Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008826.1 Hibiscus syriacus cultivar Beakdansim tig00112000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3884024
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 18
Found at i:1439582 original size:2 final size:2
Alignment explanation
Indices: 1439575--1439603 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1439565 ACAACAAAGG
1439575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1439604 AAAGGATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1442634 original size:28 final size:26
Alignment explanation
Indices: 1442587--1442638 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
1442577 GATGTAAATT
*
1442587 TAAAAATGTAAATGTAAATACAAACG
1 TAAAAATGTAAATGCAAATACAAACG
1442613 TAAAAATGTACAAATGCAAATACAAA
1 TAAAAATGT--AAATGCAAATACAAA
1442639 TGCATGTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.39
28 14 0.61
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.21
Consensus pattern (26 bp):
TAAAAATGTAAATGCAAATACAAACG
Found at i:1444101 original size:17 final size:19
Alignment explanation
Indices: 1444069--1444116 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
1444059 TTAATACCTG
* * *
1444069 AATAAAAAAAACAAT-ATT
1 AATAATAAAAATAATAATA
1444087 AAT-ATAAAAATAATAATA
1 AATAATAAAAATAATAATA
1444105 AATAATAAAAAT
1 AATAATAAAAAT
1444117 TTGAAAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 9 0.36
18 8 0.32
19 8 0.32
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (19 bp):
AATAATAAAAATAATAATA
Found at i:1444104 original size:20 final size:19
Alignment explanation
Indices: 1444069--1444116 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
1444059 TTAATACCTG
*
1444069 AATAAAAAAAACAATATTAAT
1 AATAAAAATAACAATA--AAT
*
1444090 -ATAAAAATAATAATAAAT
1 AATAAAAATAACAATAAAT
1444108 AATAAAAAT
1 AATAAAAAT
1444117 TTGAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 8 0.33
20 13 0.54
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (19 bp):
AATAAAAATAACAATAAAT
Found at i:1444789 original size:14 final size:15
Alignment explanation
Indices: 1444756--1444801 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
1444746 TTTTCTTCGA
*
1444756 TATTGAAAAATAAA-
1 TATTTAAAAATAAAT
*
1444770 TA-TT-AAAATAATT
1 TATTTAAAAATAAAT
1444783 TATTTAAAAATAAAT
1 TATTTAAAAATAAAT
1444798 TATT
1 TATT
1444802 ATTTATTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
12 7 0.27
13 3 0.12
14 4 0.15
15 12 0.46
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
TATTTAAAAATAAAT
Found at i:1446169 original size:3 final size:3
Alignment explanation
Indices: 1446161--1446289 Score: 161
Period size: 3 Copynumber: 43.3 Consensus size: 3
1446151 ATATATATAT
* *
1446161 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- TTT ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
1446208 ATA ATT ATA ATA ATA ATA ATA ATA ATA TTT ATA GTA ATA ATA ATA ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
1446256 ATT ATT ATT ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1446290 ATCAAAATGG
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
2 1 0.01
3 111 0.99
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (3 bp):
ATA
Found at i:1451262 original size:31 final size:30
Alignment explanation
Indices: 1451224--1451281 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
1451214 AATTTTTTAA
1451224 ATATTCTCATATTTAATTAGTAACTTTTAGT
1 ATATTCTCATATTTAATTA-TAACTTTTAGT
* *
1451255 ATATTCTCGTATTTAATTATGACTTTT
1 ATATTCTCATATTTAATTATAACTTTT
1451282 GTGACTATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.53
Consensus pattern (30 bp):
ATATTCTCATATTTAATTATAACTTTTAGT
Found at i:1453248 original size:23 final size:23
Alignment explanation
Indices: 1453218--1453266 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
1453208 TGGTGGTTTG
*
1453218 TTTAATGG-ATGTTTAGACTTTAT
1 TTTAATGGTATATTTA-ACTTTAT
*
1453241 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
1453264 TTT
1 TTT
1453267 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:1453771 original size:11 final size:11
Alignment explanation
Indices: 1453755--1453784 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
1453745 TTCTTTTCAT
*
1453755 TTTATTTGTTG
1 TTTATTTATTG
1453766 TTTATTTATTG
1 TTTATTTATTG
1453777 TTTATTTA
1 TTTATTTA
1453785 CCATTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (11 bp):
TTTATTTATTG
Found at i:1455582 original size:21 final size:21
Alignment explanation
Indices: 1455556--1455599 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1455546 CAATTAAGAA
* *
1455556 TCAAGGAGCTTTACTTCATAG
1 TCAAGGAGCCTTACTTCAAAG
*
1455577 TCAAGGCGCCTTACTTCAAAG
1 TCAAGGAGCCTTACTTCAAAG
1455598 TC
1 TC
1455600 CTAGCTCATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (21 bp):
TCAAGGAGCCTTACTTCAAAG
Found at i:1459930 original size:20 final size:20
Alignment explanation
Indices: 1459907--1459951 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
1459897 TTAACTTTTT
*
1459907 CTTTTCTCTTTC-TTCCTTAA
1 CTTTTCTATTTCATT-CTTAA
*
1459927 CTTTTCTATTTCATTTTTAA
1 CTTTTCTATTTCATTCTTAA
1459947 CTTTT
1 CTTTT
1459952 ACTTTTTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTTCTATTTCATTCTTAA
Found at i:1463758 original size:11 final size:11
Alignment explanation
Indices: 1463742--1463772 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
1463732 TTCTTTTCAT
1463742 TTTATTTACTG
1 TTTATTTACTG
*
1463753 TTTATTTATTG
1 TTTATTTACTG
1463764 TTTATTTAC
1 TTTATTTAC
1463773 CATTTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (11 bp):
TTTATTTACTG
Found at i:1464770 original size:23 final size:23
Alignment explanation
Indices: 1464743--1464805 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
1464733 CATTTTATAT
1464743 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* *
1464766 GGCACTTCGGTGCAATTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
*
1464789 GGCACTTCAGTGCATTT
1 GGCACTTCGGTGCATTT
1464806 ATTCGAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:1466056 original size:19 final size:18
Alignment explanation
Indices: 1466029--1466067 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
1466019 TCAGGGTATA
*
1466029 ATTTATTCCTGGGAGTAAT
1 ATTTATTCCTGAGAG-AAT
*
1466048 ATTTTTTCCTGAGAGAAT
1 ATTTATTCCTGAGAGAAT
1466066 AT
1 AT
1466068 ACCCATGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (18 bp):
ATTTATTCCTGAGAGAAT
Found at i:1469453 original size:14 final size:14
Alignment explanation
Indices: 1469430--1469461 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1469420 TTCTCGATGA
*
1469430 ATTTTTATTTAAAT
1 ATTTTCATTTAAAT
1469444 ATTTTCATTTAAAT
1 ATTTTCATTTAAAT
1469458 ATTT
1 ATTT
1469462 AGAATTCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTTCATTTAAAT
Found at i:1475551 original size:38 final size:38
Alignment explanation
Indices: 1475508--1475586 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
1475498 TGACCGTCAG
1475508 TATCTGTGTTTTTCCTTTGCTTTATGATAATGTATATT
1 TATCTGTGTTTTTCCTTTGCTTTATGATAATGTATATT
*
1475546 TATCTGTGTTTTTCCTTTGCTTTATGATAATGTATCTT
1 TATCTGTGTTTTTCCTTTGCTTTATGATAATGTATATT
1475584 TAT
1 TAT
1475587 TTTTTCCTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.18, C:0.11, G:0.13, T:0.58
Consensus pattern (38 bp):
TATCTGTGTTTTTCCTTTGCTTTATGATAATGTATATT
Found at i:1475596 original size:33 final size:35
Alignment explanation
Indices: 1475514--1475596 Score: 116
Period size: 38 Copynumber: 2.3 Consensus size: 35
1475504 TCAGTATCTG
1475514 TGTTTTTCCTTTGCTTTATGATAATGTATATTTATCT
1 TGTTTTTCCTTTGCTTTATGATAATGTATATTTA--T
*
1475551 GTGTTTTTCCTTTGCTTTATGATAATGTATCTTTA-
1 -TGTTTTTCCTTTGCTTTATGATAATGTATATTTAT
1475586 T-TTTTTCCTTT
1 TGTTTTTCCTTT
1475597 TGTTTTTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
33 10 0.23
34 1 0.02
38 33 0.75
ACGTcount: A:0.16, C:0.12, G:0.11, T:0.61
Consensus pattern (35 bp):
TGTTTTTCCTTTGCTTTATGATAATGTATATTTAT
Found at i:1475783 original size:21 final size:21
Alignment explanation
Indices: 1475757--1475854 Score: 69
Period size: 21 Copynumber: 4.7 Consensus size: 21
1475747 ATCAGTTCCC
1475757 AGAATCGCAACGCGATTATGA
1 AGAATCGCAACGCGATTATGA
*
1475778 AGAATCGCAATGCGA-TA-GTA
1 AGAATCGCAACGCGATTATG-A
* ** * * *
1475798 CA-AATTAGCATTGCTATTTTCA
1 -AGAA-TCGCAACGCGATTATGA
*
1475820 AGAATCGCAACGCGAATATGA
1 AGAATCGCAACGCGATTATGA
1475841 A-AATCGCAACGCGA
1 AGAATCGCAACGCGA
1475855 ACATATAAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 13
0.69 0.15 0.15
Matches are distributed among these distances:
19 1 0.02
20 18 0.31
21 35 0.60
22 4 0.07
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.21
Consensus pattern (21 bp):
AGAATCGCAACGCGATTATGA
Found at i:1475847 original size:20 final size:20
Alignment explanation
Indices: 1475822--1476035 Score: 207
Period size: 20 Copynumber: 10.7 Consensus size: 20
1475812 TATTTTCAAG
* *
1475822 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGTA
* **
1475842 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAATACGTA
* **
1475862 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAATACGTA
* *
1475882 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
*
1475902 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGTA
*
1475922 AATCGCAACGCGTAT-CTGTA
1 AATCGCAACGCGAATAC-GTA
* *
1475942 TATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGTA
** * *
1475962 AATCGCAATACGTATCCGTA
1 AATCGCAACGCGAATACGTA
1475982 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACGT-A
* *
1476003 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
1476023 AATCGCAACGCGA
1 AATCGCAACGCGA
1476036 TTTTTAAAGC
Statistics
Matches: 160, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
19 1 0.01
20 141 0.88
21 18 0.11
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (20 bp):
AATCGCAACGCGAATACGTA
Found at i:1475917 original size:80 final size:80
Alignment explanation
Indices: 1475822--1476032 Score: 253
Period size: 80 Copynumber: 2.6 Consensus size: 80
1475812 TATTTTCAAG
* * * *
1475822 AATCGCAACGCGAATATGAAAATCGCAACGCG-AACATATAAATCGCAACGCGAACATATAAATC
1 AATCGCAACGAGAATACGAAAATCGCAACGCGTAAC-TATAAATCGCAACGAGAACACATAAATC
*
1475886 GCAACGCGTATCCGTA
65 GCAACACGTATCCGTA
* * * * * *
1475902 AATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTATATCGCAACGAGAATACGTAAATCG
1 AATCGCAACGAGAATACGAAAATCGCAACGCGTAACTATAAATCGCAACGAGAACACATAAATCG
*
1475967 CAATACGTATCCGTA
66 CAACACGTATCCGTA
* * **
1475982 AATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACG
1 AATCGCAACGAGAATACG-AAAATCGCAACGCGTAACTATAAATCGCAACG
1476033 CGATTTTTAA
Statistics
Matches: 113, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 82 0.73
81 31 0.27
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (80 bp):
AATCGCAACGAGAATACGAAAATCGCAACGCGTAACTATAAATCGCAACGAGAACACATAAATCG
CAACACGTATCCGTA
Found at i:1477760 original size:94 final size:93
Alignment explanation
Indices: 1477599--1477972 Score: 519
Period size: 92 Copynumber: 4.1 Consensus size: 93
1477589 TAGATTGCTT
* * * * *
1477599 AGTAAATTTATCTGGTTGCTGCCAATACTACTAAACTGTTTATTCTTTAACATTGTGAAGTTAGT
1 AGTAAATTTATTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
1477664 ATTTGTCTTTTGTTTTGTCTTTTGATTG-A
66 ATTTGTC-TTTG-TTTGTCTTTTGGTTGAA
*
1477693 AGTAAATTTATTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTATGAAGTTAGT
1 AGTAAATTTATTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
1477758 ATTTATC-TTGTTTGTCTTTTTGGTTGAA
66 ATTTGTCTTTGTTTGTC-TTTTGGTTGAA
* * *
1477786 AGTAAATTT-GTTCGTTGCTGCCAATTCTGCTAAAATGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
1477850 ATTTGTATTTGTTTTGTC-TTTGGTTGAA
66 ATTTGTCTTTG-TTTGTCTTTTGGTTGAA
* * * *
1477878 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCT-AACTGTGTATTC-TTAATACTCTGAAGTTAGT
1 AGTAAATTTATTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1477941 ATTTGTCTTTGTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTGTCTTTTGGTTGAA
1477968 AGTAA
1 AGTAA
1477973 TGTAATCCAT
Statistics
Matches: 253, Mismatches: 21, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
90 12 0.05
91 41 0.16
92 97 0.38
93 32 0.13
94 71 0.28
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (93 bp):
AGTAAATTTATTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTGTCTTTTGGTTGAA
Found at i:1478076 original size:19 final size:17
Alignment explanation
Indices: 1478060--1478109 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 17
1478050 AAAAATGACT
1478060 ATCGCAACGCGAAATGA
1 ATCGCAACGCGAAATGA
*
1478077 ATCGCAACGAGAAATGAAA
1 ATCGCAACGCGAAATG--A
1478096 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
1478110 CCAAAATCGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 15 0.52
19 14 0.48
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.10
Consensus pattern (17 bp):
ATCGCAACGCGAAATGA
Found at i:1478115 original size:19 final size:19
Alignment explanation
Indices: 1478076--1478181 Score: 123
Period size: 19 Copynumber: 5.8 Consensus size: 19
1478066 ACGCGAAATG
* **
1478076 AATCGCAACGAGAAATGAA
1 AATCGCAACGCGAAACCAA
1478095 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
1478114 AATCGCAA--CG--A-CAA
1 AATCGCAACGCGAAACCAA
1478128 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
* *
1478147 AATCGCAACGCGAAACTAT
1 AATCGCAACGCGAAACCAA
*
1478166 AATCACAACGCGAAAC
1 AATCGCAACGCGAAAC
1478182 TATAATCGCG
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
14 11 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 59 0.78
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.08
Consensus pattern (19 bp):
AATCGCAACGCGAAACCAA
Found at i:1478118 original size:38 final size:38
Alignment explanation
Indices: 1478020--1478190 Score: 133
Period size: 38 Copynumber: 4.6 Consensus size: 38
1478010 TAGTTTACTT
* * * **
1478020 TCGCAACACGAAACTTAAAATCGCAACGTGAAAAATGACTA
1 TCGCAACGCGAAAC-CAAAATCGCAAC--GAGAAATGAAAA
**
1478061 TCGCAACGCGAAA--TGAATCGCAACGAGAAATGAAAA
1 TCGCAACGCGAAACCAAAATCGCAACGAGAAATGAAAA
*
1478097 TCGCAACGCGAAACCAAAATCGCAAC--G--A-CAAAA
1 TCGCAACGCGAAACCAAAATCGCAACGAGAAATGAAAA
* *
1478130 TCGCAACGCGAAACCAAAATCGCAACGCGAAACT-ATAA
1 TCGCAACGCGAAACCAAAATCGCAACGAGAAA-TGAAAA
* * *
1478168 TCACAACGCGAAACTATAATCGC
1 TCGCAACGCGAAACCAAAATCGC
1478191 GTTGCGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 19
0.77 0.09 0.13
Matches are distributed among these distances:
33 30 0.28
34 1 0.01
35 1 0.01
36 23 0.21
37 1 0.01
38 41 0.38
41 12 0.11
ACGTcount: A:0.46, C:0.26, G:0.16, T:0.12
Consensus pattern (38 bp):
TCGCAACGCGAAACCAAAATCGCAACGAGAAATGAAAA
Found at i:1478128 original size:14 final size:14
Alignment explanation
Indices: 1478111--1478137 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1478101 AACGCGAAAC
1478111 CAAAATCGCAACGA
1 CAAAATCGCAACGA
1478125 CAAAATCGCAACG
1 CAAAATCGCAACG
1478138 CGAAACCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (14 bp):
CAAAATCGCAACGA
Found at i:1478135 original size:33 final size:33
Alignment explanation
Indices: 1478093--1478156 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
1478083 ACGAGAAATG
1478093 AAAATCGCAACGCGAAACCAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACCAAAATCGCAACGAC
1478126 AAAATCGCAACGCGAAACCAAAATCGCAACG
1 AAAATCGCAACGCGAAACCAAAATCGCAACG
1478157 CGAAACTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.48, C:0.30, G:0.16, T:0.06
Consensus pattern (33 bp):
AAAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:1478175 original size:52 final size:52
Alignment explanation
Indices: 1478076--1478175 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
1478066 ACGCGAAATG
** *
1478076 AATCGCAACGAGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACGACAA
1 AATCGCAACGAGAAACCAAAATCGCAACGCGAAACCAAAATCACAACGACAA
* * *
1478128 AATCGCAACGCGAAACCAAAATCGCAACGCGAAACTATAATCACAACG
1 AATCGCAACGAGAAACCAAAATCGCAACGCGAAACCAAAATCACAACG
1478176 CGAAACTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (52 bp):
AATCGCAACGAGAAACCAAAATCGCAACGCGAAACCAAAATCACAACGACAA
Found at i:1478182 original size:19 final size:19
Alignment explanation
Indices: 1478020--1478190 Score: 117
Period size: 19 Copynumber: 9.2 Consensus size: 19
1478010 TAGTTTACTT
* *
1478020 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-TATAA
* *
1478040 TCGCAACGTGAAA-AATGACTA
1 TCGCAACGCGAAACTAT-A--A
*
1478061 TCGCAACGCGAAA-T-GAA
1 TCGCAACGCGAAACTATAA
* *
1478078 TCGCAACGAGAAA-TGAAAA
1 TCGCAACGCGAAACT-ATAA
* *
1478097 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACTATAA
*
1478116 TCGCAA--CG--AC-AAAA
1 TCGCAACGCGAAACTATAA
* *
1478130 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACTATAA
1478149 TCGCAACGCGAAACTATAA
1 TCGCAACGCGAAACTATAA
*
1478168 TCACAACGCGAAACTATAA
1 TCGCAACGCGAAACTATAA
1478187 TCGC
1 TCGC
1478191 GTTGCGATTT
Statistics
Matches: 125, Mismatches: 15, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
14 10 0.08
15 2 0.02
16 2 0.02
17 16 0.13
18 3 0.02
19 68 0.54
20 11 0.09
21 13 0.10
ACGTcount: A:0.46, C:0.26, G:0.16, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAACTATAA
Found at i:1478266 original size:20 final size:20
Alignment explanation
Indices: 1478243--1478311 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
1478233 GTCAAATTAT
*
1478243 CATTGTGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
1478263 CATTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
1478283 CATTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
*
1478303 CGTTGCGAT
1 CATTGCGAT
1478312 TTTAAGTTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (20 bp):
CATTGCGATAGTCATTTTCG
Found at i:1478269 original size:40 final size:40
Alignment explanation
Indices: 1478225--1478311 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
1478215 GATTCTCTCG
* *
1478225 TTGCGATAGTCAAATTATCATTGTGATAGTCATTTTCGCA
1 TTGCGATAGTCAAATTAGCATTGCGATAGTCATTTTCGCA
** * *
1478265 TTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTAGCATTGCGATAGTCATTTTCGCA
1478305 TTGCGAT
1 TTGCGAT
1478312 TTTAAGTTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (40 bp):
TTGCGATAGTCAAATTAGCATTGCGATAGTCATTTTCGCA
Found at i:1479619 original size:33 final size:33
Alignment explanation
Indices: 1479569--1479664 Score: 120
Period size: 33 Copynumber: 2.8 Consensus size: 33
1479559 CAAACAGACT
* **
1479569 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
*
1479603 ATCGCAATGCGAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
1479636 ATCGCAATTCGAAAATAAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
1479665 CGAAACTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 30 0.55
34 25 0.45
ACGTcount: A:0.43, C:0.21, G:0.22, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1480908 original size:22 final size:25
Alignment explanation
Indices: 1480882--1480943 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 25
1480872 TTTAATTGAC
1480882 ATTATTATTATAATATA-TAAA-A-
1 ATTATTATTATAATATATTAAATAT
*
1480904 ATTATAATTCA-AATATATTTAAATAT
1 ATTATTATT-ATAATATA-TTAAATAT
1480930 ATTATT-TTATAATA
1 ATTATTATTATAATA
1480944 ATGTTAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
22 14 0.44
23 1 0.03
24 5 0.16
25 7 0.22
26 5 0.16
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTATTATTATAATATATTAAATAT
Found at i:1481300 original size:20 final size:20
Alignment explanation
Indices: 1481277--1481425 Score: 165
Period size: 20 Copynumber: 7.3 Consensus size: 20
1481267 AAAAATCTCA
* *
1481277 TTGCGATTTACGTATTCTCG
1 TTGCGATTTACGGATACTCG
*
1481297 TTGCGATTTACAGATACGT-G
1 TTGCGATTTACGGATAC-TCG
* *
1481317 TTGCGATTTACGTATTCTCG
1 TTGCGATTTACGGATACTCG
*
1481337 TTGCGATTTACGGATACGCG
1 TTGCGATTTACGGATACTCG
* * **
1481357 TTACGATTTTACGTATTGTCG
1 TTGCGA-TTTACGGATACTCG
*
1481378 TTGCGATTTACGGATACGCG
1 TTGCGATTTACGGATACTCG
1481398 TTGCGATTTTACGGATACTCG
1 TTGCGA-TTTACGGATACTCG
1481419 TTGCGAT
1 TTGCGAT
1481426 AGTCAGAATC
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.01
20 69 0.66
21 35 0.33
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (20 bp):
TTGCGATTTACGGATACTCG
Found at i:1481380 original size:41 final size:41
Alignment explanation
Indices: 1481277--1481425 Score: 230
Period size: 41 Copynumber: 3.7 Consensus size: 41
1481267 AAAAATCTCA
* *
1481277 TTGCGA-TTTACGTATTCTCGTTGCGATTTACAGATACGTG
1 TTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCG
1481317 TTGCGA-TTTACGTATTCTCGTTGCGATTTACGGATACGCG
1 TTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCG
* *
1481357 TTACGATTTTACGTATTGTCGTTGCGATTTACGGATACGCG
1 TTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCG
* *
1481398 TTGCGATTTTACGGATACTCGTTGCGAT
1 TTGCGATTTTACGTATTCTCGTTGCGAT
1481426 AGTCAGAATC
Statistics
Matches: 100, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 43 0.43
41 57 0.57
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (41 bp):
TTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCG
Found at i:1481457 original size:20 final size:20
Alignment explanation
Indices: 1481434--1481483 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1481424 ATAGTCAGAA
*
1481434 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
*
1481454 TCGCGTTGCAATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
1481474 TCGCGTTGCG
1 TCGCGTTGCG
1481484 GTTCTGGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.14, C:0.20, G:0.24, T:0.42
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:1481588 original size:20 final size:19
Alignment explanation
Indices: 1481536--1481589 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
1481526 ATTCTTCATA
1481536 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* *
1481555 AACTG-GTTTACGATTCTGGAG
1 ATC-GCG-TTGCGATTCTGG-G
1481576 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
1481590 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
19 3 0.11
20 20 0.74
21 4 0.15
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:1483672 original size:22 final size:21
Alignment explanation
Indices: 1483645--1483686 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1483635 ATTTATTAAG
1483645 AATAATAGTTTATAAACTATTA
1 AATAATAGTTTA-AAACTATTA
* *
1483667 AATAATATTTTAAAATTATT
1 AATAATAGTTTAAAACTATT
1483687 TTTTTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
AATAATAGTTTAAAACTATTA
Found at i:1486241 original size:21 final size:21
Alignment explanation
Indices: 1486215--1486255 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1486205 TTTGAATTTA
* *
1486215 ATGAAGGTGTATCGATACCCT
1 ATGAAGGGGTACCGATACCCT
1486236 ATGAAGGGGTACCGATACCC
1 ATGAAGGGGTACCGATACCC
1486256 CATGTTATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (21 bp):
ATGAAGGGGTACCGATACCCT
Found at i:1486521 original size:20 final size:20
Alignment explanation
Indices: 1486482--1486520 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1486472 CCAACAATTG
1486482 GTAACAATTGGTATCCTTTT
1 GTAACAATTGGTATCCTTTT
1486502 GTAACAATTGGTAT-CTTTT
1 GTAACAATTGGTATCCTTTT
1486521 TCATTAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (20 bp):
GTAACAATTGGTATCCTTTT
Found at i:1486977 original size:21 final size:21
Alignment explanation
Indices: 1486951--1487005 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
1486941 ATTTAATGAA
1486951 GGTACCGATACCCTATGAAGG
1 GGTACCGATACCCTATGAAGG
1486972 GGTACCGATACCCTATGAAGG
1 GGTACCGATACCCTATGAAGG
1486993 GGTACCGATACCC
1 GGTACCGATACCC
1487006 AATGTTATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (21 bp):
GGTACCGATACCCTATGAAGG
Found at i:1490033 original size:20 final size:20
Alignment explanation
Indices: 1490010--1490054 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1490000 TTTTCATATA
1490010 TTTTCCAACAATTGGTATCC
1 TTTTCCAACAATTGGTATCC
** *
1490030 TTTTGTAACAATTGGTATCT
1 TTTTCCAACAATTGGTATCC
1490050 TTTTC
1 TTTTC
1490055 ATTAAGCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.18, G:0.11, T:0.49
Consensus pattern (20 bp):
TTTTCCAACAATTGGTATCC
Found at i:1490504 original size:21 final size:21
Alignment explanation
Indices: 1490478--1490518 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1490468 TTTGAATTTA
*
1490478 ATGAAGGTGTACCGATACCCT
1 ATGAAGGGGTACCGATACCCT
1490499 ATGAAGGGGTACCGATACCC
1 ATGAAGGGGTACCGATACCC
1490519 CATATTATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (21 bp):
ATGAAGGGGTACCGATACCCT
Found at i:1495814 original size:14 final size:14
Alignment explanation
Indices: 1495795--1495824 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
1495785 ATTTTTCTAA
1495795 ATCCATATATATAT
1 ATCCATATATATAT
1495809 ATCCATATATATAT
1 ATCCATATATATAT
1495823 AT
1 AT
1495825 ATATTGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
ATCCATATATATAT
Found at i:1498263 original size:30 final size:29
Alignment explanation
Indices: 1498222--1498299 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 29
1498212 CTTTTACATT
*
1498222 TAAGTACCTAAAGTATTTTTTGGATCAAAA
1 TAAGTACCTAAAGTATTTTTT-CATCAAAA
* * *
1498252 TAAGTATCTAAATTTATCTTTTTCTTCAAAA
1 TAAGTACCTAAA-GTAT-TTTTTCATCAAAA
*
1498283 TAGGTACCTAAAGTATT
1 TAAGTACCTAAAGTATT
1498300 CAATTTGTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
29 1 0.03
30 14 0.36
31 19 0.49
32 5 0.13
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (29 bp):
TAAGTACCTAAAGTATTTTTTCATCAAAA
Found at i:1498416 original size:28 final size:28
Alignment explanation
Indices: 1498384--1498438 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
1498374 AAAACTTAAA
*
1498384 ACTTTAGGTACTTATTTTGACCAAAAAT
1 ACTTTAGGTACCTATTTTGACCAAAAAT
1498412 ACTTTAGGTACCTATTTTGACCAAAAA
1 ACTTTAGGTACCTATTTTGACCAAAAA
1498439 GATAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (28 bp):
ACTTTAGGTACCTATTTTGACCAAAAAT
Found at i:1502581 original size:36 final size:36
Alignment explanation
Indices: 1502534--1502605 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
1502524 CCTAGCATTC
* *
1502534 GCCAAGAACCAGATTCGGATCATGTTGCCTCTGAAA
1 GCCAAAAACCAGATTCGGATCATGTTGCATCTGAAA
* *
1502570 GCCAAAAACCAGATTTGGATCCTGTTGCATCTGAAA
1 GCCAAAAACCAGATTCGGATCATGTTGCATCTGAAA
1502606 CAGAAGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (36 bp):
GCCAAAAACCAGATTCGGATCATGTTGCATCTGAAA
Found at i:1503853 original size:21 final size:20
Alignment explanation
Indices: 1503813--1503856 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
1503803 TCATGTAATA
*
1503813 TTTTTTACATTTTATGTATT
1 TTTTTTACATTTTATATATT
1503833 TTTTTTAC-TTTAGTATATATT
1 TTTTTTACATTT--TATATATT
1503854 TTT
1 TTT
1503857 ATTTTTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 8 0.38
21 10 0.48
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTTTACATTTTATATATT
Found at i:1503855 original size:19 final size:21
Alignment explanation
Indices: 1503805--1503856 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
1503795 CTTTTTTTTC
1503805 ATGTA-ATATTTTTTACATTTT
1 ATGTATATATTTTTTACA-TTT
1503826 ATGTAT-T-TTTTTTAC-TTT
1 ATGTATATATTTTTTACATTT
1503844 A-GTATATATTTTT
1 ATGTATATATTTTT
1503857 ATTTTTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 4 0.14
18 5 0.18
19 5 0.18
20 8 0.29
21 6 0.21
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (21 bp):
ATGTATATATTTTTTACATTT
Found at i:1503961 original size:31 final size:30
Alignment explanation
Indices: 1503923--1504026 Score: 106
Period size: 30 Copynumber: 3.3 Consensus size: 30
1503913 TTTATATATA
1503923 TATATATATACTATTTTTTATTTTTTATTTT
1 TATATATATA-TATTTTTTATTTTTTATTTT
*
1503954 TATATATATATATTTATTA-TTTTTACTTTT
1 TATATATATATATTTTTTATTTTTTA-TTTT
1503984 T-TAT-TATTATTATTTATTTATTTATTTATTTAT
1 TATATATA-TA-TATTT-TTTATTT-TTTATTT-T
*
1504017 TTTATATATA
1 TATATATATA
1504027 GTTTTTCTTC
Statistics
Matches: 62, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
28 2 0.03
29 11 0.18
30 18 0.29
31 13 0.21
32 5 0.08
33 6 0.10
34 5 0.08
35 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (30 bp):
TATATATATATATTTTTTATTTTTTATTTT
Found at i:1503971 original size:4 final size:4
Alignment explanation
Indices: 1503934--1504018 Score: 67
Period size: 4 Copynumber: 22.2 Consensus size: 4
1503924 ATATATATAC
* * *
1503934 TATT T-TT TATT T-TT TATT T-TT ATATA TATA TATT TATT ATTTT TACTT
1 TATT TATT TATT TATT TATT TATT -TATT TATT TATT TATT -TATT TA-TT
1503982 T-TT TA-T TA-T TA-T TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT T
1504019 TATATATAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
3 20 0.29
4 42 0.61
5 7 0.10
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:1503986 original size:17 final size:17
Alignment explanation
Indices: 1503937--1504018 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 17
1503927 TATATACTAT
1503937 TTTTTATTT-TTTATT-
1 TTTTTATTTATTTATTA
1503952 TTTATATATATATATTTATTA
1 TTT-T-TAT-T-TATTTATTA
1503973 TTTTTACTTT-TTTATTA
1 TTTTTA-TTTATTTATTA
*
1503990 TTATTATTTATTTATT-
1 TTTTTATTTATTTATTA
*
1504006 TATTTATTTATTT
1 TTTTTATTTATTT
1504019 TATATATAGT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
15 3 0.05
16 15 0.27
17 21 0.38
18 2 0.04
19 4 0.07
20 8 0.14
21 3 0.05
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTATTTATTTATTA
Found at i:1507177 original size:13 final size:12
Alignment explanation
Indices: 1507150--1507215 Score: 69
Period size: 12 Copynumber: 5.3 Consensus size: 12
1507140 AGATTCAATC
*
1507150 AAAACAAAAAGA
1 AAAAAAAAAAGA
*
1507162 AAAAAAAAGAGA
1 AAAAAAAAAAGA
**
1507174 AAAAAGCAAAGA
1 AAAAAAAAAAGA
*
1507186 GAAAAAACAAAGA
1 -AAAAAAAAAAGA
1507199 AAAAAAACAAAGA
1 AAAAAAA-AAAGA
1507212 AAAA
1 AAAA
1507216 TTGAAGAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
12 25 0.56
13 20 0.44
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:1507178 original size:14 final size:13
Alignment explanation
Indices: 1507150--1507215 Score: 82
Period size: 13 Copynumber: 5.1 Consensus size: 13
1507140 AGATTCAATC
1507150 AAAACAAA-AAGAA
1 AAAACAAAGAA-AA
1507163 AAAA-AAAGAGAAA
1 AAAACAAAGA-AAA
* *
1507176 AAAGCAAAGAGAA
1 AAAACAAAGAAAA
1507189 AAAACAAAGAAAA
1 AAAACAAAGAAAA
1507202 AAAACAAAGAAAA
1 AAAACAAAGAAAA
1507215 A
1 A
1507216 TTGAAGAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
12 3 0.07
13 37 0.80
14 6 0.13
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAACAAAGAAAA
Found at i:1507407 original size:69 final size:69
Alignment explanation
Indices: 1507289--1507419 Score: 235
Period size: 69 Copynumber: 1.9 Consensus size: 69
1507279 GATTCAAACT
*
1507289 ATGAGATTGATCAAGCACAATCATTTCTAAATCACTGAACCACTTCACTCGAAGATCATAGAGCA
1 ATGAGATTGATCAAGCACAATCATTTCTAAATCACTGAACCACTCCACTCGAAGATCATAGAGCA
1507354 TCAA
66 TCAA
* *
1507358 ATGAGATTGATCAAGCACAATCATTTCTGAATCACTGAATCACTCCACTCGAAGATCATAGA
1 ATGAGATTGATCAAGCACAATCATTTCTAAATCACTGAACCACTCCACTCGAAGATCATAGA
1507420 AAATCAAGAG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
ATGAGATTGATCAAGCACAATCATTTCTAAATCACTGAACCACTCCACTCGAAGATCATAGAGCA
TCAA
Found at i:1508336 original size:32 final size:32
Alignment explanation
Indices: 1508289--1508401 Score: 129
Period size: 32 Copynumber: 3.5 Consensus size: 32
1508279 TGAGGACATC
1508289 TTTGAAGATTCAACATCAAATGTTGGGGCATTT
1 TTTG-AGATTCAACATCAAATGTTGGGGCATTT
* * * *
1508322 TTTTAGATTTAACATAAAATGTTAGGGCATTT
1 TTTGAGATTCAACATCAAATGTTGGGGCATTT
* * *
1508354 TTTGAGATTCAACATCGAATATTGGGGCA-TC
1 TTTGAGATTCAACATCAAATGTTGGGGCATTT
*
1508385 TTTGGGAATTCAACATC
1 TTTGAG-ATTCAACATC
1508402 TTGATGCAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
31 6 0.09
32 58 0.87
33 3 0.04
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (32 bp):
TTTGAGATTCAACATCAAATGTTGGGGCATTT
Found at i:1509241 original size:14 final size:15
Alignment explanation
Indices: 1509208--1509246 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
1509198 TACATTTACG
* *
1509208 TTTTAATTATTATTA
1 TTTTATTTATTATAA
1509223 TTTTATTTATT-TAA
1 TTTTATTTATTATAA
1509237 TTTTATTTAT
1 TTTTATTTAT
1509247 ACACACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTATTATAA
Found at i:1509452 original size:4 final size:4
Alignment explanation
Indices: 1509404--1509563 Score: 52
Period size: 4 Copynumber: 40.8 Consensus size: 4
1509394 TATTATCAGT
* * *
1509404 TTTA TTAA TTTA TATATA TATA TTTA -CTA TTT- TTTA TTT- TTTA TTTA
1 TTTA TTTA TTTA T-T-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
1509451 TTATA TATA TATA TATA TATTA -TT- TTTA CTT- TTTA -TTA -TTA TTTTA
1 TT-TA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA
* * * * * *
1509497 TTAA TTTGT TTTA TTTA TATA TTTA TATA TTTA TATA TTT- TTTCC TTT-
1 TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT-A TTTA
* *
1509545 TTTC TTTA TTTT TTTA TTT
1 TTTA TTTA TTTA TTTA TTT
1509564 TTATTTTACT
Statistics
Matches: 117, Mismatches: 23, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
3 26 0.22
4 73 0.62
5 15 0.13
6 3 0.03
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:1509455 original size:38 final size:39
Alignment explanation
Indices: 1509403--1509492 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
1509393 TTATTATCAG
* * * *
1509403 TTTTATTAATT-TATATATATATATTTACTATTTTTTATT
1 TTTTATTTATTATATATATATATATATATTA-TTTTTACT
1509442 TTTTATTTATTATATATATATATATATATTATTTTTACT
1 TTTTATTTATTATATATATATATATATATTATTTTTACT
1509481 TTTTA-TTATTAT
1 TTTTATTTATTAT
1509493 TTTATTAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
38 7 0.15
39 22 0.48
40 17 0.37
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (39 bp):
TTTTATTTATTATATATATATATATATATTATTTTTACT
Found at i:1509570 original size:23 final size:23
Alignment explanation
Indices: 1509526--1509599 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
1509516 TATTTATATA
* *
1509526 TTTATATATTTTTTCCTT-TTTTC
1 TTTAT-TATTTTATCTTTATTTTC
* *
1509549 TTTATTTTTTTATTTTTATTTTAC
1 TTTATTATTTTATCTTTATTTT-C
* *
1509573 -TTACTATTTTATCTTTACTTTC
1 TTTATTATTTTATCTTTATTTTC
1509595 TTTAT
1 TTTAT
1509600 CTTATCTTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
22 9 0.23
23 29 0.74
24 1 0.03
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTATTTTATCTTTATTTTC
Found at i:1509571 original size:62 final size:59
Alignment explanation
Indices: 1509433--1509584 Score: 157
Period size: 60 Copynumber: 2.5 Consensus size: 59
1509423 ATATTTACTA
*
1509433 TTTTTTATTTTTTATTTATTATATATATATATATATATTATTTTTACTTTTTATTATTAT
1 TTTTTTATTTTTT-TTTATTATATATTTATATATATATTATTTTTACTTTTTATTATTAT
* * * * *
1509493 TTTATTAATTTGTTTTATTTATATATTTATATATTTATATATTTTTTCCTTTTT-TCT-TTAT
1 TTTTTTATTTTTTTTTA-TTATATATTTATATATATAT-TA-TTTTTACTTTTTAT-TATTAT
1509554 TTTTTTATTTTTATTTTACTTACTAT-TTTAT
1 TTTTTTATTTTT-TTTTA-TTA-TATATTTAT
1509585 CTTTACTTTC
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
59 4 0.05
60 28 0.37
61 16 0.21
62 25 0.33
63 3 0.04
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (59 bp):
TTTTTTATTTTTTTTTATTATATATTTATATATATATTATTTTTACTTTTTATTATTAT
Found at i:1513670 original size:24 final size:24
Alignment explanation
Indices: 1513635--1513739 Score: 110
Period size: 23 Copynumber: 4.5 Consensus size: 24
1513625 TCATTTAAAT
* **
1513635 GTAAACGGACACAAATGAACGAAC
1 GTAAACGAACACAAATGAAATAAC
*
1513659 ATAAACGAACAC-AAT-AAATTAAC
1 GTAAACGAACACAAATGAAA-TAAC
*
1513682 GTAAATGAACACAAATGAAATAAC
1 GTAAACGAACACAAATGAAATAAC
*
1513706 GTAAACGAACAC-AAT-AAATAAAA
1 GTAAACGAACACAAATGAAAT-AAC
1513729 GTAAACGAACA
1 GTAAACGAACA
1513740 TAAACCACAA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
22 6 0.09
23 32 0.46
24 28 0.41
25 3 0.04
ACGTcount: A:0.58, C:0.16, G:0.12, T:0.13
Consensus pattern (24 bp):
GTAAACGAACACAAATGAAATAAC
Found at i:1513695 original size:47 final size:47
Alignment explanation
Indices: 1513630--1513739 Score: 148
Period size: 47 Copynumber: 2.3 Consensus size: 47
1513620 TTCGTTCATT
* * *
1513630 TAAATGTAAACGGACACAAATGAACGAACATAAACGAACACAATAAA
1 TAAAAGTAAACGAACACAAATGAAAGAACATAAACGAACACAATAAA
* * * * *
1513677 TTAACGTAAATGAACACAAATGAAATAACGTAAACGAACACAATAAA
1 TAAAAGTAAACGAACACAAATGAAAGAACATAAACGAACACAATAAA
1513724 TAAAAGTAAACGAACA
1 TAAAAGTAAACGAACA
1513740 TAAACCACAA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (47 bp):
TAAAAGTAAACGAACACAAATGAAAGAACATAAACGAACACAATAAA
Found at i:1517021 original size:14 final size:14
Alignment explanation
Indices: 1516986--1517029 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
1516976 TGAAAATAAG
*
1516986 TTTAATATTTTTAT
1 TTTATTATTTTTAT
*
1517000 TTAAATTATTTTTAT
1 TT-TATTATTTTTAT
*
1517015 TTTATTATTTATAT
1 TTTATTATTTTTAT
1517029 T
1 T
1517030 ATTTAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTATTATTTTTAT
Found at i:1517758 original size:20 final size:21
Alignment explanation
Indices: 1517725--1517764 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1517715 TCATCACTTA
* *
1517725 ACTATT-ATTTTTTTACTTTG
1 ACTATTAATCTTTTAACTTTG
1517745 ACTATTAATCTTTTAACTTT
1 ACTATTAATCTTTTAACTTT
1517765 ATTAATCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.25, C:0.12, G:0.03, T:0.60
Consensus pattern (21 bp):
ACTATTAATCTTTTAACTTTG
Found at i:1522968 original size:35 final size:35
Alignment explanation
Indices: 1522918--1522988 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
1522908 AGCCATGTCA
*
1522918 AGTCCCCCAGCTATAGCTTTGGTGGACGAGAGATT
1 AGTCCCCCAGCTATAGCTTTGGAGGACGAGAGATT
* * *
1522953 AGTCCCCCGGTTATAGCTTTGGAGGATGAGAGATT
1 AGTCCCCCAGCTATAGCTTTGGAGGACGAGAGATT
1522988 A
1 A
1522989 TTGATCGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (35 bp):
AGTCCCCCAGCTATAGCTTTGGAGGACGAGAGATT
Found at i:1535888 original size:16 final size:16
Alignment explanation
Indices: 1535848--1535891 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
1535838 ACAAAAAAAT
*
1535848 AAATAAATAAATATGAA
1 AAAT-AATAAAAATGAA
**
1535865 AAGGAATAAAAATGAA
1 AAATAATAAAAATGAA
1535881 AAATAATAAAA
1 AAATAATAAAA
1535892 TAATAATTCA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (16 bp):
AAATAATAAAAATGAA
Found at i:1535921 original size:16 final size:16
Alignment explanation
Indices: 1535902--1535932 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1535892 TAATAATTCA
1535902 AAGGAAAAATAAAAAT
1 AAGGAAAAATAAAAAT
1535918 AAGGAAAAATAAAAA
1 AAGGAAAAATAAAAA
1535933 AAAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (16 bp):
AAGGAAAAATAAAAAT
Found at i:1536107 original size:21 final size:22
Alignment explanation
Indices: 1536082--1536134 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
1536072 AAAGAAAGAT
*
1536082 AAATAAAAATAATTAA-ATAA-A
1 AAATAAAAA-AAATAATATAATA
1536103 AAATAGAAAAAAATAATATAATA
1 AAATA-AAAAAAATAATATAATA
1536126 ATAATAAAA
1 A-AATAAAA
1536135 TATGCGTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 10 0.37
22 8 0.30
23 5 0.19
24 4 0.15
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (22 bp):
AAATAAAAAAAATAATATAATA
Found at i:1537369 original size:37 final size:35
Alignment explanation
Indices: 1537270--1537588 Score: 175
Period size: 35 Copynumber: 8.5 Consensus size: 35
1537260 ATATTTTCGA
* * * *
1537270 AAAATTATATAATATATATTTTTAAAAAATATTTAA
1 AAAATTATATATTATATATTTTCAAAAAATGTTT-T
* *
1537306 AAAACTATATATTATATA-TTTAAAAAAATGTTTTT
1 AAAATTATATATTATATATTTTCAAAAAATG-TTTT
*
1537341 TAAATTATATATTATATAGTTTTC-AAAAATGTTTT
1 AAAATTATATATTATATA-TTTTCAAAAAATGTTTT
* * *
1537376 TAAACTATATATTATATGTTTTCAAAAAAAATGTTTT
1 AAAATTATATATTATATATTTTC--AAAAAATGTTTT
1537413 AAAATTATATATTATATATATATAT-ATATTTAAAATGTTTT
1 AAAATTATATATTATATAT-T-T-TCA-A---AAAATGTTTT
** *
1537454 CAAAAACCATATATTATATATGTTTC-AAAAA-GCTTTCC
1 --AAAATTATATATTATATAT-TTTCAAAAAATG-TTT-T
* * *
1537492 AAACATTATATAATATATATATTTCCAAAAATCATTTT
1 AAA-ATTATATATTATATAT-TTTCAAAAAAT-GTTTT
* *
1537530 CAAAACTATATATATATTATATGTATTTCAAAAACAT-TTGT
1 --AAA--AT-TATATATTATATAT-TTTCAAAAA-ATGTTTT
*
1537571 -AAATTATATAATATATAT
1 AAAATTATATATTATATAT
1537589 CAGACGAAAA
Statistics
Matches: 226, Mismatches: 30, Indels: 55
0.73 0.10 0.18
Matches are distributed among these distances:
34 5 0.02
35 58 0.26
36 32 0.14
37 55 0.24
38 9 0.04
39 4 0.02
40 5 0.02
41 16 0.07
42 22 0.10
43 20 0.09
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (35 bp):
AAAATTATATATTATATATTTTCAAAAAATGTTTT
Found at i:1537551 original size:40 final size:39
Alignment explanation
Indices: 1537425--1537568 Score: 108
Period size: 37 Copynumber: 3.8 Consensus size: 39
1537415 AATTATATAT
** * *
1537425 TATATATATA-TATATATTT--AAAATGTTTTCAAAAAC
1 TATATATATATTATATATTTCAAAAACATTTCCAAACAC
* * *
1537461 CATATAT-TA-TATATGTTTCAAAAAGC-TTTCCAAACAT
1 TATATATATATTATATATTTCAAAAA-CATTTCCAAACAC
*
1537498 TATATA-ATA-TATATATTTCCAAAAATCATTTTCAAA-AC
1 TATATATATATTATATATTT-CAAAAA-CATTTCCAAACAC
1537536 TATATATATATTATATGTATTTCAAAAACATTT
1 TATATATATATTATA--TATTTCAAAAACATTT
1537569 GTAAATTATA
Statistics
Matches: 87, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
35 10 0.11
36 6 0.07
37 27 0.31
38 14 0.16
39 10 0.11
40 9 0.10
41 6 0.07
42 5 0.06
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.42
Consensus pattern (39 bp):
TATATATATATTATATATTTCAAAAACATTTCCAAACAC
Found at i:1537585 original size:40 final size:41
Alignment explanation
Indices: 1537509--1537586 Score: 90
Period size: 40 Copynumber: 1.9 Consensus size: 41
1537499 ATATAATATA
1537509 TATATTTCCAAAAATCATTTTCAAAACTATATATATATTATA
1 TATATTTCCAAAAATCATTTT-AAAACTATATATATATTATA
* *
1537551 TGTATTT-CAAAAA-CATTTGT-AAATTATATAATATAT
1 TATATTTCCAAAAATCATTT-TAAAACTATAT-ATATAT
1537587 ATCAGACGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
39 8 0.25
40 11 0.34
41 7 0.22
42 6 0.19
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.44
Consensus pattern (41 bp):
TATATTTCCAAAAATCATTTTAAAACTATATATATATTATA
Found at i:1537588 original size:42 final size:42
Alignment explanation
Indices: 1537462--1537568 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
1537452 TTCAAAAACC
* * *
1537462 ATATATTATATATGTTT-CAAAAAGC--TTTCCAAAC-AT-T
1 ATATATTATATATATTTCCAAAAATCATTTTCAAAACTATAT
*
1537499 ATATAATATATATATTTCCAAAAATCATTTTCAAAACTATAT
1 ATATATTATATATATTTCCAAAAATCATTTTCAAAACTATAT
*
1537541 ATATATTATATGTATTT-CAAAAA-CATTT
1 ATATATTATATATATTTCCAAAAATCATTT
1537569 GTAAATTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
37 15 0.25
38 7 0.12
40 13 0.22
41 8 0.14
42 16 0.27
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (42 bp):
ATATATTATATATATTTCCAAAAATCATTTTCAAAACTATAT
Found at i:1538213 original size:84 final size:84
Alignment explanation
Indices: 1538097--1539167 Score: 1266
Period size: 84 Copynumber: 12.8 Consensus size: 84
1538087 CGACAATTTT
* * * * * *** * * *
1538097 GTTGACAGATAGCCCTTCTTGCCTTGAGCTATGCTGTAAATGATACACCTTTGAGCTGAGTGTAA
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
*
1538162 TCGAACTCGAAGGTATTTG
66 TCGAACTCGAAGGTCTTTG
* * * * * **
1538181 GTTGGCAGATAGCCCTTCTCGACTTAATCTATGTTATAAATGATGTGCCTTGGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
*
1538246 TTGAACTCGAAGGTCTTTG
66 TCGAACTCGAAGGTCTTTG
* * * * * *
1538265 GTTGTCAGATAACCCTTATAGCCTTGAGTTATGCTGCAAATGATATGCCTTGAAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* *
1538330 TTGAACTCGAAGGTCTTTT
66 TCGAACTCGAAGGTCTTTG
* * * * * *
1538349 GATAGTAGATAGCCCTTCTAGCCTTGAGATATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1538414 TCGAACTCGAAGGTCTTTG
66 TCGAACTCGAAGGTCTTTG
* * * * *
1538433 GTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGCCTTGGAGCTGAACGTAA
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
*
1538498 TCAAACTCGAAGGTCTTTTG
66 TCGAACTCGAAGGTC-TTTG
* * * * * *
1538518 G-TGGCAGATAGCCTTTCTAGCCTTGAGCTATGCTACAAATAATGTTCCTTGGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* *
1538582 TTGAACTTGAAGGTCTTATG
66 TCGAACTCGAAGGTCTT-TG
* * *
1538602 G-TGGCAGATAACCCTTCTAGCCTTGAGCTATGTTGCAAATGGTGTGCCTTGGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
*
1538666 TCGAACTCAAAGGTCTTTG
66 TCGAACTCGAAGGTCTTTG
* * * *
1538685 GTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGTCTTGGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1538750 TCGAACTCGAAGGTCTTTG
66 TCGAACTCGAAGGTCTTTG
* * * ** ** * *
1538769 GTTGGCATATAGCCCTTCTCGAATTAAGCTATATTGCAAATAATGTGCCTTTGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* * *
1538834 TCGAATTCAAAGGTCTTTT
66 TCGAACTCGAAGGTCTTTG
* * * *
1538853 GCTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCATAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1538918 TCGAACTCGAAGGTCTTTG
66 TCGAACTCGAAGGTCTTTG
* * * * * *
1538937 GTTGGCAGATAGCCCTTTTCGACTTAAGCTATGCTACAAATGATGTGCCTTTGAGCTGAGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* *
1539002 TCGAACTCAAAGGTCTTTT
66 TCGAACTCGAAGGTCTTTG
* * * * *
1539021 GTTGGCAGATAACCCTTCTTGCCTTGAGCTATGATGCAAATGATGTGCCTTTGAGCTGGGCGTAG
1 GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* * *
1539086 TTGAACTCAAAGGTCTTTT
66 TCGAACTCGAAGGTCTTTG
* * * *
1539105 GTTGGTAGATAACCATTCTAGCCTTGA-CTTATGCTGCAAATGATGTACCTTGGAGCTGAGCGT
1 GTTGGCAGATAACCCTTCTAGCCTTAAGC-TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGT
1539168 TGTAACACCC
Statistics
Matches: 846, Mismatches: 137, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
83 6 0.01
84 835 0.99
85 5 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.32
Consensus pattern (84 bp):
GTTGGCAGATAACCCTTCTAGCCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
TCGAACTCGAAGGTCTTTG
Found at i:1539852 original size:23 final size:23
Alignment explanation
Indices: 1539826--1539870 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1539816 CACCACAGCT
*
1539826 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
1539849 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
1539871 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:1540091 original size:149 final size:149
Alignment explanation
Indices: 1539838--1540152 Score: 553
Period size: 149 Copynumber: 2.1 Consensus size: 149
1539828 TATAATTGCA
1539838 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
**
1539902 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTT
*
1539967 CCACAGAATATATATATATC
130 CCAAAGAATATATATATATC
*
1539987 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
*
1540052 TCCTTAAGAATCATATACATATGCTAGGGATCATA-TATGTGTCTCACCAGACTTCACACATGTT
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGTATGTGTCTCACAAGACTTCACACATGTT
1540116 CCAAAGAATATATATATATC
130 CCAAAGAATATATATATATC
1540136 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
1540153 CCCTCGACTC
Statistics
Matches: 159, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
148 1 0.01
149 157 0.99
150 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
CAAAGAATATATATATATC
Found at i:1541070 original size:18 final size:18
Alignment explanation
Indices: 1541049--1541083 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1541039 TCCCATCTAG
1541049 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
1541067 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
1541084 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:1541673 original size:64 final size:66
Alignment explanation
Indices: 1541575--1541699 Score: 202
Period size: 64 Copynumber: 1.9 Consensus size: 66
1541565 TAATGAAGGT
*
1541575 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTTAATGGG
1 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAATGGG
1541639 G
66 G
*
1541640 ATGCATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAA
1 ATGCATCGATGCACTACAC-CATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAA
1541700 ATTCATGCAT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
63 1 0.02
64 30 0.54
65 25 0.45
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (66 bp):
ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAATGGG
G
Found at i:1541708 original size:64 final size:64
Alignment explanation
Indices: 1541575--1541717 Score: 193
Period size: 64 Copynumber: 2.2 Consensus size: 64
1541565 TAATGAAGGT
* *
1541575 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGC
*
1541640 ATGCATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAT-
1 ATGCATCGATGCACTACAC-CATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATG
*
1541702 TC
63 GC
1541704 ATGCATCGATGCAC
1 ATGCATCGATGCAC
1541718 CTTAAACAAA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
63 1 0.01
64 44 0.62
65 23 0.32
66 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (64 bp):
ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGC
Found at i:1545062 original size:23 final size:23
Alignment explanation
Indices: 1545036--1545080 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1545026 CACCACAGCT
*
1545036 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
1545059 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
1545081 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:1545322 original size:151 final size:149
Alignment explanation
Indices: 1545048--1545364 Score: 530
Period size: 151 Copynumber: 2.1 Consensus size: 149
1545038 TATAATTGCA
*
1545048 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCGCATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
**
1545112 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTT
*
1545177 CCACAGAATATATATATATATC
130 CCAAAG-A-ATATATATATATC
*
1545199 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
*
1545264 TCCTTAAGAATCATATACATATGCTAGGGATCATA-TATGTGTCTCACCAGACTTCACACATGTT
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGTATGTGTCTCACAAGACTTCACACATGTT
1545328 CCAAAGAATATATATATATC
130 CCAAAGAATATATATATATC
1545348 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
1545365 CCCTCGACTC
Statistics
Matches: 158, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
149 30 0.19
150 2 0.01
151 125 0.79
152 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
CAAAGAATATATATATATC
Found at i:1546269 original size:18 final size:18
Alignment explanation
Indices: 1546248--1546282 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1546238 TCCCATCTAG
1546248 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
1546266 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
1546283 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:1546870 original size:64 final size:63
Alignment explanation
Indices: 1546772--1546932 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 63
1546762 TAATGAAGGT
* *
1546772 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTT-AATGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAT--
*
1546835 GG
62 GC
*
1546837 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATTC
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATGC
* *
1546901 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACT-CCTATGCATCGATGCA
1546933 GCTTAAACAA
Statistics
Matches: 86, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
63 1 0.01
64 58 0.67
65 24 0.28
66 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATGC
Found at i:1550278 original size:23 final size:23
Alignment explanation
Indices: 1550252--1550296 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1550242 CACCACAGCT
*
1550252 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
1550275 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
1550297 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:1550517 original size:149 final size:145
Alignment explanation
Indices: 1550264--1550574 Score: 500
Period size: 149 Copynumber: 2.1 Consensus size: 145
1550254 TATAATTGCA
*
1550264 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCGCATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
**
1550328 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTA--TGTCTCACAAGACTTCACACATGTT
*
1550393 CCACAGAATATATATATATC
128 CCAAAG-A-ATATATATATC
*
1550413 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
*
1550478 TCCTTAAGAATCATATACATATGCTAGGGATCATA-TATGTCTCACCAGACTTCACACATGTTCC
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGTATGTCTCACAAGACTTCACACATGTTCC
1550542 AAAGAATATATATATC
130 AAAGAATATATATATC
1550558 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
1550575 CCCTCGACTC
Statistics
Matches: 154, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
145 28 0.18
146 1 0.01
147 27 0.18
148 1 0.01
149 96 0.62
150 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (145 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTCTCACAAGACTTCACACATGTTCCA
AAGAATATATATATC
Found at i:1551484 original size:18 final size:18
Alignment explanation
Indices: 1551463--1551497 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1551453 TCCCATCTAG
1551463 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
1551481 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
1551498 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:1552087 original size:64 final size:63
Alignment explanation
Indices: 1551984--1552149 Score: 208
Period size: 64 Copynumber: 2.6 Consensus size: 63
1551974 TCTTTTAATG
* * *
1551984 AAGGTATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTTA
1 AAGGCATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTA
*
1552048 ATAGGGATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTA
1 A-AGGCATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTA
** * *
1552113 AATTCATGCATCGATGCACTGCATGTGCATCGATGCA
1 AAGGCATGCATCGATGCACT-CCTATGCATCGATGCA
1552150 CCTTAAACAA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
63 1 0.01
64 60 0.67
65 29 0.32
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (63 bp):
AAGGCATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTA
Found at i:1553068 original size:84 final size:84
Alignment explanation
Indices: 1552918--1553112 Score: 275
Period size: 84 Copynumber: 2.3 Consensus size: 84
1552908 GGATGTTACA
* * *
1552918 AGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTTCAA
1 AGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGATTCAA
* *
1552983 ATGATGTGCCTTTGAGTTG
66 ATGATGTGCCTTGGAGCTG
* * *** *
1553002 AGTGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTTTCCTTGAGTTAT-ATTGCA
1 AGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGATT-CA
1553066 AATGATGTGCCTTGGAGCTG
65 AATGATGTGCCTTGGAGCTG
1553086 AGCGTAGTCGAACTCGAAGGTCTTTTG
1 AGCGTAGTCGAACTCGAAGGTCTTTTG
1553113 ACAAGTCAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
83 2 0.02
84 95 0.98
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (84 bp):
AGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGATTCAA
ATGATGTGCCTTGGAGCTG
Found at i:1554095 original size:55 final size:55
Alignment explanation
Indices: 1554002--1554419 Score: 467
Period size: 55 Copynumber: 7.5 Consensus size: 55
1553992 TGTATCTTCC
* * * *
1554002 CCCTATTCATTCAGAGAGTATAGGACTCGAATAATCTTCAAAAAACGGGTCCGCT
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAACGGGTCCGCT
* * * * * *
1554057 CCCTCTTCCTTCAGAGAGTATAGGACTTGAACAATCTTCAACAAACGGGTCCACT
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAACGGGTCCGCT
* * * **
1554112 CCCTATTCGTTCAGGGACTATAGAACTCGAACAATCTTCATAAAAATGGGTCAACT
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCA-AAAAACGGGTCCGCT
* * * * ** * *
1554168 CCCTATTCATTTAGGGAGTATAGAACTCAAACAATCTTCAGCAAAATAGGTCCACC
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCA-AAAAACGGGTCCGCT
* * *
1554224 CCCTATTCGTTCAGGGAGTATAAAACTCGAACAATCTTCATAAAAACGGGTCTGCT
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCA-AAAAACGGGTCCGCT
* * ** *
1554280 CCCTATTCCTTTAGGGAGTATAGAACTCAAACAATCTTCAACTAACGGGTCTGCT
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAACGGGTCCGCT
* * ** *
1554335 CCCTATTCGTTCAGGGAGTATAGAACTCAAACAATCTTCAACTAACGTGTCCGCT
1 CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAACGGGTCCGCT
* *
1554390 CCCTATTCCTTCAGAGAGTATAGGACTCGA
1 CCCTATTCCTTCAGGGAGTATAGAACTCGA
1554420 TCTTCATAAA
Statistics
Matches: 313, Mismatches: 49, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
55 173 0.55
56 140 0.45
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (55 bp):
CCCTATTCCTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAACGGGTCCGCT
Found at i:1554252 original size:112 final size:111
Alignment explanation
Indices: 1554000--1554417 Score: 516
Period size: 112 Copynumber: 3.8 Consensus size: 111
1553990 AATGTATCTT
* * * * * *
1554000 CCCCCTATTCATTCAGAGAGTATAGGACTCGAATAATCTTCA-AAAAACGGGTCCGCTCCCTCTT
1 CCCCCTATTCGTTCAGGGAGTATAGAACTCGAACAATCTTCATAAAAACGGGTCAGCTCCCTATT
* * * **
1554064 CCTTCAGAGAGTATAGGACTTGAACAATCTTCAACAAACGGGTCCA
66 CCTTTAGGGAGTATAGAACTCAAACAATCTTCAACAAACGGGTCCA
* * * *
1554110 CTCCCTATTCGTTCAGGGACTATAGAACTCGAACAATCTTCATAAAAATGGGTCAACTCCCTATT
1 CCCCCTATTCGTTCAGGGAGTATAGAACTCGAACAATCTTCATAAAAACGGGTCAGCTCCCTATT
* * **
1554175 CATTTAGGGAGTATAGAACTCAAACAATCTTCAGCAAAATAGGTCCA
66 CCTTTAGGGAGTATAGAACTCAAACAATCTTCAAC-AAACGGGTCCA
* *
1554222 CCCCCTATTCGTTCAGGGAGTATAAAACTCGAACAATCTTCATAAAAACGGGTCTGCTCCCTATT
1 CCCCCTATTCGTTCAGGGAGTATAGAACTCGAACAATCTTCATAAAAACGGGTCAGCTCCCTATT
* **
1554287 CCTTTAGGGAGTATAGAACTCAAACAATCTTCAACTAACGGGTCTG
66 CCTTTAGGGAGTATAGAACTCAAACAATCTTCAACAAACGGGTCCA
* * ** * *
1554333 CTCCCTATTCGTTCAGGGAGTATAGAACTCAAACAATCTTCA-ACTAACGTGTCCGCTCCCTATT
1 CCCCCTATTCGTTCAGGGAGTATAGAACTCGAACAATCTTCATAAAAACGGGTCAGCTCCCTATT
* * *
1554397 CCTTCAGAGAGTATAGGACTC
66 CCTTTAGGGAGTATAGAACTC
1554418 GATCTTCATA
Statistics
Matches: 264, Mismatches: 42, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
110 72 0.27
111 91 0.34
112 101 0.38
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (111 bp):
CCCCCTATTCGTTCAGGGAGTATAGAACTCGAACAATCTTCATAAAAACGGGTCAGCTCCCTATT
CCTTTAGGGAGTATAGAACTCAAACAATCTTCAACAAACGGGTCCA
Found at i:1554491 original size:37 final size:37
Alignment explanation
Indices: 1554431--1554545 Score: 133
Period size: 37 Copynumber: 3.1 Consensus size: 37
1554421 CTTCATAAAA
* *
1554431 TGAATATGTTTCACAACTATTCCGTGAAGGCTTATAGA-
1 TGAAT-TGCTTCACTACTATTCCGTGAAGGCTTA-AGAT
* *
1554469 TGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGAT
1 TGAATTGCTTCACTACTATTCCGTGAAGGCTTAAGAT
* * * *
1554506 TGAATTGCTTCACTGCTATTTCATGAAGGCTTAAAAT
1 TGAATTGCTTCACTACTATTCCGTGAAGGCTTAAGAT
1554543 TGA
1 TGA
1554546 CTTGTTTCGA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
36 3 0.05
37 59 0.89
38 4 0.06
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (37 bp):
TGAATTGCTTCACTACTATTCCGTGAAGGCTTAAGAT
Found at i:1555887 original size:20 final size:20
Alignment explanation
Indices: 1555848--1555910 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
1555838 TTCATTTTAC
1555848 TCTTTCTTCTTTTTTCC-TTT
1 TCTTT-TTCTTTTTTCCTTTT
1555868 TCATTTTTCATTTTTT-CTTTT
1 TC-TTTTTC-TTTTTTCCTTTT
*
1555889 TCTTTTTC-TTTTTCATTTT
1 TCTTTTTCTTTTTTCCTTTT
1555908 TCT
1 TCT
1555911 CATTTTTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
18 5 0.13
19 7 0.18
20 12 0.32
21 14 0.37
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (20 bp):
TCTTTTTCTTTTTTCCTTTT
Found at i:1555915 original size:9 final size:8
Alignment explanation
Indices: 1555865--1555925 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 8
1555855 TCTTTTTTCC
1555865 TTTTCA-T
1 TTTTCATT
1555872 TTTTCATT
1 TTTTCATT
1555880 TTTTC--T
1 TTTTCATT
1555886 TTTTC--T
1 TTTTCATT
1555892 TTTTC--T
1 TTTTCATT
1555898 TTTTCATT
1 TTTTCATT
1555906 TTTCTCATTT
1 TTT-TCA-TT
1555916 TTTTCATT
1 TTTTCATT
1555924 TT
1 TT
1555926 ATTTTTTTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
6 18 0.37
7 6 0.12
8 14 0.29
9 6 0.12
10 5 0.10
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTCATT
Found at i:1555925 original size:7 final size:6
Alignment explanation
Indices: 1555848--1555910 Score: 63
Period size: 6 Copynumber: 9.5 Consensus size: 6
1555838 TTCATTTTAC
*
1555848 TCTTTCT TCTTTTT TCCTTT TCATTTT TCATTTTT TCTTTT TCTTTT TCTTTT
1 TCTTT-T TC-TTTT TCTTTT TC-TTTT TC--TTTT TCTTTT TCTTTT TCTTTT
1555901 TCATTTT TCT
1 TC-TTTT TCT
1555911 CATTTTTTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
6 24 0.49
7 16 0.33
8 9 0.18
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (6 bp):
TCTTTT
Found at i:1555940 original size:14 final size:14
Alignment explanation
Indices: 1555871--1555934 Score: 53
Period size: 14 Copynumber: 4.4 Consensus size: 14
1555861 TTCCTTTTCA
1555871 TTTTTCATTTT-TT
1 TTTTTCATTTTATT
*
1555884 CTTTTTC-TTTT-TC
1 -TTTTTCATTTTATT
1555897 TTTTTCATTTTTCTCATT
1 TTTTTCA--TTT-T-ATT
1555915 TTTTTCATTTTATT
1 TTTTTCATTTTATT
1555929 TTTTTC
1 TTTTTC
1555935 TCTTTAAGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
12 6 0.14
13 5 0.12
14 15 0.36
15 4 0.10
16 4 0.10
18 8 0.19
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTCATTTTATT
Found at i:1564225 original size:33 final size:34
Alignment explanation
Indices: 1564163--1564226 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 34
1564153 CTAGCCCATG
* **
1564163 TCTTTTTCTCTTTTTCTCTTTCTCGAGTTCTTGT
1 TCTTTTTCTCTTCTTCTCTGCCTCGAGTTCTTGT
*
1564197 TCTTTTT-TCTTCTTCTCTGCCTCTAGTTCT
1 TCTTTTTCTCTTCTTCTCTGCCTCGAGTTCT
1564227 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 19 0.73
34 7 0.27
ACGTcount: A:0.03, C:0.27, G:0.08, T:0.62
Consensus pattern (34 bp):
TCTTTTTCTCTTCTTCTCTGCCTCGAGTTCTTGT
Found at i:1568801 original size:31 final size:31
Alignment explanation
Indices: 1568752--1568815 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
1568742 GTTTATGGAC
* * * *
1568752 TGCTAGTGTTGCTTTCGAAACTCACTGCTTG
1 TGCTAGTATTCCTGTCGAAACTCACTACTTG
*
1568783 TGCTAGTATTCCTGTCGAAATTCACTACTTG
1 TGCTAGTATTCCTGTCGAAACTCACTACTTG
1568814 TG
1 TG
1568816 TTTAGAATAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (31 bp):
TGCTAGTATTCCTGTCGAAACTCACTACTTG
Found at i:1570550 original size:95 final size:95
Alignment explanation
Indices: 1570350--1570600 Score: 274
Period size: 95 Copynumber: 2.6 Consensus size: 95
1570340 CTAGCTGAAT
** ** * * *
1570350 CATAAAGTTGGGGCGTTTAACCAATTTTTCTAGAGGGACAACTTAATATCATTGTATAG-ATAAT
1 CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAA-A-C-TT-TATTGTATATT
* *
1570414 ATAA-TCACC-TTATCAGGCTAGCTTAATATTATC
62 ATAATTC-CCTTTATCAAGCTAGCTGAATATTATC
* * *
1570447 TATAAAGCCGGGGCGTTTAACCAATTGCTCTATAGGGATAACTCAAACTTTATTGTATATTATAA
1 CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAACTTTATTGTATATTATAA
* *
1570512 TTCCCTTTATCAAGTTAGCTGAATCTTATC
66 TTCCCTTTATCAAGCTAGCTGAATATTATC
* ** *
1570542 CATAAAGCCGGGGGGTTTAACCAATTGCTCTAGAGGGACAGTTCAAGCTTTATTGTATA
1 CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAACTTTATTGTATA
1570601 CATAATAATA
Statistics
Matches: 130, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
93 4 0.03
94 12 0.09
95 75 0.58
96 1 0.01
97 38 0.29
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (95 bp):
CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAACTTTATTGTATATTATAA
TTCCCTTTATCAAGCTAGCTGAATATTATC
Found at i:1573940 original size:16 final size:17
Alignment explanation
Indices: 1573914--1573950 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
1573904 ATTAAGTAAA
1573914 AAAACATG-AAAATGAAT
1 AAAACATGAAAAAT-AAT
1573931 AAAA-ATGAAAAATAAT
1 AAAACATGAAAAATAAT
1573947 AAAA
1 AAAA
1573951 TAATAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (17 bp):
AAAACATGAAAAATAAT
Found at i:1573986 original size:22 final size:23
Alignment explanation
Indices: 1573937--1574003 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 23
1573927 GAATAAAAAT
*
1573937 GAAAAATAATAAAATAATAATTCAAAG
1 GAAAAATAAT-AAATAA-AAAT--AAG
*
1573964 GGAAAATAA-AAATAAAAATAAG
1 GAAAAATAATAAATAAAAATAAG
1573986 GAAAAATAATAAATAAAA
1 GAAAAATAATAAATAAAA
1574004 TGCTAAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 11 0.31
23 8 0.22
24 3 0.08
25 6 0.17
27 8 0.22
ACGTcount: A:0.72, C:0.01, G:0.09, T:0.18
Consensus pattern (23 bp):
GAAAAATAATAAATAAAAATAAG
Found at i:1574153 original size:14 final size:14
Alignment explanation
Indices: 1574134--1574189 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
1574124 CAAAAGAATG
1574134 ATAAATAAAAATAA
1 ATAAATAAAAATAA
1574148 ATAAATAAAAATAGA
1 ATAAATAAAAATA-A
*
1574163 A-AAA-AACAAT-A
1 ATAAATAAAAATAA
*
1574174 ATATAATAACAATAA
1 ATA-AATAAAAATAA
1574189 A
1 A
1574190 ATATGCGTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
11 2 0.06
12 1 0.03
13 7 0.19
14 22 0.61
15 4 0.11
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (14 bp):
ATAAATAAAAATAA
Found at i:1575286 original size:10 final size:10
Alignment explanation
Indices: 1575253--1575288 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
1575243 ACAAAATGGA
1575253 AATAAATAAAT
1 AATAAAT-AAT
*
1575264 AAGAAATAAT
1 AATAAATAAT
1575274 AATAAATAAT
1 AATAAATAAT
1575284 AATAA
1 AATAA
1575289 TATATTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 17 0.74
11 6 0.26
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (10 bp):
AATAAATAAT
Found at i:1575327 original size:38 final size:38
Alignment explanation
Indices: 1575285--1575380 Score: 113
Period size: 38 Copynumber: 2.5 Consensus size: 38
1575275 ATAAATAATA
* * *
1575285 ATAATATAT-TATATACAAAAATATTTTCAAAAAATTAT
1 ATAATATATCT-TATAAAAAAATATTTTAAAAAAACTAT
*
1575323 ATAATATATCTTTTAAAAAAATATTTTAAAAAAACTAT
1 ATAATATATCTTATAAAAAAATATTTTAAAAAAACTAT
* * *
1575361 ATATTATATATTTTAAAAAA
1 ATAATATATCTTATAAAAAA
1575381 TCTTTTTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
38 50 0.98
39 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (38 bp):
ATAATATATCTTATAAAAAAATATTTTAAAAAAACTAT
Found at i:1575404 original size:35 final size:34
Alignment explanation
Indices: 1575316--1575518 Score: 145
Period size: 35 Copynumber: 5.5 Consensus size: 34
1575306 TATTTTCAAA
* * **
1575316 AAATTATATAATATATCTTTTAAAAAAATATTTTAAAA
1 AAATTATATATTATATATTTT-AAAAAAT-TTTT--TT
*
1575354 AAACTATATATTATATATTTTAAAAAATCTTTTTT
1 AAATTATATATTATATATTTTAAAAAAT-TTTTTT
* *
1575389 AAATTATATATTATATAGTTTTCAAAAATGTTTTT
1 AAATTATATATTATATA-TTTTAAAAAATTTTTTT
* * *
1575424 AAACTATATTTTATATGTTTTCAAAAAAAATGTTTTTTT
1 AAATTATATATTATATATTTT---AAAAAA--TTTTTTT
* * * *
1575463 AAAATTATATATTATATAAATTTCAAAAATGTTTTA
1 -AAATTATATATTATAT-ATTTTAAAAAATTTTTTT
1575499 AAATTATATTATATATATAT
1 AAATTATA-TAT-TATATAT
1575519 ATATATATTT
Statistics
Matches: 133, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
34 4 0.03
35 43 0.32
36 19 0.14
37 21 0.16
38 23 0.17
39 6 0.05
40 14 0.11
41 3 0.02
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (34 bp):
AAATTATATATTATATATTTTAAAAAATTTTTTT
Found at i:1575439 original size:75 final size:80
Alignment explanation
Indices: 1575358--1575631 Score: 204
Period size: 75 Copynumber: 3.6 Consensus size: 80
1575348 TTAAAAAAAC
**
1575358 TATATAT-TATATATTTTAAAAAAT-CTTTTTT-AAATTATATATTATATAGTTTTCAAAAATGT
1 TATATATATATATATTTTAAAAAATGCTTTTTTAAAATTATATATTATATAAATTTCAAAAATGT
*
1575420 TTTTAAACTATATT-
66 TTTAAAACTATATTA
* *** *
1575434 T-TATATGT-T-T-TCAAAAAAAATGTTTTTTTAAAATTATATATTATATAAATTTCAAAAATGT
1 TATATATATATATATTTTAAAAAATGCTTTTTTAAAATTATATATTATATAAATTTCAAAAATGT
*
1575495 TTTAAAATTATATTA
66 TTTAAAACTATATTA
* ** ** ** *
1575510 TATATATATATATATATTT--AAAAT-ATTTTCAAAAACCATATATTATATATGTTTCAAAAATC
1 TATATATATATATAT-TTTAAAAAATGCTTTTTTAAAATTATATATTATATAAATTTCAAAAATG
**
1575572 TTTCCAAAC---ATTA
65 TTTTAAAACTATATTA
** * * *
1575585 TATA-ATATATATATTTCCAAAAAT-CATTTTCAAAACTATATA-TATAT
1 TATATATATATATATTTTAAAAAATGCTTTTTTAAAATTATATATTATAT
1575632 TATATGTATT
Statistics
Matches: 158, Mismatches: 29, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
73 10 0.06
74 22 0.14
75 73 0.46
76 3 0.02
77 6 0.04
78 37 0.23
79 6 0.04
80 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (80 bp):
TATATATATATATATTTTAAAAAATGCTTTTTTAAAATTATATATTATATAAATTTCAAAAATGT
TTTAAAACTATATTA
Found at i:1575673 original size:42 final size:42
Alignment explanation
Indices: 1575468--1575653 Score: 143
Period size: 37 Copynumber: 4.7 Consensus size: 42
1575458 TTTTTAAAAT
* * *
1575468 TATATATTATATAAATTT-CAAAAAT-GTTTT-AAAATTATA
1 TATATATTATATATATTTCCAAAAATCATTTTCAAAACTATA
* *
1575507 TTATATATATATATATATATT--TAAAAT-ATTTTCAAAA--A-C
1 -TATATAT-TATATATAT-TTCCAAAAATCATTTTCAAAACTATA
* * *
1575546 CATATATTATATATGTTT-CAAAAATC--TTTCCAAAC-AT-
1 TATATATTATATATATTTCCAAAAATCATTTTCAAAACTATA
*
1575583 TATATAATATATATATTTCCAAAAATCATTTTCAAAACTATA
1 TATATATTATATATATTTCCAAAAATCATTTTCAAAACTATA
*
1575625 TATATATTATATGTATTT-CAAAAA-CATTT
1 TATATATTATATATATTTCCAAAAATCATTT
1575654 GTAAATTATA
Statistics
Matches: 120, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
36 9 0.08
37 29 0.24
38 14 0.12
40 21 0.17
41 25 0.21
42 22 0.18
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.44
Consensus pattern (42 bp):
TATATATTATATATATTTCCAAAAATCATTTTCAAAACTATA
Found at i:1580560 original size:14 final size:14
Alignment explanation
Indices: 1580541--1580596 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
1580531 CGTTCGTGAA
1580541 CGTTCGATTATGTT
1 CGTTCGATTATGTT
*
1580555 CGTTCGGTTATG-T
1 CGTTCGATTATGTT
*
1580568 --TT-GTTTATGTT
1 CGTTCGATTATGTT
1580579 CGTTCGATTATGTT
1 CGTTCGATTATGTT
1580593 CGTT
1 CGTT
1580597 TATGTTCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.09
13 3 0.09
14 23 0.66
ACGTcount: A:0.11, C:0.12, G:0.23, T:0.54
Consensus pattern (14 bp):
CGTTCGATTATGTT
Found at i:1580575 original size:24 final size:24
Alignment explanation
Indices: 1580548--1580617 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
1580538 GAACGTTCGA
*
1580548 TTATGTTCGTTCGGTTATGTTTGT
1 TTATGTTCGTTCGATTATGTTTGT
*
1580572 TTATGTTCGTTCGATTATGTTCGT
1 TTATGTTCGTTCGATTATGTTTGT
*
1580596 TTATGTTCATTC-ATTTATGTTT
1 TTATGTTCGTTCGA-TTATGTTT
1580618 AACTCAATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.13, C:0.10, G:0.19, T:0.59
Consensus pattern (24 bp):
TTATGTTCGTTCGATTATGTTTGT
Found at i:1581356 original size:10 final size:10
Alignment explanation
Indices: 1581341--1581415 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
1581331 GGGTCTCCAA
1581341 CGTTTATGTT
1 CGTTTATGTT
1581351 CGTTTATGTT
1 CGTTTATGTT
1581361 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
1581372 ATGTTCGTGTT
1 -CGTTTATGTT
1581383 CGTTTATGTT
1 CGTTTATGTT
1581393 CG----TGTT
1 CGTTTATGTT
1581399 CGTTTATGTT
1 CGTTTATGTT
1581409 CGTTTAT
1 CGTTTAT
1581416 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:1581372 original size:16 final size:16
Alignment explanation
Indices: 1581347--1581411 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
1581337 CCAACGTTTA
1581347 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
1581363 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
1581379 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
1581395 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
1581411 T
1 T
1581412 TTATTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:1581739 original size:36 final size:36
Alignment explanation
Indices: 1581692--1581762 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
1581682 TAAGATATTA
*
1581692 AATTTTGATTTGATTCAAATAT-GAAAGGGTTTTTTG
1 AATTTTGATTTGACTCAAATATAG-AAGGGTTTTTTG
*
1581728 AATTTTGATTTGACTCGAATATAGAAGGGTTTTTT
1 AATTTTGATTTGACTCAAATATAGAAGGGTTTTTT
1581763 TTAGCAAGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 31 0.97
37 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (36 bp):
AATTTTGATTTGACTCAAATATAGAAGGGTTTTTTG
Found at i:1581863 original size:49 final size:49
Alignment explanation
Indices: 1581807--1581900 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 49
1581797 TACCTGACAT
* * *
1581807 ATTGATTTCAATATTCAATTTAATGATCTTTTAACCAGTTTAAACTGAA
1 ATTGATTTCAATATTCAATCTAATAATCTTTTAACCAATTTAAACTGAA
***
1581856 ATTGATTTTTGTATTCAATCTAATAATCTTTTAACCAATTTAAAC
1 ATTGATTTCAATATTCAATCTAATAATCTTTTAACCAATTTAAAC
1581901 AAAGAAATCA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (49 bp):
ATTGATTTCAATATTCAATCTAATAATCTTTTAACCAATTTAAACTGAA
Found at i:1587038 original size:2 final size:2
Alignment explanation
Indices: 1587031--1587074 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
1587021 CTTTTTCAAC
1587031 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1587073 AT
1 AT
1587075 GTAATTCTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1588836 original size:5 final size:6
Alignment explanation
Indices: 1588811--1588865 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
1588801 AATAAGAGAT
1588811 AATATA AATATA AATATA AATA-A AATA-A AATA-A AATACT- AATAATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATA-TA AAT-ATA
1588857 ATATATA AA
1 A-ATATA AA
1588866 AAATTATATG
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
5 15 0.34
6 21 0.48
7 6 0.14
8 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (6 bp):
AATATA
Found at i:1588838 original size:21 final size:19
Alignment explanation
Indices: 1588809--1588866 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 19
1588799 GAAATAAGAG
*
1588809 ATAATATAAATATAAATATAA
1 ATAAAATAAATATAAA-AT-A
1588830 ATAAAATAAA-ATAAAATA
1 ATAAAATAAATATAAAATA
*
1588848 CTAATAATAATATATAAAA
1 ATAA-AATAA-ATATAAAA
1588867 AATTATATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 4 0.12
19 7 0.22
20 6 0.19
21 15 0.47
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAAATAAATATAAAATA
Found at i:1588908 original size:34 final size:32
Alignment explanation
Indices: 1588864--1589025 Score: 93
Period size: 34 Copynumber: 4.8 Consensus size: 32
1588854 ATAATATATA
*
1588864 AAAAATTATATGTTATATGTTTTCAAACGTACTTT
1 AAAAACTATAT-TTATATGTTTTCAAACGT--TTT
*
1588899 -AAAACTATA-TTATA--TTGTCAAAACCGTTTT
1 AAAAACTATATTTATATGTTTTC-AAA-CGTTTT
* **
1588929 AAAAAAACTATATTATATACG-TTTCAAAATTACTTT
1 --AAAAACTATATT-TATATGTTTTCAAACGT--TTT
*
1588965 AAAAACTATATACTATATGTTTTTCAAAAC-TGTTT
1 AAAAACTATAT-TTATATG-TTTTC-AAACGT-TTT
*
1589000 CAAAACTATATTTATATGTTTTCAAA
1 AAAAACTATATTTATATGTTTTCAAA
1589026 AGTTATATTT
Statistics
Matches: 101, Mismatches: 11, Indels: 33
0.70 0.08 0.23
Matches are distributed among these distances:
30 7 0.07
31 3 0.03
32 11 0.11
33 14 0.14
34 32 0.32
35 20 0.20
36 11 0.11
37 3 0.03
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.42
Consensus pattern (32 bp):
AAAAACTATATTTATATGTTTTCAAACGTTTT
Found at i:1588941 original size:67 final size:67
Alignment explanation
Indices: 1588862--1589028 Score: 173
Period size: 67 Copynumber: 2.5 Consensus size: 67
1588852 TAATAATATA
* *
1588862 TAAAAAATTATATGTTATATGTTTTCAAACGTACTTT-AAAACTATAT-TATA-TTGTCAAAACC
1 TAAAAAACTATAT-TTATATGTTTTCAAAAGTACTTTAAAAACTATATATATATTTGTCAAAACC
1588924 GTTT
65 G-TT
* * *
1588928 TAAAAAAACTATATTATATACG-TTTCAAAATTACTTTAAAAACTATATACTATATGTTTTTCAA
1 T-AAAAAACTATATT-TATATGTTTTCAAAAGTACTTTAAAAACTATATA-TATA--TTTGTCAA
*
1588992 AACTGTT
61 AACCGTT
*
1588999 T-CAAAACTATATTTATATGTTTTCAAAAGT
1 TAAAAAACTATATTTATATGTTTTCAAAAGT
1589029 TATATTTGAC
Statistics
Matches: 83, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
66 15 0.18
67 26 0.31
68 5 0.06
69 24 0.29
71 3 0.04
72 10 0.12
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.42
Consensus pattern (67 bp):
TAAAAAACTATATTTATATGTTTTCAAAAGTACTTTAAAAACTATATATATATTTGTCAAAACCG
TT
Found at i:1589779 original size:36 final size:36
Alignment explanation
Indices: 1589730--1589961 Score: 161
Period size: 36 Copynumber: 6.7 Consensus size: 36
1589720 GGGTTTTTTG
1589730 TGTTTCAAGAGAAACTGTCTCAAGAGGGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGGGACAAAATT
* *
1589766 TGTTTCAAAAGAAACTGTCTCAAGA---A-AAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGGGACAAAATT
* * * *
1589798 AGTTTTAAAAGAAACTGTCTCAAG-GGAGACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGG-GACAAAATT
* * *
1589834 TGTTTCAAG-GAAA-AGATATTCAA-A-GG-----TTT
1 TGTTTCAAGAGAAACTG-T-CTCAAGAGGGACAAAATT
* * * * *
1589863 TGTTTCAAGGGAAGCTATCTTAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGGGACAAAATT
* *
1589899 TGTTTCAAGGGAAACTGTCTCAAG-GGAGACAAGATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGG-GACAA-AATT
*
1589936 TGTTTCAAGGGAAACTGTCTCAAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAG
1589962 AGAAAACTTG
Statistics
Matches: 152, Mismatches: 24, Indels: 38
0.71 0.11 0.18
Matches are distributed among these distances:
29 14 0.09
30 5 0.03
31 1 0.01
32 27 0.18
33 1 0.01
34 2 0.01
35 8 0.05
36 66 0.43
37 27 0.18
38 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGGGACAAAATT
Found at i:1589947 original size:37 final size:36
Alignment explanation
Indices: 1589860--1589964 Score: 156
Period size: 37 Copynumber: 2.9 Consensus size: 36
1589850 TATTCAAAGG
* * *
1589860 TTTTGTTTCAAGGGAAGCTATCTTAAGAGAGACAAA
1 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAA
* *
1589896 ATTTGTTTCAAGGGAAACTGTCTCAAGGGAGACAAGA
1 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA-A
1589933 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGA
1 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGA
1589965 AAACTTGGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
36 30 0.49
37 31 0.51
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (36 bp):
TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAA
Found at i:1590929 original size:211 final size:210
Alignment explanation
Indices: 1590342--1591229 Score: 1523
Period size: 211 Copynumber: 4.2 Consensus size: 210
1590332 TGAAAGTTGT
* * *
1590342 GTTGTCTCGAGTCCAATATCCTTCGATGTGAAGTTAAAATTGGCTCCGAAATTGGGAAATTGTTT
1 GTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTG-TT
* * * * *
1590407 GTTGACAACCAGCTGTCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTC
65 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
*
1590472 GTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTC
130 GCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTC
1590537 GTGAAGTTGAACTTGC
195 GTGAAGTTGAACTTGC
*
1590553 GTTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AA--GTTG
1 GTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTG
*
1590615 TTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
*
1590680 CTGTGAAGTTGAAATTGGCTCTGAATTTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
131 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
1590745 TGAAGTTGAACTTGC
196 TGAAGTTGAACTTGC
* * * *
1590760 ATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGGAAATTGTTT
1 GTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTG-TT
*
1590825 ATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
65 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1590890 GCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTC
130 GCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTC
1590955 GTGAAGTTGAACTTGC
195 GTGAAGTTGAACTTGC
* * *
1590971 GTTGTCTGGAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTG
1 GTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTG
1591036 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
*
1591101 CTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
131 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
*
1591166 TGAAGTTGAACTTGT
196 TGAAGTTGAACTTGC
*
1591181 GTTGTCTCGAGTCCAA-ATCCTTCGTTGTGAAGTTGAAATTGACTCTGAA
1 GTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA
1591230 TGAAACTGAA
Statistics
Matches: 643, Mismatches: 30, Indels: 10
0.94 0.04 0.01
Matches are distributed among these distances:
207 192 0.30
208 3 0.00
209 31 0.05
210 163 0.25
211 254 0.40
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (210 bp):
GTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTG
TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
TGAAGTTGAACTTGC
Found at i:1590973 original size:418 final size:419
Alignment explanation
Indices: 1590343--1591229 Score: 1553
Period size: 418 Copynumber: 2.1 Consensus size: 419
1590333 GAAAGTTGTG
* * *
1590343 TTGTCTCGAGTCCAATATCCTTCGATGTGAAGTTAAAATTGGCTCCGAAATTGGGAAATTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTA
* * *
1590408 TTGACAACCAGCTGTCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCG
66 TTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCG
*
1590473 TTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
131 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
* *
1590538 TGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA
196 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAA
1590603 ATTGGGAA-GTTGTTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
261 ATTGGGAATGTTGTTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
1590667 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAATTTGGGAAGTTGTTGTTGACAACCAGC
326 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTGTTGACAACCAGC
1590732 GGTCCCTTCGTCGTGAAGTTGAACTTGCA
391 GGTCCCTTCGTCGTGAAGTTGAACTTGCA
* * *
1590761 TTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGGAAATTGTTTA
1 TTGTCTCGAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTA
* *
1590826 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
66 TTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCG
1590891 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
131 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
1590956 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAA
196 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAA
*
1591021 ATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
261 ATTGGGAA--TGTTGTTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
1591086 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTGTTGACAACCA
324 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTGTTGACAACCA
**
1591151 GCGGTCCCTTCGTCGTGAAGTTGAACTTGTG
389 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCA
* *
1591182 TTGTCTCGAGTCCAA-ATCCTTCGTTGTGAAGTTGAAATTGACTCTGAA
1 TTGTCTCGAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAA
1591230 TGAAACTGAA
Statistics
Matches: 444, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
418 254 0.57
420 31 0.07
421 159 0.36
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (419 bp):
TTGTCTCGAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTA
TTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCG
CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCG
TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAA
ATTGGGAATGTTGTTGAAAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTGTTGACAACCAGC
GGTCCCTTCGTCGTGAAGTTGAACTTGCA
Done.