genome.fa.s8827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008827.1 Hibiscus syriacus cultivar Beakdansim tig00112004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  210864

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116--186	29	2.5	29	88	2	99	36	11	12	39	1.79
470--536	22	3.0	22	100	0	134	19	26	26	26	1.99
1743--1802	20	2.9	21	80	5	77	28	28	21	21	1.99
1984--2043	29	2.0	31	84	12	81	45	16	6	31	1.74
2879--2922	17	2.5	18	88	3	63	70	0	9	20	1.14
2902--2968	35	2.0	35	86	11	97	70	1	8	19	1.22
2900--2973	39	1.9	38	86	8	105	68	1	8	21	1.23
3302--3370	36	1.9	36	96	0	129	26	21	18	33	1.97
7223--7279	18	3.1	18	73	16	62	66	1	1	29	1.12
15403--15448	23	2.0	23	91	0	74	39	0	2	58	1.10
15405--15438	17	1.9	17	88	5	50	35	0	2	61	1.11
17257--17288	2	16.0	2	100	0	64	50	0	0	50	1.00
17345--17390	2	23.0	2	100	0	92	50	0	0	50	1.00
17521--17546	2	13.0	2	100	0	52	50	0	0	50	1.00
21919--21972	23	2.4	22	77	19	58	61	0	1	37	1.07
25096--25152	28	2.0	28	96	0	105	45	12	17	24	1.83
28650--28790	41	3.4	41	73	8	126	29	24	13	31	1.93
28632--28818	83	2.3	82	86	0	239	29	25	14	30	1.95
31872--31923	23	2.2	24	93	3	88	28	17	5	48	1.70
34465--34547	34	2.4	34	87	0	121	20	30	16	32	1.95
34907--34964	20	3.0	20	85	7	66	24	18	31	25	1.98
35259--35322	18	3.1	21	78	13	71	46	9	10	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35274--35322	18	2.5	20	90	9	75	44	12	12	30	1.78
38492--38601	20	5.7	19	82	8	109	32	20	20	27	1.97
38511--38580	36	1.9	36	82	5	88	31	20	21	27	1.98
38492--38600	56	1.9	56	85	7	150	33	20	20	26	1.97
39759--39804	21	2.2	21	96	0	83	32	15	10	41	1.82
45432--45589	77	2.0	79	97	2	302	42	13	8	35	1.75
48252--48294	20	2.2	20	84	12	54	34	6	2	55	1.39
61164--61317	77	2.0	79	81	10	183	42	8	5	43	1.57
64750--64783	16	2.1	16	94	0	59	8	11	23	55	1.63
67476--67512	2	18.5	2	100	0	74	51	0	0	48	1.00
67772--67867	48	2.0	48	91	4	158	25	11	4	59	1.50
67839--67956	58	2.0	58	100	0	236	28	16	8	45	1.77
73709--73738	14	2.2	14	94	5	53	30	36	0	33	1.58
83664--83712	19	2.7	18	84	9	64	24	16	32	26	1.96
83555--83714	65	2.5	65	87	3	225	26	16	26	30	1.96
83556--83763	65	3.2	65	81	12	207	26	17	25	30	1.97
84904--84967	23	3.0	21	75	13	67	29	23	20	26	1.99
90876--90924	19	2.7	18	84	9	64	24	16	32	26	1.96
90767--90926	65	2.5	65	87	3	225	26	16	26	30	1.96
95651--95688	19	2.0	20	89	5	60	52	0	0	47	1.00
101466--101501	19	1.9	19	88	5	56	75	5	2	16	1.12
102829--102896	3	22.7	3	88	11	104	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103215--103969	113	6.8	113	92	3	1184	27	20	14	37	1.92
104761--105437	83	8.2	83	98	0	1282	37	21	14	27	1.92
106542--106590	12	4.1	12	78	7	55	4	12	0	83	0.77
106542--106578	11	3.4	11	92	0	56	0	13	0	86	0.57
116596--116646	18	2.9	17	75	16	50	72	1	0	25	0.95
117417--117452	19	1.9	19	88	5	56	72	5	5	16	1.23
118803--118898	3	32.7	3	93	4	169	64	0	1	34	1.01
126530--126601	2	36.0	2	100	0	144	50	0	0	50	1.00
127700--127737	19	2.0	20	89	5	60	50	15	21	13	1.78
137595--137634	22	1.9	20	85	10	53	50	5	10	35	1.58
154818--154881	32	2.0	32	100	0	128	37	34	15	12	1.85
159662--159762	50	2.0	50	96	0	184	33	14	3	47	1.63
165946--165983	20	1.9	20	94	0	67	34	21	21	23	1.97
171000--171045	18	2.6	18	96	0	83	8	19	52	19	1.72
170998--171023	13	2.0	13	100	0	52	15	23	46	15	1.83
174942--174980	3	13.3	3	91	5	53	28	0	38	33	1.57
175677--175713	17	2.2	17	100	0	74	27	18	10	43	1.83
177207--177244	19	2.0	19	85	10	51	63	2	0	34	1.09
177310--177352	21	2.0	21	82	8	52	23	0	41	34	1.55
179881--179938	23	2.6	22	79	15	66	46	0	6	46	1.29
180266--180312	20	2.3	20	92	0	76	44	6	8	40	1.60
180275--180314	20	2.0	20	100	0	80	45	5	10	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182515--182558	19	2.3	19	100	0	88	50	13	4	31	1.62
192141--192181	7	6.0	7	83	16	59	29	9	0	60	1.28
192141--192180	13	3.0	13	96	3	71	30	7	0	62	1.23
199982--200199	97	2.2	96	87	4	296	40	21	10	27	1.86
205644--205702	27	2.1	27	84	3	73	22	13	16	47	1.82
206616--207281	333	2.0	333	99	0	1305	30	16	22	30	1.96
209030--209251	30	7.4	30	96	1	410	33	23	19	23	1.97
209237--209329	31	3.0	31	79	3	98	34	21	17	26	1.95
210322--210359	20	1.9	20	88	0	58	10	31	34	23	1.89
210387--210429	21	2.0	21	81	0	50	16	25	30	27	1.97

Tables:   1

The End!