATAATATATAGTTTTGAAA
*
3355893 ATATTTTAAA
66 AAATTTTAAA
* *
3355903 ATATATATAT-A-ATATA-TTATTTTGAAAATATTTTTG-AAA-TATATATTATATAGTTTT-AA
1 ATATATATATAATATATAGTTATTTTGAAAACA-TTTTGAAAATTATATAATATATAGTTTTGAA
3355962 AACAATTTT
65 AA-AATTTT
3355971 TTTATATAGT
Statistics
Matches: 316, Mismatches: 31, Indels: 67
0.76 0.07 0.16
Matches are distributed among these distances:
70 4 0.01
71 23 0.07
72 21 0.07
73 28 0.09
74 13 0.04
75 45 0.14
76 15 0.05
77 19 0.06
78 68 0.22
79 23 0.07
80 8 0.03
81 28 0.09
82 17 0.05
83 4 0.01
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (75 bp):
ATATATATATAATATATAGTTATTTTGAAAACATTTTGAAAATTATATAATATATAGTTTTGAAA
AAATTTTAAA
Found at i:3356018 original size:20 final size:22
Alignment explanation
Indices: 3355985--3356024 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
3355975 TATAGTATGC
3355985 TATATATATCTTATTATTATAT
1 TATATATATCTTATTATTATAT
*
3356007 TATAT-TAT-TTATTTTTAT
1 TATATATATCTTATTATTAT
3356025 TTTTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (22 bp):
TATATATATCTTATTATTATAT
Found at i:3357801 original size:3 final size:3
Alignment explanation
Indices: 3357779--3357823 Score: 65
Period size: 3 Copynumber: 14.7 Consensus size: 3
3357769 TTTTTCCCTT
3357779 TTA TTGA TT- TTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TT-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
3357824 TTCTTTGCCC
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.05
3 31 0.79
4 6 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:3357861 original size:57 final size:58
Alignment explanation
Indices: 3357739--3357862 Score: 130
Period size: 57 Copynumber: 2.2 Consensus size: 58
3357729 TTTTCCCCTT
* * * * *
3357739 TTGATCTATTTTTATTTTTACTTTTTTTTCTTTTTCCCTTTTATTGATTTTATTATTTA
1 TTGAT-TATTATTATTATTACTTTTTTTTCTTTTGCCCTTTGATTGATTTTAATATTTA
* *
3357798 TT-ATTATTATTATTATTA-TTATTATTTTC-TTTGCCCTTTGATTTA-TTTAATATTTG
1 TTGATTATTATTATTATTACTT-TT-TTTTCTTTTGCCCTTTGATTGATTTTAATATTTA
3357854 TTGATTATT
1 TTGATTATT
3357863 TGTTATCTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
56 13 0.24
57 33 0.60
58 7 0.13
59 2 0.04
ACGTcount: A:0.19, C:0.08, G:0.05, T:0.68
Consensus pattern (58 bp):
TTGATTATTATTATTATTACTTTTTTTTCTTTTGCCCTTTGATTGATTTTAATATTTA
Found at i:3361591 original size:95 final size:96
Alignment explanation
Indices: 3361423--3361620 Score: 317
Period size: 95 Copynumber: 2.1 Consensus size: 96
3361413 TATAATATTA
*
3361423 TATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGTAATTGGCTAAACGCCCCGACTTTATG
1 TATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGCTAAACGCCCCGACTTTATG
* *
3361488 GATAAGATTCAGCTAGCCTGATAAAGGTGAT
66 GATAAGATTCAACTAACCTGATAAAGGTGAT
* * * *
3361519 TATA-ATATACAATAAAGCTTGAGTTGTCCCTCTAAGGCAATTGGTTAAACGCCCTGACTTTATG
1 TATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGCTAAACGCCCCGACTTTATG
*
3361583 GATAAGATTCAACTAACCTGATAAAGGTGTT
66 GATAAGATTCAACTAACCTGATAAAGGTGAT
3361614 TATATAT
1 TATATAT
3361621 TAAGTTGTCC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 87 0.94
96 6 0.06
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (96 bp):
TATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGCTAAACGCCCCGACTTTATG
GATAAGATTCAACTAACCTGATAAAGGTGAT
Found at i:3362902 original size:84 final size:83
Alignment explanation
Indices: 3362761--3363563 Score: 772
Period size: 84 Copynumber: 9.6 Consensus size: 83
3362751 AATGTCAGCC
* * * * *
3362761 AAGACTTTCGAGTTCGACTACGCTCAACTCCAAGGTACATCATTTGCAGCATAACTTAAGGCTAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
3362826 AAGGGCTATTTGCCACCAA
66 AAGGGTTATCTGCCACC-A
* *
3362845 AAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
3362910 AAGGGTTATCTGCCAACCA
66 AAGGGTTATCTGCC-ACCA
* * *
3362929 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAT
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
3362994 AAGGGCTATCTG---CCA
66 AAGGGTTATCTGCCACCA
* * * * * * ** * * * *
3363009 AAGACCCTCGAGTTCGATTACACTGAGCTTCGAGGGCACATCATTTATAACATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * *
3363074 TAAGGGTTATTTGTCACCAA
65 GAAGGGTTATCTGCCACC-A
*
3363094 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
3363159 AAGGGTTATCTGTCAACCA
66 AAGGGTTATCTG-CCACCA
* * * *
3363178 AAAACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
3363243 AAGGGCTATCAG---CCA
66 AAGGGTTATCTGCCACCA
* * * * * * * *
3363258 AAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATTATTTGCAGCATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
*
3363323 GAAGGGTTATCTGCCAACA
65 GAAGGGTTATCTGCCACCA
* * * ** * * * * * * *
3363342 AAGACCTTCGAGTTCAATTACACTCAGCTTTGAAGGCATATTATTTACAGCATAAATCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * *
3363407 GAAGGGTTATTTGTCAACA
65 GAAGGGTTATCTGCCACCA
* * * * * ** * *
3363426 AAGACCTTCGAGTTCGATTACACTCAACTCAAAGGCACGTCATTTGTTGTATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
** * *
3363491 AAGGGCCATTTACCAACCA
66 AAGGGTTATCTGCC-ACCA
* * * * * *
3363510 AAGACCTTCGAGTTCGATTACACTTAACTCAAAGGCGCCATCATTTGCAGCATA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC-ACATCATTTGCAGCATA
3363564 GCTCAAGGCA
Statistics
Matches: 603, Mismatches: 103, Indels: 25
0.82 0.14 0.03
Matches are distributed among these distances:
80 54 0.09
81 78 0.13
83 33 0.05
84 395 0.66
85 43 0.07
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (83 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
AAGGGTTATCTGCCACCA
Found at i:3363235 original size:249 final size:249
Alignment explanation
Indices: 3362755--3363533 Score: 1035
Period size: 249 Copynumber: 3.1 Consensus size: 249
3362745 TAACTCAATG
* * * * * * * * * *
3362755 TCAGCC-AAGACTTTCGAGTTCGACTACGCTCAAC-TCCAAGGTACATCATTTGCAGCATAACTT
1 TCAGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTC
* *
3362818 AAGGCTAGAAGGGCTATTTGCCACCAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCAT
66 AAGGCTAGAAGGGTTATTTGCCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
*
3362883 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
131 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACT
*
3362948 ACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGATAAGGGCTA
196 ACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAGAAGGGCTA
* * * *
3363002 TCTGCCAAAGACCCTCGAGTTCGATTACACTGAGCTTCGAGGGCACATCATTTATAACATAACTC
1 TCAGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTC
* *
3363067 AAGGCTATAAGGGTTATTTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
66 AAGGCTAGAAGGGTTATTTGCCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
* *
3363132 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCAACCAAAAACCTTCGAGTTTGACT
131 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACT
**
3363197 ACGCTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTA
196 ACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAGAAGGGCTA
* * *
3363251 TCAGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATTATTTGCAGCATAACTC
1 TCAGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTC
* * * * * **
3363316 AAGGCTAGAAGGGTTATCTGCCAAC-AAAGACCTTCGAGTTCAATTACACTCAGCTTTGAAGGCA
66 AAGGCTAGAAGGGTTATTTGCCACCAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCA
* * * * * * * *
3363380 TATTATTTACAGCATAAATCAAGGCTAGAAGGGTTATTTGTCAA-CAAAGACCTTCGAGTTCGAT
130 TATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGAC
* * * * * *
3363444 TACACTCAACTCAAAGGCACGTCATTTGTTGTATAGCTTAAGTCGAGAAGGGCCATTTA
195 TACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAGAAGGG-C---TA
* *
3363503 CCAACCAAAGACCTTCGAGTTCGATTACACT
1 TCAGCCAAAGACCTTCGAGTTCGATTACACT
3363534 TAACTCAAAG
Statistics
Matches: 465, Mismatches: 60, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
247 5 0.01
248 109 0.23
249 320 0.69
252 31 0.07
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (249 bp):
TCAGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTC
AAGGCTAGAAGGGTTATTTGCCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACT
ACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAGAAGGGCTA
Found at i:3363404 original size:333 final size:329
Alignment explanation
Indices: 3362761--3363566 Score: 995
Period size: 333 Copynumber: 2.4 Consensus size: 329
3362751 AATGTCAGCC
* * * *
3362761 AAGACTTTCGAGTTCGACTACGCTCAACTCCAAGGTACATCATTTGCAGCATAACTTAAGGCTAG
1 AAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
3362826 AAGGGCTATTTGCCACCAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTTG
66 AAGGGCTATTTGCAACCAAAA-ACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTG
* * *
3362891 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAG
130 CAGCATAGCTTAAGTCGAGAAGGGCTA-CT-CCAACCAAAGACCTTCGAGTTCGACTACACTCAG
* * * * *
3362956 CTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGATAAGGGCTATCTGCCAAAGACCCTCGAG
193 CTCCAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAAAGACCCTCGAG
* * * * * *
3363021 TTCGATTACACTGAGCTTCGAGGGCACATCATTTATAACATAACTCAAGGCTATAAGGGTTATTT
258 TTCAATTACACTCAGCTTCGAAGGCACATCATTTACAACATAAATCAAGGCTAGAAGGGTTATTT
*
3363086 GTCACCAA
323 GTCAAC-A
* *
3363094 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * *
3363159 AAGGGTTATCTGTCAACCAAAAACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTA
66 AAGGGCTATTTG-CAACCAAAAACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTG
* *
3363224 CAGCATAGCTTAAGTCGAGAAGGGCTA-T-CAGCCAAAGACCTTCGAGTTCGATTACACTCAGCT
130 CAGCATAGCTTAAGTCGAGAAGGGCTACTCCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-
* * * * * *
3363287 TCGAGGGCACATTATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCG
194 TCCAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTG-C--CAAAGACCCTCG
* * * *
3363352 AGTTCAATTACACTCAGCTTTGAAGGCATATTATTTACAGCATAAATCAAGGCTAGAAGGGTTAT
256 AGTTCAATTACACTCAGCTTCGAAGGCACATCATTTACAACATAAATCAAGGCTAGAAGGGTTAT
3363417 TTGTCAACA
321 TTGTCAACA
* * * * ** * *
3363426 AAGACCTTCGAGTTCGATTACACTCAACTCAAAGGCACGTCATTTGTTGTATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * * * * * * * *
3363491 AAGGGCCATTTACCAACCAAAGACCTTCGAGTTCGATTACACTTAACTCAAAGGCGCCATCATTT
66 AAGGGCTATTT-GCAACCAAAAACCTTCGAGTTTGACTACGCTCAGCTCCAAGGC-ACATCATTT
3363556 GCAGCATAGCT
129 GCAGCATAGCT
3363567 CAAGGCAAGA
Statistics
Matches: 405, Mismatches: 61, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
329 31 0.08
330 39 0.10
331 2 0.00
332 99 0.24
333 226 0.56
334 8 0.02
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (329 bp):
AAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
AAGGGCTATTTGCAACCAAAAACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGC
AGCATAGCTTAAGTCGAGAAGGGCTACTCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
CAAGGCACATCATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTC
AATTACACTCAGCTTCGAAGGCACATCATTTACAACATAAATCAAGGCTAGAAGGGTTATTTGTC
AACA
Found at i:3364176 original size:106 final size:106
Alignment explanation
Indices: 3363991--3364191 Score: 366
Period size: 106 Copynumber: 1.9 Consensus size: 106
3363981 GAGCCATCTG
* *
3363991 CAATACAATTCGATAGGGAGTTATTCTTAATTTATCAGAGTCAAGTTTTTAACTCCGCCGAGCGA
1 CAATACAATTCGACAGGGAGTTATTCTTAATTTATCAGAGTCAAGTTTTCAACTCCGCCGAGCGA
3364056 AAATTTGTGTCATTTTATCTTTGTCCTATTTTTCGTGGCTC
66 AAATTTGTGTCATTTTATCTTTGTCCTATTTTTCGTGGCTC
*
3364097 CAATACAATTCGACAGGGAGTTATTCTTAATTTATCAGAGTCAAGTTTTCAACTCCGTCGAGCGA
1 CAATACAATTCGACAGGGAGTTATTCTTAATTTATCAGAGTCAAGTTTTCAACTCCGCCGAGCGA
*
3364162 AAATTTGTGTCATTTTATCTTTTTCCTATT
66 AAATTTGTGTCATTTTATCTTTGTCCTATT
3364192 ATCGTTCAAC
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 91 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (106 bp):
CAATACAATTCGACAGGGAGTTATTCTTAATTTATCAGAGTCAAGTTTTCAACTCCGCCGAGCGA
AAATTTGTGTCATTTTATCTTTGTCCTATTTTTCGTGGCTC
Found at i:3364371 original size:11 final size:11
Alignment explanation
Indices: 3364357--3364417 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
3364347 TATTATATAG
3364357 TTTTGAAAACA
1 TTTTGAAAACA
* *
3364368 TTTTTAAAATA
1 TTTTGAAAACA
*
3364379 TATAT-AATATACA
1 T-TTTGAA-A-ACA
3364392 TTTTCGAAAACA
1 TTTT-GAAAACA
3364404 TTTTGAAAACA
1 TTTTGAAAACA
3364415 TTT
1 TTT
3364418 ATATATTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
11 22 0.55
12 12 0.30
13 4 0.10
14 2 0.05
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:3364454 original size:41 final size:41
Alignment explanation
Indices: 3364398--3364516 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
3364388 TACATTTTCG
3364398 AAAA-CATTTTGAAAACATTTATATATTATATAGTTTTTTA
1 AAAATCATTTTGAAAACATTTATATATTATATAGTTTTTTA
* * *
3364438 AAAGTCATTTTGAAAACATTCATATATTATATAATTTTTTA
1 AAAATCATTTTGAAAACATTTATATATTATATAGTTTTTTA
* * *
3364479 AAAATCATTTTGAAAATATATATATATAATATAGTTTT
1 AAAATCATTTTGAAAACATTTATATATTATATAGTTTT
3364517 GAAAACATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
40 3 0.04
41 66 0.96
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (41 bp):
AAAATCATTTTGAAAACATTTATATATTATATAGTTTTTTA
Found at i:3364523 original size:109 final size:104
Alignment explanation
Indices: 3364404--3364630 Score: 339
Period size: 108 Copynumber: 2.1 Consensus size: 104
3364394 TTCGAAAACA
* * *
3364404 TTTTGAAAACATTTATATATTATATAGTTTTTTAAAAGTCATTTTGAAAACAT-TCATATATTAT
1 TTTTGAAAACATTTATATATTATATAG-TTTTTAAAAATCATTTTGAAAAAATAT-ATATAATAT
3364468 ATAATTTTTTAAAAATCATTTTGAAAATATATATATATAATATAG
64 ATAATTTTTTAAAAA-CATTTTGAAAAT-TATATA-AT-ATATAG
3364513 TTTTGAAAACATTTATATATTATATAGTTTTTAAAAATCATTTTGAAAAAATATATATAATATAT
1 TTTTGAAAACATTTATATATTATATAGTTTTTAAAAATCATTTTGAAAAAATATATATAATATAT
* *
3364578 AGTTTTTTTAAAACATTTTGAAAATTATATAATATATAG
66 AATTTTTTAAAAACATTTTGAAAATTATATAATATATAG
*
3364617 TTTTGAAAATATTT
1 TTTTGAAAACATTT
3364631 TAAAATATGT
Statistics
Matches: 111, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
104 19 0.17
105 2 0.02
106 6 0.05
107 12 0.11
108 44 0.40
109 28 0.25
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.47
Consensus pattern (104 bp):
TTTTGAAAACATTTATATATTATATAGTTTTTAAAAATCATTTTGAAAAAATATATATAATATAT
AATTTTTTAAAAACATTTTGAAAATTATATAATATATAG
Found at i:3364554 original size:29 final size:28
Alignment explanation
Indices: 3364486--3364555 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
3364476 TTAAAAATCA
*
3364486 TTTTGAAAAT-ATATATATATAATATAG
1 TTTTGAAAATCATTTATATATAATATAG
*
3364513 TTTTGAAAA-CATTTATATATTATATAG
1 TTTTGAAAATCATTTATATATAATATAG
*
3364540 TTTTTAAAAATCATTT
1 -TTTTGAAAATCATTT
3364556 TGAAAAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 24 0.65
28 8 0.22
29 5 0.14
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (28 bp):
TTTTGAAAATCATTTATATATAATATAG
Found at i:3364570 original size:67 final size:68
Alignment explanation
Indices: 3364445--3364583 Score: 228
Period size: 67 Copynumber: 2.1 Consensus size: 68
3364435 TTAAAAGTCA
* *
3364445 TTTTGAAAACATTCATATATTATATAATTTTTTAAAAATCATTTTGAAAATATATATAT-ATAAT
1 TTTTGAAAACATTCATATATTATATAAGTTTTTAAAAATCATTTTGAAAAAATATATATAAT-AT
3364509 ATAG
65 ATAG
*
3364513 TTTTGAAAACATTTATATATTATAT-AGTTTTTAAAAATCATTTTGAAAAAATATATATAATATA
1 TTTTGAAAACATTCATATATTATATAAGTTTTTAAAAATCATTTTGAAAAAATATATATAATATA
3364577 TAG
66 TAG
3364580 TTTT
1 TTTT
3364584 TTTAAAACAT
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
67 41 0.61
68 26 0.39
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.47
Consensus pattern (68 bp):
TTTTGAAAACATTCATATATTATATAAGTTTTTAAAAATCATTTTGAAAAAATATATATAATATA
TAG
Found at i:3364613 original size:42 final size:40
Alignment explanation
Indices: 3364513--3364693 Score: 160
Period size: 35 Copynumber: 4.9 Consensus size: 40
3364503 TATAATATAG
* * *
3364513 TTTTGAAAACATTTATATATTATATAGTTTTTAAAAATCA
1 TTTTGAAAAAATATATATAATATATAGTTTTTAAAAATCA
*
3364553 TTTTGAAAAAATATATATAATATATAGTTTTTTTAAAA-CA
1 TTTTGAAAAAATATATATAATATATAG-TTTTTAAAAATCA
*
3364593 TTTTG--AAAAT-TATATAATATATAG-TTTTGAAAAT-A
1 TTTTGAAAAAATATATATAATATATAGTTTTTAAAAATCA
* * * *
3364628 TTTT---AAAATATGTATAATATAT-GATTTTGAAAATAA
1 TTTTGAAAAAATATATATAATATATAGTTTTTAAAAATCA
3364664 TTTTG---AAATATATAT--TATATAG-TTTTAAAA
1 TTTTGAAAAAATATATATAATATATAGTTTTTAAAA
3364694 CAATTTTTTT
Statistics
Matches: 126, Mismatches: 8, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
34 18 0.14
35 35 0.28
36 14 0.11
37 14 0.11
38 5 0.04
40 31 0.25
41 9 0.07
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.46
Consensus pattern (40 bp):
TTTTGAAAAAATATATATAATATATAGTTTTTAAAAATCA
Found at i:3365679 original size:2 final size:2
Alignment explanation
Indices: 3365672--3365705 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
3365662 CTTTAAGACG
3365672 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3365706 AAACGAAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3366172 original size:15 final size:15
Alignment explanation
Indices: 3366152--3366199 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 15
3366142 TATATATATA
3366152 ATTTTTTATTCTATT
1 ATTTTTTATTCTATT
3366167 ATTTTTATACTATCTATT
1 ATTTTT-TA-T-TCTATT
3366185 ATTTATTTATT-TATT
1 ATTT-TTTATTCTATT
3366200 TTATTAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 10 0.34
16 3 0.10
17 2 0.07
18 12 0.41
19 2 0.07
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTATTCTATT
Found at i:3366218 original size:2 final size:2
Alignment explanation
Indices: 3366211--3366235 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3366201 TATTAAATGT
3366211 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
3366236 CTCCTATGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3366512 original size:42 final size:42
Alignment explanation
Indices: 3366466--3366546 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
3366456 TTTTTTTTAT
* *
3366466 TTTTTGTTTTCATATTTATTTAATTTTTCCCCTTTTGATCTA
1 TTTTTATTTTCATATTTACTTAATTTTTCCCCTTTTGATCTA
* * * *
3366508 TTTTTATTTTTATTTTTACTTATTTTTTTCCCTTTTGAT
1 TTTTTATTTTCATATTTACTTAATTTTTCCCCTTTTGAT
3366547 TGATTTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.15, C:0.12, G:0.04, T:0.69
Consensus pattern (42 bp):
TTTTTATTTTCATATTTACTTAATTTTTCCCCTTTTGATCTA
Found at i:3366533 original size:41 final size:43
Alignment explanation
Indices: 3366488--3366616 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 43
3366478 TATTTATTTA
3366488 ATTTTTCCCCTTTTGATCT-ATTTTTATT-TTTATTT-TTACTTATT
1 ATTTTTCCCCTTTTGAT-TGA-TTTTATTATTT-TTTATTA-TTATT
3366532 -TTTTT-CCCTTTTGATTGATTTTATTATTTTTTATTATTATT
1 ATTTTTCCCCTTTTGATTGATTTTATTATTTTTTATTATTATT
* *
3366573 ATTTTTCCTTTGCCTTTTGATTTA-TTTAATATTTGTTTATTATT
1 ATTTTTCC----CCTTTTGATTGATTTTATTATTT-TTTATTATT
3366617 TGTTATCTAG
Statistics
Matches: 73, Mismatches: 2, Indels: 17
0.79 0.02 0.18
Matches are distributed among these distances:
41 16 0.22
42 22 0.30
43 6 0.08
46 9 0.12
47 20 0.27
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (43 bp):
ATTTTTCCCCTTTTGATTGATTTTATTATTTTTTATTATTATT
Found at i:3368552 original size:23 final size:23
Alignment explanation
Indices: 3368525--3368575 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
3368515 TAAAGTATCA
* *
3368525 GTTATATAAGCGCTACCTATTAC
1 GTTATATAAGCACTACCTAATAC
*
3368548 GTTATATAAGCACTACCTAATAT
1 GTTATATAAGCACTACCTAATAC
3368571 GTTAT
1 GTTAT
3368576 TATGCTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (23 bp):
GTTATATAAGCACTACCTAATAC
Found at i:3368892 original size:119 final size:118
Alignment explanation
Indices: 3368702--3368957 Score: 318
Period size: 119 Copynumber: 2.2 Consensus size: 118
3368692 TAACAAATTA
** * * * * *
3368702 AGTAATTAACTTATTTTG-TTATCGTCGGATTTTCAAAGCCCAATCAGCTTAAAAAGGCGCTACC
1 AGTAATTAACCGATTATGTTTATCATCAGATTTCCAAAGCCCAATCAGCTTAAAAAGGCGATACC
** *
3368766 TATTACGTTATATAAGCGCTACCTAATTTGTTATTATACTTGATAATGTT-TC
66 TATTACGTTATATAAGCGCTACCTAAAATGTTATTATACTTGATAATGTTAAC
**
3368818 TAGTAATTAACCGATTATGTTTATCATCAGATTTCCAAAGCCCCGTCAGCATTAAAAAGGCGATA
1 -AGTAATTAACCGATTATGTTTATCATCAGATTTCCAAAGCCCAATCAGC-TTAAAAAGGCGATA
* * **
3368883 CCTATTACGTTATATTAGCGCTACCTAAAATGTTATTGTGTTTGATAATGTTAAC
64 CCTATTACGTTATATAAGCGCTACCTAAAATGTTATTATACTTGATAATGTTAAC
* *
3368938 GGTAATTAACCGGTTATGTT
1 AGTAATTAACCGATTATGTT
3368958 ATCGTCTATA
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
117 15 0.13
118 25 0.21
119 77 0.65
120 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (118 bp):
AGTAATTAACCGATTATGTTTATCATCAGATTTCCAAAGCCCAATCAGCTTAAAAAGGCGATACC
TATTACGTTATATAAGCGCTACCTAAAATGTTATTATACTTGATAATGTTAAC
Found at i:3372481 original size:16 final size:16
Alignment explanation
Indices: 3372460--3372491 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3372450 ACACCCTTTG
3372460 TATTATTTAATTTTTT
1 TATTATTTAATTTTTT
*
3372476 TATTATTTTATTTTTT
1 TATTATTTAATTTTTT
3372492 CCTTAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTATTTAATTTTTT
Found at i:3373095 original size:32 final size:33
Alignment explanation
Indices: 3373059--3373124 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
3373049 TAAAGAATAT
3373059 AACTAAAGACGCCGAGTAATC-CATGGAGCAAA
1 AACTAAAGACGCCGAGTAATCTCATGGAGCAAA
*
3373091 AACTAAAGACGCCGGGTAATCTCATGGAGCAAA
1 AACTAAAGACGCCGAGTAATCTCATGGAGCAAA
3373124 A
1 A
3373125 TTTTAGCCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 20 0.62
33 12 0.38
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.14
Consensus pattern (33 bp):
AACTAAAGACGCCGAGTAATCTCATGGAGCAAA
Found at i:3373487 original size:32 final size:33
Alignment explanation
Indices: 3373427--3373492 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
3373417 TAGGCTAAAA
3373427 TTTTGCTCCATGGAAATACCCGACGTCTTTAGT
1 TTTTGCTCCATGGAAATACCCGACGTCTTTAGT
* **
3373460 TTTTGCTCCATGG-ATTACCCGGTGTCTTTAGT
1 TTTTGCTCCATGGAAATACCCGACGTCTTTAGT
3373492 T
1 T
3373493 AAATTCTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (33 bp):
TTTTGCTCCATGGAAATACCCGACGTCTTTAGT
Found at i:3374618 original size:2 final size:2
Alignment explanation
Indices: 3374611--3374680 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
3374601 CCAAACTCCG
3374611 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3374653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3374681 TTATGCATTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3376489 original size:20 final size:21
Alignment explanation
Indices: 3376456--3376495 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
3376446 TATCGTTACT
3376456 ACAGGGCTGATATCGATACCC
1 ACAGGGCTGATATCGATACCC
*
3376477 ACAGGG-TGGTATCGATACC
1 ACAGGGCTGATATCGATACC
3376496 GAGATCACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (21 bp):
ACAGGGCTGATATCGATACCC
Found at i:3382385 original size:2 final size:2
Alignment explanation
Indices: 3382378--3382410 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3382368 AAACAATTCT
3382378 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3382411 CGTTAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3383733 original size:20 final size:18
Alignment explanation
Indices: 3383707--3383759 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 18
3383697 CAATTCAAGT
3383707 GGTATCGATACCAAGAGAG
1 GGTATCGATACCAAG-GAG
*
3383726 GAGTATCGATACCCTAAGGAT
1 G-GTATCGATA-CC-AAGGAG
3383747 GGTATCGATACCA
1 GGTATCGATACCA
3383760 TTGATCACAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.03
19 3 0.10
20 18 0.60
21 5 0.17
22 3 0.10
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (18 bp):
GGTATCGATACCAAGGAG
Found at i:3383806 original size:19 final size:19
Alignment explanation
Indices: 3383782--3383824 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
3383772 TGCAAAAATT
3383782 GTATCGGTACCGTAATAGA
1 GTATCGGTACCGTAATAGA
3383801 GTATCGGTACCGTAATAGA
1 GTATCGGTACCGTAATAGA
3383820 GTATC
1 GTATC
3383825 CATACCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (19 bp):
GTATCGGTACCGTAATAGA
Found at i:3383830 original size:19 final size:19
Alignment explanation
Indices: 3383789--3383841 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
3383779 ATTGTATCGG
**
3383789 TACCGTAATAGAGTATCGG
1 TACCGTAATAGAGTATCCA
3383808 TACCGTAATAGAGTATCCA
1 TACCGTAATAGAGTATCCA
* *
3383827 TACCATAATATAGTA
1 TACCGTAATAGAGTA
3383842 GTATCGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (19 bp):
TACCGTAATAGAGTATCCA
Found at i:3384261 original size:55 final size:55
Alignment explanation
Indices: 3384194--3384303 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 55
3384184 ATTACTAAAT
** * * *
3384194 GGCACTAGGTGTGCAAAATTAAGGAATTCATACTAAGCGTATGATTTTTCGTATG
1 GGCACTAGGTGTGCAAAACCAAGAAATTCATACTAAGCGTATGAATTTCCGTATG
* *
3384249 GGCACTATGTGTGCAAAACCAAGAAATTCATACTAAGTGTATGAATTTCCGTATG
1 GGCACTAGGTGTGCAAAACCAAGAAATTCATACTAAGCGTATGAATTTCCGTATG
3384304 ATAAATAGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (55 bp):
GGCACTAGGTGTGCAAAACCAAGAAATTCATACTAAGCGTATGAATTTCCGTATG
Found at i:3384641 original size:81 final size:81
Alignment explanation
Indices: 3384506--3384993 Score: 670
Period size: 81 Copynumber: 5.9 Consensus size: 81
3384496 ATTCTAAGAT
* *
3384506 TAAAAGATAAATGGTCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
3384571 ATTAAAGACCGTTGAG
66 ATTAAAGACCGTTGAG
* *
3384587 TAAAAGATAAGTGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATTAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
*
3384652 ATTAAAGACCGTTAAG
66 ATTAAAGACCGTTGAG
*
3384668 TAAAAGATAAATGGCCTAGCTTTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
*
3384733 GTTAAAGACCGTTGAG
66 ATTAAAGACCGTTGAG
* * * *
3384749 TAAAAGATAATTGGCTTAGCTGTGTATTTGGTAGAAAGGTGTCAGTTATGCCAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
* **
3384814 GTTAAAGATAGTTGAG
66 ATTAAAGACCGTTGAG
* * *
3384830 TAAAAGTTAAATGGCCTAGCTGTGCATTTGGTAGAAAATTTGGCAGAAAGGTGTCAATTTTGGCA
1 TAAAAGATAAATGGCCTAGCTGTGCATTT-G--G------T---AGAAAGGTGTCAATTATGCCA
*
3384895 GTTAGATGAACGGTTAAAGACCGTTGAG
54 GTTAGATGAACGATTAAAGACCGTTGAG
* * * *
3384923 TAAAAGATAAATGGCCTAGCTGTGCTTTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAATG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
3384988 ATTAAA
66 ATTAAA
3384994 TAGGGTTAGG
Statistics
Matches: 361, Mismatches: 34, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
81 285 0.79
82 1 0.00
84 1 0.00
90 2 0.01
92 1 0.00
93 71 0.20
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (81 bp):
TAAAAGATAAATGGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
ATTAAAGACCGTTGAG
Found at i:3384934 original size:93 final size:93
Alignment explanation
Indices: 3384774--3384959 Score: 291
Period size: 93 Copynumber: 2.0 Consensus size: 93
3384764 TTAGCTGTGT
* * * *
3384774 ATTTGGTAGAAAGGTGTCAGTTATGCCAGTTAGATGAACGGTTAAAGATAGTTGAGTAAAAGTTA
1 ATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACAGTTGAGTAAAAGATA
*
3384839 AATGGCCTAGCTGTGCATTTGGTAGAAA
66 AATGGCCTAGCTGTGCATTTGGCAGAAA
* * *
3384867 ATTTGGCAGAAAGGTGTCAATTTTGGCAGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATA
1 ATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACAGTTGAGTAAAAGATA
*
3384932 AATGGCCTAGCTGTGCTTTTGGCAGAAA
66 AATGGCCTAGCTGTGCATTTGGCAGAAA
3384960 TGTGTCAATT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (93 bp):
ATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACAGTTGAGTAAAAGATA
AATGGCCTAGCTGTGCATTTGGCAGAAA
Found at i:3386272 original size:81 final size:81
Alignment explanation
Indices: 3386137--3386489 Score: 519
Period size: 81 Copynumber: 4.4 Consensus size: 81
3386127 CATAACCTCT
*
3386137 AAAGGTGTCAATTCTGCCAGTTAGATGAAC-AGTTAAAGACCGTTGAGTAAAAGATAAATGGCCT
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGA-TTAAAGACCGTTGAGTAAAAGATAAATGGCCT
* *
3386201 AGCTATGCATTTGGTAG
65 AGCTGTGCATTTGGCAG
*
3386218 AAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGACCTA
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTA
3386283 GCTGTGCATTTGGCAG
66 GCTGTGCATTTGGCAG
*
3386299 AAAGGTGTCAATTATGCTAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTA
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTA
*
3386364 GTTGTGCATTTGGCAG
66 GCTGTGCATTTGGCAG
* * * * *
3386380 AAAAGTGTCAATTATGTCAGTTAGATGAACGGTTAAAGACCGTTGAGAAAAAGATAAATGGACTA
1 AAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTA
* * **
3386445 GCTTTGTATTTGATAG
66 GCTGTGCATTTGGCAG
* * **
3386461 AAAAGTGTCAATCATGTAAGTTAGATGAA
1 AAAGGTGTCAATTATGCCAGTTAGATGAA
3386490 AGGTTAAATG
Statistics
Matches: 251, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
81 250 1.00
82 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (81 bp):
AAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTA
GCTGTGCATTTGGCAG
Found at i:3386536 original size:162 final size:161
Alignment explanation
Indices: 3386141--3386538 Score: 461
Period size: 162 Copynumber: 2.5 Consensus size: 161
3386131 ACCTCTAAAG
* *
3386141 GTGTCAATTC-TGCCAGTTAGATGAACAG-TTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGC
1 GTGTCAA-TCATGCTAGTTAGATGAA-AGATTAAAGA-CGTTGAGTAAAAGATAAATGGACTAG-
* * *
3386204 T-ATGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAA
62 TAATGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGAAA
* *
3386268 AAGATAAATGACCTAGCTGTGCATTTGGCAGAAAG
127 AAGATAAATGACCTAGCTGTGCATTTGACAGAAAA
* * * **
3386303 GTGTCAATTATGCTAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGTTG
1 GTGTCAATCATGCTAGTTAGATGAAAGATTAAAGA-CGTTGAGTAAAAGATAAATGGACTAGTAA
* *
3386368 TGCATTTGGCAGAAAAGTGTCAATTATGTCAGTTAGATGAACGGTTAAAGACCGTTGAGAAAAAG
65 TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGAAAAAG
* * *
3386433 ATAAATGGA-CTAGCTTTGTATTTGATAGAAAA
130 ATAAAT-GACCTAGCTGTGCATTTGACAGAAAA
* * *
3386465 GTGTCAATCATG-TAAGTTAGATGAAAGGTTAAATGA-GTTTGGGTAAAAGACTAAA-GGAATTA
1 GTGTCAATCATGCT-AGTTAGATGAAAGATTAAA-GACG-TTGAGTAAAAGA-TAAATGG-ACTA
3386527 -TAATGCATTTGG
61 GTAATGCATTTGG
3386539 ATATAAACGG
Statistics
Matches: 205, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
161 5 0.02
162 190 0.93
163 10 0.05
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (161 bp):
GTGTCAATCATGCTAGTTAGATGAAAGATTAAAGACGTTGAGTAAAAGATAAATGGACTAGTAAT
GCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGAAAAAGA
TAAATGACCTAGCTGTGCATTTGACAGAAAA
Found at i:3387926 original size:3 final size:3
Alignment explanation
Indices: 3387918--3387943 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
3387908 CATTTCTCAC
3387918 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
3387944 ACGTTGGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:3388550 original size:20 final size:21
Alignment explanation
Indices: 3388505--3388558 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
3388495 ACTATTCAAG
3388505 TGGTATCGATACCAAGAGGGA
1 TGGTATCGATACCAAGAGGGA
* **
3388526 -AGTATCGATACCCTGA-GGA
1 TGGTATCGATACCAAGAGGGA
*
3388545 TGGTATCAATACCA
1 TGGTATCGATACCA
3388559 TTGATAACAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (21 bp):
TGGTATCGATACCAAGAGGGA
Found at i:3388610 original size:19 final size:21
Alignment explanation
Indices: 3388595--3388634 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
3388585 TGGTACCGTA
3388595 ATAG-AGTATCGATACCATAG
1 ATAGTAGTATCGATACCATAG
3388615 TATAGTAGTATCGATACCAT
1 -ATAGTAGTATCGATACCAT
3388635 GGTGGGAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
ATAGTAGTATCGATACCATAG
Found at i:3389131 original size:54 final size:55
Alignment explanation
Indices: 3388974--3389175 Score: 237
Period size: 55 Copynumber: 3.7 Consensus size: 55
3388964 ATTACTAAAT
* * *
3388974 GGCACTAGGTGTGCAAAATTAAGGAATTCATACTAAGCGTATGAATTTTCGTATG
1 GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATG
* * *
3389029 GGCACTATGTGTGCAAAACCAAGAAATTCATACTATGTGTATGAATTTTCGTATG
1 GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATG
* * * *
3389084 GGCACTCGGTGTGC-GAACTAAGAAATCCATTCTAAGTGTATGAATTTTCGTATG
1 GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATG
* * * * * *
3389138 GGAAATAGATGTACAAATA-TAAGAAGTTCATAATAAGT
1 GGCACTAGGTGTGCAAA-ACTAAGAAATTCATACTAAGT
3389176 AGGTGAATTT
Statistics
Matches: 122, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 44 0.36
55 77 0.63
56 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (55 bp):
GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTCGTATG
Found at i:3389478 original size:81 final size:81
Alignment explanation
Indices: 3389341--3389830 Score: 668
Period size: 81 Copynumber: 6.1 Consensus size: 81
3389331 ATTCTAAGAT
* * * **
3389341 TAAAAGATAAATGGTCTAGTTGTGCATTTGGCAGAAAGGTGTCAATTATGTGAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
*
3389406 GTTAAAGACTGTTGAG
66 GTTAAAGACCGTTGAG
*
3389422 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATAAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
3389487 GTTAAAGACCGTTGAG
66 GTTAAAGACCGTTGAG
* *
3389503 TAAAAGATAAATGGCCTAGTTGTGCATTTGGCAGAAATGCGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
* *
3389568 ATTAAAGACAGTTGAG
66 GTTAAAGACCGTTGAG
* * * * **
3389584 TAAAAGATAAAAGGCCTAGCTGTGCATTTGGCATAAAAGTGTCAATTATGCTAGTTAGATGAATA
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
*
3389649 GTTAAAGACCATTGAG
66 GTTAAAGACCGTTGAG
* * * * *
3389665 TAAAAGATAAATGGCCTAGCTGTGCA-AT---A-AAA-GCGTCAGTTATGCTAGTTAGATGAACA
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
* **
3389724 ATTAAAGACTATTGAG
66 GTTAAAGACCGTTGAG
** * *
3389740 TAAAAGATAAATGGCCTAGCTGTGCATTTACCAAAAATGTGTCAATTATGCCAGTTAGATGAATG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
3389805 GTTAAAGACCGTTGAG
66 GTTAAAGACCGTTGAG
3389821 TAAAAGATAA
1 TAAAAGATAA
3389831 GTAGAACGTT
Statistics
Matches: 364, Mismatches: 39, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
75 64 0.18
76 4 0.01
77 1 0.00
79 1 0.00
80 4 0.01
81 290 0.80
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (81 bp):
TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
GTTAAAGACCGTTGAG
Found at i:3389966 original size:142 final size:141
Alignment explanation
Indices: 3389704--3389969 Score: 342
Period size: 142 Copynumber: 1.9 Consensus size: 141
3389694 AAAGCGTCAG
* * *
3389704 TTATGCTAGTTAGATGAACAATTAAAGACTATTGAGTAAAAGATAAATGGCCTAGCTGTGCATTT
1 TTATGCCAGTTAGATGAACAATTAAAGACCATTGAGTAAAAGATAAATGGACTAGCTGTGCATTT
* * *
3389769 ACCAAAAATGTGTCAATTATGCCAGTTAGATGAATGGTTAAAGACCGTTGAGTAAAAGATAAGTA
66 ACCAAAAATGTGTCAATCATGCAAGTTAGATGAAAGGTTAAAGA-CGTTGAGTAAAAGATAAGTA
3389834 GAACGTTATCAA
130 GAACGTTATCAA
* * *
3389846 TTATGCCAGTTAGATGAA-AGGTTAAAGACCGTTGAGTAAAGGATAAATGGACTAGCTGTGCATT
1 TTATGCCAGTTAGATGAACA-ATTAAAGACCATTGAGTAAAAGATAAATGGACTAGCTGTGCATT
* * *
3389910 TGA-TAGAAAA-GTGTCAATCATGCAAGTTATATGAAAGGTTAAATG-CGTTTGGGTAAAAGA
65 T-ACCA-AAAATGTGTCAATCATGCAAGTTAGATGAAAGGTTAAA-GACG-TTGAGTAAAAGA
3389970 CTAAAGGAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
141 3 0.03
142 98 0.92
143 6 0.06
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (141 bp):
TTATGCCAGTTAGATGAACAATTAAAGACCATTGAGTAAAAGATAAATGGACTAGCTGTGCATTT
ACCAAAAATGTGTCAATCATGCAAGTTAGATGAAAGGTTAAAGACGTTGAGTAAAAGATAAGTAG
AACGTTATCAA
Found at i:3392847 original size:162 final size:162
Alignment explanation
Indices: 3392575--3392923 Score: 558
Period size: 162 Copynumber: 2.2 Consensus size: 162
3392565 ACCTCTAAAG
* *
3392575 GTGTTAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTG
1 GTGTCAATTATGCAAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTG
*
3392640 TGCATTTGGAAGAAAAGTGTCAATTATGCCAGTTAGATGAATGGTTAAAGACCGTTGAGTAAAAG
66 TGCATTTGGAAGAAAAGTGTCAATTATGCCAGTTAGATGAATGGTTAAACACCGTTGAGTAAAAG
* *
3392705 ATAAAT-GACCTAGCTGTGCATTTGGCA-AAAA
131 ATAAATGGA-CTAGATGTGCATTTGACAGAAAA
* * *
3392736 TGTGTCAATTATGCTAGTTAGATGAATGATTAAAGACCGTTGTGTAAAAGATAAATGGCCTAGCT
1 -GTGTCAATTATGCAAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCT
* * *
3392801 GTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAATGGTTAAACACTGTTGAGTAAAA
65 GTGCATTTGGAAGAAAAGTGTCAATTATGCCAGTTAGATGAATGGTTAAACACCGTTGAGTAAAA
3392866 GATAAATGGACTAGATGTGCATTTGACAGAAAA
130 GATAAATGGACTAGATGTGCATTTGACAGAAAA
*
3392899 GTGTCAATCATGCAAGTTAGATGAA
1 GTGTCAATTATGCAAGTTAGATGAA
3392924 AGTTTAAATG
Statistics
Matches: 173, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
162 167 0.97
163 6 0.03
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.28
Consensus pattern (162 bp):
GTGTCAATTATGCAAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTG
TGCATTTGGAAGAAAAGTGTCAATTATGCCAGTTAGATGAATGGTTAAACACCGTTGAGTAAAAG
ATAAATGGACTAGATGTGCATTTGACAGAAAA
Found at i:3392931 original size:81 final size:81
Alignment explanation
Indices: 3392575--3392923 Score: 506
Period size: 81 Copynumber: 4.3 Consensus size: 81
3392565 ACCTCTAAAG
* * *
3392575 GTGTTAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTG
1 GTGTCAATTATGCCAGTTAGATGAATGATTAAAGACCGTTGAGTAAAAGATAAATGGACTAGCTG
3392640 TGCATTTGGA-AGAAAA
66 TGCATTT-GACAGAAAA
*
3392656 GTGTCAATTATGCCAGTTAGATGAATGGTTAAAGACCGTTGAGTAAAAGATAAAT-GACCTAGCT
1 GTGTCAATTATGCCAGTTAGATGAATGATTAAAGACCGTTGAGTAAAAGATAAATGGA-CTAGCT
*
3392720 GTGCATTTGGCA-AAAA
65 GTGCATTTGACAGAAAA
* * *
3392736 TGTGTCAATTATGCTAGTTAGATGAATGATTAAAGACCGTTGTGTAAAAGATAAATGGCCTAGCT
1 -GTGTCAATTATGCCAGTTAGATGAATGATTAAAGACCGTTGAGTAAAAGATAAATGGACTAGCT
* *
3392801 GTGCATTTGGCAGAAAG
65 GTGCATTTGACAGAAAA
* * * *
3392818 GTGTCAATTATGCCAGTTAGATGAATGGTTAAACACTGTTGAGTAAAAGATAAATGGACTAGATG
1 GTGTCAATTATGCCAGTTAGATGAATGATTAAAGACCGTTGAGTAAAAGATAAATGGACTAGCTG
3392883 TGCATTTGACAGAAAA
66 TGCATTTGACAGAAAA
* *
3392899 GTGTCAATCATGCAAGTTAGATGAA
1 GTGTCAATTATGCCAGTTAGATGAA
3392924 AGTTTAAATG
Statistics
Matches: 242, Mismatches: 21, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
80 6 0.02
81 232 0.96
82 4 0.02
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.28
Consensus pattern (81 bp):
GTGTCAATTATGCCAGTTAGATGAATGATTAAAGACCGTTGAGTAAAAGATAAATGGACTAGCTG
TGCATTTGACAGAAAA
Found at i:3395443 original size:55 final size:55
Alignment explanation
Indices: 3395376--3395593 Score: 224
Period size: 55 Copynumber: 4.0 Consensus size: 55
3395366 ATTTCTAAAT
* * *
3395376 GGCACTAGGTGTGCAAAATTAAGGAATTCATACTAAGTGTATGAATTTTCGTATG
1 GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATG
* * *
3395431 GGCACTATGTGTGCAAAACCAAGAAATTCGTACTAAGTGTATGAATTTCCGTATG
1 GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATG
** * * * * *
3395486 GATACTCGGTGTGC-GAACTAAGAAATCCATTCTAACTGTATGAATTTCCGTATG
1 GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATG
* * * * * * * *
3395540 GGAAATAGATGTACAAATA-TAAGAAGTTCATAATAAGTATATGAATTTCTGTAT
1 GGCACTAGGTGTGCAAA-ACTAAGAAATTCATACTAAGTGTATGAATTTCCGTAT
3395594 TGGTAGCGGG
Statistics
Matches: 131, Mismatches: 30, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
54 42 0.32
55 88 0.67
56 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (55 bp):
GGCACTAGGTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATG
Found at i:3395878 original size:81 final size:81
Alignment explanation
Indices: 3395743--3396217 Score: 646
Period size: 81 Copynumber: 5.9 Consensus size: 81
3395733 ATTCTAAGAT
* * * *
3395743 TAAAAGATAAATAGCCTAGTTGTGAATTTGGCAGAAAGGTGTCAATTATACCAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
*
3395808 ATTAAAGACCGTTGAG
66 GTTAAAGACCGTTGAG
*
3395824 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAATG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
3395889 GTTAAAGACCGTTGAG
66 GTTAAAGACCGTTGAG
* * * * * *
3395905 TAAAGGATAAATGGCCTAGCTTTGCATTTGGCATAAAAGTGTCAATTATGCTAGTTAGATGAACA
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
*
3395970 GTTAAAGACCATTGAG
66 GTTAAAGACCGTTGAG
* * * * * *
3395986 TAAAAGATAAATGGCCTAGATGTGCATTTAGAAAAAATGTGTCAATTATGCCAGTTAGATGAATG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
*
3396051 GTTAAAGACCATTGAG
66 GTTAAAGACCGTTGAG
* * * *
3396067 TAAAAGATAAATGGACTAGCTATGCATTTGGTAGAACGGTGTCAATTATG-CAGTTAGATGAACG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
3396131 GTTAAAGACCGTTGAG
66 GTTAAAGACCGTTGAG
* * * * * * * * *
3396147 TAAAAGATAAATGGACTAGTTGGGCATTTGACAGAAAAGAGTCAATCATGCAAGTTAGATGAATG
1 TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
3396212 GTTAAA
66 GTTAAA
3396218 TGTCTTTGGG
Statistics
Matches: 348, Mismatches: 45, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 69 0.20
81 279 0.80
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (81 bp):
TAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACG
GTTAAAGACCGTTGAG
Found at i:3397531 original size:81 final size:81
Alignment explanation
Indices: 3397395--3397648 Score: 393
Period size: 81 Copynumber: 3.1 Consensus size: 81
3397385 AAGGGATACT
* *
3397395 AGTTAGATGAACGGTTAAAGACCATTGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGATAAAA
1 AGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGATAAAA
3397460 ATGTGTCAATTATGCC
66 ATGTGTCAATTATGCC
* * *
3397476 AGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTATGCATTTGGTAGAA
1 AGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGATAAAA
3397541 ATGTGTCAATTATGCC
66 ATGTGTCAATTATGCC
* * * *
3397557 AGTTAGATGAATGATTAAAGACCGTTGAGTAAAAGATAAATGGACTAGCTGTGCATTTGACAGAA
1 AGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGATA-AA
* *
3397622 AA-GTGTCAATCATGCA
65 AATGTGTCAATTATGCC
3397638 AGTTAGATGAA
1 AGTTAGATGAA
3397649 ATGTTAAATG
Statistics
Matches: 158, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
81 155 0.98
82 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (81 bp):
AGTTAGATGAACGGTTAAAGACCGTTGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGATAAAA
ATGTGTCAATTATGCC
Found at i:3398727 original size:33 final size:34
Alignment explanation
Indices: 3398688--3398768 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
3398678 ACAATTTTAT
*
3398688 AAATAAAAATATTAAGAT-TATT-ATCT-TTTATTA
1 AAATAAAAATATTAA-ATGTATTAAT-TGTTTACTA
* *
3398721 AAATAAAAAAATTAATTGTATTAATTGTTTACTA
1 AAATAAAAATATTAAATGTATTAATTGTTTACTA
3398755 AAATAAAAATATTA
1 AAATAAAAATATTA
3398769 TATTAATAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 1 0.02
33 19 0.46
34 21 0.51
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (34 bp):
AAATAAAAATATTAAATGTATTAATTGTTTACTA
Found at i:3398837 original size:8 final size:8
Alignment explanation
Indices: 3398810--3398847 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
3398800 ATAAGAATAT
*
3398810 TATTATTA
1 TATTATAA
*
3398818 TATTACAA
1 TATTATAA
3398826 -ATTATAA
1 TATTATAA
3398833 TATTATAA
1 TATTATAA
3398841 TATTATA
1 TATTATA
3398848 TTGTATTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (8 bp):
TATTATAA
Found at i:3408914 original size:31 final size:31
Alignment explanation
Indices: 3408879--3408954 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
3408869 GTAACTTTTA
* * *
3408879 ATAGTCAAGGGACTTAATAAAATAGTACCCT
1 ATAGTCAAGGGACCTAATAAAACAATACCCT
3408910 ATAGTCAAGGGACCTAATAAAACAATACCCT
1 ATAGTCAAGGGACCTAATAAAACAATACCCT
3408941 ATAGTCAAGGGACC
1 ATAGTCAAGGGACC
3408955 ATTTGCGCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (31 bp):
ATAGTCAAGGGACCTAATAAAACAATACCCT
Found at i:3409321 original size:23 final size:21
Alignment explanation
Indices: 3409275--3409322 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
3409265 AATGATCAAA
*
3409275 AAAAGAGAAAAAATGTGTTCT
1 AAAAGAGAAAAAATGTGTCCT
3409296 AAAAGTAGAAAAATATGTG-CCAT
1 AAAAG-AGAAAAA-ATGTGTCC-T
3409319 AAAA
1 AAAA
3409323 ACAAACTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 5 0.22
22 8 0.35
23 10 0.43
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.21
Consensus pattern (21 bp):
AAAAGAGAAAAAATGTGTCCT
Found at i:3409435 original size:22 final size:21
Alignment explanation
Indices: 3409406--3409447 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
3409396 GCCTGTAAAT
3409406 GAACCGAACGAACACGAACAC
1 GAACCGAACGAACACGAACAC
*
3409427 GAACACGAATGAACACGAACA
1 GAAC-CGAACGAACACGAACA
3409448 ACGATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.50, C:0.29, G:0.19, T:0.02
Consensus pattern (21 bp):
GAACCGAACGAACACGAACAC
Found at i:3413629 original size:28 final size:28
Alignment explanation
Indices: 3413568--3413699 Score: 219
Period size: 28 Copynumber: 4.7 Consensus size: 28
3413558 CTTTTTAAAA
* *
3413568 TAATTACCAAAATAGCACCCTTTTCGAAT
1 TAATTCCCAAAATAGCA-CCATTTCGAAT
3413597 TAATTCCCAAAATAGCACCATTTCGAAT
1 TAATTCCCAAAATAGCACCATTTCGAAT
3413625 TAATTCCCAAAATAGCACCATTTCGAAT
1 TAATTCCCAAAATAGCACCATTTCGAAT
* *
3413653 TAATTCCCAAAATAACACCATTTTGAAT
1 TAATTCCCAAAATAGCACCATTTCGAAT
3413681 TAATTCCCAAAATAGCACC
1 TAATTCCCAAAATAGCACC
3413700 CGGTCAACGA
Statistics
Matches: 98, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 82 0.84
29 16 0.16
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (28 bp):
TAATTCCCAAAATAGCACCATTTCGAAT
Found at i:3413723 original size:17 final size:18
Alignment explanation
Indices: 3413701--3413741 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
3413691 AATAGCACCC
3413701 GGTCAAC-GATCGGGTCA
1 GGTCAACGGATCGGGTCA
* *
3413718 GGTCAACGGGTCGGGTCG
1 GGTCAACGGATCGGGTCA
3413736 GGTCAA
1 GGTCAA
3413742 AACCGGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.20, C:0.22, G:0.41, T:0.17
Consensus pattern (18 bp):
GGTCAACGGATCGGGTCA
Done.